Enabling realtime logging in Toil
Cactus Command: /private/groups/cgl/hickey/work/cactus-bin-v2.6.4/venv-cactus-bin-v2.6.4/bin/cactus-pangenome ./js-grch38 ./hprc-v1.1-mc.seqfile --outName hprc-v1.1-mc-grch38 --outDir hprc-v1.1-mc-grch38 --reference GRCh38 CHM13 --filter 9 --giraffe clip filter --vcf --viz --odgi --chrom-vg clip filter --chrom-og --gbz clip filter full --gfa clip full --vcf --logFile hprc-v1.1-mc-grch38.log --batchSystem slurm --mgCores 64 --mapCores 16 --consCores 64 --indexCores 64
Cactus Commit: 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/GRCh38/assemblies/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG00438/assemblies/year1_f1_assembly_v2_genbank/HG00438.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG00438/assemblies/year1_f1_assembly_v2_genbank/HG00438.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG00621/assemblies/year1_f1_assembly_v2_genbank/HG00621.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG00621/assemblies/year1_f1_assembly_v2_genbank/HG00621.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG00673/assemblies/year1_f1_assembly_v2_genbank/HG00673.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG00673/assemblies/year1_f1_assembly_v2_genbank/HG00673.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/HG00733/assemblies/year1_f1_assembly_v2_genbank/HG00733.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/HG00733/assemblies/year1_f1_assembly_v2_genbank/HG00733.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG00735/assemblies/year1_f1_assembly_v2_genbank/HG00735.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG00735/assemblies/year1_f1_assembly_v2_genbank/HG00735.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG00741/assemblies/year1_f1_assembly_v2_genbank/HG00741.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG00741/assemblies/year1_f1_assembly_v2_genbank/HG00741.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG01071/assemblies/year1_f1_assembly_v2_genbank/HG01071.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG01071/assemblies/year1_f1_assembly_v2_genbank/HG01071.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG01106/assemblies/year1_f1_assembly_v2_genbank/HG01106.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG01106/assemblies/year1_f1_assembly_v2_genbank/HG01106.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/HG01109/assemblies/year1_f1_assembly_v2_genbank/HG01109.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/HG01109/assemblies/year1_f1_assembly_v2_genbank/HG01109.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG01123/assemblies/year1_f1_assembly_v2_genbank/HG01123.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG01123/assemblies/year1_f1_assembly_v2_genbank/HG01123.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG01175/assemblies/year1_f1_assembly_v2_genbank/HG01175.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG01175/assemblies/year1_f1_assembly_v2_genbank/HG01175.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/HG01243/assemblies/year1_f1_assembly_v2_genbank/HG01243.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/HG01243/assemblies/year1_f1_assembly_v2_genbank/HG01243.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG01258/assemblies/year1_f1_assembly_v2_genbank/HG01258.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG01258/assemblies/year1_f1_assembly_v2_genbank/HG01258.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG01358/assemblies/year1_f1_assembly_v2_genbank/HG01358.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG01358/assemblies/year1_f1_assembly_v2_genbank/HG01358.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG01361/assemblies/year1_f1_assembly_v2_genbank/HG01361.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG01361/assemblies/year1_f1_assembly_v2_genbank/HG01361.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG01891/assemblies/year1_f1_assembly_v2_genbank/HG01891.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG01891/assemblies/year1_f1_assembly_v2_genbank/HG01891.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG01928/assemblies/year1_f1_assembly_v2_genbank/HG01928.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG01928/assemblies/year1_f1_assembly_v2_genbank/HG01928.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG01952/assemblies/year1_f1_assembly_v2_genbank/HG01952.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG01952/assemblies/year1_f1_assembly_v2_genbank/HG01952.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG01978/assemblies/year1_f1_assembly_v2_genbank/HG01978.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG01978/assemblies/year1_f1_assembly_v2_genbank/HG01978.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/HG02055/assemblies/year1_f1_assembly_v2_genbank/HG02055.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/HG02055/assemblies/year1_f1_assembly_v2_genbank/HG02055.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/HG02080/assemblies/year1_f1_assembly_v2_genbank/HG02080.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/HG02109/assemblies/year1_f1_assembly_v2_genbank/HG02109.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/HG02109/assemblies/year1_f1_assembly_v2_genbank/HG02109.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/HG02145/assemblies/year1_f1_assembly_v2_genbank/HG02145.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/HG02145/assemblies/year1_f1_assembly_v2_genbank/HG02145.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG02148/assemblies/year1_f1_assembly_v2_genbank/HG02148.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG02148/assemblies/year1_f1_assembly_v2_genbank/HG02148.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG02257/assemblies/year1_f1_assembly_v2_genbank/HG02257.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG02257/assemblies/year1_f1_assembly_v2_genbank/HG02257.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG02486/assemblies/year1_f1_assembly_v2_genbank/HG02486.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG02486/assemblies/year1_f1_assembly_v2_genbank/HG02486.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG02559/assemblies/year1_f1_assembly_v2_genbank/HG02559.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG02559/assemblies/year1_f1_assembly_v2_genbank/HG02559.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG02572/assemblies/year1_f1_assembly_v2_genbank/HG02572.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG02572/assemblies/year1_f1_assembly_v2_genbank/HG02572.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG02622/assemblies/year1_f1_assembly_v2_genbank/HG02622.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG02622/assemblies/year1_f1_assembly_v2_genbank/HG02622.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG02630/assemblies/year1_f1_assembly_v2_genbank/HG02630.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG02630/assemblies/year1_f1_assembly_v2_genbank/HG02630.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG02717/assemblies/year1_f1_assembly_v2_genbank/HG02717.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG02717/assemblies/year1_f1_assembly_v2_genbank/HG02717.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/HG02723/assemblies/year1_f1_assembly_v2_genbank/HG02723.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/HG02723/assemblies/year1_f1_assembly_v2_genbank/HG02723.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/HG02818/assemblies/year1_f1_assembly_v2_genbank/HG02818.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/HG02818/assemblies/year1_f1_assembly_v2_genbank/HG02818.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG02886/assemblies/year1_f1_assembly_v2_genbank/HG02886.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG02886/assemblies/year1_f1_assembly_v2_genbank/HG02886.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/HG03098/assemblies/year1_f1_assembly_v2_genbank/HG03098.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/HG03098/assemblies/year1_f1_assembly_v2_genbank/HG03098.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG03453/assemblies/year1_f1_assembly_v2_genbank/HG03453.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG03453/assemblies/year1_f1_assembly_v2_genbank/HG03453.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/HG03486/assemblies/year1_f1_assembly_v2_genbank/HG03486.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/HG03486/assemblies/year1_f1_assembly_v2_genbank/HG03486.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/HG03492/assemblies/year1_f1_assembly_v2_genbank/HG03492.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/HG03492/assemblies/year1_f1_assembly_v2_genbank/HG03492.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG03516/assemblies/year1_f1_assembly_v2_genbank/HG03516.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG03516/assemblies/year1_f1_assembly_v2_genbank/HG03516.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG03540/assemblies/year1_f1_assembly_v2_genbank/HG03540.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG03540/assemblies/year1_f1_assembly_v2_genbank/HG03540.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG03579/assemblies/year1_f1_assembly_v2_genbank/HG03579.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC/HG03579/assemblies/year1_f1_assembly_v2_genbank/HG03579.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/NA18906/assemblies/year1_f1_assembly_v2_genbank/NA18906.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/NA18906/assemblies/year1_f1_assembly_v2_genbank/NA18906.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/NA20129/assemblies/year1_f1_assembly_v2_genbank/NA20129.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/NA20129/assemblies/year1_f1_assembly_v2_genbank/NA20129.maternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/NA21309/assemblies/year1_f1_assembly_v2_genbank/NA21309.paternal.f1_assembly_v2_genbank.fa.gz
Importing https://s3-us-west-2.amazonaws.com/human-pangenomics/working/HPRC_PLUS/NA21309/assemblies/year1_f1_assembly_v2_genbank/NA21309.maternal.f1_assembly_v2_genbank.fa.gz
Importing ftp://ftp.dfci.harvard.edu/pub/hli/minigraph/HPRC-f1g/CHM13v11Y.fa.gz
Importing file:///private/groups/cgl/hickey/work/hprc-v1.1-jul4/HG02080.1.fix.fa.gz
Batch system does not support auto-deployment. The user script ModuleDescriptor(dirPath='/private/groups/cgl/hickey/work/cactus-bin-v2.6.4/venv-cactus-bin-v2.6.4/lib/python3.10/site-packages', name='cactus.refmap.cactus_pangenome', fromVirtualEnv=True) will have to be present at the same location on every worker.
Saving graph of 1 jobs, 1 non-service, 1 new
Processing job 'pangenome_end_to_end_workflow' kind-pangenome_end_to_end_workflow/instance-t684tss8 v0
Running Toil version 5.11.0-9a04dabb36d6ab13ed1ac7c711dbdc8c71724dc9 on host phoenix.prism.
Starting real-time logging.
Issued job 'pangenome_end_to_end_workflow' kind-pangenome_end_to_end_workflow/instance-t684tss8 v1 with job batch system ID: 1 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
1 jobs are running, 0 jobs are issued and waiting to run
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1f3bbout v1 with job batch system ID: 2 and disk: 5.4 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-z6efd1u2 v1 with job batch system ID: 3 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-snxi4i6k v1 with job batch system ID: 4 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_wg4mrsq v1 with job batch system ID: 5 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ujqx7n9t v1 with job batch system ID: 6 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4ejri1xo v1 with job batch system ID: 7 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-3xof75yx v1 with job batch system ID: 8 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-hh4slwst v1 with job batch system ID: 9 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-iza20wrt v1 with job batch system ID: 10 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-0xewuf9p v1 with job batch system ID: 11 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-rs3oae5_ v1 with job batch system ID: 12 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-lef6k9gi v1 with job batch system ID: 13 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-riu1kko2 v1 with job batch system ID: 14 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-jpenlzbm v1 with job batch system ID: 15 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-aoaosmu8 v1 with job batch system ID: 16 and disk: 5.9 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4cx_ud_c v1 with job batch system ID: 17 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ijmb7jxc v1 with job batch system ID: 18 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-pxee23l_ v1 with job batch system ID: 19 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7e7uusis v1 with job batch system ID: 20 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-wunk1er0 v1 with job batch system ID: 21 and disk: 5.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-au7kw3rl v1 with job batch system ID: 22 and disk: 5.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-8kf4lc9c v1 with job batch system ID: 23 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-hw87a501 v1 with job batch system ID: 24 and disk: 5.2 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1ydvm5se v1 with job batch system ID: 25 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-pv_iz3uj v1 with job batch system ID: 26 and disk: 5.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-8qilq6u2 v1 with job batch system ID: 27 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-d5s19tgb v1 with job batch system ID: 28 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-cldjlxwd v1 with job batch system ID: 29 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_4am_g3h v1 with job batch system ID: 30 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-yg6c9hgk v1 with job batch system ID: 31 and disk: 5.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-8r_ta49w v1 with job batch system ID: 32 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-b6piu6w_ v1 with job batch system ID: 33 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-99kfz20e v1 with job batch system ID: 34 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-eruz3ctk v1 with job batch system ID: 35 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-fmzgtjgk v1 with job batch system ID: 36 and disk: 5.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-074clo5g v1 with job batch system ID: 37 and disk: 5.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-guqlxym1 v1 with job batch system ID: 38 and disk: 5.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-n8gpogn3 v1 with job batch system ID: 39 and disk: 5.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-w4r4wii6 v1 with job batch system ID: 40 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-c969avmm v1 with job batch system ID: 41 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-dnyk6vv0 v1 with job batch system ID: 42 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-euqtb0y3 v1 with job batch system ID: 43 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-voq9q96g v1 with job batch system ID: 44 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ao2zay64 v1 with job batch system ID: 45 and disk: 5.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-9ba50k8y v1 with job batch system ID: 46 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4l8j5ih9 v1 with job batch system ID: 47 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-hv1h2vbe v1 with job batch system ID: 48 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7b0nr33k v1 with job batch system ID: 49 and disk: 5.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-su4s3hci v1 with job batch system ID: 50 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-b_udrlyx v1 with job batch system ID: 51 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-wmq4xvbw v1 with job batch system ID: 52 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-h_39k2gn v1 with job batch system ID: 53 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-db67cant v1 with job batch system ID: 54 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1xotd53k v1 with job batch system ID: 55 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-5bxpm9wv v1 with job batch system ID: 56 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ei1fcei8 v1 with job batch system ID: 57 and disk: 5.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ujfoxl3r v1 with job batch system ID: 58 and disk: 5.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ur13kxe_ v1 with job batch system ID: 59 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-hidhkpio v1 with job batch system ID: 60 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-e6dckyl1 v1 with job batch system ID: 61 and disk: 5.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-qgcxp0km v1 with job batch system ID: 62 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-mzosio79 v1 with job batch system ID: 63 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-anzwc00n v1 with job batch system ID: 64 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ztjced0s v1 with job batch system ID: 65 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-jt2s3klg v1 with job batch system ID: 66 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_nmbtq13 v1 with job batch system ID: 67 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-mky_11dq v1 with job batch system ID: 68 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-m8whj6ts v1 with job batch system ID: 69 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-x7m35yt4 v1 with job batch system ID: 70 and disk: 5.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-3n8j31xy v1 with job batch system ID: 71 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-vr48itwk v1 with job batch system ID: 72 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-y2pv5jyy v1 with job batch system ID: 73 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-a0wwvkzo v1 with job batch system ID: 74 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-b9apl1yf v1 with job batch system ID: 75 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-23d7koie v1 with job batch system ID: 76 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-gbsuqyk0 v1 with job batch system ID: 77 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-xhdcwwcl v1 with job batch system ID: 78 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ev408uj2 v1 with job batch system ID: 79 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ae1qjeu5 v1 with job batch system ID: 80 and disk: 5.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-h1ioas_7 v1 with job batch system ID: 81 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4m09t8rr v1 with job batch system ID: 82 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-zo6bbbcp v1 with job batch system ID: 83 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-htaa46w3 v1 with job batch system ID: 84 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ntss5ah9 v1 with job batch system ID: 85 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-v3_000e2 v1 with job batch system ID: 86 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-e9e5vz7e v1 with job batch system ID: 87 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-6k02ktg2 v1 with job batch system ID: 88 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_x060zxh v1 with job batch system ID: 89 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-xu0k14oc v1 with job batch system ID: 90 and disk: 5.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-61lchcri v1 with job batch system ID: 91 and disk: 5.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-04 14:05:07.346307: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0697/6471/tmp6ff3081f/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p"
2023-07-04 14:05:07.407477: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/bf54/97dc/tmprg4mvj43/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p"
2023-07-04 14:05:07.435313: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/5037/ec88/tmp4dzcg7lj/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p"
2023-07-04 14:05:07.654608: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3f89/3ed7/tmpor50ymn4/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p"
2023-07-04 14:05:07.774361: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/05d1/953e/tmpzvx8ptmc/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
2023-07-04 14:05:07.859718: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/bfb1/2e03/tmpom8jaaw9/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p"
2023-07-04 14:05:09.383321: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/91fd/c911/tmpqhs0vpoq/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p"
2023-07-04 14:05:09.770679: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/771c/ea8f/tmpc7qum4wm/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p"
2023-07-04 14:05:10.215470: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/b626/c60e/tmpe3beg79j/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p"
2023-07-04 14:05:11.381272: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1418/3625/tmpk889q3tt/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
2023-07-04 14:05:11.406739: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/2730/b10e/tmpxvufxrtz/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p"
2023-07-04 14:05:11.476788: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1fa7/91c6/tmpq_fjwf20/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p"
2023-07-04 14:05:11.485551: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/491c/6588/tmpyfmc7z15/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p"
2023-07-04 14:05:11.568543: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/757c/8c97/tmp0mpd7qqr/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p"
2023-07-04 14:05:11.590669: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/4586/68b0/tmp7j5vxgns/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p"
2023-07-04 14:05:11.603254: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/6466/0102/tmpb8di_38v/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p"
2023-07-04 14:05:11.638328: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/8150/ee3b/tmpyyabdef1/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p"
2023-07-04 14:05:11.638355: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/951c/d1cf/tmpg2bd519q/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p"
2023-07-04 14:05:11.646323: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/fa08/cf6b/tmpbfxcz0t8/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p"
2023-07-04 14:05:11.657088: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/f15a/805f/tmpqw245sy8/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p"
2023-07-04 14:05:11.863734: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/88f6/91b4/tmpjmzih0k4/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p"
2023-07-04 14:05:11.875612: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/32a4/2f61/tmpz5w0dbct/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p"
2023-07-04 14:05:11.891894: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/fdca/b971/tmpe_f2figf/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p"
2023-07-04 14:05:11.899306: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e289/49b2/tmp24ipjqr9/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p"
2023-07-04 14:05:11.903268: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/d868/eb48/tmpf4o34qfl/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p"
2023-07-04 14:05:12.000175: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/5164/06cf/tmpe9knw0r4/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p"
2023-07-04 14:05:12.008207: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/fc4e/b368/tmp62s9rbun/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
2023-07-04 14:05:12.008598: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/346a/f798/tmp41vsf18p/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p"
2023-07-04 14:05:12.021799: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/786d/6983/tmpf657fv0c/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p"
2023-07-04 14:05:12.091422: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/05f0/43ed/tmpdq17ui9y/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-04 14:05:13.308441: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/eb48/fa18/tmpzaktnuqm/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p"
2023-07-04 14:05:13.511918: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0a7b/4716/tmpal2w96c7/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p"
2023-07-04 14:05:14.692324: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/c5c9/c38b/tmpeza3gpip/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p"
2023-07-04 14:05:14.762140: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0fd0/c822/tmplpc7qipj/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p"
2023-07-04 14:05:15.349842: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/b1c2/e7c8/tmplzgapxpz/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p"
2023-07-04 14:05:15.415278: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/f5f6/a940/tmp6dkq36gy/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-04 14:05:16.165241: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/726d/aeca/tmpih2l4lmd/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p"
2023-07-04 14:05:17.286349: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/bacc/40ed/tmp4lx9ov2v/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p"
2023-07-04 14:05:17.499978: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/8b4a/2b5a/tmpu107lvbr/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p"
2023-07-04 14:05:18.485550: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/76ac/019f/tmptem8myzj/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-04 14:05:19.040592: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e918/78f3/tmpu6exn17t/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p"
2023-07-04 14:05:19.046863: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/f7ae/fec1/tmpr7ugowtn/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-04 14:05:19.083819: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ce8a/6d78/tmpma5aove9/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p"
2023-07-04 14:05:19.410593: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2abb/5522/tmptf3a4aer/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p"
2023-07-04 14:05:19.497417: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/54a0/7b6f/tmp4onklepo/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p"
2023-07-04 14:05:19.661857: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0b30/9609/tmptmxjimx0/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p"
2023-07-04 14:05:19.881880: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/82e6/4d1a/tmp299gnh79/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-04 14:05:20.080102: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1a68/5111/tmpamlyezpi/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
2023-07-04 14:05:20.159841: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/74db/86af/tmpddk2fqnu/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p"
2023-07-04 14:05:20.163400: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ef0d/e549/tmpa4ypettw/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p"
2023-07-04 14:05:20.264310: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f088/7d3a/tmpwk_ia5x6/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p"
2023-07-04 14:05:20.506940: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4a51/451b/tmpfzv_y8np/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p"
2023-07-04 14:05:21.474641: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/7333/feec/tmpq1uivna5/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p"
2023-07-04 14:05:21.479264: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/5cf0/0dde/tmp4tuz2iz5/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p"
2023-07-04 14:05:21.567996: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/cc7e/8efe/tmpr623fp41/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p"
2023-07-04 14:05:21.644672: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/cdbe/6f25/tmpdi5qs12k/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p"
2023-07-04 14:05:21.657389: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/2e2b/42a8/tmpz84ctnsu/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p"
2023-07-04 14:05:22.039831: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/6f2a/9aad/tmpy1xj3rew/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p"
2023-07-04 14:05:22.041236: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1812/b7f0/tmp93p3sgek/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-04 14:05:22.055724: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9b98/bfeb/tmpuw28my06/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p"
2023-07-04 14:05:22.353843: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/64f0/9181/tmpy3r99631/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p"
2023-07-04 14:05:22.362686: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/dd9f/e113/tmpj4j8ke9u/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p"
2023-07-04 14:05:22.515890: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6b0a/3969/tmplo9mib7c/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-04 14:05:24.198950: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e856/d0a5/tmp18wjty13/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p"
2023-07-04 14:05:24.230825: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b992/ce73/tmp3lk7b9ki/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p"
2023-07-04 14:05:24.263509: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/104c/21b1/tmpv8ykg0n7/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p"
2023-07-04 14:05:27.085186: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/435e/9587/tmp8vsknp_i/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p"
2023-07-04 14:05:28.001502: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/93d2/10c3/tmpasg1osxs/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-04 14:05:28.525655: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1b9e/6c1d/tmp0zkghy_p/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p"
2023-07-04 14:05:29.569298: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/63b9/1560/tmpyyi8qjoz/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p"
2023-07-04 14:05:31.921262: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ec3a/4c2d/tmpmo0v8wgq/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
2023-07-04 14:05:32.121136: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/48da/fc29/tmp0kadjssk/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p"
2023-07-04 14:05:33.408280: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9266/aabd/tmpgluyi6e_/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-04 14:05:35.871820: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/26f0/f0ae/tmpr6zdxt84/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p"
2023-07-04 14:05:35.959844: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3d51/ae95/tmpx2c3cim6/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
2023-07-04 14:05:35.965575: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d99c/8444/tmprak6tt58/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p"
2023-07-04 14:05:35.969875: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2471/110f/tmp44iizg7w/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p"
2023-07-04 14:05:36.046794: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ccf4/64fe/tmpxqiiwuuf/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p"
2023-07-04 14:05:36.059852: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c2d0/b7cc/tmpswja6vqb/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p"
2023-07-04 14:05:36.079942: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/11a3/279c/tmp3as87yaa/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p"
2023-07-04 14:05:45.977305: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0c77/91fb/tmp_s_4b5zp/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p"
2023-07-04 14:05:54.648641: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/771c/ea8f/tmpc7qum4wm/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p'" in 44.8171 seconds and 72.3 Mi memory
2023-07-04 14:05:54.742135: Running the command: "cactus_analyseAssembly HG02145.2.sanitized.fa"
2023-07-04 14:05:55.453973: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/91fd/c911/tmpqhs0vpoq/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p'" in 46.0176 seconds and 167.6 Mi memory
2023-07-04 14:05:55.510945: Running the command: "cactus_analyseAssembly HG01361.1.sanitized.fa"
2023-07-04 14:05:59.318540: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0a7b/4716/tmpal2w96c7/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p'" in 45.7409 seconds and 74.1 Mi memory
2023-07-04 14:05:59.387035: Running the command: "cactus_analyseAssembly HG00673.1.sanitized.fa"
2023-07-04 14:06:01.016013: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/b1c2/e7c8/tmplzgapxpz/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p'" in 45.6158 seconds and 64.3 Mi memory
2023-07-04 14:06:01.049190: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0fd0/c822/tmplpc7qipj/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p'" in 46.2173 seconds and 154.0 Mi memory
2023-07-04 14:06:01.103178: Running the command: "cactus_analyseAssembly HG02109.1.sanitized.fa"
2023-07-04 14:06:01.140794: Running the command: "cactus_analyseAssembly HG02723.2.sanitized.fa"
2023-07-04 14:06:01.718883: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/c5c9/c38b/tmpeza3gpip/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p'" in 46.9751 seconds and 154.0 Mi memory
2023-07-04 14:06:01.768851: Running the command: "cactus_analyseAssembly HG02257.1.sanitized.fa"
2023-07-04 14:06:01.993439: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/f5f6/a940/tmp6dkq36gy/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p'" in 46.5104 seconds and 153.9 Mi memory
2023-07-04 14:06:02.054598: Running the command: "cactus_analyseAssembly HG00733.1.sanitized.fa"
2023-07-04 14:06:02.665667: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/5cf0/0dde/tmp4tuz2iz5/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p'" in 41.1103 seconds and 154.0 Mi memory
2023-07-04 14:06:02.719740: Running the command: "cactus_analyseAssembly HG03579.1.sanitized.fa"
2023-07-04 14:06:02.791698: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/bacc/40ed/tmp4lx9ov2v/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p'" in 45.4591 seconds and 153.9 Mi memory
2023-07-04 14:06:02.845492: Running the command: "cactus_analyseAssembly HG01891.2.sanitized.fa"
2023-07-04 14:06:02.846364: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/8b4a/2b5a/tmpu107lvbr/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p'" in 45.2948 seconds and 154.0 Mi memory
2023-07-04 14:06:02.908053: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
2023-07-04 14:06:02.910871: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/f7ae/fec1/tmpr7ugowtn/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p'" in 43.811 seconds and 154.0 Mi memory
2023-07-04 14:06:02.966028: Running the command: "cactus_analyseAssembly HG00733.2.sanitized.fa"
2023-07-04 14:06:03.381144: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/7333/feec/tmpq1uivna5/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p'" in 41.8345 seconds and 154.0 Mi memory
2023-07-04 14:06:03.426280: Running the command: "cactus_analyseAssembly HG03579.2.sanitized.fa"
