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Core Analysis

Beta Diversity

Click to view an interactive 3D plot of Unweighted UniFrac Distances, Weighted UniFrac Distances, KEGG Module Distances, or KEGG Enzyme Distances. Click and drag to rotate the plot. Click the "Colors" tab to change the color scheme or experimental variable for coloring. Generated using QIIME 1.9.1.

Unweighted UniFrac Distances

Unweighted UniFrac

Biplots

Click to view an interactive 3D biplot of Unweighted Unifrac Distances or Weighted UniFrac Distances. Click and drag to rotate the plot. Click the "Labels" tab to turn on biplot labels. This will allow you to visualize the center of the distribution of the top 10 most abundant genera across all samples. For example, if a genus is mostly present in a subset of samples, then the biplot sphere for that genus will be located near those samples. Generated using QIIME 1.9.1.

Unweighted UniFrac Distances

Unweighted UniFrac Biplots

Alpha Diversity

Click to view an interactive rarefaction plot. Select a diversity metric and an experimental variable to compare diversity across categories. Generated using QIIME 1.9.1.

Rarefaction Curves

Rarefaction Curves

Taxonomic and Functional Module Summaries

Click the following links to view interactive bar charts. You can hover over bars to view the corresponding taxon or module name.

The "Species" bar charts show all significantly differentiated taxonomic groups with each group labeled at the most specific level possible. For example, "Bacteroides" represents the fraction of DNA that aligned uniquely to the genus Bacteroides, but not uniquely to any species with Bacteroides. Shown here are the the top 50 most abundant taxonomic groups overall plus the top 10 most abundant for each sample. Bar charts are available for Species, Phylum, and KEGG Modules. For KEGG modules, the top 50 most abundant modules overall plus the top 10 most abundant for each sample are shown.

Species and above

Species bar charts

Area charts

Click to view interactive area charts. These show the same data as the bar charts above but with adjacent same-colored bars merged and smoothed. You can hover over regions to view the corresponding taxon name. Phylum-level summary is at the top. Scroll down for genus and species. Area charts are available for Species, Phylum, and KEGG Modules.

Species and above

[Species area charts


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