2023-07-04 14:06:03.812178: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e918/78f3/tmpu6exn17t/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p'" in 44.7035 seconds and 153.9 Mi memory
2023-07-04 14:06:03.856284: Running the command: "cactus_analyseAssembly HG00741.2.sanitized.fa"
2023-07-04 14:06:04.106394: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/2e2b/42a8/tmpz84ctnsu/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 42.378 seconds and 70.7 Mi memory
2023-07-04 14:06:04.154942: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-04 14:06:04.373917: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/6f2a/9aad/tmpy1xj3rew/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p'" in 42.2692 seconds and 63.5 Mi memory
2023-07-04 14:06:04.393752: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/74db/86af/tmpddk2fqnu/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p'" in 44.2324 seconds and 154.0 Mi memory
2023-07-04 14:06:04.424195: Running the command: "cactus_analyseAssembly HG02818.2.sanitized.fa"
2023-07-04 14:06:04.441941: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/82e6/4d1a/tmp299gnh79/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p'" in 44.5584 seconds and 153.9 Mi memory
2023-07-04 14:06:04.442273: Running the command: "cactus_analyseAssembly HG02622.1.sanitized.fa"
2023-07-04 14:06:04.445169: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/cdbe/6f25/tmpdi5qs12k/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p'" in 42.7432 seconds and 154.0 Mi memory
2023-07-04 14:06:04.487959: Running the command: "cactus_analyseAssembly HG00735.2.sanitized.fa"
2023-07-04 14:06:04.496311: Running the command: "cactus_analyseAssembly HG03540.1.sanitized.fa"
2023-07-04 14:06:05.003592: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9b98/bfeb/tmpuw28my06/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p'" in 42.8734 seconds and 154.0 Mi memory
2023-07-04 14:06:05.028636: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ef0d/e549/tmpa4ypettw/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p'" in 44.8634 seconds and 154.0 Mi memory
2023-07-04 14:06:05.061452: Running the command: "cactus_analyseAssembly HG00438.1.sanitized.fa"
2023-07-04 14:06:05.073947: Running the command: "cactus_analyseAssembly HG03540.2.sanitized.fa"
2023-07-04 14:06:05.485028: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/76ac/019f/tmptem8myzj/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p'" in 46.9964 seconds and 153.9 Mi memory
2023-07-04 14:06:05.518902: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0b30/9609/tmptmxjimx0/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p'" in 45.8555 seconds and 154.0 Mi memory
2023-07-04 14:06:05.527917: Running the command: "cactus_analyseAssembly HG03516.2.sanitized.fa"
2023-07-04 14:06:05.562179: Running the command: "cactus_analyseAssembly HG01243.2.sanitized.fa"
2023-07-04 14:06:05.578653: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/cc7e/8efe/tmpr623fp41/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p'" in 43.9393 seconds and 153.9 Mi memory
2023-07-04 14:06:05.635930: Running the command: "cactus_analyseAssembly HG02622.2.sanitized.fa"
2023-07-04 14:06:06.507253: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4a51/451b/tmpfzv_y8np/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p'" in 45.4509 seconds and 154.0 Mi memory
2023-07-04 14:06:06.590124: Running the command: "cactus_analyseAssembly HG02886.2.sanitized.fa"
2023-07-04 14:06:06.685717: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f088/7d3a/tmpwk_ia5x6/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p'" in 46.4199 seconds and 153.9 Mi memory
2023-07-04 14:06:06.726805: Running the command: "cactus_analyseAssembly HG02886.1.sanitized.fa"
2023-07-04 14:06:06.791242: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1a68/5111/tmpamlyezpi/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p'" in 46.708 seconds and 460.2 Mi memory
2023-07-04 14:06:06.833975: Running the command: "cactus_analyseAssembly CHM13.sanitized.fa"
2023-07-04 14:06:06.931136: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/54a0/7b6f/tmp4onklepo/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p'" in 47.4321 seconds and 58.6 Mi memory
2023-07-04 14:06:06.972697: Running the command: "cactus_analyseAssembly HG02818.1.sanitized.fa"
2023-07-04 14:06:07.221336: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2abb/5522/tmptf3a4aer/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p'" in 47.8084 seconds and 154.0 Mi memory
2023-07-04 14:06:07.259386: Running the command: "cactus_analyseAssembly HG02148.1.sanitized.fa"
2023-07-04 14:06:08.825448: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ce8a/6d78/tmpma5aove9/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p'" in 49.6537 seconds and 154.0 Mi memory
2023-07-04 14:06:08.899492: Running the command: "cactus_analyseAssembly HG00735.1.sanitized.fa"
2023-07-04 14:06:08.929613: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6b0a/3969/tmplo9mib7c/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p'" in 46.4121 seconds and 154.0 Mi memory
2023-07-04 14:06:08.987616: Running the command: "cactus_analyseAssembly HG01258.1.sanitized.fa"
2023-07-04 14:06:10.447559: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1812/b7f0/tmp93p3sgek/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 48.3195 seconds and 460.2 Mi memory
2023-07-04 14:06:10.516475: Running the command: "cactus_analyseAssembly GRCh38.sanitized.fa"
2023-07-04 14:06:12.149983: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b992/ce73/tmp3lk7b9ki/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p'" in 46.8678 seconds and 154.0 Mi memory
2023-07-04 14:06:12.209676: Running the command: "cactus_analyseAssembly HG01978.2.sanitized.fa"
2023-07-04 14:06:12.575663: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/104c/21b1/tmpv8ykg0n7/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p'" in 48.3094 seconds and 153.9 Mi memory
2023-07-04 14:06:12.615673: Running the command: "cactus_analyseAssembly HG01071.1.sanitized.fa"
2023-07-04 14:06:12.617276: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e856/d0a5/tmp18wjty13/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p'" in 48.4168 seconds and 154.0 Mi memory
2023-07-04 14:06:12.656825: Running the command: "cactus_analyseAssembly HG00673.2.sanitized.fa"
2023-07-04 14:06:14.093148: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9744/a5c2/tmp94xgfmi8/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-04 14:06:14.365722: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/66ca/2e85/tmpgosaf5fe/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p"
2023-07-04 14:06:14.609791: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3159/5619/tmpigj7x1f6/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p"
2023-07-04 14:06:15.569198: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/04b5/b6f8/tmpuiffxfgf/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p"
2023-07-04 14:06:19.029211: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/68a6/5ef3/tmpdufodew2/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-04 14:06:19.125300: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1043/cf7a/tmpbe1hr0rl/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
2023-07-04 14:06:19.257650: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a334/8ad6/tmpzo_um14t/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p"
2023-07-04 14:06:20.138630: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3233/a2f7/tmpns6xcjca/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p"
2023-07-04 14:06:20.533202: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/53b2/e555/tmptdktq8ui/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p"
2023-07-04 14:06:29.571500: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9266/aabd/tmpgluyi6e_/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p'" in 56.0726 seconds and 153.9 Mi memory
2023-07-04 14:06:29.645212: Running the command: "cactus_analyseAssembly HG00621.1.sanitized.fa"
2023-07-04 14:06:30.036867: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/11a3/279c/tmp3as87yaa/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p'" in 53.9318 seconds and 51.9 Mi memory
2023-07-04 14:06:30.070522: Running the command: "cactus_analyseAssembly NA21309.1.sanitized.fa"
2023-07-04 14:06:31.852251: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3d51/ae95/tmpx2c3cim6/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p'" in 55.8239 seconds and 73.5 Mi memory
2023-07-04 14:06:31.897994: Running the command: "cactus_analyseAssembly HG03486.1.sanitized.fa"
2023-07-04 14:06:32.632851: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/26f0/f0ae/tmpr6zdxt84/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p'" in 56.6436 seconds and 154.0 Mi memory
2023-07-04 14:06:32.687923: Running the command: "cactus_analyseAssembly HG01123.1.sanitized.fa"
2023-07-04 14:06:33.415517: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ccf4/64fe/tmpxqiiwuuf/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p'" in 57.3041 seconds and 154.0 Mi memory
2023-07-04 14:06:33.496414: Running the command: "cactus_analyseAssembly HG01258.2.sanitized.fa"
2023-07-04 14:06:35.445886: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/93d2/10c3/tmpasg1osxs/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p'" in 67.0596 seconds and 61.4 Mi memory
2023-07-04 14:06:35.654077: Running the command: "cactus_analyseAssembly HG02145.1.sanitized.fa"
2023-07-04 14:06:36.967738: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/63b9/1560/tmpyyi8qjoz/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p'" in 66.8368 seconds and 73.0 Mi memory
2023-07-04 14:06:37.282199: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d99c/8444/tmprak6tt58/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p'" in 61.2034 seconds and 153.9 Mi memory
2023-07-04 14:06:37.318636: Running the command: "cactus_analyseAssembly HG02080.1.sanitized.fa"
2023-07-04 14:06:37.382112: Running the command: "cactus_analyseAssembly HG02148.2.sanitized.fa"
2023-07-04 14:06:37.886043: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2471/110f/tmp44iizg7w/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p'" in 61.8346 seconds and 153.9 Mi memory
2023-07-04 14:06:37.949858: Running the command: "cactus_analyseAssembly HG01952.2.sanitized.fa"
2023-07-04 14:06:39.794694: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c2d0/b7cc/tmpswja6vqb/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p'" in 63.534 seconds and 153.9 Mi memory
2023-07-04 14:06:39.995503: Running the command: "cactus_analyseAssembly HG02257.2.sanitized.fa"
2023-07-04 14:06:42.574460: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/5037/ec88/tmp4dzcg7lj/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p'" in 95.1376 seconds and 154.0 Mi memory
2023-07-04 14:06:42.634118: Running the command: "cactus_analyseAssembly HG01358.1.sanitized.fa"
2023-07-04 14:06:42.656550: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/bf54/97dc/tmprg4mvj43/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p'" in 95.2475 seconds and 154.0 Mi memory
2023-07-04 14:06:42.722137: Running the command: "cactus_analyseAssembly HG01928.1.sanitized.fa"
2023-07-04 14:06:43.432367: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/05d1/953e/tmpzvx8ptmc/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p'" in 95.6564 seconds and 154.0 Mi memory
2023-07-04 14:06:43.494049: Running the command: "cactus_analyseAssembly HG02717.1.sanitized.fa"
2023-07-04 14:06:43.869246: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0697/6471/tmp6ff3081f/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p'" in 96.5213 seconds and 154.0 Mi memory
2023-07-04 14:06:43.933130: Running the command: "cactus_analyseAssembly HG02486.1.sanitized.fa"
2023-07-04 14:06:44.521582: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/bfb1/2e03/tmpom8jaaw9/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p'" in 96.66 seconds and 154.0 Mi memory
2023-07-04 14:06:44.579385: Running the command: "cactus_analyseAssembly HG02055.1.sanitized.fa"
2023-07-04 14:06:48.114619: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 53.3231 seconds and 72.1 Mi memory
2023-07-04 14:06:50.496916: Successfully ran: "cactus_analyseAssembly HG01361.1.sanitized.fa" in 54.923 seconds and 167.4 Mi memory
2023-07-04 14:06:53.350845: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 53.9222 seconds and 73.9 Mi memory
2023-07-04 14:06:54.157315: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3f89/3ed7/tmpor50ymn4/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p'" in 106.5012 seconds and 75.9 Mi memory
2023-07-04 14:06:54.232071: Running the command: "cactus_analyseAssembly HG01243.1.sanitized.fa"
2023-07-04 14:06:55.640817: Successfully ran: "cactus_analyseAssembly HG02109.1.sanitized.fa" in 54.5224 seconds and 64.1 Mi memory
2023-07-04 14:06:56.763461: Successfully ran: "cactus_analyseAssembly HG00733.1.sanitized.fa" in 54.6673 seconds and 153.9 Mi memory
2023-07-04 14:06:56.926362: Successfully ran: "cactus_analyseAssembly HG03579.2.sanitized.fa" in 53.4908 seconds and 153.9 Mi memory
2023-07-04 14:06:57.152932: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 54.1667 seconds and 153.9 Mi memory
2023-07-04 14:06:57.849967: Successfully ran: "cactus_analyseAssembly HG03579.1.sanitized.fa" in 55.1111 seconds and 153.9 Mi memory
2023-07-04 14:06:58.152824: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 56.9945 seconds and 153.8 Mi memory
2023-07-04 14:06:58.172726: Successfully ran: "cactus_analyseAssembly HG01891.2.sanitized.fa" in 55.3061 seconds and 153.9 Mi memory
2023-07-04 14:06:58.677370: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 54.2322 seconds and 63.4 Mi memory
2023-07-04 14:06:59.049199: Successfully ran: "cactus_analyseAssembly HG00741.2.sanitized.fa" in 55.1824 seconds and 153.9 Mi memory
2023-07-04 14:06:59.481435: Successfully ran: "cactus_analyseAssembly HG03540.1.sanitized.fa" in 54.9594 seconds and 153.9 Mi memory
2023-07-04 14:06:59.502053: Successfully ran: "cactus_analyseAssembly HG02257.1.sanitized.fa" in 57.7092 seconds and 153.9 Mi memory
2023-07-04 14:06:59.820300: Successfully ran: "cactus_analyseAssembly HG02723.1.sanitized.fa" in 55.6526 seconds and 70.7 Mi memory
2023-07-04 14:07:00.437751: Successfully ran: "cactus_analyseAssembly HG02622.2.sanitized.fa" in 54.7691 seconds and 153.9 Mi memory
2023-07-04 14:07:00.791118: Successfully ran: "cactus_analyseAssembly HG00438.1.sanitized.fa" in 55.7099 seconds and 153.9 Mi memory
2023-07-04 14:07:01.140416: Successfully ran: "cactus_analyseAssembly HG03098.2.sanitized.fa" in 58.1989 seconds and 153.9 Mi memory
2023-07-04 14:07:04.714592: Successfully ran: "cactus_analyseAssembly HG00735.1.sanitized.fa" in 55.7824 seconds and 153.9 Mi memory
2023-07-04 14:07:12.082632: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 61.5161 seconds and 460.2 Mi memory
2023-07-04 14:07:13.961417: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/b626/c60e/tmpe3beg79j/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p'" in 123.7443 seconds and 154.0 Mi memory
2023-07-04 14:07:14.037594: Running the command: "cactus_analyseAssembly HG03098.1.sanitized.fa"
2023-07-04 14:07:16.125007: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/2730/b10e/tmpxvufxrtz/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p'" in 124.7154 seconds and 153.9 Mi memory
2023-07-04 14:07:16.202166: Running the command: "cactus_analyseAssembly HG01361.2.sanitized.fa"
2023-07-04 14:07:16.423442: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/491c/6588/tmpyfmc7z15/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p'" in 124.9363 seconds and 66.9 Mi memory
2023-07-04 14:07:16.493108: Running the command: "cactus_analyseAssembly HG03492.2.sanitized.fa"
2023-07-04 14:07:16.550144: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/4586/68b0/tmp7j5vxgns/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p'" in 124.9576 seconds and 170.2 Mi memory
2023-07-04 14:07:16.624090: Running the command: "cactus_analyseAssembly HG02717.2.sanitized.fa"
2023-07-04 14:07:17.039033: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1fa7/91c6/tmpq_fjwf20/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p'" in 125.5608 seconds and 176.9 Mi memory
2023-07-04 14:07:17.123402: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/951c/d1cf/tmpg2bd519q/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p'" in 125.4835 seconds and 154.0 Mi memory
2023-07-04 14:07:17.138385: Running the command: "cactus_analyseAssembly HG01071.2.sanitized.fa"
2023-07-04 14:07:17.195266: Running the command: "cactus_analyseAssembly HG00741.1.sanitized.fa"
2023-07-04 14:07:17.232171: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1418/3625/tmpk889q3tt/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p'" in 125.8493 seconds and 154.0 Mi memory
2023-07-04 14:07:17.299764: Running the command: "cactus_analyseAssembly HG00621.2.sanitized.fa"
2023-07-04 14:07:17.328251: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/757c/8c97/tmp0mpd7qqr/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p'" in 125.758 seconds and 154.0 Mi memory
2023-07-04 14:07:17.412575: Running the command: "cactus_analyseAssembly HG02486.2.sanitized.fa"
2023-07-04 14:07:17.641364: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/8150/ee3b/tmpyyabdef1/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p'" in 126.0016 seconds and 154.0 Mi memory
2023-07-04 14:07:17.708771: Running the command: "cactus_analyseAssembly HG02559.1.sanitized.fa"
2023-07-04 14:07:17.809111: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/5164/06cf/tmpe9knw0r4/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p'" in 125.8073 seconds and 154.0 Mi memory
2023-07-04 14:07:17.824446: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/f15a/805f/tmpqw245sy8/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p'" in 126.166 seconds and 153.9 Mi memory
2023-07-04 14:07:17.857399: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/fdca/b971/tmpe_f2figf/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p'" in 125.964 seconds and 154.0 Mi memory
2023-07-04 14:07:17.866968: Running the command: "cactus_analyseAssembly NA18906.2.sanitized.fa"
2023-07-04 14:07:17.882990: Running the command: "cactus_analyseAssembly HG01891.1.sanitized.fa"
2023-07-04 14:07:17.899779: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e289/49b2/tmp24ipjqr9/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p'" in 125.9907 seconds and 74.3 Mi memory
2023-07-04 14:07:17.914763: Running the command: "cactus_analyseAssembly HG03486.2.sanitized.fa"
2023-07-04 14:07:17.963155: Running the command: "cactus_analyseAssembly HG02630.1.sanitized.fa"
2023-07-04 14:07:18.047202: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/6466/0102/tmpb8di_38v/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 126.4424 seconds and 154.0 Mi memory
2023-07-04 14:07:18.092016: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
2023-07-04 14:07:18.212613: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/32a4/2f61/tmpz5w0dbct/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p'" in 126.3354 seconds and 154.0 Mi memory
2023-07-04 14:07:18.257308: Running the command: "cactus_analyseAssembly NA20129.2.sanitized.fa"
2023-07-04 14:07:18.310891: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/d868/eb48/tmpf4o34qfl/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p'" in 126.4059 seconds and 62.0 Mi memory
2023-07-04 14:07:18.354133: Running the command: "cactus_analyseAssembly HG03453.1.sanitized.fa"
2023-07-04 14:07:18.603463: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/88f6/91b4/tmpjmzih0k4/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p'" in 126.7381 seconds and 154.0 Mi memory
2023-07-04 14:07:18.647672: Running the command: "cactus_analyseAssembly HG03453.2.sanitized.fa"
2023-07-04 14:07:18.684534: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/fa08/cf6b/tmpbfxcz0t8/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p'" in 127.0365 seconds and 56.6 Mi memory
2023-07-04 14:07:18.711685: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/fc4e/b368/tmp62s9rbun/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p'" in 126.7019 seconds and 75.9 Mi memory
2023-07-04 14:07:18.729057: Running the command: "cactus_analyseAssembly NA20129.1.sanitized.fa"
2023-07-04 14:07:18.756060: Running the command: "cactus_analyseAssembly HG02109.2.sanitized.fa"
2023-07-04 14:07:18.779903: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/346a/f798/tmp41vsf18p/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p'" in 126.7697 seconds and 154.0 Mi memory
2023-07-04 14:07:18.789771: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/05f0/43ed/tmpdq17ui9y/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p'" in 126.6956 seconds and 154.0 Mi memory
2023-07-04 14:07:18.823709: Running the command: "cactus_analyseAssembly HG02572.2.sanitized.fa"
2023-07-04 14:07:18.833756: Running the command: "cactus_analyseAssembly HG01106.2.sanitized.fa"
2023-07-04 14:07:18.977218: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/786d/6983/tmpf657fv0c/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p'" in 126.954 seconds and 153.9 Mi memory
2023-07-04 14:07:19.019693: Running the command: "cactus_analyseAssembly NA18906.1.sanitized.fa"
2023-07-04 14:07:20.830768: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/726d/aeca/tmpih2l4lmd/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p'" in 124.6636 seconds and 154.0 Mi memory
2023-07-04 14:07:20.871935: Running the command: "cactus_analyseAssembly HG01175.1.sanitized.fa"
2023-07-04 14:07:20.950429: Successfully ran: "cactus_analyseAssembly HG02622.1.sanitized.fa" in 76.507 seconds and 153.9 Mi memory
2023-07-04 14:07:21.000228: Successfully ran: "cactus_analyseAssembly HG00735.2.sanitized.fa" in 76.511 seconds and 153.9 Mi memory
2023-07-04 14:07:21.135652: Successfully ran: "cactus_analyseAssembly HG01258.1.sanitized.fa" in 72.1461 seconds and 153.9 Mi memory
2023-07-04 14:07:21.282942: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 75.7529 seconds and 153.9 Mi memory
2023-07-04 14:07:21.455924: Successfully ran: "cactus_analyseAssembly HG03540.2.sanitized.fa" in 76.3801 seconds and 153.9 Mi memory
2023-07-04 14:07:21.773679: Successfully ran: "cactus_analyseAssembly HG02886.2.sanitized.fa" in 75.1822 seconds and 153.9 Mi memory
2023-07-04 14:07:21.855619: Successfully ran: "cactus_analyseAssembly HG01243.2.sanitized.fa" in 76.2914 seconds and 153.9 Mi memory
2023-07-04 14:07:22.092504: Successfully ran: "cactus_analyseAssembly HG02148.1.sanitized.fa" in 74.8307 seconds and 153.9 Mi memory
2023-07-04 14:07:22.476054: Successfully ran: "cactus_analyseAssembly HG02818.1.sanitized.fa" in 75.5012 seconds and 58.6 Mi memory
2023-07-04 14:07:23.111262: Successfully ran: "cactus_analyseAssembly HG02886.1.sanitized.fa" in 76.3779 seconds and 153.9 Mi memory
2023-07-04 14:07:24.969145: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/64f0/9181/tmpy3r99631/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p'" in 122.6013 seconds and 154.0 Mi memory
2023-07-04 14:07:25.015428: Running the command: "cactus_analyseAssembly HG01928.2.sanitized.fa"
2023-07-04 14:07:25.114676: Successfully ran: "cactus_analyseAssembly CHM13.sanitized.fa" in 77.4675 seconds and 460.2 Mi memory
2023-07-04 14:07:25.316262: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/dd9f/e113/tmpj4j8ke9u/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p'" in 122.9521 seconds and 154.0 Mi memory
2023-07-04 14:07:25.361155: Running the command: "cactus_analyseAssembly HG01109.2.sanitized.fa"
2023-07-04 14:07:28.286876: Successfully ran: "cactus_analyseAssembly HG01978.2.sanitized.fa" in 76.0751 seconds and 153.9 Mi memory
2023-07-04 14:07:28.379025: Successfully ran: "cactus_analyseAssembly HG01071.1.sanitized.fa" in 75.7613 seconds and 153.9 Mi memory
2023-07-04 14:07:32.741027: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 76.7729 seconds and 153.9 Mi memory
2023-07-04 14:07:36.970381: Successfully ran: "cactus_analyseAssembly HG02145.1.sanitized.fa" in 61.1079 seconds and 61.4 Mi memory
2023-07-04 14:07:36.989937: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 67.3183 seconds and 153.9 Mi memory
2023-07-04 14:07:38.437052: Successfully ran: "cactus_analyseAssembly NA21309.1.sanitized.fa" in 68.3629 seconds and 51.9 Mi memory
2023-07-04 14:07:40.183152: Successfully ran: "cactus_analyseAssembly HG02080.1.sanitized.fa" in 62.6887 seconds and 73.0 Mi memory
2023-07-04 14:07:42.029898: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/eb48/fa18/tmpzaktnuqm/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p'" in 148.72 seconds and 68.1 Mi memory
2023-07-04 14:07:42.564938: Running the command: "cactus_analyseAssembly NA21309.2.sanitized.fa"
2023-07-04 14:07:43.489955: Successfully ran: "cactus_analyseAssembly HG01123.1.sanitized.fa" in 70.7869 seconds and 153.9 Mi memory
2023-07-04 14:07:43.719889: Successfully ran: "cactus_analyseAssembly HG03486.1.sanitized.fa" in 71.8058 seconds and 73.5 Mi memory
2023-07-04 14:07:44.783662: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 71.2175 seconds and 153.9 Mi memory
2023-07-04 14:07:47.939944: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 70.5276 seconds and 153.9 Mi memory
2023-07-04 14:07:49.099729: Successfully ran: "cactus_analyseAssembly HG01952.2.sanitized.fa" in 71.1196 seconds and 153.9 Mi memory
2023-07-04 14:07:50.793688: Successfully ran: "cactus_analyseAssembly HG02257.2.sanitized.fa" in 70.6646 seconds and 153.9 Mi memory
2023-07-04 14:08:03.231484: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/435e/9587/tmp8vsknp_i/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p'" in 156.0787 seconds and 153.9 Mi memory
2023-07-04 14:08:03.285591: Running the command: "cactus_analyseAssembly HG01952.1.sanitized.fa"
2023-07-04 14:08:03.683110: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ec3a/4c2d/tmpmo0v8wgq/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p'" in 151.2974 seconds and 153.9 Mi memory
2023-07-04 14:08:03.736799: Running the command: "cactus_analyseAssembly HG00438.2.sanitized.fa"
2023-07-04 14:08:04.207397: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1b9e/6c1d/tmp0zkghy_p/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p'" in 155.3665 seconds and 153.9 Mi memory
2023-07-04 14:08:04.262050: Running the command: "cactus_analyseAssembly HG02572.1.sanitized.fa"
2023-07-04 14:08:05.982788: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/66ca/2e85/tmpgosaf5fe/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p'" in 111.5581 seconds and 154.0 Mi memory
2023-07-04 14:08:06.030576: Running the command: "cactus_analyseAssembly HG01106.1.sanitized.fa"
2023-07-04 14:08:06.126338: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/48da/fc29/tmp0kadjssk/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p'" in 153.7336 seconds and 153.9 Mi memory
2023-07-04 14:08:06.161653: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/04b5/b6f8/tmpuiffxfgf/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p'" in 110.4274 seconds and 153.9 Mi memory
2023-07-04 14:08:06.176662: Running the command: "cactus_analyseAssembly HG01358.2.sanitized.fa"
2023-07-04 14:08:06.213481: Running the command: "cactus_analyseAssembly HG02559.2.sanitized.fa"
2023-07-04 14:08:07.931176: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0c77/91fb/tmp_s_4b5zp/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p'" in 141.6824 seconds and 153.9 Mi memory
2023-07-04 14:08:07.980736: Running the command: "cactus_analyseAssembly HG01978.1.sanitized.fa"
2023-07-04 14:08:08.197218: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9744/a5c2/tmp94xgfmi8/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p'" in 113.9762 seconds and 154.0 Mi memory
2023-07-04 14:08:08.264683: Running the command: "cactus_analyseAssembly HG01109.1.sanitized.fa"
2023-07-04 14:08:09.305569: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1043/cf7a/tmpbe1hr0rl/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p'" in 109.9762 seconds and 154.0 Mi memory
2023-07-04 14:08:09.360678: Running the command: "cactus_analyseAssembly HG01123.2.sanitized.fa"
2023-07-04 14:08:10.811077: Successfully ran: "cactus_analyseAssembly HG01358.1.sanitized.fa" in 88.175 seconds and 153.9 Mi memory
2023-07-04 14:08:10.848608: Successfully ran: "cactus_analyseAssembly HG02486.1.sanitized.fa" in 86.9134 seconds and 153.9 Mi memory
2023-07-04 14:08:10.887725: Successfully ran: "cactus_analyseAssembly HG01928.1.sanitized.fa" in 88.1641 seconds and 153.9 Mi memory
2023-07-04 14:08:10.989524: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/53b2/e555/tmptdktq8ui/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p'" in 110.3201 seconds and 154.0 Mi memory
2023-07-04 14:08:11.035286: Running the command: "cactus_analyseAssembly HG03516.1.sanitized.fa"
2023-07-04 14:08:11.105997: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3159/5619/tmpigj7x1f6/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p'" in 116.3687 seconds and 51.9 Mi memory
2023-07-04 14:08:11.146584: Running the command: "cactus_analyseAssembly HG03492.1.sanitized.fa"
2023-07-04 14:08:11.622501: Successfully ran: "cactus_analyseAssembly HG02717.1.sanitized.fa" in 88.127 seconds and 153.9 Mi memory
2023-07-04 14:08:11.697023: Successfully ran: "cactus_analyseAssembly HG02055.1.sanitized.fa" in 87.1153 seconds and 153.9 Mi memory
2023-07-04 14:08:13.145669: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a334/8ad6/tmpzo_um14t/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p'" in 113.6484 seconds and 154.0 Mi memory
2023-07-04 14:08:13.186160: Running the command: "cactus_analyseAssembly HG02055.2.sanitized.fa"
2023-07-04 14:08:13.462876: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/68a6/5ef3/tmpdufodew2/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p'" in 114.2396 seconds and 154.0 Mi memory
2023-07-04 14:08:13.525465: Running the command: "cactus_analyseAssembly HG01175.2.sanitized.fa"
2023-07-04 14:08:14.228849: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3233/a2f7/tmpns6xcjca/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p'" in 114.0875 seconds and 154.0 Mi memory
2023-07-04 14:08:14.273498: Running the command: "cactus_analyseAssembly HG02630.2.sanitized.fa"
2023-07-04 14:08:14.627370: Successfully ran: "cactus_analyseAssembly HG03098.1.sanitized.fa" in 60.5826 seconds and 154.0 Mi memory
2023-07-04 14:08:16.216184: Successfully ran: "cactus_analyseAssembly HG03492.2.sanitized.fa" in 59.7205 seconds and 66.8 Mi memory
2023-07-04 14:08:16.375798: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 60.1719 seconds and 154.0 Mi memory
2023-07-04 14:08:16.563854: Successfully ran: "cactus_analyseAssembly HG01071.2.sanitized.fa" in 59.4236 seconds and 176.5 Mi memory
2023-07-04 14:08:16.626523: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 59.3254 seconds and 154.0 Mi memory
2023-07-04 14:08:16.719969: Successfully ran: "cactus_analyseAssembly HG02717.2.sanitized.fa" in 60.0946 seconds and 169.7 Mi memory
2023-07-04 14:08:16.730936: Successfully ran: "cactus_analyseAssembly HG00741.1.sanitized.fa" in 59.5329 seconds and 154.0 Mi memory
2023-07-04 14:08:16.813945: Successfully ran: "cactus_analyseAssembly HG03486.2.sanitized.fa" in 58.897 seconds and 154.0 Mi memory
2023-07-04 14:08:16.827675: Successfully ran: "cactus_analyseAssembly HG03453.1.sanitized.fa" in 58.4722 seconds and 61.9 Mi memory
2023-07-04 14:08:16.886256: Successfully ran: "cactus_analyseAssembly HG02080.2.sanitized.fa" in 58.7929 seconds and 153.9 Mi memory
2023-07-04 14:08:16.966880: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 58.2092 seconds and 75.8 Mi memory
2023-07-04 14:08:17.018879: Successfully ran: "cactus_analyseAssembly HG02486.2.sanitized.fa" in 59.605 seconds and 154.0 Mi memory
2023-07-04 14:08:17.202796: Successfully ran: "cactus_analyseAssembly HG01891.1.sanitized.fa" in 59.3186 seconds and 153.9 Mi memory
2023-07-04 14:08:17.244963: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 58.9864 seconds and 154.0 Mi memory
2023-07-04 14:08:17.340778: Successfully ran: "cactus_analyseAssembly NA18906.2.sanitized.fa" in 59.4582 seconds and 154.0 Mi memory
2023-07-04 14:08:17.342904: Successfully ran: "cactus_analyseAssembly HG02630.1.sanitized.fa" in 59.3783 seconds and 73.9 Mi memory
2023-07-04 14:08:17.388386: Successfully ran: "cactus_analyseAssembly HG02559.1.sanitized.fa" in 59.6779 seconds and 153.9 Mi memory
2023-07-04 14:08:17.596307: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 58.947 seconds and 154.0 Mi memory
2023-07-04 14:08:17.802821: Successfully ran: "cactus_analyseAssembly NA20129.1.sanitized.fa" in 59.0723 seconds and 56.5 Mi memory
2023-07-04 14:08:17.967148: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 59.132 seconds and 154.0 Mi memory
2023-07-04 14:08:17.996010: Successfully ran: "cactus_analyseAssembly NA18906.1.sanitized.fa" in 58.975 seconds and 153.9 Mi memory
2023-07-04 14:08:18.449191: Successfully ran: "cactus_analyseAssembly HG01243.1.sanitized.fa" in 84.2158 seconds and 75.8 Mi memory
2023-07-04 14:08:18.450868: Successfully ran: "cactus_analyseAssembly HG02572.2.sanitized.fa" in 59.6258 seconds and 154.0 Mi memory
2023-07-04 14:08:18.854563: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 57.9801 seconds and 154.0 Mi memory
2023-07-04 14:08:19.823906: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 54.4614 seconds and 153.8 Mi memory
2023-07-04 14:08:20.230157: Successfully ran: "cactus_analyseAssembly HG01928.2.sanitized.fa" in 55.2132 seconds and 154.0 Mi memory
2023-07-04 14:08:58.638412: Successfully ran: "cactus_analyseAssembly NA21309.2.sanitized.fa" in 76.0722 seconds and 68.1 Mi memory
2023-07-04 14:09:03.825451: Successfully ran: "cactus_analyseAssembly HG01952.1.sanitized.fa" in 60.5383 seconds and 153.9 Mi memory
2023-07-04 14:09:04.411297: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 60.1477 seconds and 154.0 Mi memory
2023-07-04 14:09:04.997429: Successfully ran: "cactus_analyseAssembly HG00438.2.sanitized.fa" in 61.2591 seconds and 153.9 Mi memory
2023-07-04 14:09:05.457889: Successfully ran: "cactus_analyseAssembly HG01106.1.sanitized.fa" in 59.4259 seconds and 154.0 Mi memory
2023-07-04 14:09:05.963968: Successfully ran: "cactus_analyseAssembly HG01978.1.sanitized.fa" in 57.982 seconds and 153.9 Mi memory
2023-07-04 14:09:06.438518: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 58.1725 seconds and 154.0 Mi memory
2023-07-04 14:09:06.538838: Successfully ran: "cactus_analyseAssembly HG02559.2.sanitized.fa" in 60.3242 seconds and 153.9 Mi memory
2023-07-04 14:09:06.744300: Successfully ran: "cactus_analyseAssembly HG01358.2.sanitized.fa" in 60.5664 seconds and 154.0 Mi memory
2023-07-04 14:09:07.850834: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 56.703 seconds and 51.9 Mi memory
2023-07-04 14:09:07.880406: Successfully ran: "cactus_analyseAssembly HG01123.2.sanitized.fa" in 58.5185 seconds and 153.9 Mi memory
2023-07-04 14:09:09.645804: Successfully ran: "cactus_analyseAssembly HG02055.2.sanitized.fa" in 56.4584 seconds and 153.9 Mi memory
2023-07-04 14:09:09.743011: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 58.7065 seconds and 153.9 Mi memory
2023-07-04 14:09:10.074693: Successfully ran: "cactus_analyseAssembly HG01175.2.sanitized.fa" in 56.548 seconds and 154.0 Mi memory
2023-07-04 14:09:11.132695: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 56.8579 seconds and 154.0 Mi memory
Got message from job at time 07-04-2023 14:09:54: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 306 Total-length: 3042496887 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 57982120 Median-sequence-length: 462950 Max-sequence-length: 134399994 Min-sequence-length: 17028

Got message from job at time 07-04-2023 14:10:40: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 456 Total-length: 3035143227 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 27 N50: 27014075 Median-sequence-length: 663001 Max-sequence-length: 83375334 Min-sequence-length: 16573

Got message from job at time 07-04-2023 14:10:40: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 437 Total-length: 3030589160 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 27 N50: 24061170 Median-sequence-length: 1521440 Max-sequence-length: 74715163 Min-sequence-length: 16569

Got message from job at time 07-04-2023 14:10:40: Assembly stats for HG03540.1: Input-sample: HG03540.1.sanitized.fa Total-sequences: 512 Total-length: 3065276644 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 34159233 Median-sequence-length: 130990 Max-sequence-length: 88867354 Min-sequence-length: 15269

Got message from job at time 07-04-2023 14:10:40: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 288 Total-length: 3010067136 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 47178056 Median-sequence-length: 435876 Max-sequence-length: 174832057 Min-sequence-length: 10285

Got message from job at time 07-04-2023 14:10:49: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 529 Total-length: 3049492048 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 60 N50: 24827663 Median-sequence-length: 395053 Max-sequence-length: 73220214 Min-sequence-length: 11489

Got message from job at time 07-04-2023 14:12:22: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 195 Total-length: 3099922541 Proportion-repeat-masked: 0.053242 ProportionNs: 0.053242 Total-Ns: 165045996 N50: 145138636 Median-sequence-length: 32032 Max-sequence-length: 248956422 Min-sequence-length: 970

Got message from job at time 07-04-2023 14:12:39: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 481 Total-length: 3037645976 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 70 N50: 24098322 Median-sequence-length: 1433578 Max-sequence-length: 66218776 Min-sequence-length: 18544

Got message from job at time 07-04-2023 14:12:39: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 297 Total-length: 3036701854 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41001116 Median-sequence-length: 901071 Max-sequence-length: 147827812 Min-sequence-length: 16567

Got message from job at time 07-04-2023 14:12:39: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 609 Total-length: 3026533161 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 44647564 Median-sequence-length: 88465 Max-sequence-length: 91759019 Min-sequence-length: 13339

Got message from job at time 07-04-2023 14:12:40: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 441 Total-length: 2932540871 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 52440137 Median-sequence-length: 120068 Max-sequence-length: 122693494 Min-sequence-length: 14888

Got message from job at time 07-04-2023 14:12:40: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 420 Total-length: 2925716157 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 61 N50: 34843587 Median-sequence-length: 352240 Max-sequence-length: 76518319 Min-sequence-length: 18623

Got message from job at time 07-04-2023 14:12:40: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 317 Total-length: 2923053911 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 45697985 Median-sequence-length: 424266 Max-sequence-length: 154533993 Min-sequence-length: 20433

Got message from job at time 07-04-2023 14:12:40: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 499 Total-length: 2947164001 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27544339 Median-sequence-length: 318507 Max-sequence-length: 89427290 Min-sequence-length: 17137

Got message from job at time 07-04-2023 14:12:40: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 429 Total-length: 3027203092 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 60 N50: 22438397 Median-sequence-length: 2026752 Max-sequence-length: 93682658 Min-sequence-length: 16567

Got message from job at time 07-04-2023 14:12:40: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 276 Total-length: 3025118465 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 48061544 Median-sequence-length: 664645 Max-sequence-length: 136238624 Min-sequence-length: 17439

Got message from job at time 07-04-2023 14:12:40: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 331 Total-length: 3059522785 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36975063 Median-sequence-length: 1297054 Max-sequence-length: 132639532 Min-sequence-length: 16570

Got message from job at time 07-04-2023 14:12:40: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 331 Total-length: 3022952778 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 81112077 Median-sequence-length: 117976 Max-sequence-length: 144198862 Min-sequence-length: 16569

Got message from job at time 07-04-2023 14:12:40: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 292 Total-length: 3046105980 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 60041455 Median-sequence-length: 149820 Max-sequence-length: 139507333 Min-sequence-length: 16569

Got message from job at time 07-04-2023 14:12:40: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 342 Total-length: 2930935689 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 58491195 Median-sequence-length: 271538 Max-sequence-length: 160280861 Min-sequence-length: 16416

Got message from job at time 07-04-2023 14:12:40: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 681 Total-length: 3041978016 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 25 N50: 40994157 Median-sequence-length: 78269 Max-sequence-length: 110972408 Min-sequence-length: 1280

Got message from job at time 07-04-2023 14:12:40: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 367 Total-length: 2950246117 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34122691 Median-sequence-length: 568725 Max-sequence-length: 118425108 Min-sequence-length: 16079

Got message from job at time 07-04-2023 14:12:40: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 399 Total-length: 2946102667 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 46513843 Median-sequence-length: 181764 Max-sequence-length: 108994640 Min-sequence-length: 14524

Got message from job at time 07-04-2023 14:12:40: Assembly stats for HG00735.1: Input-sample: HG00735.1.sanitized.fa Total-sequences: 299 Total-length: 3033541617 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 27 N50: 53422923 Median-sequence-length: 312077 Max-sequence-length: 159639682 Min-sequence-length: 19021

Got message from job at time 07-04-2023 14:12:40: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 323 Total-length: 3038320685 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 34 N50: 43942241 Median-sequence-length: 499599 Max-sequence-length: 177336230 Min-sequence-length: 14794

Got message from job at time 07-04-2023 14:12:40: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 620 Total-length: 3037441458 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 19382927 Median-sequence-length: 1035421 Max-sequence-length: 65435977 Min-sequence-length: 13791

Got message from job at time 07-04-2023 14:13:22: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 422 Total-length: 3033198064 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 20228813 Median-sequence-length: 1850702 Max-sequence-length: 83351920 Min-sequence-length: 16564

Got message from job at time 07-04-2023 14:13:22: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 632 Total-length: 3055382050 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 36 N50: 23127662 Median-sequence-length: 733795 Max-sequence-length: 114904728 Min-sequence-length: 16567

Got message from job at time 07-04-2023 14:13:22: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 260 Total-length: 3024156283 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 57249657 Median-sequence-length: 157655 Max-sequence-length: 111030476 Min-sequence-length: 17309

Got message from job at time 07-04-2023 14:13:22: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 295 Total-length: 3025313608 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 45122217 Median-sequence-length: 791004 Max-sequence-length: 132678729 Min-sequence-length: 16562

Got message from job at time 07-04-2023 14:13:22: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 365 Total-length: 3030026811 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34803293 Median-sequence-length: 887214 Max-sequence-length: 126766583 Min-sequence-length: 17499

Got message from job at time 07-04-2023 14:13:23: Assembly stats for HG03453.1: Input-sample: HG03453.1.sanitized.fa Total-sequences: 480 Total-length: 3050441176 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27053039 Median-sequence-length: 422884 Max-sequence-length: 63913288 Min-sequence-length: 16574

Got message from job at time 07-04-2023 14:13:23: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 272 Total-length: 3035845582 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 47714433 Median-sequence-length: 357316 Max-sequence-length: 142826854 Min-sequence-length: 16569

Got message from job at time 07-04-2023 14:13:23: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 253 Total-length: 3023026071 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 50294217 Median-sequence-length: 566657 Max-sequence-length: 141780111 Min-sequence-length: 16570

Got message from job at time 07-04-2023 14:13:23: Assembly stats for HG00741.1: Input-sample: HG00741.1.sanitized.fa Total-sequences: 289 Total-length: 3029878036 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 51040418 Median-sequence-length: 871565 Max-sequence-length: 146623042 Min-sequence-length: 21133

Got message from job at time 07-04-2023 14:13:23: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 495 Total-length: 3023922307 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 18860066 Median-sequence-length: 1459597 Max-sequence-length: 68991370 Min-sequence-length: 16569

Got message from job at time 07-04-2023 14:13:23: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 445 Total-length: 3026115826 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23115113 Median-sequence-length: 1623010 Max-sequence-length: 78425607 Min-sequence-length: 16567

Got message from job at time 07-04-2023 14:13:24: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 427 Total-length: 3043232268 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 34 N50: 57096483 Median-sequence-length: 65482 Max-sequence-length: 111275616 Min-sequence-length: 15397

Got message from job at time 07-04-2023 14:13:24: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 236 Total-length: 3012710110 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 50125412 Median-sequence-length: 1090702 Max-sequence-length: 184364754 Min-sequence-length: 27101

Got message from job at time 07-04-2023 14:13:24: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 283 Total-length: 3030662429 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 55069743 Median-sequence-length: 436715 Max-sequence-length: 134268502 Min-sequence-length: 16569

Got message from job at time 07-04-2023 14:13:25: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 439 Total-length: 3047998942 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 26379428 Median-sequence-length: 1048038 Max-sequence-length: 90181544 Min-sequence-length: 16571

Got message from job at time 07-04-2023 14:13:25: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 271 Total-length: 3055692855 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40078400 Median-sequence-length: 1818907 Max-sequence-length: 96357670 Min-sequence-length: 15321

Got message from job at time 07-04-2023 14:13:25: Assembly stats for NA20129.1: Input-sample: NA20129.1.sanitized.fa Total-sequences: 481 Total-length: 3029071557 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22424799 Median-sequence-length: 1021287 Max-sequence-length: 58332026 Min-sequence-length: 13663

Got message from job at time 07-04-2023 14:13:25: Assembly stats for NA18906.1: Input-sample: NA18906.1.sanitized.fa Total-sequences: 304 Total-length: 3046330261 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43522948 Median-sequence-length: 531374 Max-sequence-length: 109207271 Min-sequence-length: 18304

Got message from job at time 07-04-2023 14:13:26: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 532 Total-length: 3053354263 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 29253507 Median-sequence-length: 127578 Max-sequence-length: 76908017 Min-sequence-length: 10240

Got message from job at time 07-04-2023 14:13:26: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 448 Total-length: 3045049146 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 52 N50: 21149676 Median-sequence-length: 1449846 Max-sequence-length: 92880013 Min-sequence-length: 16371

Got message from job at time 07-04-2023 14:13:27: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 244 Total-length: 3025961049 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 53717995 Median-sequence-length: 1211267 Max-sequence-length: 152507898 Min-sequence-length: 16563

Got message from job at time 07-04-2023 14:13:28: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 399 Total-length: 3035677523 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 19 N50: 32308382 Median-sequence-length: 882192 Max-sequence-length: 92753964 Min-sequence-length: 16567

Got message from job at time 07-04-2023 14:13:28: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 445 Total-length: 2935645968 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 34383521 Median-sequence-length: 307068 Max-sequence-length: 138786403 Min-sequence-length: 17167

Got message from job at time 07-04-2023 14:13:29: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 480 Total-length: 3034915351 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 106 N50: 24250446 Median-sequence-length: 606626 Max-sequence-length: 89380104 Min-sequence-length: 16571

Got message from job at time 07-04-2023 14:13:38: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 461 Total-length: 3049134634 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28882481 Median-sequence-length: 230677 Max-sequence-length: 114505151 Min-sequence-length: 16570

Got message from job at time 07-04-2023 14:14:28: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 324 Total-length: 2915178237 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 49858426 Median-sequence-length: 455771 Max-sequence-length: 116988299 Min-sequence-length: 16544

Got message from job at time 07-04-2023 14:14:30: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 503 Total-length: 3047149239 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29113777 Median-sequence-length: 292530 Max-sequence-length: 87304453 Min-sequence-length: 15282

Got message from job at time 07-04-2023 14:14:31: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 315 Total-length: 3030735652 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 112 N50: 36535860 Median-sequence-length: 1591378 Max-sequence-length: 118576810 Min-sequence-length: 16568

Got message from job at time 07-04-2023 14:14:33: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 486 Total-length: 3024505444 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24285731 Median-sequence-length: 702954 Max-sequence-length: 75661757 Min-sequence-length: 17375

Got message from job at time 07-04-2023 14:14:35: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 348 Total-length: 3053585067 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29077043 Median-sequence-length: 1213506 Max-sequence-length: 82917119 Min-sequence-length: 16566

Got message from job at time 07-04-2023 14:14:41: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 566 Total-length: 3019578985 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 43 N50: 18216950 Median-sequence-length: 896685 Max-sequence-length: 60494670 Min-sequence-length: 1463

Got message from job at time 07-04-2023 14:14:41: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 329 Total-length: 3040531780 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 59525942 Median-sequence-length: 177353 Max-sequence-length: 156750519 Min-sequence-length: 16567

Got message from job at time 07-04-2023 14:14:43: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 284 Total-length: 2927007346 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 57173280 Median-sequence-length: 234903 Max-sequence-length: 134247767 Min-sequence-length: 18269

Got message from job at time 07-04-2023 14:14:43: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 334 Total-length: 3029587694 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 48753445 Median-sequence-length: 532604 Max-sequence-length: 137812121 Min-sequence-length: 16570

Got message from job at time 07-04-2023 14:14:43: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 345 Total-length: 3028987351 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31384221 Median-sequence-length: 1977373 Max-sequence-length: 118534722 Min-sequence-length: 16568

Got message from job at time 07-04-2023 14:14:43: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 320 Total-length: 3033479640 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44773628 Median-sequence-length: 637173 Max-sequence-length: 134206333 Min-sequence-length: 16096

Got message from job at time 07-04-2023 14:14:43: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 247 Total-length: 3051869401 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 60487953 Median-sequence-length: 848413 Max-sequence-length: 128128700 Min-sequence-length: 16571

Got message from job at time 07-04-2023 14:14:43: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 435 Total-length: 3048418776 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 30474809 Median-sequence-length: 385656 Max-sequence-length: 96320881 Min-sequence-length: 16569

Got message from job at time 07-04-2023 14:14:44: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 473 Total-length: 2921876128 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 30220240 Median-sequence-length: 437055 Max-sequence-length: 103539819 Min-sequence-length: 18556

Got message from job at time 07-04-2023 14:14:44: Assembly stats for HG02622.1: Input-sample: HG02622.1.sanitized.fa Total-sequences: 270 Total-length: 3043426064 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 27 N50: 51206351 Median-sequence-length: 208163 Max-sequence-length: 103756111 Min-sequence-length: 20603

Got message from job at time 07-04-2023 14:14:44: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 369 Total-length: 3067004974 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 55482364 Median-sequence-length: 178762 Max-sequence-length: 158663023 Min-sequence-length: 15709

Got message from job at time 07-04-2023 14:14:44: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 487 Total-length: 3026089995 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41874143 Median-sequence-length: 156837 Max-sequence-length: 111343792 Min-sequence-length: 14344

Got message from job at time 07-04-2023 14:14:44: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 497 Total-length: 3041877443 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 27 N50: 25380071 Median-sequence-length: 215104 Max-sequence-length: 83920630 Min-sequence-length: 16571

Got message from job at time 07-04-2023 14:14:44: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 286 Total-length: 3055071491 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 52814149 Median-sequence-length: 569477 Max-sequence-length: 137440300 Min-sequence-length: 21638

Got message from job at time 07-04-2023 14:14:44: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 817 Total-length: 2937649060 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 19770268 Median-sequence-length: 66644 Max-sequence-length: 63272134 Min-sequence-length: 16939

Got message from job at time 07-04-2023 14:14:44: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 25 Total-length: 3112059456 Proportion-repeat-masked: 0.010794 ProportionNs: 0.010794 Total-Ns: 33591060 N50: 150617247 Median-sequence-length: 133324548 Max-sequence-length: 248387328 Min-sequence-length: 16569

Got message from job at time 07-04-2023 14:14:44: Assembly stats for HG01071.1: Input-sample: HG01071.1.sanitized.fa Total-sequences: 330 Total-length: 3057222025 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 55592407 Median-sequence-length: 559878 Max-sequence-length: 148182694 Min-sequence-length: 22629

Got message from job at time 07-04-2023 14:14:44: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 244 Total-length: 3037795105 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 56474489 Median-sequence-length: 929426 Max-sequence-length: 123737347 Min-sequence-length: 16563

Got message from job at time 07-04-2023 14:14:44: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 436 Total-length: 2908728425 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 29118474 Median-sequence-length: 302837 Max-sequence-length: 78533993 Min-sequence-length: 16754

Got message from job at time 07-04-2023 14:14:44: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 306 Total-length: 3019590183 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 34 N50: 35182712 Median-sequence-length: 2118581 Max-sequence-length: 108660916 Min-sequence-length: 16568

Got message from job at time 07-04-2023 14:14:44: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 340 Total-length: 3012822948 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 54362305 Median-sequence-length: 334099 Max-sequence-length: 132467270 Min-sequence-length: 16571

Got message from job at time 07-04-2023 14:14:44: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 618 Total-length: 2923665925 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20158908 Median-sequence-length: 417320 Max-sequence-length: 51967569 Min-sequence-length: 15765

Got message from job at time 07-04-2023 14:14:53: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 307 Total-length: 3020563005 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54639450 Median-sequence-length: 288181 Max-sequence-length: 130516847 Min-sequence-length: 16580

Got message from job at time 07-04-2023 14:14:53: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 423 Total-length: 3036136215 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39938933 Median-sequence-length: 241544 Max-sequence-length: 104115855 Min-sequence-length: 14930

Got message from job at time 07-04-2023 14:14:53: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 292 Total-length: 3031071346 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 59044574 Median-sequence-length: 456462 Max-sequence-length: 121805943 Min-sequence-length: 16566

Got message from job at time 07-04-2023 14:14:53: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 346 Total-length: 3032420282 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 56644858 Median-sequence-length: 350422 Max-sequence-length: 157897625 Min-sequence-length: 14859

Got message from job at time 07-04-2023 14:14:56: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 501 Total-length: 3036587447 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 20564675 Median-sequence-length: 1523674 Max-sequence-length: 70476909 Min-sequence-length: 19659

Got message from job at time 07-04-2023 14:14:57: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 378 Total-length: 2913263982 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44250376 Median-sequence-length: 136759 Max-sequence-length: 132853766 Min-sequence-length: 17906

Got message from job at time 07-04-2023 14:14:57: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 641 Total-length: 2943627449 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 19525040 Median-sequence-length: 606509 Max-sequence-length: 116424585 Min-sequence-length: 18992

Got message from job at time 07-04-2023 14:14:57: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 258 Total-length: 3035735720 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54936949 Median-sequence-length: 1003236 Max-sequence-length: 135796793 Min-sequence-length: 16569

Got message from job at time 07-04-2023 14:14:57: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 519 Total-length: 3049588884 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 45 N50: 27177738 Median-sequence-length: 369109 Max-sequence-length: 76194477 Min-sequence-length: 16516

Got message from job at time 07-04-2023 14:14:57: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 436 Total-length: 3014197469 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 44719827 Median-sequence-length: 143538 Max-sequence-length: 122867566 Min-sequence-length: 14072

Got message from job at time 07-04-2023 14:15:05: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 287 Total-length: 2905948993 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54673245 Median-sequence-length: 604462 Max-sequence-length: 105803176 Min-sequence-length: 17336

Got message from job at time 07-04-2023 14:15:10: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 608 Total-length: 3029616838 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 142 N50: 17440620 Median-sequence-length: 904609 Max-sequence-length: 53374262 Min-sequence-length: 13186

Issued job 'minigraph_construct_workflow' kind-minigraph_construct_workflow/instance-51f6y7c_ v1 with job batch system ID: 92 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_sketch' kind-mash_sketch/instance-8898yhm8 v1 with job batch system ID: 93 and disk: 5.8 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-04 14:15:35.389306: Running the command: "mash sketch GRCh38.fa"
2023-07-04 14:16:53.648499: Successfully ran: "mash sketch GRCh38.fa" in 78.2579 seconds and 478.0 Mi memory
Issued job 'mash_dist' kind-mash_dist/instance-14kumdkh v1 with job batch system ID: 94 and disk: 14.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-c_x_7vw7 v1 with job batch system ID: 95 and disk: 14.2 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-8phlkode v1 with job batch system ID: 96 and disk: 14.4 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-cvgsungj v1 with job batch system ID: 97 and disk: 14.4 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-ooa6i2qw v1 with job batch system ID: 98 and disk: 14.1 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-lwhb82l1 v1 with job batch system ID: 99 and disk: 14.2 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-tbe3zxuh v1 with job batch system ID: 100 and disk: 14.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-qqed5u27 v1 with job batch system ID: 101 and disk: 14.1 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-k301pamc v1 with job batch system ID: 102 and disk: 14.1 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-k0gvhs3s v1 with job batch system ID: 103 and disk: 14.4 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-h18e1cnf v1 with job batch system ID: 104 and disk: 14.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-qxcxzfvr v1 with job batch system ID: 105 and disk: 14.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-f2dnzawo v1 with job batch system ID: 106 and disk: 14.1 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-b4inv9u1 v1 with job batch system ID: 107 and disk: 14.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-jh6a5y0r v1 with job batch system ID: 108 and disk: 14.4 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-5wwj6p17 v1 with job batch system ID: 109 and disk: 14.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-xq46irit v1 with job batch system ID: 110 and disk: 14.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-xk2kqq8s v1 with job batch system ID: 111 and disk: 14.4 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-n70taja_ v1 with job batch system ID: 112 and disk: 14.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-yanfboy8 v1 with job batch system ID: 113 and disk: 14.1 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-4b0apwdi v1 with job batch system ID: 114 and disk: 14.4 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-se8cq8xh v1 with job batch system ID: 115 and disk: 14.4 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-0tiztwx4 v1 with job batch system ID: 116 and disk: 14.4 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-8xax2l42 v1 with job batch system ID: 117 and disk: 14.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-hetkx9uo v1 with job batch system ID: 118 and disk: 14.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-99i15jtj v1 with job batch system ID: 119 and disk: 14.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-wqhewlii v1 with job batch system ID: 120 and disk: 14.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-iiutwpwx v1 with job batch system ID: 121 and disk: 14.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-il1_ttv5 v1 with job batch system ID: 122 and disk: 14.2 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-381w9f9y v1 with job batch system ID: 123 and disk: 14.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-odchsmy1 v1 with job batch system ID: 124 and disk: 14.1 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-ieifad_d v1 with job batch system ID: 125 and disk: 14.1 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-ebv2isow v1 with job batch system ID: 126 and disk: 14.1 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-p7zamxv1 v1 with job batch system ID: 127 and disk: 14.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-h3e6ynlp v1 with job batch system ID: 128 and disk: 14.4 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-czik4goe v1 with job batch system ID: 129 and disk: 14.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-v8050nfa v1 with job batch system ID: 130 and disk: 14.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-qp9h1fii v1 with job batch system ID: 131 and disk: 14.1 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-68cnqwfc v1 with job batch system ID: 132 and disk: 14.2 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-kwkuqyiy v1 with job batch system ID: 133 and disk: 14.2 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-ia0285op v1 with job batch system ID: 134 and disk: 14.1 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-i_5vsbus v1 with job batch system ID: 135 and disk: 14.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-h_uwo0_q v1 with job batch system ID: 136 and disk: 14.1 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'mash_dist' kind-mash_dist/instance-vzpbjqry v1 with job batch system ID: 137 and disk: 14.1 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-04 14:25:05.684165: Running the command: "mash dist HG01243.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:26:18.292042: Running the command: "mash dist HG03486.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:27:17.414749: Running the command: "mash dist HG01258.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:27:17.734481: Running the command: "mash dist HG01109.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:27:17.836161: Running the command: "mash dist HG01928.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:27:19.329027: Running the command: "mash dist HG01358.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:27:20.720587: Running the command: "mash dist HG02572.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:27:20.867930: Running the command: "mash dist HG03098.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:27:25.921730: Running the command: "mash dist HG01361.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:27:26.062515: Running the command: "mash dist HG02257.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:27:27.349847: Running the command: "mash dist NA20129.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:27:28.034586: Running the command: "mash dist HG02148.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:29:31.049913: Successfully ran: "mash dist HG01243.1.fa.cat GRCh38.fa.msh" in 265.3644 seconds and 260.3 Mi memory
2023-07-04 14:29:31.050126: Running the command: "mash dist HG01243.1.fa GRCh38.fa.msh"
2023-07-04 14:30:30.897600: Running the command: "mash dist HG00621.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:30:32.296679: Running the command: "mash dist HG03492.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:30:32.914047: Running the command: "mash dist HG01106.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:30:33.492856: Running the command: "mash dist HG03579.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:30:35.583379: Running the command: "mash dist HG02055.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:30:35.608543: Successfully ran: "mash dist HG03486.1.fa.cat GRCh38.fa.msh" in 257.3151 seconds and 204.5 Mi memory
2023-07-04 14:30:35.608762: Running the command: "mash dist HG03486.1.fa GRCh38.fa.msh"
2023-07-04 14:30:35.660548: Running the command: "mash dist HG02717.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:30:50.367438: Running the command: "mash dist HG01952.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:30:57.835380: Running the command: "mash dist HG02818.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:01.814638: Running the command: "mash dist HG00741.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:01.888589: Running the command: "mash dist HG02630.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:02.036140: Running the command: "mash dist NA21309.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:02.444608: Running the command: "mash dist HG02723.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:02.663550: Running the command: "mash dist HG02559.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:04.717863: Running the command: "mash dist HG01175.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:04.740030: Running the command: "mash dist HG00673.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:04.907881: Running the command: "mash dist HG03540.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:04.960626: Running the command: "mash dist HG00733.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:05.017726: Running the command: "mash dist HG02109.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:05.694329: Running the command: "mash dist HG02886.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:05.865181: Running the command: "mash dist HG02486.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:06.705163: Running the command: "mash dist HG02145.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:07.477478: Running the command: "mash dist HG02080.2.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:07.560346: Running the command: "mash dist HG01123.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:07.696267: Running the command: "mash dist HG01978.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:07.828324: Running the command: "mash dist HG00438.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:08.007746: Running the command: "mash dist NA18906.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:08.200498: Running the command: "mash dist HG01071.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:08.374184: Running the command: "mash dist HG02622.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:09.171942: Running the command: "mash dist HG00735.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:09.194384: Running the command: "mash dist HG01891.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:10.372500: Running the command: "mash dist HG03453.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:10.793702: Running the command: "mash dist HG03516.1.fa.cat GRCh38.fa.msh"
2023-07-04 14:31:20.083984: Successfully ran: "mash dist HG01109.1.fa.cat GRCh38.fa.msh" in 242.3128 seconds and 221.0 Mi memory
2023-07-04 14:31:20.084201: Running the command: "mash dist HG01109.1.fa GRCh38.fa.msh"
2023-07-04 14:31:20.993136: Successfully ran: "mash dist HG01258.1.fa.cat GRCh38.fa.msh" in 243.4611 seconds and 335.9 Mi memory
2023-07-04 14:31:20.993437: Running the command: "mash dist HG01258.1.fa GRCh38.fa.msh"
2023-07-04 14:31:21.674882: Successfully ran: "mash dist HG01928.1.fa.cat GRCh38.fa.msh" in 243.7724 seconds and 327.5 Mi memory
2023-07-04 14:31:21.675840: Running the command: "mash dist HG01928.1.fa GRCh38.fa.msh"
2023-07-04 14:31:22.089984: Successfully ran: "mash dist HG01358.1.fa.cat GRCh38.fa.msh" in 242.7367 seconds and 297.1 Mi memory
2023-07-04 14:31:22.090202: Running the command: "mash dist HG01358.1.fa GRCh38.fa.msh"
2023-07-04 14:31:22.914538: Successfully ran: "mash dist HG02572.1.fa.cat GRCh38.fa.msh" in 242.1813 seconds and 255.4 Mi memory
2023-07-04 14:31:22.914751: Running the command: "mash dist HG02572.1.fa GRCh38.fa.msh"
2023-07-04 14:31:25.465087: Successfully ran: "mash dist HG03098.1.fa.cat GRCh38.fa.msh" in 244.536 seconds and 293.4 Mi memory
2023-07-04 14:31:25.465297: Running the command: "mash dist HG03098.1.fa GRCh38.fa.msh"
2023-07-04 14:31:27.898714: Successfully ran: "mash dist HG01243.1.fa GRCh38.fa.msh" in 116.8476 seconds and 170.3 Mi memory
2023-07-04 14:31:32.307424: Successfully ran: "mash dist HG01361.1.fa.cat GRCh38.fa.msh" in 246.3841 seconds and 350.1 Mi memory
2023-07-04 14:31:32.307636: Running the command: "mash dist HG01361.1.fa GRCh38.fa.msh"
2023-07-04 14:31:32.643119: Successfully ran: "mash dist HG02257.1.fa.cat GRCh38.fa.msh" in 246.5339 seconds and 283.6 Mi memory
2023-07-04 14:31:32.643334: Running the command: "mash dist HG02257.1.fa GRCh38.fa.msh"
2023-07-04 14:31:32.698218: Successfully ran: "mash dist NA20129.1.fa.cat GRCh38.fa.msh" in 245.3436 seconds and 211.4 Mi memory
2023-07-04 14:31:32.698427: Running the command: "mash dist NA20129.1.fa GRCh38.fa.msh"
2023-07-04 14:31:33.906509: Successfully ran: "mash dist HG02148.1.fa.cat GRCh38.fa.msh" in 245.8687 seconds and 246.4 Mi memory
2023-07-04 14:31:33.906727: Running the command: "mash dist HG02148.1.fa GRCh38.fa.msh"
mash distance of HG01243.1 (size = 2908728425) to reference GRCh38 = 0.0018924 sample distance = 0.000830728
2023-07-04 14:32:18.641280: Running the command: "mash dist HG01243.2.fa GRCh38.fa.msh"
2023-07-04 14:32:35.572386: Successfully ran: "mash dist HG03486.1.fa GRCh38.fa.msh" in 119.9626 seconds and 170.4 Mi memory
2023-07-04 14:33:12.892278: Successfully ran: "mash dist HG01109.1.fa GRCh38.fa.msh" in 112.8069 seconds and 216.5 Mi memory
2023-07-04 14:33:15.004756: Successfully ran: "mash dist HG01258.1.fa GRCh38.fa.msh" in 114.0102 seconds and 252.0 Mi memory
2023-07-04 14:33:15.503031: Successfully ran: "mash dist HG01928.1.fa GRCh38.fa.msh" in 113.8261 seconds and 304.1 Mi memory
2023-07-04 14:33:15.508093: Successfully ran: "mash dist HG02572.1.fa GRCh38.fa.msh" in 112.5915 seconds and 255.4 Mi memory
2023-07-04 14:33:16.261055: Successfully ran: "mash dist HG01358.1.fa GRCh38.fa.msh" in 114.1697 seconds and 253.8 Mi memory
2023-07-04 14:33:20.128463: Successfully ran: "mash dist HG03098.1.fa GRCh38.fa.msh" in 114.6614 seconds and 293.3 Mi memory
mash distance of HG03486.1 (size = 3049588884) to reference GRCh38 = 0.0011089 sample distance = 0.000956583
2023-07-04 14:33:29.966910: Running the command: "mash dist HG03486.2.fa GRCh38.fa.msh"
2023-07-04 14:33:30.213603: Successfully ran: "mash dist HG01361.1.fa GRCh38.fa.msh" in 117.9047 seconds and 350.1 Mi memory
2023-07-04 14:33:30.284043: Successfully ran: "mash dist NA20129.1.fa GRCh38.fa.msh" in 117.584 seconds and 140.2 Mi memory
2023-07-04 14:33:31.494650: Successfully ran: "mash dist HG02257.1.fa GRCh38.fa.msh" in 118.8502 seconds and 283.4 Mi memory
2023-07-04 14:33:32.836491: Successfully ran: "mash dist HG02148.1.fa GRCh38.fa.msh" in 118.9286 seconds and 246.3 Mi memory
mash distance of HG01109.1 (size = 2921876128) to reference GRCh38 = 0.00162709 sample distance = 0.000680979
2023-07-04 14:34:15.831822: Running the command: "mash dist HG01109.2.fa GRCh38.fa.msh"
mash distance of HG01258.1 (size = 2915178237) to reference GRCh38 = 0.00173271 sample distance = 0.000680979
2023-07-04 14:34:18.515047: Running the command: "mash dist HG01258.2.fa GRCh38.fa.msh"
mash distance of HG02572.1 (size = 2943627449) to reference GRCh38 = 0.00224371 sample distance = 0.000805673
2023-07-04 14:34:19.567512: Running the command: "mash dist HG02572.2.fa GRCh38.fa.msh"
mash distance of HG01928.1 (size = 2923053911) to reference GRCh38 = 0.001839 sample distance = 0.000680979
2023-07-04 14:34:20.108440: Running the command: "mash dist HG01928.2.fa GRCh38.fa.msh"
mash distance of HG01358.1 (size = 2932540871) to reference GRCh38 = 0.00181236 sample distance = 0.000557238
2023-07-04 14:34:20.774330: Running the command: "mash dist HG01358.2.fa GRCh38.fa.msh"
2023-07-04 14:34:23.203966: Successfully ran: "mash dist HG01243.2.fa GRCh38.fa.msh" in 124.5612 seconds and 229.3 Mi memory
mash distance of HG03098.1 (size = 2935645968) to reference GRCh38 = 0.00197282 sample distance = 0.000880953
2023-07-04 14:34:24.588302: Running the command: "mash dist HG03098.2.fa GRCh38.fa.msh"
mash distance of NA20129.1 (size = 3029071557) to reference GRCh38 = 0.00113443 sample distance = 0.00103256
2023-07-04 14:34:36.751760: Running the command: "mash dist NA20129.2.fa GRCh38.fa.msh"
mash distance of HG01361.1 (size = 3010067136) to reference GRCh38 = 0.000656154 sample distance = 0.00058191
2023-07-04 14:34:37.223657: Running the command: "mash dist HG01361.2.fa GRCh38.fa.msh"
mash distance of HG02257.1 (size = 3042496887) to reference GRCh38 = 0.000730741 sample distance = 0.000830728
2023-07-04 14:34:38.589567: Running the command: "mash dist HG02257.2.fa GRCh38.fa.msh"
mash distance of HG02148.1 (size = 3026089995) to reference GRCh38 = 0.000830728 sample distance = 0.000830728
2023-07-04 14:34:40.761935: Running the command: "mash dist HG02148.2.fa GRCh38.fa.msh"
2023-07-04 14:35:12.734891: Successfully ran: "mash dist HG03492.1.fa.cat GRCh38.fa.msh" in 280.4113 seconds and 165.9 Mi memory
2023-07-04 14:35:12.735821: Running the command: "mash dist HG03492.1.fa GRCh38.fa.msh"
2023-07-04 14:35:13.715751: Successfully ran: "mash dist HG00621.1.fa.cat GRCh38.fa.msh" in 282.8168 seconds and 301.9 Mi memory
2023-07-04 14:35:13.715927: Running the command: "mash dist HG00621.1.fa GRCh38.fa.msh"
2023-07-04 14:35:15.002735: Successfully ran: "mash dist HG01106.1.fa.cat GRCh38.fa.msh" in 282.0872 seconds and 306.5 Mi memory
2023-07-04 14:35:15.002911: Running the command: "mash dist HG01106.1.fa GRCh38.fa.msh"
2023-07-04 14:35:16.070818: Successfully ran: "mash dist HG03579.1.fa.cat GRCh38.fa.msh" in 282.5767 seconds and 204.3 Mi memory
2023-07-04 14:35:16.071771: Running the command: "mash dist HG03579.1.fa GRCh38.fa.msh"
2023-07-04 14:35:18.428523: Successfully ran: "mash dist HG02055.1.fa.cat GRCh38.fa.msh" in 282.844 seconds and 257.4 Mi memory
2023-07-04 14:35:18.428695: Running the command: "mash dist HG02055.1.fa GRCh38.fa.msh"
2023-07-04 14:35:18.717746: Successfully ran: "mash dist HG02717.1.fa.cat GRCh38.fa.msh" in 283.0557 seconds and 372.6 Mi memory
2023-07-04 14:35:18.717920: Running the command: "mash dist HG02717.1.fa GRCh38.fa.msh"
mash distance of HG01243.2 (size = 3028987351) to reference GRCh38 = 0.000906124 sample distance = 0.000830728
2023-07-04 14:35:21.678386: Successfully ran: "mash dist HG01952.1.fa.cat GRCh38.fa.msh" in 271.283 seconds and 280.4 Mi memory
2023-07-04 14:35:21.678561: Running the command: "mash dist HG01952.1.fa GRCh38.fa.msh"
2023-07-04 14:35:26.154391: Successfully ran: "mash dist HG02818.1.fa.cat GRCh38.fa.msh" in 268.227 seconds and 158.6 Mi memory
2023-07-04 14:35:26.154564: Running the command: "mash dist HG02818.1.fa GRCh38.fa.msh"
2023-07-04 14:35:27.133236: Successfully ran: "mash dist HG00673.1.fa.cat GRCh38.fa.msh" in 262.392 seconds and 192.1 Mi memory
2023-07-04 14:35:27.133408: Running the command: "mash dist HG00673.1.fa GRCh38.fa.msh"
2023-07-04 14:35:27.826393: Successfully ran: "mash dist HG02486.1.fa.cat GRCh38.fa.msh" in 261.9598 seconds and 311.7 Mi memory
2023-07-04 14:35:27.826566: Running the command: "mash dist HG02486.1.fa GRCh38.fa.msh"
2023-07-04 14:35:28.079584: Successfully ran: "mash dist HG02630.1.fa.cat GRCh38.fa.msh" in 266.1899 seconds and 194.0 Mi memory
2023-07-04 14:35:28.079761: Running the command: "mash dist HG02630.1.fa GRCh38.fa.msh"
2023-07-04 14:35:28.133326: Successfully ran: "mash dist NA21309.1.fa.cat GRCh38.fa.msh" in 266.0961 seconds and 168.4 Mi memory
2023-07-04 14:35:28.133501: Running the command: "mash dist NA21309.1.fa GRCh38.fa.msh"
2023-07-04 14:35:28.147951: Successfully ran: "mash dist HG02145.1.fa.cat GRCh38.fa.msh" in 261.4416 seconds and 176.3 Mi memory
2023-07-04 14:35:28.148127: Running the command: "mash dist HG02145.1.fa GRCh38.fa.msh"
2023-07-04 14:35:28.388333: Successfully ran: "mash dist HG02723.1.fa.cat GRCh38.fa.msh" in 265.925 seconds and 213.2 Mi memory
2023-07-04 14:35:28.388509: Running the command: "mash dist HG02723.1.fa GRCh38.fa.msh"
2023-07-04 14:35:28.840969: Successfully ran: "mash dist HG02559.1.fa.cat GRCh38.fa.msh" in 266.1762 seconds and 333.2 Mi memory
2023-07-04 14:35:28.841241: Running the command: "mash dist HG02559.1.fa GRCh38.fa.msh"
2023-07-04 14:35:29.217953: Successfully ran: "mash dist HG00741.1.fa.cat GRCh38.fa.msh" in 267.4014 seconds and 311.0 Mi memory
2023-07-04 14:35:29.218132: Running the command: "mash dist HG00741.1.fa GRCh38.fa.msh"
2023-07-04 14:35:30.052129: Successfully ran: "mash dist HG00733.1.fa.cat GRCh38.fa.msh" in 265.0904 seconds and 243.0 Mi memory
2023-07-04 14:35:30.052302: Running the command: "mash dist HG00733.1.fa GRCh38.fa.msh"
2023-07-04 14:35:30.069984: Successfully ran: "mash dist HG02109.1.fa.cat GRCh38.fa.msh" in 265.0508 seconds and 183.2 Mi memory
2023-07-04 14:35:30.070164: Running the command: "mash dist HG02109.1.fa GRCh38.fa.msh"
2023-07-04 14:35:30.156885: Successfully ran: "mash dist HG01175.1.fa.cat GRCh38.fa.msh" in 265.4375 seconds and 267.5 Mi memory
2023-07-04 14:35:30.157163: Running the command: "mash dist HG01175.1.fa GRCh38.fa.msh"
2023-07-04 14:35:32.030496: Successfully ran: "mash dist HG01123.1.fa.cat GRCh38.fa.msh" in 264.469 seconds and 286.7 Mi memory
2023-07-04 14:35:32.030677: Running the command: "mash dist HG01123.1.fa GRCh38.fa.msh"
2023-07-04 14:35:32.501890: Successfully ran: "mash dist HG03540.1.fa.cat GRCh38.fa.msh" in 267.5929 seconds and 218.4 Mi memory
2023-07-04 14:35:32.502066: Running the command: "mash dist HG03540.1.fa GRCh38.fa.msh"
2023-07-04 14:35:32.816382: Successfully ran: "mash dist HG02886.1.fa.cat GRCh38.fa.msh" in 267.1167 seconds and 250.2 Mi memory
2023-07-04 14:35:32.816555: Running the command: "mash dist HG02886.1.fa GRCh38.fa.msh"
2023-07-04 14:35:33.025911: Successfully ran: "mash dist HG02080.2.fa.cat GRCh38.fa.msh" in 265.5473 seconds and 190.4 Mi memory
2023-07-04 14:35:33.026087: Running the command: "mash dist HG02080.2.fa GRCh38.fa.msh"
2023-07-04 14:35:33.478996: Successfully ran: "mash dist HG00438.1.fa.cat GRCh38.fa.msh" in 265.6496 seconds and 291.3 Mi memory
2023-07-04 14:35:33.479172: Running the command: "mash dist HG00438.1.fa GRCh38.fa.msh"
2023-07-04 14:35:34.700438: Successfully ran: "mash dist HG03486.2.fa GRCh38.fa.msh" in 124.7245 seconds and 199.6 Mi memory
2023-07-04 14:35:35.006877: Successfully ran: "mash dist HG01978.1.fa.cat GRCh38.fa.msh" in 267.3091 seconds and 285.8 Mi memory
2023-07-04 14:35:35.007648: Running the command: "mash dist HG01978.1.fa GRCh38.fa.msh"
2023-07-04 14:35:35.241283: Successfully ran: "mash dist HG01891.1.fa.cat GRCh38.fa.msh" in 266.0456 seconds and 308.3 Mi memory
2023-07-04 14:35:35.241562: Running the command: "mash dist HG01891.1.fa GRCh38.fa.msh"
2023-07-04 14:35:35.365793: Successfully ran: "mash dist HG01071.1.fa.cat GRCh38.fa.msh" in 267.1641 seconds and 385.8 Mi memory
2023-07-04 14:35:35.365969: Running the command: "mash dist HG01071.1.fa GRCh38.fa.msh"
2023-07-04 14:35:35.433581: Successfully ran: "mash dist HG00735.1.fa.cat GRCh38.fa.msh" in 266.2602 seconds and 307.6 Mi memory
2023-07-04 14:35:35.433765: Running the command: "mash dist HG00735.1.fa GRCh38.fa.msh"
2023-07-04 14:35:35.701473: Successfully ran: "mash dist NA18906.1.fa.cat GRCh38.fa.msh" in 267.6922 seconds and 237.4 Mi memory
2023-07-04 14:35:35.701650: Running the command: "mash dist NA18906.1.fa GRCh38.fa.msh"
2023-07-04 14:35:35.775175: Successfully ran: "mash dist HG02622.1.fa.cat GRCh38.fa.msh" in 267.3996 seconds and 300.1 Mi memory
2023-07-04 14:35:35.775347: Running the command: "mash dist HG02622.1.fa GRCh38.fa.msh"
2023-07-04 14:35:37.788193: Successfully ran: "mash dist HG03453.1.fa.cat GRCh38.fa.msh" in 267.4146 seconds and 205.1 Mi memory
2023-07-04 14:35:37.788370: Running the command: "mash dist HG03453.1.fa GRCh38.fa.msh"
2023-07-04 14:35:38.161953: Successfully ran: "mash dist HG03516.1.fa.cat GRCh38.fa.msh" in 267.3668 seconds and 316.0 Mi memory
2023-07-04 14:35:38.162126: Running the command: "mash dist HG03516.1.fa GRCh38.fa.msh"
2023-07-04 14:36:15.674184: Successfully ran: "mash dist HG01109.2.fa GRCh38.fa.msh" in 119.8403 seconds and 206.4 Mi memory
2023-07-04 14:36:18.208127: Successfully ran: "mash dist HG01258.2.fa GRCh38.fa.msh" in 119.6917 seconds and 327.1 Mi memory
2023-07-04 14:36:18.415762: Successfully ran: "mash dist HG02572.2.fa GRCh38.fa.msh" in 118.8465 seconds and 247.8 Mi memory
2023-07-04 14:36:19.819872: Successfully ran: "mash dist HG01928.2.fa GRCh38.fa.msh" in 119.7101 seconds and 310.9 Mi memory
2023-07-04 14:36:20.065041: Successfully ran: "mash dist HG01358.2.fa GRCh38.fa.msh" in 119.2893 seconds and 284.4 Mi memory
2023-07-04 14:36:24.851679: Successfully ran: "mash dist HG03098.2.fa GRCh38.fa.msh" in 120.2616 seconds and 276.8 Mi memory
mash distance of HG03486.2 (size = 3034915351) to reference GRCh38 = 0.000906124 sample distance = 0.000956583
2023-07-04 14:36:34.960451: Successfully ran: "mash dist NA20129.2.fa GRCh38.fa.msh" in 118.207 seconds and 200.8 Mi memory
2023-07-04 14:36:35.694571: Successfully ran: "mash dist HG01361.2.fa GRCh38.fa.msh" in 118.4682 seconds and 281.7 Mi memory
2023-07-04 14:36:36.859680: Successfully ran: "mash dist HG02257.2.fa GRCh38.fa.msh" in 118.2683 seconds and 254.1 Mi memory
2023-07-04 14:36:39.356094: Successfully ran: "mash dist HG02148.2.fa GRCh38.fa.msh" in 118.5927 seconds and 231.3 Mi memory
mash distance of HG01109.2 (size = 3035677523) to reference GRCh38 = 0.000931334 sample distance = 0.000680979
2023-07-04 14:37:20.176859: Successfully ran: "mash dist HG03492.1.fa GRCh38.fa.msh" in 127.44 seconds and 132.2 Mi memory
2023-07-04 14:37:20.429478: Successfully ran: "mash dist HG00621.1.fa GRCh38.fa.msh" in 126.7126 seconds and 221.1 Mi memory
mash distance of HG02572.2 (size = 3055382050) to reference GRCh38 = 0.00105797 sample distance = 0.000805673
mash distance of HG01258.2 (size = 3032420282) to reference GRCh38 = 0.000730741 sample distance = 0.000680979
2023-07-04 14:37:22.343719: Successfully ran: "mash dist HG01106.1.fa GRCh38.fa.msh" in 127.3391 seconds and 277.9 Mi memory
mash distance of HG01928.2 (size = 3025961049) to reference GRCh38 = 0.000680979 sample distance = 0.000680979
mash distance of HG01358.2 (size = 3029587694) to reference GRCh38 = 0.000656154 sample distance = 0.000557238
2023-07-04 14:37:24.093008: Successfully ran: "mash dist HG03579.1.fa GRCh38.fa.msh" in 128.0203 seconds and 204.4 Mi memory
2023-07-04 14:37:26.944893: Successfully ran: "mash dist HG02717.1.fa GRCh38.fa.msh" in 128.2254 seconds and 234.9 Mi memory
2023-07-04 14:37:27.878221: Successfully ran: "mash dist HG02055.1.fa GRCh38.fa.msh" in 129.4486 seconds and 257.4 Mi memory
2023-07-04 14:37:28.741295: Successfully ran: "mash dist HG01952.1.fa GRCh38.fa.msh" in 127.0619 seconds and 275.4 Mi memory
mash distance of HG03098.2 (size = 3059522785) to reference GRCh38 = 0.000981871 sample distance = 0.000880953
2023-07-04 14:37:35.945247: Successfully ran: "mash dist HG02486.1.fa GRCh38.fa.msh" in 128.1176 seconds and 308.8 Mi memory
2023-07-04 14:37:35.955905: Successfully ran: "mash dist HG00673.1.fa GRCh38.fa.msh" in 128.8208 seconds and 176.9 Mi memory
2023-07-04 14:37:36.351137: Successfully ran: "mash dist HG02145.1.fa GRCh38.fa.msh" in 128.202 seconds and 142.2 Mi memory
2023-07-04 14:37:37.469335: Successfully ran: "mash dist HG02818.1.fa GRCh38.fa.msh" in 131.3139 seconds and 148.0 Mi memory
mash distance of NA20129.2 (size = 3045049146) to reference GRCh38 = 0.000931334 sample distance = 0.00103256
mash distance of HG01361.2 (size = 3025313608) to reference GRCh38 = 0.000631368 sample distance = 0.00058191
mash distance of HG02257.2 (size = 3031071346) to reference GRCh38 = 0.000956583 sample distance = 0.000830728
2023-07-04 14:37:40.497913: Successfully ran: "mash dist NA21309.1.fa GRCh38.fa.msh" in 132.3502 seconds and 133.6 Mi memory
2023-07-04 14:37:41.375624: Successfully ran: "mash dist HG02559.1.fa GRCh38.fa.msh" in 132.5331 seconds and 243.4 Mi memory
2023-07-04 14:37:41.538245: Successfully ran: "mash dist HG02630.1.fa GRCh38.fa.msh" in 133.4576 seconds and 167.7 Mi memory
2023-07-04 14:37:41.553260: Successfully ran: "mash dist HG02723.1.fa GRCh38.fa.msh" in 133.1632 seconds and 171.9 Mi memory
mash distance of HG02148.2 (size = 3036136215) to reference GRCh38 = 0.00075568 sample distance = 0.000830728
2023-07-04 14:37:42.088262: Successfully ran: "mash dist HG00741.1.fa GRCh38.fa.msh" in 132.8692 seconds and 304.3 Mi memory
2023-07-04 14:37:42.449902: Successfully ran: "mash dist HG01175.1.fa GRCh38.fa.msh" in 132.29 seconds and 263.5 Mi memory
2023-07-04 14:37:42.617551: Successfully ran: "mash dist HG00733.1.fa GRCh38.fa.msh" in 132.5643 seconds and 243.1 Mi memory
2023-07-04 14:37:42.648602: Successfully ran: "mash dist HG02109.1.fa GRCh38.fa.msh" in 132.5773 seconds and 152.3 Mi memory
2023-07-04 14:37:43.816371: Successfully ran: "mash dist HG01123.1.fa GRCh38.fa.msh" in 131.7848 seconds and 263.6 Mi memory
2023-07-04 14:37:45.496298: Successfully ran: "mash dist HG00438.1.fa GRCh38.fa.msh" in 132.016 seconds and 278.6 Mi memory
2023-07-04 14:37:45.714673: Successfully ran: "mash dist HG02080.2.fa GRCh38.fa.msh" in 132.6873 seconds and 190.3 Mi memory
2023-07-04 14:37:46.064360: Successfully ran: "mash dist HG03540.1.fa GRCh38.fa.msh" in 133.5614 seconds and 194.6 Mi memory
2023-07-04 14:37:46.077454: Successfully ran: "mash dist HG02886.1.fa GRCh38.fa.msh" in 133.2599 seconds and 197.5 Mi memory
2023-07-04 14:37:47.302495: Successfully ran: "mash dist HG00735.1.fa GRCh38.fa.msh" in 131.8678 seconds and 307.8 Mi memory
2023-07-04 14:37:48.058250: Successfully ran: "mash dist HG01978.1.fa GRCh38.fa.msh" in 133.0496 seconds and 265.2 Mi memory
2023-07-04 14:37:48.211922: Successfully ran: "mash dist NA18906.1.fa GRCh38.fa.msh" in 132.5093 seconds and 237.5 Mi memory
2023-07-04 14:37:48.280212: Successfully ran: "mash dist HG01891.1.fa GRCh38.fa.msh" in 133.0376 seconds and 231.6 Mi memory
2023-07-04 14:37:48.354593: Successfully ran: "mash dist HG01071.1.fa GRCh38.fa.msh" in 132.9877 seconds and 313.6 Mi memory
2023-07-04 14:37:48.493458: Successfully ran: "mash dist HG02622.1.fa GRCh38.fa.msh" in 132.7172 seconds and 225.3 Mi memory
2023-07-04 14:37:49.540281: Successfully ran: "mash dist HG03453.1.fa GRCh38.fa.msh" in 131.751 seconds and 155.2 Mi memory
2023-07-04 14:37:51.040699: Successfully ran: "mash dist HG03516.1.fa GRCh38.fa.msh" in 132.8774 seconds and 316.0 Mi memory
mash distance of HG03492.1 (size = 2923665925) to reference GRCh38 = 0.00191916 sample distance = 0.00075568
2023-07-04 14:38:09.338627: Running the command: "mash dist HG03492.2.fa GRCh38.fa.msh"
mash distance of HG00621.1 (size = 2905948993) to reference GRCh38 = 0.00175922 sample distance = 0.000680979
2023-07-04 14:38:09.946804: Running the command: "mash dist HG00621.2.fa GRCh38.fa.msh"
mash distance of HG01106.1 (size = 2927007346) to reference GRCh38 = 0.00178577 sample distance = 0.000557238
2023-07-04 14:38:11.053292: Running the command: "mash dist HG01106.2.fa GRCh38.fa.msh"
mash distance of HG03579.1 (size = 2947164001) to reference GRCh38 = 0.00199971 sample distance = 0.000730741
2023-07-04 14:38:12.189741: Running the command: "mash dist HG03579.2.fa GRCh38.fa.msh"
mash distance of HG02717.1 (size = 2946102667) to reference GRCh38 = 0.00218918 sample distance = 0.000931334
2023-07-04 14:38:13.343416: Running the command: "mash dist HG02717.2.fa GRCh38.fa.msh"
mash distance of HG02055.1 (size = 2950246117) to reference GRCh38 = 0.00194597 sample distance = 0.0010072
2023-07-04 14:38:13.826602: Running the command: "mash dist HG02055.2.fa GRCh38.fa.msh"
mash distance of HG01952.1 (size = 2913263982) to reference GRCh38 = 0.00181236 sample distance = 0.000532603
2023-07-04 14:38:13.951614: Running the command: "mash dist HG01952.2.fa GRCh38.fa.msh"
mash distance of HG02145.1 (size = 2937649060) to reference GRCh38 = 0.0018924 sample distance = 0.00075568
2023-07-04 14:38:17.573128: Running the command: "mash dist HG02145.2.fa GRCh38.fa.msh"
mash distance of HG00673.1 (size = 2925716157) to reference GRCh38 = 0.00194597 sample distance = 0.000805673
2023-07-04 14:38:17.805459: Running the command: "mash dist HG00673.2.fa GRCh38.fa.msh"
mash distance of HG02486.1 (size = 2930935689) to reference GRCh38 = 0.00202665 sample distance = 0.000830728
2023-07-04 14:38:18.122933: Running the command: "mash dist HG02486.2.fa GRCh38.fa.msh"
mash distance of HG02818.1 (size = 3019578985) to reference GRCh38 = 0.000780658 sample distance = 0.0011089
2023-07-04 14:38:19.670720: Running the command: "mash dist HG02818.2.fa GRCh38.fa.msh"
mash distance of NA21309.1 (size = 3029616838) to reference GRCh38 = 0.000956583 sample distance = 0.000981871
2023-07-04 14:38:22.708318: Running the command: "mash dist NA21309.2.fa GRCh38.fa.msh"
mash distance of HG02723.1 (size = 3049492048) to reference GRCh38 = 0.000956583 sample distance = 0.000931334
2023-07-04 14:38:23.256985: Running the command: "mash dist HG02723.2.fa GRCh38.fa.msh"
mash distance of HG02559.1 (size = 3024156283) to reference GRCh38 = 0.000830728 sample distance = 0.000931334
2023-07-04 14:38:23.443111: Running the command: "mash dist HG02559.2.fa GRCh38.fa.msh"
mash distance of HG02630.1 (size = 3053354263) to reference GRCh38 = 0.00103256 sample distance = 0.000956583
2023-07-04 14:38:23.703010: Running the command: "mash dist HG02630.2.fa GRCh38.fa.msh"
mash distance of HG02109.1 (size = 3037645976) to reference GRCh38 = 0.00115999 sample distance = 0.0010072
2023-07-04 14:38:23.704590: Running the command: "mash dist HG02109.2.fa GRCh38.fa.msh"
mash distance of HG00741.1 (size = 3029878036) to reference GRCh38 = 0.000855821 sample distance = 0.00075568
2023-07-04 14:38:23.783550: Running the command: "mash dist HG00741.2.fa GRCh38.fa.msh"
mash distance of HG01175.1 (size = 3030026811) to reference GRCh38 = 0.000880953 sample distance = 0.000880953
2023-07-04 14:38:23.870599: Running the command: "mash dist HG01175.2.fa GRCh38.fa.msh"
mash distance of HG00733.1 (size = 3041978016) to reference GRCh38 = 0.000780658 sample distance = 0.000805673
2023-07-04 14:38:24.016816: Running the command: "mash dist HG00733.2.fa GRCh38.fa.msh"
mash distance of HG01123.1 (size = 3014197469) to reference GRCh38 = 0.00075568 sample distance = 0.000830728
2023-07-04 14:38:24.471517: Running the command: "mash dist HG01123.2.fa GRCh38.fa.msh"
mash distance of HG02080.2 (size = 3033198064) to reference GRCh38 = 0.000705841 sample distance = 0.000730741
2023-07-04 14:38:25.636160: Running the command: "mash dist HG02080.1.fa GRCh38.fa.msh"
mash distance of HG00438.1 (size = 3025118465) to reference GRCh38 = 0.000805673 sample distance = 0.000906124
2023-07-04 14:38:25.824444: Running the command: "mash dist HG00438.2.fa GRCh38.fa.msh"
mash distance of HG02886.1 (size = 3047149239) to reference GRCh38 = 0.00105797 sample distance = 0.000906124
2023-07-04 14:38:26.122415: Running the command: "mash dist HG02886.2.fa GRCh38.fa.msh"
mash distance of HG03540.1 (size = 3065276644) to reference GRCh38 = 0.000880953 sample distance = 0.00103256
2023-07-04 14:38:26.377341: Running the command: "mash dist HG03540.2.fa GRCh38.fa.msh"
mash distance of HG00735.1 (size = 3033541617) to reference GRCh38 = 0.00060662 sample distance = 0.000830728
2023-07-04 14:38:27.040985: Running the command: "mash dist HG00735.2.fa GRCh38.fa.msh"
mash distance of NA18906.1 (size = 3046330261) to reference GRCh38 = 0.000880953 sample distance = 0.0010072
2023-07-04 14:38:27.396053: Running the command: "mash dist NA18906.2.fa GRCh38.fa.msh"
mash distance of HG01891.1 (size = 3043232268) to reference GRCh38 = 0.000981871 sample distance = 0.000830728
2023-07-04 14:38:27.531119: Running the command: "mash dist HG01891.2.fa GRCh38.fa.msh"
mash distance of HG01978.1 (size = 3055071491) to reference GRCh38 = 0.000780658 sample distance = 0.00060662
2023-07-04 14:38:27.718745: Running the command: "mash dist HG01978.2.fa GRCh38.fa.msh"
mash distance of HG01071.1 (size = 3057222025) to reference GRCh38 = 0.000705841 sample distance = 0.000780658
2023-07-04 14:38:27.872477: Running the command: "mash dist HG01071.2.fa GRCh38.fa.msh"
mash distance of HG02622.1 (size = 3043426064) to reference GRCh38 = 0.000956583 sample distance = 0.000931334
2023-07-04 14:38:28.170683: Running the command: "mash dist HG02622.2.fa GRCh38.fa.msh"
mash distance of HG03453.1 (size = 3050441176) to reference GRCh38 = 0.000906124 sample distance = 0.000981871
2023-07-04 14:38:28.275048: Running the command: "mash dist HG03453.2.fa GRCh38.fa.msh"
mash distance of HG03516.1 (size = 3067004974) to reference GRCh38 = 0.000906124 sample distance = 0.0010072
2023-07-04 14:38:29.281521: Running the command: "mash dist HG03516.2.fa GRCh38.fa.msh"
2023-07-04 14:39:42.045645: Successfully ran: "mash dist HG03492.2.fa GRCh38.fa.msh" in 92.706 seconds and 154.9 Mi memory
2023-07-04 14:39:44.519864: Successfully ran: "mash dist HG00621.2.fa GRCh38.fa.msh" in 94.5717 seconds and 297.1 Mi memory
2023-07-04 14:39:45.472207: Successfully ran: "mash dist HG01106.2.fa GRCh38.fa.msh" in 94.4176 seconds and 282.2 Mi memory
2023-07-04 14:39:45.766177: Successfully ran: "mash dist HG02717.2.fa GRCh38.fa.msh" in 92.4216 seconds and 372.4 Mi memory
2023-07-04 14:39:46.778016: Successfully ran: "mash dist HG03579.2.fa GRCh38.fa.msh" in 94.5869 seconds and 192.7 Mi memory
2023-07-04 14:39:47.317836: Successfully ran: "mash dist HG02055.2.fa GRCh38.fa.msh" in 93.4898 seconds and 231.9 Mi memory
2023-07-04 14:39:48.074133: Successfully ran: "mash dist HG01952.2.fa GRCh38.fa.msh" in 94.1211 seconds and 252.1 Mi memory
2023-07-04 14:39:50.101761: Successfully ran: "mash dist HG02145.2.fa GRCh38.fa.msh" in 92.5272 seconds and 171.9 Mi memory
2023-07-04 14:39:51.348564: Successfully ran: "mash dist HG00673.2.fa GRCh38.fa.msh" in 93.5416 seconds and 187.3 Mi memory
2023-07-04 14:39:51.949109: Successfully ran: "mash dist HG02486.2.fa GRCh38.fa.msh" in 93.8246 seconds and 269.4 Mi memory
2023-07-04 14:39:52.763649: Successfully ran: "mash dist HG02818.2.fa GRCh38.fa.msh" in 93.0915 seconds and 155.4 Mi memory
2023-07-04 14:39:54.880646: Successfully ran: "mash dist NA21309.2.fa GRCh38.fa.msh" in 92.1703 seconds and 167.9 Mi memory
2023-07-04 14:39:55.617744: Successfully ran: "mash dist HG01123.2.fa GRCh38.fa.msh" in 91.1451 seconds and 275.7 Mi memory
2023-07-04 14:39:55.895550: Successfully ran: "mash dist HG02630.2.fa GRCh38.fa.msh" in 92.1914 seconds and 190.0 Mi memory
2023-07-04 14:39:56.251844: Successfully ran: "mash dist HG02723.2.fa GRCh38.fa.msh" in 92.9935 seconds and 189.0 Mi memory
2023-07-04 14:39:56.367120: Successfully ran: "mash dist HG01175.2.fa GRCh38.fa.msh" in 92.4951 seconds and 250.3 Mi memory
2023-07-04 14:39:56.539905: Successfully ran: "mash dist HG02109.2.fa GRCh38.fa.msh" in 92.8337 seconds and 172.7 Mi memory
2023-07-04 14:39:56.867343: Successfully ran: "mash dist HG00741.2.fa GRCh38.fa.msh" in 93.0826 seconds and 286.5 Mi memory
2023-07-04 14:39:57.062317: Successfully ran: "mash dist HG00733.2.fa GRCh38.fa.msh" in 93.0441 seconds and 202.6 Mi memory
2023-07-04 14:39:57.230245: Successfully ran: "mash dist HG02559.2.fa GRCh38.fa.msh" in 93.7858 seconds and 303.7 Mi memory
2023-07-04 14:39:57.542015: Successfully ran: "mash dist HG02080.1.fa GRCh38.fa.msh" in 91.9043 seconds and 169.0 Mi memory
2023-07-04 14:39:58.840943: Successfully ran: "mash dist HG00438.2.fa GRCh38.fa.msh" in 93.015 seconds and 262.2 Mi memory
2023-07-04 14:39:59.236794: Successfully ran: "mash dist HG00735.2.fa GRCh38.fa.msh" in 92.1946 seconds and 248.4 Mi memory
2023-07-04 14:39:59.821198: Successfully ran: "mash dist HG02886.2.fa GRCh38.fa.msh" in 93.6978 seconds and 248.1 Mi memory
2023-07-04 14:39:59.968885: Successfully ran: "mash dist HG01891.2.fa GRCh38.fa.msh" in 92.4364 seconds and 305.2 Mi memory
2023-07-04 14:40:00.033244: Successfully ran: "mash dist HG01978.2.fa GRCh38.fa.msh" in 92.313 seconds and 247.6 Mi memory
2023-07-04 14:40:00.597546: Successfully ran: "mash dist HG03540.2.fa GRCh38.fa.msh" in 94.2189 seconds and 209.8 Mi memory
2023-07-04 14:40:01.526759: Successfully ran: "mash dist HG01071.2.fa GRCh38.fa.msh" in 93.6509 seconds and 383.8 Mi memory
2023-07-04 14:40:01.900887: Successfully ran: "mash dist NA18906.2.fa GRCh38.fa.msh" in 94.5029 seconds and 217.1 Mi memory
2023-07-04 14:40:02.717889: Successfully ran: "mash dist HG02622.2.fa GRCh38.fa.msh" in 94.5438 seconds and 280.6 Mi memory
2023-07-04 14:40:03.119136: Successfully ran: "mash dist HG03453.2.fa GRCh38.fa.msh" in 94.8415 seconds and 190.9 Mi memory
2023-07-04 14:40:03.784468: Successfully ran: "mash dist HG03516.2.fa GRCh38.fa.msh" in 94.5001 seconds and 278.9 Mi memory
mash distance of HG03492.2 (size = 3023922307) to reference GRCh38 = 0.000830728 sample distance = 0.00075568
mash distance of HG00621.2 (size = 3023026071) to reference GRCh38 = 0.000780658 sample distance = 0.000680979
mash distance of HG01106.2 (size = 3035845582) to reference GRCh38 = 0.000656154 sample distance = 0.000557238
mash distance of HG02717.2 (size = 3038320685) to reference GRCh38 = 0.000855821 sample distance = 0.000931334
mash distance of HG03579.2 (size = 3035143227) to reference GRCh38 = 0.000830728 sample distance = 0.000730741
mash distance of HG02055.2 (size = 3019590183) to reference GRCh38 = 0.00108342 sample distance = 0.0010072
mash distance of HG01952.2 (size = 3020563005) to reference GRCh38 = 0.00060662 sample distance = 0.000532603
mash distance of HG02145.2 (size = 3030589160) to reference GRCh38 = 0.000906124 sample distance = 0.00075568
mash distance of HG00673.2 (size = 3053585067) to reference GRCh38 = 0.00075568 sample distance = 0.000805673
mash distance of HG02486.2 (size = 3030662429) to reference GRCh38 = 0.000880953 sample distance = 0.000830728
mash distance of HG02818.2 (size = 3037441458) to reference GRCh38 = 0.0011089 sample distance = 0.0011089
mash distance of NA21309.2 (size = 3036587447) to reference GRCh38 = 0.000931334 sample distance = 0.000981871
mash distance of HG01123.2 (size = 3012822948) to reference GRCh38 = 0.000830728 sample distance = 0.000830728
mash distance of HG02630.2 (size = 3041877443) to reference GRCh38 = 0.000830728 sample distance = 0.000956583
mash distance of HG02109.2 (size = 3026115826) to reference GRCh38 = 0.000981871 sample distance = 0.0010072
mash distance of HG02723.2 (size = 3027203092) to reference GRCh38 = 0.000805673 sample distance = 0.000931334
mash distance of HG01175.2 (size = 3030735652) to reference GRCh38 = 0.000880953 sample distance = 0.000880953
mash distance of HG02080.1 (size = 3024505444) to reference GRCh38 = 0.000705841 sample distance = 0.000730741
mash distance of HG00741.2 (size = 3036701854) to reference GRCh38 = 0.000830728 sample distance = 0.00075568
mash distance of HG00733.2 (size = 3026533161) to reference GRCh38 = 0.00075568 sample distance = 0.000805673
mash distance of HG02559.2 (size = 3040531780) to reference GRCh38 = 0.000931334 sample distance = 0.000931334
mash distance of HG00438.2 (size = 3035735720) to reference GRCh38 = 0.000805673 sample distance = 0.000906124
mash distance of HG00735.2 (size = 3037795105) to reference GRCh38 = 0.000906124 sample distance = 0.000830728
mash distance of HG02886.2 (size = 3049134634) to reference GRCh38 = 0.000880953 sample distance = 0.000906124
mash distance of HG01891.2 (size = 3022952778) to reference GRCh38 = 0.000906124 sample distance = 0.000830728
mash distance of HG03540.2 (size = 3048418776) to reference GRCh38 = 0.000981871 sample distance = 0.00103256
mash distance of HG01978.2 (size = 3051869401) to reference GRCh38 = 0.000656154 sample distance = 0.00060662
mash distance of HG01071.2 (size = 3012710110) to reference GRCh38 = 0.000981871 sample distance = 0.000780658
mash distance of NA18906.2 (size = 3055692855) to reference GRCh38 = 0.00103256 sample distance = 0.0010072
mash distance of HG03453.2 (size = 3047998942) to reference GRCh38 = 0.000981871 sample distance = 0.000981871
mash distance of HG02622.2 (size = 3046105980) to reference GRCh38 = 0.000855821 sample distance = 0.000931334
mash distance of HG03516.2 (size = 3033479640) to reference GRCh38 = 0.00103256 sample distance = 0.0010072
Issued job 'mash_distance_order' kind-mash_distance_order/instance-bg63zwzm v1 with job batch system ID: 138 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'minigraph_construct' kind-minigraph_construct/instance-8g4kaqe9 v1 with job batch system ID: 139 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'minigraph_construct' kind-minigraph_construct/instance-_e119k63 v1 with job batch system ID: 140 and disk: 510.9 Gi, memory: 238.4 Gi, cores: 64, accelerators: [], preemptible: False
2023-07-04 14:55:59.589651: Running the command: "bash -c set -eo pipefail && minigraph -c -xggs -t 64 GRCh38.fa CHM13.fa HG01952.2.fa HG01952.1.fa HG01106.2.fa HG01358.2.fa HG01106.1.fa HG01358.1.fa HG01361.2.fa HG01361.1.fa HG01978.2.fa HG01978.1.fa HG01928.2.fa HG01258.2.fa HG00621.2.fa HG01109.2.fa HG01109.1.fa HG01258.1.fa HG00621.1.fa HG01928.1.fa HG02080.2.fa HG02080.1.fa HG03579.2.fa HG03579.1.fa HG00741.2.fa HG03492.2.fa HG00741.1.fa HG02145.2.fa HG02145.1.fa HG03492.1.fa HG01071.1.fa HG01071.2.fa HG00673.2.fa HG00733.2.fa HG00733.1.fa HG02572.2.fa HG00673.1.fa HG02572.1.fa HG00735.1.fa HG02257.1.fa HG02148.2.fa HG01123.1.fa HG02148.1.fa HG01123.2.fa HG02486.2.fa HG00735.2.fa HG01243.2.fa HG01891.2.fa HG02257.2.fa HG01891.1.fa HG01243.1.fa HG02486.1.fa HG01175.2.fa HG01175.1.fa HG03098.2.fa HG03098.1.fa HG00438.2.fa HG00438.1.fa HG02886.2.fa HG02886.1.fa HG02723.2.fa HG02559.1.fa HG02622.2.fa HG02717.2.fa HG02559.2.fa HG02723.1.fa HG02622.1.fa HG02717.1.fa HG02630.2.fa HG03486.2.fa HG02630.1.fa HG03486.1.fa HG03453.1.fa NA21309.2.fa NA21309.1.fa HG03453.2.fa NA18906.1.fa HG03516.1.fa HG02109.2.fa NA18906.2.fa HG03516.2.fa HG02055.2.fa HG02109.1.fa HG02055.1.fa HG03540.1.fa NA20129.2.fa HG03540.2.fa NA20129.1.fa HG02818.1.fa HG02818.2.fa | bgzip --threads 64"
[minigraph]: [M::main::10.702*0.73] loaded the graph from "GRCh38.fa"
[minigraph]: [M::mg_index::77.969*2.29] indexed the graph
[minigraph]: [M::mg_opt_update::83.116*2.21] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::89.299*2.13] loaded file "CHM13.fa"
1 jobs are running, 0 jobs are issued and waiting to run
[minigraph]: [M::ggen_map::1150.396*5.04] mapped 25 sequence(s) to the graph
[minigraph]: [M::mg_ggsimple_cigar::1156.411*5.02] inserted 17025 events, including 54 inversions
[minigraph]: [M::mg_index::1216.324*4.86] indexed the graph
[minigraph]: [M::mg_opt_update::1220.964*4.85] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::1229.564*4.82] loaded file "HG01952.2.fa"
[minigraph]: [M::ggen_map::1571.952*6.77] mapped 307 sequence(s) to the graph
[minigraph]: [M::mg_ggsimple_cigar::1576.275*6.76] inserted 9777 events, including 25 inversions
[minigraph]: [M::mg_index::1633.862*6.58] indexed the graph
[minigraph]: [M::mg_opt_update::1637.990*6.57] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::1645.450*6.54] loaded file "HG01952.1.fa"
[minigraph]: [M::ggen_map::2112.641*7.49] mapped 378 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s6358 and <s6357 derived from the 13-th query at 10961874-10961874
[minigraph]: [W::gfa_ins_filter] impossible insert between <s50022 and >s28479 derived from the 54-th query at 53173143-53173143
[minigraph]: [M::mg_ggsimple_cigar::2115.679*7.48] inserted 6114 events, including 8 inversions
[minigraph]: [M::mg_index::2172.749*7.33] indexed the graph
[minigraph]: [M::mg_opt_update::2177.333*7.32] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::2185.156*7.29] loaded file "HG01106.2.fa"
[minigraph]: [M::ggen_map::2837.905*7.28] mapped 272 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] impossible insert between <s34677 and >s34675 derived from the 20-th query at 17602766-17602766
[minigraph]: [W::gfa_ins_filter] multi-link between <s34482 and <s34481 derived from the 20-th query at 30819016-30819016
[minigraph]: [W::gfa_ins_filter] impossible insert between <s33985 and >s33983 derived from the 20-th query at 78771393-78771393
[minigraph]: [W::gfa_ins_filter] impossible insert between >s33985 and <s33983 derived from the 20-th query at 78771779-78771779
[minigraph]: [W::gfa_ins_filter] impossible insert between <s58658 and >s33977 derived from the 20-th query at 79147876-79147876
[minigraph]: [W::gfa_ins_filter] impossible insert between >s58658 and <s33977 derived from the 20-th query at 79160474-79160474
[minigraph]: [M::mg_ggsimple_cigar::2840.808*7.28] inserted 5853 events, including 8 inversions
[minigraph]: [M::mg_index::2897.858*7.17] indexed the graph
[minigraph]: [M::mg_opt_update::2902.261*7.16] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::2909.996*7.14] loaded file "HG01358.2.fa"
[minigraph]: [M::ggen_map::3255.383*8.08] mapped 334 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s10957 and >s10959 derived from the 12-th query at 6122065-6122065
[minigraph]: [W::gfa_ins_filter] impossible insert between >s17421 and <s17420 derived from the 81-th query at 13089935-13089935
[minigraph]: [W::gfa_ins_filter] multi-link between >s2031 and >s2033 derived from the 85-th query at 9511757-9511757
[minigraph]: [W::gfa_ins_filter] impossible insert between >s38995 and <s66738 derived from the 123-th query at 1975015-1975015
[minigraph]: [W::gfa_ins_filter] impossible insert between <s38995 and >s66738 derived from the 123-th query at 1987595-1987595
[minigraph]: [M::mg_ggsimple_cigar::3258.172*8.07] inserted 4427 events, including 6 inversions
[minigraph]: [M::mg_index::3315.167*7.96] indexed the graph
[minigraph]: [M::mg_opt_update::3319.614*7.96] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::3327.070*7.94] loaded file "HG01106.1.fa"
[minigraph]: [M::ggen_map::3842.043*8.40] mapped 284 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] impossible insert between >s42617 and <s72709 derived from the 4-th query at 4702334-4702334
[minigraph]: [W::gfa_ins_filter] impossible insert between <s42617 and >s72709 derived from the 4-th query at 4714931-4714931
[minigraph]: [W::gfa_ins_filter] impossible insert between <s24738 and >s24736 derived from the 21-th query at 15179071-15179071
[minigraph]: [W::gfa_ins_filter] impossible insert between >s24738 and <s24736 derived from the 21-th query at 15179555-15179555
[minigraph]: [W::gfa_ins_filter] multi-link between <s23520 and <s23519 derived from the 54-th query at 3007955-3007955
[minigraph]: [M::mg_ggsimple_cigar::3844.770*8.39] inserted 4065 events, including 7 inversions
[minigraph]: [M::mg_index::3901.723*8.29] indexed the graph
[minigraph]: [M::mg_opt_update::3906.378*8.29] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::3913.891*8.27] loaded file "HG01358.1.fa"
1 jobs are running, 0 jobs are issued and waiting to run
[minigraph]: [M::ggen_map::4234.169*9.27] mapped 441 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] impossible insert between >s63599 and <s63598 derived from the 63-th query at 937700-937700
[minigraph]: [W::gfa_ins_filter] multi-link between >s54489 and >s54490 derived from the 116-th query at 55572-55572
[minigraph]: [M::mg_ggsimple_cigar::4237.392*9.27] inserted 3223 events, including 5 inversions
[minigraph]: [M::mg_index::4294.813*9.17] indexed the graph
[minigraph]: [M::mg_opt_update::4299.311*9.16] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::4307.085*9.14] loaded file "HG01361.2.fa"
[minigraph]: [M::ggen_map::4703.305*9.75] mapped 295 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s18892 and >s18893 derived from the 15-th query at 40024651-40024651
[minigraph]: [W::gfa_ins_filter] multi-link between >s60373 and >s60374 derived from the 51-th query at 6564446-6564446
[minigraph]: [W::gfa_ins_filter] multi-link between <s57736 and <s57735 derived from the 158-th query at 900913-900913
[minigraph]: [W::gfa_ins_filter] multi-link between <s64940 and <s64939 derived from the 183-th query at 451750-451750
[minigraph]: [M::mg_ggsimple_cigar::4706.146*9.74] inserted 3202 events, including 7 inversions
[minigraph]: [M::mg_index::4763.209*9.65] indexed the graph
[minigraph]: [M::mg_opt_update::4767.665*9.64] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::4775.448*9.62] loaded file "HG01361.1.fa"
[minigraph]: [M::ggen_map::5497.207*9.29] mapped 288 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s2627 and >s2629 derived from the 11-th query at 61063550-61063550
[minigraph]: [W::gfa_ins_filter] multi-link between >s12934 and >s12936 derived from the 19-th query at 84983657-84983657
[minigraph]: [W::gfa_ins_filter] impossible insert between <s86604 and >s51235 derived from the 25-th query at 53872452-53872452
[minigraph]: [W::gfa_ins_filter] impossible insert between >s86604 and <s51235 derived from the 25-th query at 53885045-53885045
[minigraph]: [W::gfa_ins_filter] multi-link between >s57210 and >s57212 derived from the 50-th query at 25800625-25800625
[minigraph]: [W::gfa_ins_filter] multi-link between >s87583 and >s54809 derived from the 51-th query at 45291543-45291543
[minigraph]: [W::gfa_ins_filter] multi-link between >s49599 and >s49600 derived from the 63-th query at 12254322-12254322
[minigraph]: [W::gfa_ins_filter] multi-link between <s58820 and <s58818 derived from the 82-th query at 11999691-11999691
[minigraph]: [M::mg_ggsimple_cigar::5499.832*9.29] inserted 2594 events, including 4 inversions
[minigraph]: [M::mg_index::5557.001*9.21] indexed the graph
[minigraph]: [M::mg_opt_update::5561.673*9.21] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::5569.538*9.19] loaded file "HG01978.2.fa"
[minigraph]: [M::ggen_map::6263.687*9.20] mapped 247 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s2711 and >s2713 derived from the 6-th query at 61138816-61138816
[minigraph]: [W::gfa_ins_filter] multi-link between <s43051 and <s43050 derived from the 26-th query at 42263816-42263816
[minigraph]: [W::gfa_ins_filter] impossible insert between >s53197 and <s89898 derived from the 28-th query at 40889-40889
[minigraph]: [W::gfa_ins_filter] impossible insert between <s53197 and >s89898 derived from the 28-th query at 53469-53469
[minigraph]: [W::gfa_ins_filter] multi-link between <s55174 and <s55172 derived from the 109-th query at 10423067-10423067
[minigraph]: [M::mg_ggsimple_cigar::6266.175*9.20] inserted 2213 events, including 1 inversions
[minigraph]: [M::mg_index::6323.122*9.13] indexed the graph
[minigraph]: [M::mg_opt_update::6327.801*9.13] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::6335.708*9.12] loaded file "HG01978.1.fa"
[minigraph]: [M::ggen_map::6793.085*9.43] mapped 286 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s3378 and <s3376 derived from the 22-th query at 1737340-1737340
[minigraph]: [W::gfa_ins_filter] impossible insert between >s24585 and <s24589 derived from the 34-th query at 26682402-26682402
[minigraph]: [W::gfa_ins_filter] impossible insert between <s24585 and >s24589 derived from the 34-th query at 26700711-26700711
[minigraph]: [W::gfa_ins_filter] multi-link between <s30090 and >s101427 derived from the 50-th query at 2281521-2281521
[minigraph]: [W::gfa_ins_filter] impossible insert between >s54854 and <s92640 derived from the 86-th query at 6151876-6151876
[minigraph]: [W::gfa_ins_filter] impossible insert between <s54854 and >s92640 derived from the 86-th query at 6164456-6164456
[minigraph]: [W::gfa_ins_filter] multi-link between <s33186 and <s33183 derived from the 108-th query at 695996-695996
[minigraph]: [W::gfa_ins_filter] multi-link between <s72754 and <s72753 derived from the 122-th query at 63161-63161
[minigraph]: [M::mg_ggsimple_cigar::6795.382*9.43] inserted 1864 events, including 5 inversions
[minigraph]: [M::mg_index::6852.391*9.36] indexed the graph
[minigraph]: [M::mg_opt_update::6856.849*9.36] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::6864.627*9.35] loaded file "HG01928.2.fa"
[minigraph]: [M::ggen_map::7337.357*9.51] mapped 244 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] impossible insert between <s94859 and >s56236 derived from the 15-th query at 53606997-53606997
[minigraph]: [W::gfa_ins_filter] impossible insert between >s94859 and <s56236 derived from the 15-th query at 53619594-53619594
[minigraph]: [W::gfa_ins_filter] multi-link between <s69348 and <s69347 derived from the 23-th query at 44180818-44180818
[minigraph]: [W::gfa_ins_filter] multi-link between >s26974 and >s26977 derived from the 26-th query at 51192579-51192579
[minigraph]: [W::gfa_ins_filter] multi-link between <s20870 and <s20868 derived from the 39-th query at 11764370-11764370
[minigraph]: [M::mg_ggsimple_cigar::7339.660*9.50] inserted 1643 events, including 2 inversions
[minigraph]: [M::mg_index::7397.300*9.44] indexed the graph
[minigraph]: [M::mg_opt_update::7401.846*9.44] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::7409.687*9.43] loaded file "HG01258.2.fa"
1 jobs are running, 0 jobs are issued and waiting to run
[minigraph]: [M::ggen_map::7766.260*9.74] mapped 346 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s44627 and <s44626 derived from the 6-th query at 7239201-7239201
[minigraph]: [W::gfa_ins_filter] multi-link between <s88321 and <s88318 derived from the 10-th query at 35583922-35583922
[minigraph]: [W::gfa_ins_filter] multi-link between >s79925 and >s79926 derived from the 70-th query at 98953-98953
[minigraph]: [W::gfa_ins_filter] multi-link between <s59662 and <s59661 derived from the 129-th query at 1345322-1345322
[minigraph]: [M::mg_ggsimple_cigar::7768.584*9.74] inserted 1961 events, including 1 inversions
[minigraph]: [M::mg_index::7825.881*9.68] indexed the graph
[minigraph]: [M::mg_opt_update::7830.496*9.67] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::7838.205*9.66] loaded file "HG00621.2.fa"
[minigraph]: [M::ggen_map::8524.436*9.65] mapped 253 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] impossible insert between <s130465 and >s130466 derived from the 7-th query at 1325140-1325140
[minigraph]: [W::gfa_ins_filter] multi-link between <s23860 and <s23859 derived from the 21-th query at 73672941-73672941
[minigraph]: [W::gfa_ins_filter] multi-link between >s2951 and >s2954 derived from the 30-th query at 26262148-26262148
[minigraph]: [W::gfa_ins_filter] multi-link between >s32668 and >s32669 derived from the 54-th query at 93923756-93923756
[minigraph]: [W::gfa_ins_filter] multi-link between >s100733 and >s100734 derived from the 61-th query at 21530550-21530550
[minigraph]: [M::mg_ggsimple_cigar::8526.699*9.65] inserted 2183 events, including 2 inversions
[minigraph]: [M::mg_index::8584.014*9.59] indexed the graph
[minigraph]: [M::mg_opt_update::8588.387*9.59] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::8596.132*9.58] loaded file "HG01109.2.fa"
[minigraph]: [M::ggen_map::9238.327*9.58] mapped 399 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s101344 and >s101346 derived from the 10-th query at 7201196-7201196
[minigraph]: [W::gfa_ins_filter] multi-link between >s66546 and >s66550 derived from the 11-th query at 18266354-18266354
[minigraph]: [W::gfa_ins_filter] multi-link between >s1291 and >s1292 derived from the 35-th query at 5769780-5769780
[minigraph]: [W::gfa_ins_filter] multi-link between >s28915 and >s28918 derived from the 48-th query at 15453024-15453024
[minigraph]: [W::gfa_ins_filter] impossible insert between <s35097 and >s35095 derived from the 51-th query at 13554217-13554217
[minigraph]: [W::gfa_ins_filter] impossible insert between >s35097 and <s35095 derived from the 51-th query at 13554701-13554701
[minigraph]: [W::gfa_ins_filter] impossible insert between >s60440 and <s101686 derived from the 63-th query at 3136795-3136795
[minigraph]: [W::gfa_ins_filter] impossible insert between <s60440 and >s101686 derived from the 63-th query at 3149386-3149386
[minigraph]: [W::gfa_ins_filter] multi-link between >s3036 and >s3039 derived from the 75-th query at 7091598-7091598
[minigraph]: [W::gfa_ins_filter] multi-link between <s33225 and <s33223 derived from the 114-th query at 3334849-3334849
[minigraph]: [M::mg_ggsimple_cigar::9241.437*9.58] inserted 4167 events, including 6 inversions
[minigraph]: [M::mg_index::9298.836*9.53] indexed the graph
[minigraph]: [M::mg_opt_update::9303.451*9.52] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::9310.935*9.52] loaded file "HG01109.1.fa"
[minigraph]: [M::ggen_map::9806.570*9.70] mapped 473 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s51980 and <s51979 derived from the 8-th query at 25109686-25109686
[minigraph]: [W::gfa_ins_filter] multi-link between >s35021 and >s35026 derived from the 162-th query at 11393498-11393498
[minigraph]: [W::gfa_ins_filter] multi-link between >s75903 and >s75904 derived from the 340-th query at 40688-40688
[minigraph]: [M::mg_ggsimple_cigar::9809.207*9.69] inserted 2365 events, including 4 inversions
[minigraph]: [M::mg_index::9866.354*9.65] indexed the graph
[minigraph]: [M::mg_opt_update::9870.951*9.64] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::9878.447*9.64] loaded file "HG01258.1.fa"
[minigraph]: [M::ggen_map::10530.555*9.64] mapped 324 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s24249 and <s24246 derived from the 0-th query at 52657217-52657217
[minigraph]: [W::gfa_ins_filter] multi-link between >s72322 and >s72326 derived from the 2-th query at 18064836-18064836
[minigraph]: [W::gfa_ins_filter] multi-link between <s3298 and <s3295 derived from the 3-th query at 47759813-47759813
[minigraph]: [W::gfa_ins_filter] multi-link between <s65636 and <s65635 derived from the 10-th query at 78992248-78992248
[minigraph]: [W::gfa_ins_filter] multi-link between >s112918 and >s112919 derived from the 21-th query at 51849441-51849441
[minigraph]: [W::gfa_ins_filter] impossible insert between <s29446 and >s29442 derived from the 65-th query at 33364653-33364653
[minigraph]: [W::gfa_ins_filter] impossible insert between >s29446 and <s29442 derived from the 65-th query at 33383051-33383051
[minigraph]: [W::gfa_ins_filter] multi-link between <s100758 and <s100755 derived from the 65-th query at 36504356-36504356
[minigraph]: [M::mg_ggsimple_cigar::10532.982*9.63] inserted 1521 events, including 2 inversions
[minigraph]: [M::mg_index::10590.108*9.59] indexed the graph
[minigraph]: [M::mg_opt_update::10594.778*9.59] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::10602.248*9.58] loaded file "HG00621.1.fa"
1 jobs are running, 0 jobs are issued and waiting to run
[minigraph]: [M::ggen_map::11261.501*9.59] mapped 287 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s102489 and <s102486 derived from the 19-th query at 32780827-32780827
[minigraph]: [W::gfa_ins_filter] multi-link between <s85849 and <s85848 derived from the 74-th query at 1788674-1788674
[minigraph]: [M::mg_ggsimple_cigar::11264.413*9.59] inserted 1745 events, including 3 inversions
[minigraph]: [M::mg_index::11321.887*9.55] indexed the graph
[minigraph]: [M::mg_opt_update::11326.601*9.55] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::11334.073*9.54] loaded file "HG01928.1.fa"
[minigraph]: [M::ggen_map::11945.794*9.63] mapped 317 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] impossible insert between >s68055 and <s113689 derived from the 26-th query at 1186468-1186468
[minigraph]: [W::gfa_ins_filter] impossible insert between <s68055 and >s113689 derived from the 26-th query at 1199065-1199065
[minigraph]: [M::mg_ggsimple_cigar::11948.580*9.63] inserted 1165 events, including 2 inversions
[minigraph]: [M::mg_index::12005.723*9.59] indexed the graph
[minigraph]: [M::mg_opt_update::12010.385*9.59] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::12018.195*9.58] loaded file "HG02080.2.fa"
[minigraph]: [M::ggen_map::12545.311*9.73] mapped 422 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] impossible insert between >s40075 and >s148764 derived from the 44-th query at 24067752-24067752
[minigraph]: [W::gfa_ins_filter] multi-link between >s14319 and >s101284 derived from the 96-th query at 15401780-15401780
[minigraph]: [W::gfa_ins_filter] impossible insert between >s68766 and <s114783 derived from the 205-th query at 1041755-1041755
[minigraph]: [W::gfa_ins_filter] impossible insert between <s68766 and >s114783 derived from the 205-th query at 1054354-1054354
[minigraph]: [M::mg_ggsimple_cigar::12548.195*9.72] inserted 1512 events, including 3 inversions
[minigraph]: [M::mg_index::12605.498*9.69] indexed the graph
[minigraph]: [M::mg_opt_update::12610.028*9.68] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::12617.803*9.68] loaded file "HG02080.1.fa"
[minigraph]: [M::ggen_map::13312.088*9.69] mapped 486 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] impossible insert between <s116532 and >s69934 derived from the 5-th query at 62705283-62705283
[minigraph]: [W::gfa_ins_filter] impossible insert between >s116532 and <s69934 derived from the 5-th query at 62717864-62717864
[minigraph]: [W::gfa_ins_filter] multi-link between <s93132 and <s93130 derived from the 268-th query at 200169-200169
[minigraph]: [W::gfa_ins_filter] multi-link between <s92961 and <s92960 derived from the 365-th query at 47734-47734
[minigraph]: [M::mg_ggsimple_cigar::13314.871*9.69] inserted 1401 events, including 1 inversions
[minigraph]: [M::mg_index::13372.091*9.65] indexed the graph
[minigraph]: [M::mg_opt_update::13376.767*9.65] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::13384.583*9.64] loaded file "HG03579.2.fa"
[minigraph]: [M::ggen_map::13778.856*9.88] mapped 456 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s106753 and <s161426 derived from the 3-th query at 82815519-82815519
[minigraph]: [W::gfa_ins_filter] multi-link between >s4025 and >s4031 derived from the 52-th query at 592651-592651
[minigraph]: [W::gfa_ins_filter] multi-link between <s78896 and <s78895 derived from the 71-th query at 3781240-3781240
[minigraph]: [W::gfa_ins_filter] multi-link between >s77855 and >s77856 derived from the 72-th query at 12561785-12561785
[minigraph]: [M::mg_ggsimple_cigar::13781.656*9.88] inserted 4347 events, including 2 inversions
[minigraph]: [M::mg_index::13839.033*9.84] indexed the graph
[minigraph]: [M::mg_opt_update::13843.656*9.84] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::13851.213*9.84] loaded file "HG03579.1.fa"
[minigraph]: [M::ggen_map::14417.843*10.01] mapped 499 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s11228 and <s181958 derived from the 17-th query at 42149256-42149256
[minigraph]: [W::gfa_ins_filter] multi-link between >s13195 and <s135219 derived from the 44-th query at 31299474-31299474
[minigraph]: [W::gfa_ins_filter] multi-link between <s159043 and <s159042 derived from the 57-th query at 8494673-8494673
[minigraph]: [W::gfa_ins_filter] impossible insert between >s103954 and <s103956 derived from the 115-th query at 11536280-11536280
[minigraph]: [W::gfa_ins_filter] impossible insert between <s103954 and >s103956 derived from the 115-th query at 11546232-11546232
[minigraph]: [M::mg_ggsimple_cigar::14420.787*10.01] inserted 3760 events, including 2 inversions
[minigraph]: [M::mg_index::14478.268*9.98] indexed the graph
[minigraph]: [M::mg_opt_update::14482.612*9.97] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::14490.480*9.97] loaded file "HG00741.2.fa"
1 jobs are running, 0 jobs are issued and waiting to run
[minigraph]: [M::ggen_map::14998.724*10.06] mapped 297 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s123060 and <s123059 derived from the 2-th query at 3735895-3735895
[minigraph]: [W::gfa_ins_filter] multi-link between >s6699 and >s6702 derived from the 19-th query at 9897724-9897724
[minigraph]: [W::gfa_ins_filter] multi-link between <s63068 and <s63067 derived from the 33-th query at 46185198-46185198
[minigraph]: [W::gfa_ins_filter] multi-link between <s76203 and <s76202 derived from the 37-th query at 9299728-9299728
[minigraph]: [W::gfa_ins_filter] multi-link between <s142680 and <s142676 derived from the 44-th query at 38087690-38087690
[minigraph]: [W::gfa_ins_filter] multi-link between <s56337 and <s56335 derived from the 181-th query at 121694-121694
[minigraph]: [W::gfa_ins_filter] multi-link between <s152671 and <s152670 derived from the 183-th query at 483255-483255
[minigraph]: [M::mg_ggsimple_cigar::15001.211*10.06] inserted 1564 events, including 2 inversions
[minigraph]: [M::mg_index::15058.617*10.02] indexed the graph
[minigraph]: [M::mg_opt_update::15062.999*10.02] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::15070.759*10.02] loaded file "HG03492.2.fa"
[minigraph]: [M::ggen_map::15400.413*10.20] mapped 495 sequence(s) to the graph
[minigraph]: [M::mg_ggsimple_cigar::15403.407*10.20] inserted 1597 events, including 3 inversions
[minigraph]: [M::mg_index::15460.936*10.17] indexed the graph
[minigraph]: [M::mg_opt_update::15465.676*10.17] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::15473.484*10.16] loaded file "HG00741.1.fa"
[minigraph]: [M::ggen_map::16362.573*10.03] mapped 289 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s38630 and <s38628 derived from the 4-th query at 63872528-63872528
[minigraph]: [W::gfa_ins_filter] multi-link between >s42592 and >s170045 derived from the 40-th query at 1175916-1175916
[minigraph]: [W::gfa_ins_filter] multi-link between <s132154 and <s132151 derived from the 64-th query at 13098794-13098794
[minigraph]: [W::gfa_ins_filter] multi-link between >s87222 and >s87223 derived from the 150-th query at 1346473-1346473
[minigraph]: [M::mg_ggsimple_cigar::16365.053*10.03] inserted 1385 events, including 2 inversions
[minigraph]: [M::mg_index::16422.667*10.00] indexed the graph
[minigraph]: [M::mg_opt_update::16427.345*10.00] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::16434.914*10.00] loaded file "HG02145.2.fa"
[minigraph]: [M::ggen_map::17279.508*9.96] mapped 437 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s31085 and >s31086 derived from the 52-th query at 16670166-16670166
[minigraph]: [W::gfa_ins_filter] multi-link between >s82004 and >s82006 derived from the 62-th query at 47048229-47048229
[minigraph]: [W::gfa_ins_filter] impossible insert between >s80935 and <s133197 derived from the 62-th query at 4063416-4063416
[minigraph]: [W::gfa_ins_filter] impossible insert between <s80935 and >s133197 derived from the 62-th query at 4075997-4075997
[minigraph]: [M::mg_ggsimple_cigar::17282.902*9.95] inserted 3068 events, including 5 inversions
[minigraph]: [M::mg_index::17340.458*9.93] indexed the graph
[minigraph]: [M::mg_opt_update::17345.166*9.93] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::17352.614*9.92] loaded file "HG02145.1.fa"
[minigraph]: [M::ggen_map::17737.191*10.17] mapped 817 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s26272 and <s26270 derived from the 31-th query at 38006251-38006251
[minigraph]: [W::gfa_ins_filter] multi-link between >s73045 and >s73046 derived from the 51-th query at 3250798-3250798
[minigraph]: [M::mg_ggsimple_cigar::17740.113*10.17] inserted 2586 events, including 1 inversions
[minigraph]: [M::mg_index::17797.568*10.15] indexed the graph
[minigraph]: [M::mg_opt_update::17801.956*10.14] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::17809.463*10.14] loaded file "HG03492.1.fa"
1 jobs are running, 0 jobs are issued and waiting to run
[minigraph]: [M::ggen_map::19220.347*9.83] mapped 618 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s111145 and >s111146 derived from the 20-th query at 5547890-5547890
[minigraph]: [W::gfa_ins_filter] multi-link between <s140253 and <s140250 derived from the 32-th query at 3112601-3112601
[minigraph]: [M::mg_ggsimple_cigar::19223.207*9.83] inserted 1227 events, including 0 inversions
[minigraph]: [M::mg_index::19281.014*9.81] indexed the graph
[minigraph]: [M::mg_opt_update::19285.580*9.81] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::19293.527*9.80] loaded file "HG01071.1.fa"
[minigraph]: [M::ggen_map::20099.161*9.83] mapped 330 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s133271 and <s202341 derived from the 50-th query at 57732668-57732668
[minigraph]: [W::gfa_ins_filter] impossible insert between <s141112 and >s86147 derived from the 77-th query at 6397317-6397317
[minigraph]: [W::gfa_ins_filter] impossible insert between >s141112 and <s86147 derived from the 77-th query at 6409910-6409910
[minigraph]: [W::gfa_ins_filter] multi-link between <s8986 and <s8985 derived from the 122-th query at 5819346-5819346
[minigraph]: [M::mg_ggsimple_cigar::20101.932*9.83] inserted 1193 events, including 1 inversions
[minigraph]: [M::mg_index::20159.658*9.80] indexed the graph
[minigraph]: [M::mg_opt_update::20164.269*9.80] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::20172.060*9.80] loaded file "HG01071.2.fa"
[minigraph]: [M::ggen_map::21195.510*9.65] mapped 236 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s33930 and <s33929 derived from the 2-th query at 12569993-12569993
[minigraph]: [W::gfa_ins_filter] multi-link between <s92564 and <s92561 derived from the 12-th query at 5793145-5793145
[minigraph]: [W::gfa_ins_filter] multi-link between >s15535 and <s154656 derived from the 17-th query at 95256760-95256760
[minigraph]: [W::gfa_ins_filter] impossible insert between <s142300 and >s86871 derived from the 21-th query at 78969080-78969080
[minigraph]: [W::gfa_ins_filter] impossible insert between >s142300 and <s86871 derived from the 21-th query at 78981678-78981678
[minigraph]: [W::gfa_ins_filter] multi-link between <s207766 and <s207765 derived from the 26-th query at 64313486-64313486
[minigraph]: [W::gfa_ins_filter] multi-link between >s122578 and >s122579 derived from the 47-th query at 7018886-7018886
[minigraph]: [W::gfa_ins_filter] impossible insert between <s169176 and <s180641 derived from the 58-th query at 38878095-38878095
[minigraph]: [M::mg_ggsimple_cigar::21198.039*9.65] inserted 1102 events, including 3 inversions
[minigraph]: [M::mg_index::21255.708*9.63] indexed the graph
[minigraph]: [M::mg_opt_update::21260.277*9.63] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::21268.154*9.62] loaded file "HG00673.2.fa"
1 jobs are running, 0 jobs are issued and waiting to run
[minigraph]: [M::ggen_map::22212.175*9.55] mapped 348 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s21553 and >s21554 derived from the 4-th query at 17382357-17382357
[minigraph]: [W::gfa_ins_filter] multi-link between <s19369 and <s19367 derived from the 25-th query at 17785966-17785966
[minigraph]: [W::gfa_ins_filter] multi-link between <s46539 and <s183585 derived from the 90-th query at 40125188-40125188
[minigraph]: [W::gfa_ins_filter] multi-link between >s159852 and >s4723 derived from the 108-th query at 40730613-40730613
[minigraph]: [W::gfa_ins_filter] multi-link between >s4724 and >s4727 derived from the 108-th query at 40736148-40736148
[minigraph]: [W::gfa_ins_filter] multi-link between >s174915 and >s174917 derived from the 116-th query at 7516823-7516823
[minigraph]: [W::gfa_ins_filter] multi-link between >s91633 and >s91635 derived from the 127-th query at 11207360-11207360
[minigraph]: [W::gfa_ins_filter] multi-link between >s167295 and >s167296 derived from the 166-th query at 4210108-4210108
[minigraph]: [M::mg_ggsimple_cigar::22214.851*9.55] inserted 1123 events, including 0 inversions
[minigraph]: [M::mg_index::22272.595*9.53] indexed the graph
[minigraph]: [M::mg_opt_update::22277.042*9.53] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::22284.780*9.53] loaded file "HG00733.2.fa"
[minigraph]: [M::ggen_map::22891.998*9.60] mapped 609 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s90118 and >s144848 derived from the 90-th query at 4455651-4455651
[minigraph]: [M::mg_ggsimple_cigar::22894.505*9.60] inserted 1116 events, including 1 inversions
[minigraph]: [M::mg_index::22952.254*9.58] indexed the graph
[minigraph]: [M::mg_opt_update::22956.808*9.58] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::22964.607*9.58] loaded file "HG00733.1.fa"
[minigraph]: [M::ggen_map::23677.648*9.60] mapped 681 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s4441 and >s4444 derived from the 18-th query at 55605801-55605801
[minigraph]: [W::gfa_ins_filter] multi-link between <s110131 and <s110129 derived from the 21-th query at 1971303-1971303
[minigraph]: [M::mg_ggsimple_cigar::23680.232*9.60] inserted 943 events, including 1 inversions
[minigraph]: [M::mg_index::23737.937*9.58] indexed the graph
[minigraph]: [M::mg_opt_update::23742.399*9.57] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::23750.180*9.57] loaded file "HG02572.2.fa"
[minigraph]: [M::ggen_map::24814.340*9.52] mapped 632 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s68081 and <s68080 derived from the 93-th query at 5475598-5475598
[minigraph]: [W::gfa_ins_filter] multi-link between >s73068 and >s73071 derived from the 149-th query at 10527340-10527340
[minigraph]: [W::gfa_ins_filter] multi-link between <s113422 and <s113421 derived from the 160-th query at 3147055-3147055
[minigraph]: [M::mg_ggsimple_cigar::24817.172*9.52] inserted 2701 events, including 2 inversions
[minigraph]: [M::mg_index::24874.853*9.50] indexed the graph
[minigraph]: [M::mg_opt_update::24879.591*9.50] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::24886.932*9.49] loaded file "HG00673.1.fa"
1 jobs are running, 0 jobs are issued and waiting to run
[minigraph]: [M::ggen_map::25807.703*9.48] mapped 420 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s131792 and <s131791 derived from the 6-th query at 13463310-13463310
[minigraph]: [W::gfa_ins_filter] multi-link between >s219608 and >s219610 derived from the 63-th query at 28899322-28899322
[minigraph]: [W::gfa_ins_filter] multi-link between >s67296 and <s180985 derived from the 68-th query at 6826780-6826780
[minigraph]: [W::gfa_ins_filter] multi-link between >s4600 and >s4603 derived from the 74-th query at 26168835-26168835
[minigraph]: [W::gfa_ins_filter] multi-link between <s154895 and <s154894 derived from the 108-th query at 15298944-15298944
[minigraph]: [M::mg_ggsimple_cigar::25810.398*9.47] inserted 1068 events, including 0 inversions
[minigraph]: [M::mg_index::25868.386*9.46] indexed the graph
[minigraph]: [M::mg_opt_update::25872.958*9.46] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::25880.409*9.45] loaded file "HG02572.1.fa"
[minigraph]: [M::ggen_map::26954.283*9.42] mapped 641 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s114286 and <s114285 derived from the 40-th query at 3094310-3094310
[minigraph]: [W::gfa_ins_filter] multi-link between <s114282 and <s114281 derived from the 40-th query at 3098583-3098583
[minigraph]: [W::gfa_ins_filter] multi-link between >s79140 and >s79142 derived from the 66-th query at 6175639-6175639
[minigraph]: [W::gfa_ins_filter] multi-link between >s77660 and >s77663 derived from the 102-th query at 2644148-2644148
[minigraph]: [M::mg_ggsimple_cigar::26957.344*9.41] inserted 2349 events, including 1 inversions
[minigraph]: [M::mg_index::27015.184*9.40] indexed the graph
[minigraph]: [M::mg_opt_update::27019.662*9.40] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::27027.490*9.39] loaded file "HG00735.1.fa"
[minigraph]: [M::ggen_map::28017.575*9.34] mapped 299 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s135073 and >s135074 derived from the 3-th query at 141309249-141309249
[minigraph]: [W::gfa_ins_filter] impossible insert between <s153574 and >s94119 derived from the 28-th query at 53491016-53491016
[minigraph]: [W::gfa_ins_filter] impossible insert between >s153574 and <s94119 derived from the 28-th query at 53503609-53503609
[minigraph]: [W::gfa_ins_filter] multi-link between >s147569 and >s147572 derived from the 80-th query at 6006626-6006626
[minigraph]: [W::gfa_ins_filter] multi-link between <s36662 and <s36661 derived from the 85-th query at 306324-306324
[minigraph]: [M::mg_ggsimple_cigar::28020.079*9.34] inserted 1066 events, including 1 inversions
[minigraph]: [M::mg_index::28077.753*9.33] indexed the graph
[minigraph]: [M::mg_opt_update::28082.432*9.33] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::28090.319*9.32] loaded file "HG02257.1.fa"
[minigraph]: [M::ggen_map::28556.440*9.43] mapped 306 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s43896 and <s43895 derived from the 21-th query at 11628786-11628786
[minigraph]: [W::gfa_ins_filter] multi-link between >s184061 and >s184062 derived from the 30-th query at 63337721-63337721
[minigraph]: [W::gfa_ins_filter] multi-link between >s112135 and >s112136 derived from the 49-th query at 536462-536462
[minigraph]: [W::gfa_ins_filter] multi-link between >s36656 and >s36657 derived from the 53-th query at 31408149-31408149
[minigraph]: [M::mg_ggsimple_cigar::28558.730*9.43] inserted 2254 events, including 2 inversions
[minigraph]: [M::mg_index::28616.363*9.41] indexed the graph
[minigraph]: [M::mg_opt_update::28620.990*9.41] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::28628.783*9.41] loaded file "HG02148.2.fa"
1 jobs are running, 0 jobs are issued and waiting to run
[minigraph]: [M::ggen_map::29478.323*9.42] mapped 423 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s205276 and <s242829 derived from the 11-th query at 24140225-24140225
[minigraph]: [W::gfa_ins_filter] impossible insert between >s96337 and <s157120 derived from the 27-th query at 4204460-4204460
[minigraph]: [W::gfa_ins_filter] impossible insert between <s96337 and >s157120 derived from the 27-th query at 4217056-4217056
[minigraph]: [W::gfa_ins_filter] multi-link between <s31749 and <s31748 derived from the 39-th query at 39058758-39058758
[minigraph]: [M::mg_ggsimple_cigar::29481.062*9.42] inserted 840 events, including 2 inversions
[minigraph]: [M::mg_index::29539.007*9.41] indexed the graph
[minigraph]: [M::mg_opt_update::29543.642*9.41] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::29551.364*9.40] loaded file "HG01123.1.fa"
[minigraph]: [M::ggen_map::29942.421*9.53] mapped 436 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s93473 and <s93471 derived from the 5-th query at 76287957-76287957
[minigraph]: [W::gfa_ins_filter] multi-link between >s151691 and >s151694 derived from the 10-th query at 105389300-105389300
[minigraph]: [W::gfa_ins_filter] multi-link between <s54501 and <s54496 derived from the 12-th query at 81781157-81781157
[minigraph]: [W::gfa_ins_filter] impossible insert between >s198608 and <s198610 derived from the 47-th query at 57689637-57689637
[minigraph]: [W::gfa_ins_filter] impossible insert between <s198608 and >s198610 derived from the 47-th query at 57692614-57692614
[minigraph]: [W::gfa_ins_filter] multi-link between >s242262 and >s242263 derived from the 78-th query at 3001304-3001304
[minigraph]: [M::mg_ggsimple_cigar::29944.882*9.53] inserted 868 events, including 2 inversions
[minigraph]: [M::mg_index::30002.549*9.52] indexed the graph
[minigraph]: [M::mg_opt_update::30007.012*9.52] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::30014.577*9.51] loaded file "HG02148.1.fa"
[minigraph]: [M::ggen_map::31160.998*9.43] mapped 487 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s162538 and >s162539 derived from the 85-th query at 11457366-11457366
[minigraph]: [W::gfa_ins_filter] multi-link between <s190730 and <s190729 derived from the 129-th query at 2847039-2847039
[minigraph]: [M::mg_ggsimple_cigar::31163.436*9.43] inserted 654 events, including 1 inversions
[minigraph]: [M::mg_index::31221.120*9.42] indexed the graph
[minigraph]: [M::mg_opt_update::31225.534*9.41] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::31233.285*9.41] loaded file "HG01123.2.fa"
[minigraph]: [M::ggen_map::31964.287*9.42] mapped 340 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s73046 and >s73047 derived from the 23-th query at 30880773-30880773
[minigraph]: [W::gfa_ins_filter] impossible insert between >s209930 and <s209932 derived from the 37-th query at 292025-292025
[minigraph]: [W::gfa_ins_filter] impossible insert between <s209930 and >s209932 derived from the 37-th query at 295002-295002
[minigraph]: [W::gfa_ins_filter] multi-link between >s152978 and >s152981 derived from the 57-th query at 6007180-6007180
[minigraph]: [W::gfa_ins_filter] multi-link between >s168105 and >s168106 derived from the 72-th query at 4578325-4578325
[minigraph]: [M::mg_ggsimple_cigar::31966.799*9.42] inserted 858 events, including 2 inversions
[minigraph]: [M::mg_index::32024.536*9.40] indexed the graph
[minigraph]: [M::mg_opt_update::32029.145*9.40] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::32037.002*9.40] loaded file "HG02486.2.fa"
1 jobs are running, 0 jobs are issued and waiting to run
[minigraph]: [M::ggen_map::33236.932*9.30] mapped 283 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s153686 and >s153689 derived from the 0-th query at 51650241-51650241
[minigraph]: [W::gfa_ins_filter] multi-link between <s33010 and <s33008 derived from the 34-th query at 17718785-17718785
[minigraph]: [W::gfa_ins_filter] multi-link between <s160321 and <s160317 derived from the 69-th query at 12664963-12664963
[minigraph]: [W::gfa_ins_filter] multi-link between >s146147 and <s211423 derived from the 85-th query at 6333900-6333900
[minigraph]: [M::mg_ggsimple_cigar::33239.502*9.30] inserted 1805 events, including 1 inversions
[minigraph]: [M::mg_index::33297.298*9.29] indexed the graph
[minigraph]: [M::mg_opt_update::33301.969*9.29] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::33309.779*9.29] loaded file "HG00735.2.fa"
[minigraph]: [M::ggen_map::33875.068*9.36] mapped 244 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] impossible insert between >s203427 and >s203427 derived from the 1-th query at 57590640-57590640
[minigraph]: [W::gfa_ins_filter] impossible insert between <s203427 and <s203427 derived from the 1-th query at 57593617-57593617
[minigraph]: [W::gfa_ins_filter] multi-link between >s83934 and >s181505 derived from the 5-th query at 54389592-54389592
[minigraph]: [W::gfa_ins_filter] multi-link between <s150402 and <s150399 derived from the 62-th query at 3128812-3128812
[minigraph]: [W::gfa_ins_filter] multi-link between >s170978 and >s170979 derived from the 68-th query at 25964301-25964301
[minigraph]: [M::mg_ggsimple_cigar::33877.457*9.36] inserted 951 events, including 1 inversions
[minigraph]: [M::mg_index::33935.414*9.35] indexed the graph
[minigraph]: [M::mg_opt_update::33940.167*9.35] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::33947.989*9.34] loaded file "HG01243.2.fa"
[minigraph]: [M::ggen_map::34452.650*9.42] mapped 345 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s53839 and <s53838 derived from the 7-th query at 32603322-32603322
[minigraph]: [W::gfa_ins_filter] multi-link between <s250936 and <s250935 derived from the 9-th query at 32231379-32231379
[minigraph]: [W::gfa_ins_filter] multi-link between <s158430 and <s158429 derived from the 43-th query at 28124495-28124495
[minigraph]: [W::gfa_ins_filter] impossible insert between >s214381 and <s214383 derived from the 95-th query at 4698964-4698964
[minigraph]: [W::gfa_ins_filter] impossible insert between <s214381 and >s214383 derived from the 95-th query at 4701941-4701941
[minigraph]: [W::gfa_ins_filter] impossible insert between >s100012 and <s162901 derived from the 109-th query at 7527149-7527149
[minigraph]: [W::gfa_ins_filter] impossible insert between <s100012 and >s162901 derived from the 109-th query at 7539745-7539745
[minigraph]: [W::gfa_ins_filter] impossible insert between <s201020 and <s192907 derived from the 118-th query at 1199658-1199658
[minigraph]: [M::mg_ggsimple_cigar::34455.641*9.42] inserted 1604 events, including 3 inversions
[minigraph]: [M::mg_index::34513.605*9.40] indexed the graph
[minigraph]: [M::mg_opt_update::34518.362*9.40] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::34526.144*9.40] loaded file "HG01891.2.fa"
[minigraph]: [M::ggen_map::35555.652*9.36] mapped 331 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s189115 and >s189117 derived from the 15-th query at 31135703-31135703
[minigraph]: [W::gfa_ins_filter] multi-link between <s105899 and <s105898 derived from the 24-th query at 12035433-12035433
[minigraph]: [W::gfa_ins_filter] multi-link between <s225058 and <s13683 derived from the 43-th query at 789382-789382
[minigraph]: [M::mg_ggsimple_cigar::35558.011*9.36] inserted 2009 events, including 1 inversions
[minigraph]: [M::mg_index::35616.098*9.35] indexed the graph
[minigraph]: [M::mg_opt_update::35620.803*9.34] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::35628.569*9.34] loaded file "HG02257.2.fa"
[minigraph]: [M::ggen_map::36312.807*9.39] mapped 292 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s162541 and <s162540 derived from the 0-th query at 9233106-9233106
[minigraph]: [W::gfa_ins_filter] multi-link between <s11114 and <s197238 derived from the 9-th query at 64082944-64082944
[minigraph]: [W::gfa_ins_filter] multi-link between >s144792 and >s144793 derived from the 17-th query at 16764417-16764417
[minigraph]: [W::gfa_ins_filter] multi-link between >s223269 and >s223271 derived from the 32-th query at 37496966-37496966
[minigraph]: [M::mg_ggsimple_cigar::36315.037*9.39] inserted 1652 events, including 0 inversions
[minigraph]: [M::mg_index::36373.048*9.38] indexed the graph
[minigraph]: [M::mg_opt_update::36377.550*9.38] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::36385.178*9.38] loaded file "HG01891.1.fa"
1 jobs are running, 0 jobs are issued and waiting to run
[minigraph]: [M::ggen_map::37570.995*9.30] mapped 427 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s146250 and <s257187 derived from the 13-th query at 20746615-20746615
[minigraph]: [W::gfa_ins_filter] multi-link between <s56940 and <s56939 derived from the 47-th query at 6081043-6081043
[minigraph]: [W::gfa_ins_filter] impossible insert between >s176918 and <s134732 derived from the 52-th query at 2447096-2447096
[minigraph]: [W::gfa_ins_filter] impossible insert between <s176918 and >s134732 derived from the 52-th query at 2552147-2552147
[minigraph]: [W::gfa_ins_filter] multi-link between <s169022 and <s169017 derived from the 58-th query at 13066982-13066982
[minigraph]: [W::gfa_ins_filter] multi-link between <s116826 and <s116825 derived from the 71-th query at 289426-289426
[minigraph]: [M::mg_ggsimple_cigar::37573.421*9.30] inserted 1702 events, including 2 inversions
[minigraph]: [M::mg_index::37631.352*9.29] indexed the graph
[minigraph]: [M::mg_opt_update::37636.035*9.29] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::37643.489*9.29] loaded file "HG01243.1.fa"
[minigraph]: [M::ggen_map::38162.173*9.36] mapped 436 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s172013 and >s112328 derived from the 6-th query at 15156228-15156228
[minigraph]: [W::gfa_ins_filter] multi-link between <s77709 and <s77705 derived from the 19-th query at 27967226-27967226
[minigraph]: [W::gfa_ins_filter] multi-link between <s24540 and <s24539 derived from the 21-th query at 21798352-21798352
[minigraph]: [W::gfa_ins_filter] multi-link between <s131447 and <s131446 derived from the 29-th query at 11035843-11035843
[minigraph]: [W::gfa_ins_filter] multi-link between <s233766 and <s233765 derived from the 43-th query at 1966122-1966122
[minigraph]: [W::gfa_ins_filter] impossible insert between <s146202 and >s146200 derived from the 88-th query at 1438036-1438036
[minigraph]: [W::gfa_ins_filter] impossible insert between >s146202 and <s146200 derived from the 88-th query at 1447991-1447991
[minigraph]: [W::gfa_ins_filter] multi-link between >s250114 and >s114881 derived from the 91-th query at 6295818-6295818
[minigraph]: [W::gfa_ins_filter] multi-link between >s278587 and >s278589 derived from the 172-th query at 568304-568304
[minigraph]: [M::mg_ggsimple_cigar::38164.989*9.36] inserted 1350 events, including 2 inversions
[minigraph]: [M::mg_index::38222.809*9.35] indexed the graph
[minigraph]: [M::mg_opt_update::38227.563*9.35] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::38237.116*9.35] loaded file "HG02486.1.fa"
[minigraph]: [M::ggen_map::38687.640*9.46] mapped 342 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s272607 and >s272608 derived from the 23-th query at 9048114-9048114
[minigraph]: [W::gfa_ins_filter] multi-link between <s42083 and <s42082 derived from the 24-th query at 1653648-1653648
[minigraph]: [W::gfa_ins_filter] multi-link between <s167395 and <s167394 derived from the 31-th query at 40620966-40620966
[minigraph]: [W::gfa_ins_filter] multi-link between >s163331 and <s220071 derived from the 40-th query at 32397223-32397223
[minigraph]: [W::gfa_ins_filter] multi-link between >s162999 and <s240529 derived from the 73-th query at 6496183-6496183
[minigraph]: [W::gfa_ins_filter] multi-link between <s16107 and <s242238 derived from the 77-th query at 5848780-5848780
[minigraph]: [W::gfa_ins_filter] multi-link between <s172420 and <s172415 derived from the 93-th query at 13037336-13037336
[minigraph]: [W::gfa_ins_filter] multi-link between >s129040 and >s129041 derived from the 135-th query at 83894-83894
[minigraph]: [M::mg_ggsimple_cigar::38690.007*9.46] inserted 1653 events, including 2 inversions
[minigraph]: [M::mg_index::38747.860*9.44] indexed the graph
[minigraph]: [M::mg_opt_update::38752.243*9.44] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::38760.021*9.44] loaded file "HG01175.2.fa"
[minigraph]: [M::ggen_map::39558.391*9.46] mapped 315 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s109556 and >s174166 derived from the 18-th query at 11892386-11892386
[minigraph]: [W::gfa_ins_filter] multi-link between <s5013 and <s201535 derived from the 30-th query at 41964492-41964492
[minigraph]: [W::gfa_ins_filter] multi-link between <s114313 and <s114310 derived from the 75-th query at 5299082-5299082
[minigraph]: [W::gfa_ins_filter] multi-link between <s135784 and <s135783 derived from the 125-th query at 5639907-5639907
[minigraph]: [W::gfa_ins_filter] impossible insert between <s213051 and <s204740 derived from the 217-th query at 1281692-1281692
[minigraph]: [W::gfa_ins_filter] impossible insert between >s213051 and >s204740 derived from the 217-th query at 1321890-1321890
[minigraph]: [M::mg_ggsimple_cigar::39561.052*9.46] inserted 777 events, including 2 inversions
[minigraph]: [M::mg_index::39619.101*9.45] indexed the graph
[minigraph]: [M::mg_opt_update::39623.755*9.45] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::39631.500*9.45] loaded file "HG01175.1.fa"
1 jobs are running, 0 jobs are issued and waiting to run
[minigraph]: [M::ggen_map::40048.841*9.55] mapped 365 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s231185 and >s231186 derived from the 14-th query at 5447077-5447077
[minigraph]: [W::gfa_ins_filter] impossible insert between <s227638 and >s227636 derived from the 35-th query at 59346199-59346199
[minigraph]: [W::gfa_ins_filter] impossible insert between >s227638 and <s227636 derived from the 35-th query at 59349176-59349176
[minigraph]: [W::gfa_ins_filter] multi-link between <s162384 and <s162381 derived from the 89-th query at 3093066-3093066
[minigraph]: [W::gfa_ins_filter] multi-link between >s28732 and >s28733 derived from the 96-th query at 952493-952493
[minigraph]: [W::gfa_ins_filter] impossible insert between <s213857 and <s205503 derived from the 150-th query at 1224657-1224657
[minigraph]: [W::gfa_ins_filter] impossible insert between >s213857 and >s205503 derived from the 150-th query at 1264861-1264861
[minigraph]: [M::mg_ggsimple_cigar::40051.525*9.55] inserted 822 events, including 2 inversions
[minigraph]: [M::mg_index::40109.521*9.54] indexed the graph
[minigraph]: [M::mg_opt_update::40113.870*9.54] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::40121.851*9.53] loaded file "HG03098.2.fa"
[minigraph]: [M::ggen_map::41551.822*9.43] mapped 331 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s129584 and <s129583 derived from the 71-th query at 9276906-9276906
[minigraph]: [W::gfa_ins_filter] multi-link between <s175723 and <s175722 derived from the 97-th query at 258557-258557
[minigraph]: [W::gfa_ins_filter] multi-link between >s107587 and <s258912 derived from the 177-th query at 5099546-5099546
[minigraph]: [M::mg_ggsimple_cigar::41554.441*9.43] inserted 1802 events, including 0 inversions
[minigraph]: [M::mg_index::41612.652*9.42] indexed the graph
[minigraph]: [M::mg_opt_update::41617.169*9.42] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::41624.852*9.42] loaded file "HG03098.1.fa"
[minigraph]: [M::ggen_map::42196.607*9.50] mapped 445 sequence(s) to the graph
[minigraph]: [M::mg_ggsimple_cigar::42199.137*9.50] inserted 1661 events, including 1 inversions
[minigraph]: [M::mg_index::42257.057*9.49] indexed the graph
[minigraph]: [M::mg_opt_update::42261.813*9.49] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::42269.681*9.49] loaded file "HG00438.2.fa"
[minigraph]: [M::ggen_map::42882.880*9.57] mapped 258 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s172126 and >s172129 derived from the 1-th query at 105322322-105322322
[minigraph]: [W::gfa_ins_filter] multi-link between >s87859 and >s87860 derived from the 1-th query at 135577067-135577067
[minigraph]: [W::gfa_ins_filter] multi-link between >s81498 and <s213452 derived from the 1-th query at 6358093-6358093
[minigraph]: [W::gfa_ins_filter] multi-link between >s137669 and >s137672 derived from the 17-th query at 10607193-10607193
[minigraph]: [W::gfa_ins_filter] multi-link between <s6543 and <s6541 derived from the 86-th query at 2108862-2108862
[minigraph]: [M::mg_ggsimple_cigar::42885.550*9.57] inserted 901 events, including 1 inversions
[minigraph]: [M::mg_index::42943.471*9.55] indexed the graph
[minigraph]: [M::mg_opt_update::42948.191*9.55] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::42956.031*9.55] loaded file "HG00438.1.fa"
1 jobs are running, 0 jobs are issued and waiting to run
[minigraph]: [M::ggen_map::43733.877*9.58] mapped 276 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s172943 and >s172946 derived from the 21-th query at 38144905-38144905
[minigraph]: [W::gfa_ins_filter] multi-link between <s41657 and <s41656 derived from the 75-th query at 10412535-10412535
[minigraph]: [M::mg_ggsimple_cigar::43736.394*9.58] inserted 752 events, including 1 inversions
[minigraph]: [M::mg_index::43794.371*9.57] indexed the graph
[minigraph]: [M::mg_opt_update::43798.669*9.57] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::43806.501*9.56] loaded file "HG02886.2.fa"
[minigraph]: [M::ggen_map::44291.504*9.65] mapped 461 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s181854 and >s119312 derived from the 4-th query at 21669356-21669356
[minigraph]: [W::gfa_ins_filter] multi-link between <s237159 and <s237158 derived from the 11-th query at 33843048-33843048
[minigraph]: [W::gfa_ins_filter] multi-link between <s108401 and <s108400 derived from the 19-th query at 61056213-61056213
[minigraph]: [W::gfa_ins_filter] multi-link between <s206293 and <s206289 derived from the 36-th query at 49005351-49005351
[minigraph]: [W::gfa_ins_filter] impossible insert between <s180355 and >s111635 derived from the 39-th query at 54047660-54047660
[minigraph]: [W::gfa_ins_filter] impossible insert between >s180355 and <s111635 derived from the 39-th query at 54060252-54060252
[minigraph]: [M::mg_ggsimple_cigar::44294.341*9.65] inserted 1483 events, including 2 inversions
[minigraph]: [M::mg_index::44352.279*9.64] indexed the graph
[minigraph]: [M::mg_opt_update::44356.755*9.64] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::44364.573*9.64] loaded file "HG02886.1.fa"
[minigraph]: [M::ggen_map::45590.309*9.59] mapped 503 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s125048 and <s125047 derived from the 19-th query at 13832280-13832280
[minigraph]: [W::gfa_ins_filter] multi-link between <s120425 and <s183389 derived from the 50-th query at 3176562-3176562
[minigraph]: [W::gfa_ins_filter] multi-link between <s155479 and <s155476 derived from the 143-th query at 815787-815787
[minigraph]: [W::gfa_ins_filter] multi-link between <s254466 and <s254464 derived from the 182-th query at 1468686-1468686
[minigraph]: [M::mg_ggsimple_cigar::45593.043*9.59] inserted 1435 events, including 0 inversions
[minigraph]: [M::mg_index::45651.148*9.58] indexed the graph
[minigraph]: [M::mg_opt_update::45655.829*9.58] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::45663.610*9.57] loaded file "HG02723.2.fa"
[minigraph]: [M::ggen_map::46087.539*9.66] mapped 429 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s162917 and <s162916 derived from the 51-th query at 16579536-16579536
[minigraph]: [W::gfa_ins_filter] multi-link between <s168043 and <s242077 derived from the 75-th query at 7637455-7637455
[minigraph]: [W::gfa_ins_filter] multi-link between <s184169 and <s184168 derived from the 144-th query at 7320238-7320238
[minigraph]: [W::gfa_ins_filter] multi-link between >s116115 and >s116116 derived from the 159-th query at 7049863-7049863
[minigraph]: [W::gfa_ins_filter] multi-link between >s162701 and >s162702 derived from the 206-th query at 1549627-1549627
[minigraph]: [M::mg_ggsimple_cigar::46090.328*9.66] inserted 1548 events, including 0 inversions
[minigraph]: [M::mg_index::46148.282*9.65] indexed the graph
[minigraph]: [M::mg_opt_update::46152.694*9.65] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::46160.402*9.65] loaded file "HG02559.1.fa"
[minigraph]: [M::ggen_map::46693.834*9.71] mapped 260 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s17429 and <s258377 derived from the 39-th query at 107225786-107225786
[minigraph]: [W::gfa_ins_filter] multi-link between <s185626 and <s185621 derived from the 47-th query at 13069264-13069264
[minigraph]: [W::gfa_ins_filter] multi-link between <s85056 and <s85052 derived from the 55-th query at 27519729-27519729
[minigraph]: [W::gfa_ins_filter] multi-link between <s106276 and <s106274 derived from the 58-th query at 11737056-11737056
[minigraph]: [M::mg_ggsimple_cigar::46696.033*9.71] inserted 1464 events, including 0 inversions
[minigraph]: [M::mg_index::46754.295*9.70] indexed the graph
[minigraph]: [M::mg_opt_update::46758.890*9.70] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::46766.737*9.70] loaded file "HG02622.2.fa"
1 jobs are running, 0 jobs are issued and waiting to run
[minigraph]: [M::ggen_map::47498.960*9.74] mapped 292 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s211545 and >s211546 derived from the 5-th query at 11336569-11336569
[minigraph]: [W::gfa_ins_filter] multi-link between <s108135 and <s108134 derived from the 8-th query at 40229991-40229991
[minigraph]: [W::gfa_ins_filter] multi-link between >s142382 and <s273029 derived from the 20-th query at 16278210-16278210
[minigraph]: [W::gfa_ins_filter] multi-link between <s233841 and >s267186 derived from the 38-th query at 3795497-3795497
[minigraph]: [W::gfa_ins_filter] multi-link between <s45163 and <s45162 derived from the 51-th query at 13191183-13191183
[minigraph]: [W::gfa_ins_filter] multi-link between >s32498 and >s32499 derived from the 74-th query at 4397682-4397682
[minigraph]: [M::mg_ggsimple_cigar::47501.425*9.74] inserted 1348 events, including 0 inversions
[minigraph]: [M::mg_index::47559.597*9.73] indexed the graph
[minigraph]: [M::mg_opt_update::47564.301*9.73] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::47572.193*9.72] loaded file "HG02717.2.fa"
[minigraph]: [M::ggen_map::49077.153*9.62] mapped 323 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s152229 and <s152228 derived from the 107-th query at 1891663-1891663
[minigraph]: [W::gfa_ins_filter] multi-link between <s147777 and <s147776 derived from the 147-th query at 3902907-3902907
[minigraph]: [M::mg_ggsimple_cigar::49079.761*9.61] inserted 1264 events, including 0 inversions
[minigraph]: [M::mg_index::49138.301*9.61] indexed the graph
[minigraph]: [M::mg_opt_update::49143.254*9.60] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::49151.080*9.60] loaded file "HG02559.2.fa"
1 jobs are running, 0 jobs are issued and waiting to run
[minigraph]: [M::ggen_map::50977.412*9.44] mapped 329 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s141943 and <s141942 derived from the 21-th query at 12913654-12913654
[minigraph]: [W::gfa_ins_filter] multi-link between <s179899 and >s261646 derived from the 40-th query at 1710778-1710778
[minigraph]: [W::gfa_ins_filter] impossible insert between >s281911 and <s281913 derived from the 40-th query at 59384230-59384230
[minigraph]: [W::gfa_ins_filter] impossible insert between <s281911 and >s281913 derived from the 40-th query at 59386489-59386489
[minigraph]: [W::gfa_ins_filter] impossible insert between >s234446 and <s234448 derived from the 40-th query at 59683782-59683782
[minigraph]: [W::gfa_ins_filter] impossible insert between <s234446 and >s234448 derived from the 40-th query at 59686758-59686758
[minigraph]: [W::gfa_ins_filter] impossible insert between >s234478 and <s234481 derived from the 40-th query at 59795494-59795494
[minigraph]: [W::gfa_ins_filter] impossible insert between <s234478 and >s234481 derived from the 40-th query at 59795797-59795797
[minigraph]: [W::gfa_ins_filter] multi-link between <s153463 and <s153462 derived from the 45-th query at 5615371-5615371
[minigraph]: [W::gfa_ins_filter] multi-link between <s16429 and <s16428 derived from the 67-th query at 33310373-33310373
[minigraph]: [M::mg_ggsimple_cigar::50979.901*9.44] inserted 1245 events, including 4 inversions
[minigraph]: [M::mg_index::51038.077*9.43] indexed the graph
[minigraph]: [M::mg_opt_update::51042.632*9.43] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::51050.518*9.43] loaded file "HG02723.1.fa"
[minigraph]: [M::ggen_map::51762.870*9.47] mapped 529 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s80108 and >s183029 derived from the 12-th query at 400461-400461
[minigraph]: [W::gfa_ins_filter] multi-link between >s294262 and >s294263 derived from the 196-th query at 1295852-1295852
[minigraph]: [M::mg_ggsimple_cigar::51765.522*9.47] inserted 1283 events, including 0 inversions
[minigraph]: [M::mg_index::51823.576*9.47] indexed the graph
[minigraph]: [M::mg_opt_update::51828.047*9.47] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::51835.679*9.46] loaded file "HG02622.1.fa"
[minigraph]: [M::ggen_map::52563.215*9.50] mapped 270 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s155643 and <s155642 derived from the 0-th query at 5616474-5616474
[minigraph]: [W::gfa_ins_filter] multi-link between >s115923 and <s321778 derived from the 4-th query at 38753380-38753380
[minigraph]: [W::gfa_ins_filter] multi-link between >s161267 and >s161268 derived from the 5-th query at 30754239-30754239
[minigraph]: [W::gfa_ins_filter] impossible insert between <s191965 and >s119424 derived from the 10-th query at 78478468-78478468
[minigraph]: [W::gfa_ins_filter] impossible insert between >s191965 and <s119424 derived from the 10-th query at 78491066-78491066
[minigraph]: [W::gfa_ins_filter] multi-link between <s182372 and >s264714 derived from the 30-th query at 1692664-1692664
[minigraph]: [W::gfa_ins_filter] multi-link between >s124130 and <s297322 derived from the 56-th query at 4547663-4547663
[minigraph]: [W::gfa_ins_filter] multi-link between >s159157 and >s159158 derived from the 141-th query at 790254-790254
[minigraph]: [M::mg_ggsimple_cigar::52565.503*9.50] inserted 1169 events, including 3 inversions
[minigraph]: [M::mg_index::52626.045*9.49] indexed the graph
[minigraph]: [M::mg_opt_update::52630.642*9.49] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::52638.120*9.49] loaded file "HG02717.1.fa"
[minigraph]: [M::ggen_map::54307.991*9.41] mapped 399 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s39502 and <s227921 derived from the 1-th query at 50345915-50345915
[minigraph]: [W::gfa_ins_filter] multi-link between >s147645 and <s281090 derived from the 23-th query at 1357546-1357546
[minigraph]: [W::gfa_ins_filter] multi-link between <s116674 and <s116673 derived from the 35-th query at 7153272-7153272
[minigraph]: [W::gfa_ins_filter] multi-link between >s183505 and <s266155 derived from the 67-th query at 2242304-2242304
[minigraph]: [W::gfa_ins_filter] multi-link between <s44982 and <s44981 derived from the 97-th query at 10307605-10307605
[minigraph]: [M::mg_ggsimple_cigar::54310.727*9.41] inserted 1159 events, including 1 inversions
[minigraph]: [M::mg_index::54369.028*9.40] indexed the graph
[minigraph]: [M::mg_opt_update::54373.935*9.40] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::54381.788*9.40] loaded file "HG02630.2.fa"
1 jobs are running, 0 jobs are issued and waiting to run
[minigraph]: [M::ggen_map::55177.770*9.43] mapped 497 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s117457 and <s117456 derived from the 21-th query at 7152444-7152444
[minigraph]: [W::gfa_ins_filter] multi-link between >s157644 and <s333164 derived from the 27-th query at 10889148-10889148
[minigraph]: [W::gfa_ins_filter] multi-link between <s39770 and <s229188 derived from the 41-th query at 12424017-12424017
[minigraph]: [W::gfa_ins_filter] multi-link between <s149517 and <s149513 derived from the 149-th query at 4898331-4898331
[minigraph]: [W::gfa_ins_filter] multi-link between >s264514 and >s264515 derived from the 180-th query at 145392-145392
[minigraph]: [M::mg_ggsimple_cigar::55180.735*9.43] inserted 1160 events, including 0 inversions
[minigraph]: [M::mg_index::55239.140*9.42] indexed the graph
[minigraph]: [M::mg_opt_update::55243.813*9.42] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::55251.567*9.42] loaded file "HG03486.2.fa"
[minigraph]: [M::ggen_map::55970.626*9.47] mapped 480 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s185707 and >s268862 derived from the 25-th query at 826177-826177
[minigraph]: [W::gfa_ins_filter] multi-link between <s45516 and <s45515 derived from the 32-th query at 9963989-9963989
[minigraph]: [W::gfa_ins_filter] multi-link between <s158562 and <s158561 derived from the 84-th query at 5620417-5620417
[minigraph]: [W::gfa_ins_filter] impossible insert between >s121711 and <s195396 derived from the 87-th query at 9986031-9986031
[minigraph]: [W::gfa_ins_filter] impossible insert between <s121711 and >s195396 derived from the 87-th query at 9998628-9998628
[minigraph]: [W::gfa_ins_filter] multi-link between <s150393 and <s150389 derived from the 227-th query at 4894407-4894407
[minigraph]: [M::mg_ggsimple_cigar::55973.582*9.47] inserted 1269 events, including 2 inversions
[minigraph]: [M::mg_index::56031.830*9.46] indexed the graph
[minigraph]: [M::mg_opt_update::56036.448*9.46] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::56044.288*9.46] loaded file "HG02630.1.fa"
[minigraph]: [M::ggen_map::56780.295*9.50] mapped 532 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s51717 and <s51716 derived from the 61-th query at 24652739-24652739
[minigraph]: [M::mg_ggsimple_cigar::56782.893*9.50] inserted 1167 events, including 1 inversions
[minigraph]: [M::mg_index::56841.249*9.49] indexed the graph
[minigraph]: [M::mg_opt_update::56845.818*9.49] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::56853.559*9.49] loaded file "HG03486.1.fa"
[minigraph]: [M::ggen_map::57222.435*9.58] mapped 519 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] impossible insert between >s123373 and <s197896 derived from the 9-th query at 6207733-6207733
[minigraph]: [W::gfa_ins_filter] impossible insert between <s123373 and >s197896 derived from the 9-th query at 6220329-6220329
[minigraph]: [W::gfa_ins_filter] multi-link between <s131858 and <s199469 derived from the 50-th query at 3329582-3329582
[minigraph]: [W::gfa_ins_filter] multi-link between >s115064 and >s115066 derived from the 133-th query at 5968680-5968680
[minigraph]: [M::mg_ggsimple_cigar::57225.274*9.58] inserted 1164 events, including 1 inversions
[minigraph]: [M::mg_index::57283.576*9.58] indexed the graph
[minigraph]: [M::mg_opt_update::57288.235*9.57] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::57296.007*9.57] loaded file "HG03453.1.fa"
1 jobs are running, 0 jobs are issued and waiting to run
[minigraph]: [M::ggen_map::58547.097*9.53] mapped 480 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s152471 and <s288326 derived from the 31-th query at 1362992-1362992
[minigraph]: [W::gfa_ins_filter] multi-link between >s86007 and >s86008 derived from the 50-th query at 11090301-11090301
[minigraph]: [W::gfa_ins_filter] multi-link between >s66790 and <s268431 derived from the 64-th query at 22750338-22750338
[minigraph]: [W::gfa_ins_filter] multi-link between <s120475 and <s120474 derived from the 65-th query at 14382250-14382250
[minigraph]: [W::gfa_ins_filter] multi-link between >s294239 and >s294240 derived from the 83-th query at 25369029-25369029
[minigraph]: [W::gfa_ins_filter] multi-link between >s290369 and >s290370 derived from the 96-th query at 3338504-3338504
[minigraph]: [W::gfa_ins_filter] multi-link between <s157376 and >s307767 derived from the 112-th query at 22327146-22327146
[minigraph]: [W::gfa_ins_filter] multi-link between >s70083 and <s347645 derived from the 118-th query at 16010770-16010770
[minigraph]: [W::gfa_ins_filter] multi-link between <s188697 and <s188696 derived from the 119-th query at 3510425-3510425
[minigraph]: [W::gfa_ins_filter] multi-link between >s169060 and >s169061 derived from the 171-th query at 3355243-3355243
[minigraph]: [M::mg_ggsimple_cigar::58549.740*9.53] inserted 1211 events, including 0 inversions
[minigraph]: [M::mg_index::58607.915*9.53] indexed the graph
[minigraph]: [M::mg_opt_update::58612.586*9.52] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::58620.387*9.52] loaded file "NA21309.2.fa"
[minigraph]: [M::ggen_map::60376.017*9.43] mapped 501 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s133087 and <s133084 derived from the 108-th query at 1480501-1480501
[minigraph]: [W::gfa_ins_filter] multi-link between >s152975 and >s152976 derived from the 151-th query at 4605684-4605684
[minigraph]: [W::gfa_ins_filter] multi-link between <s347260 and >s98890 derived from the 210-th query at 911410-911410
[minigraph]: [M::mg_ggsimple_cigar::60378.642*9.43] inserted 1276 events, including 0 inversions
[minigraph]: [M::mg_index::60436.808*9.42] indexed the graph
[minigraph]: [M::mg_opt_update::60441.219*9.42] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::60448.974*9.42] loaded file "NA21309.1.fa"
[minigraph]: [M::ggen_map::60923.909*9.48] mapped 608 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s185385 and <s185383 derived from the 30-th query at 11166986-11166986
[minigraph]: [W::gfa_ins_filter] multi-link between >s154401 and <s291320 derived from the 79-th query at 1348241-1348241
[minigraph]: [W::gfa_ins_filter] impossible insert between >s125715 and <s201416 derived from the 244-th query at 3366154-3366154
[minigraph]: [W::gfa_ins_filter] impossible insert between <s125715 and >s201416 derived from the 244-th query at 3378750-3378750
[minigraph]: [W::gfa_ins_filter] multi-link between >s163727 and <s343439 derived from the 284-th query at 358617-358617
[minigraph]: [M::mg_ggsimple_cigar::60926.977*9.48] inserted 1316 events, including 2 inversions
[minigraph]: [M::mg_index::60985.328*9.47] indexed the graph
[minigraph]: [M::mg_opt_update::60989.990*9.47] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::60997.889*9.47] loaded file "HG03453.2.fa"
1 jobs are running, 0 jobs are issued and waiting to run
[minigraph]: [M::ggen_map::61927.753*9.50] mapped 439 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s195273 and >s257682 derived from the 3-th query at 32439045-32439045
[minigraph]: [W::gfa_ins_filter] multi-link between <s111168 and <s111167 derived from the 51-th query at 11220843-11220843
[minigraph]: [W::gfa_ins_filter] multi-link between >s183990 and >s300228 derived from the 63-th query at 8777909-8777909
[minigraph]: [W::gfa_ins_filter] multi-link between <s251907 and >s286784 derived from the 109-th query at 3683215-3683215
[minigraph]: [W::gfa_ins_filter] multi-link between >s258015 and >s301321 derived from the 117-th query at 1746-1746
[minigraph]: [W::gfa_ins_filter] multi-link between <s164843 and <s164842 derived from the 139-th query at 5620719-5620719
[minigraph]: [W::gfa_ins_filter] multi-link between <s349505 and <s349503 derived from the 157-th query at 2142521-2142521
[minigraph]: [W::gfa_ins_filter] multi-link between <s289525 and <s289524 derived from the 196-th query at 393156-393156
[minigraph]: [M::mg_ggsimple_cigar::61930.354*9.50] inserted 1128 events, including 0 inversions
[minigraph]: [M::mg_index::61988.627*9.49] indexed the graph
[minigraph]: [M::mg_opt_update::61993.148*9.49] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::62000.965*9.49] loaded file "NA18906.1.fa"
[minigraph]: [M::ggen_map::63744.841*9.39] mapped 304 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s67143 and >s67144 derived from the 5-th query at 392375-392375
[minigraph]: [W::gfa_ins_filter] multi-link between <s165730 and <s165729 derived from the 11-th query at 18363627-18363627
[minigraph]: [W::gfa_ins_filter] multi-link between <s160893 and <s160892 derived from the 15-th query at 3263739-3263739
[minigraph]: [W::gfa_ins_filter] multi-link between >s104972 and >s104974 derived from the 24-th query at 36036095-36036095
[minigraph]: [W::gfa_ins_filter] impossible insert between <s203792 and >s127279 derived from the 28-th query at 53532076-53532076
[minigraph]: [W::gfa_ins_filter] impossible insert between >s203792 and <s127279 derived from the 28-th query at 53544672-53544672
[minigraph]: [W::gfa_ins_filter] multi-link between <s351054 and <s351052 derived from the 36-th query at 31812546-31812546
[minigraph]: [W::gfa_ins_filter] multi-link between <s123515 and <s123514 derived from the 41-th query at 61601570-61601570
[minigraph]: [W::gfa_ins_filter] impossible insert between <s250540 and <s250540 derived from the 55-th query at 44133049-44133049
[minigraph]: [W::gfa_ins_filter] impossible insert between >s250540 and >s250540 derived from the 55-th query at 44136025-44136025
[minigraph]: [W::gfa_ins_filter] multi-link between <s156294 and <s156293 derived from the 63-th query at 17644809-17644809
[minigraph]: [W::gfa_ins_filter] impossible insert between >s273936 and >s74402 derived from the 67-th query at 15798991-15798991
[minigraph]: [W::gfa_ins_filter] multi-link between <s19364 and <s280738 derived from the 97-th query at 5867138-5867138
[minigraph]: [M::mg_ggsimple_cigar::63747.874*9.39] inserted 1158 events, including 4 inversions
[minigraph]: [M::mg_index::63806.069*9.38] indexed the graph
[minigraph]: [M::mg_opt_update::63810.679*9.38] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::63818.554*9.38] loaded file "HG03516.1.fa"
[minigraph]: [M::ggen_map::64371.192*9.45] mapped 369 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s67498 and >s67499 derived from the 1-th query at 392120-392120
[minigraph]: [W::gfa_ins_filter] multi-link between <s6088 and <s6087 derived from the 11-th query at 21593284-21593284
[minigraph]: [W::gfa_ins_filter] multi-link between >s105603 and >s105605 derived from the 30-th query at 62867923-62867923
[minigraph]: [W::gfa_ins_filter] multi-link between >s6760 and >s6761 derived from the 59-th query at 3533719-3533719
[minigraph]: [W::gfa_ins_filter] impossible insert between >s128041 and <s204899 derived from the 115-th query at 4767223-4767223
[minigraph]: [W::gfa_ins_filter] impossible insert between <s128041 and >s204899 derived from the 115-th query at 4779819-4779819
[minigraph]: [M::mg_ggsimple_cigar::64373.744*9.45] inserted 1010 events, including 1 inversions
[minigraph]: [M::mg_index::64432.105*9.44] indexed the graph
[minigraph]: [M::mg_opt_update::64436.592*9.44] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::64444.373*9.44] loaded file "HG02109.2.fa"
[minigraph]: [M::ggen_map::65101.070*9.49] mapped 445 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s124902 and <s124901 derived from the 2-th query at 7148150-7148150
[minigraph]: [W::gfa_ins_filter] multi-link between <s158325 and <s158323 derived from the 75-th query at 43176976-43176976
[minigraph]: [W::gfa_ins_filter] multi-link between <s158004 and <s158003 derived from the 75-th query at 48678431-48678431
[minigraph]: [W::gfa_ins_filter] multi-link between <s167535 and <s167534 derived from the 140-th query at 1887833-1887833
[minigraph]: [W::gfa_ins_filter] multi-link between >s123197 and >s123198 derived from the 172-th query at 13787612-13787612
[minigraph]: [W::gfa_ins_filter] multi-link between <s117935 and <s203626 derived from the 175-th query at 393167-393167
[minigraph]: [W::gfa_ins_filter] multi-link between <s195920 and >s281351 derived from the 185-th query at 340128-340128
[minigraph]: [W::gfa_ins_filter] multi-link between <s355570 and >s102007 derived from the 215-th query at 912190-912190
[minigraph]: [W::gfa_ins_filter] multi-link between >s293416 and <s322137 derived from the 238-th query at 3827513-3827513
[minigraph]: [M::mg_ggsimple_cigar::65103.859*9.48] inserted 990 events, including 0 inversions
[minigraph]: [M::mg_index::65162.196*9.48] indexed the graph
[minigraph]: [M::mg_opt_update::65166.664*9.48] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::65174.440*9.48] loaded file "NA18906.2.fa"
1 jobs are running, 0 jobs are issued and waiting to run
[minigraph]: [M::ggen_map::65939.409*9.51] mapped 271 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s125495 and <s342486 derived from the 9-th query at 32839420-32839420
[minigraph]: [W::gfa_ins_filter] multi-link between <s159712 and <s159708 derived from the 9-th query at 3568593-3568593
[minigraph]: [W::gfa_ins_filter] multi-link between >s130845 and >s130847 derived from the 11-th query at 51855102-51855102
[minigraph]: [W::gfa_ins_filter] multi-link between <s274804 and <s274802 derived from the 22-th query at 743695-743695
[minigraph]: [W::gfa_ins_filter] multi-link between >s153952 and >s153955 derived from the 36-th query at 8733704-8733704
[minigraph]: [W::gfa_ins_filter] multi-link between >s106673 and >s106675 derived from the 42-th query at 34269455-34269455
[minigraph]: [W::gfa_ins_filter] multi-link between <s168363 and <s168362 derived from the 60-th query at 5620850-5620850
[minigraph]: [W::gfa_ins_filter] multi-link between <s19674 and <s284382 derived from the 72-th query at 94538192-94538192
[minigraph]: [W::gfa_ins_filter] multi-link between >s89080 and >s89085 derived from the 99-th query at 14606029-14606029
[minigraph]: [W::gfa_ins_filter] multi-link between >s274242 and >s274243 derived from the 140-th query at 1605942-1605942
[minigraph]: [M::mg_ggsimple_cigar::65941.925*9.51] inserted 990 events, including 1 inversions
[minigraph]: [M::mg_index::66000.223*9.50] indexed the graph
[minigraph]: [M::mg_opt_update::66004.870*9.50] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::66012.671*9.50] loaded file "HG03516.2.fa"
[minigraph]: [M::ggen_map::66376.605*9.58] mapped 320 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s149840 and <s149837 derived from the 17-th query at 6552516-6552516
[minigraph]: [W::gfa_ins_filter] multi-link between <s107177 and >s364754 derived from the 59-th query at 26732942-26732942
[minigraph]: [W::gfa_ins_filter] multi-link between >s202593 and <s291408 derived from the 67-th query at 852499-852499
[minigraph]: [M::mg_ggsimple_cigar::66379.255*9.58] inserted 1031 events, including 1 inversions
[minigraph]: [M::mg_index::66437.522*9.58] indexed the graph
[minigraph]: [M::mg_opt_update::66442.204*9.58] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::66449.871*9.57] loaded file "HG02055.2.fa"
[minigraph]: [M::ggen_map::67805.254*9.52] mapped 306 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s107658 and >s107660 derived from the 0-th query at 63731408-63731408
[minigraph]: [W::gfa_ins_filter] multi-link between <s155439 and <s155436 derived from the 21-th query at 36597841-36597841
[minigraph]: [W::gfa_ins_filter] multi-link between <s14925 and <s14924 derived from the 36-th query at 33284851-33284851
[minigraph]: [W::gfa_ins_filter] multi-link between <s55200 and <s55199 derived from the 59-th query at 23592715-23592715
[minigraph]: [W::gfa_ins_filter] multi-link between >s264833 and >s308884 derived from the 68-th query at 34095181-34095181
[minigraph]: [W::gfa_ins_filter] multi-link between >s304848 and >s304851 derived from the 74-th query at 10857422-10857422
[minigraph]: [W::gfa_ins_filter] multi-link between <s359593 and >s103421 derived from the 117-th query at 927719-927719
[minigraph]: [W::gfa_ins_filter] multi-link between >s287232 and >s287235 derived from the 135-th query at 2139559-2139559
[minigraph]: [M::mg_ggsimple_cigar::67808.039*9.52] inserted 954 events, including 0 inversions
[minigraph]: [M::mg_index::67866.376*9.52] indexed the graph
[minigraph]: [M::mg_opt_update::67870.764*9.52] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::67878.587*9.52] loaded file "HG02109.1.fa"
[minigraph]: [M::ggen_map::68542.787*9.57] mapped 481 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between >s108115 and >s108117 derived from the 39-th query at 9479137-9479137
[minigraph]: [W::gfa_ins_filter] multi-link between <s170703 and <s170702 derived from the 43-th query at 5616070-5616070
[minigraph]: [W::gfa_ins_filter] multi-link between <s196162 and <s196159 derived from the 45-th query at 618712-618712
[minigraph]: [W::gfa_ins_filter] multi-link between >s297881 and <s326968 derived from the 82-th query at 3830857-3830857
[minigraph]: [W::gfa_ins_filter] multi-link between >s96681 and <s247310 derived from the 141-th query at 6170831-6170831
[minigraph]: [W::gfa_ins_filter] impossible insert between >s131105 and <s209535 derived from the 151-th query at 755353-755353
[minigraph]: [W::gfa_ins_filter] impossible insert between <s131105 and >s209535 derived from the 151-th query at 767945-767945
[minigraph]: [M::mg_ggsimple_cigar::68545.602*9.57] inserted 983 events, including 2 inversions
[minigraph]: [M::mg_index::68603.857*9.56] indexed the graph
[minigraph]: [M::mg_opt_update::68608.412*9.56] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::68616.026*9.56] loaded file "HG02055.1.fa"
1 jobs are running, 0 jobs are issued and waiting to run
[minigraph]: [M::ggen_map::69292.979*9.61] mapped 367 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s108561 and >s368902 derived from the 16-th query at 55743415-55743415
[minigraph]: [W::gfa_ins_filter] multi-link between <s20081 and <s288752 derived from the 27-th query at 35884405-35884405
[minigraph]: [W::gfa_ins_filter] multi-link between <s14243 and <s245124 derived from the 32-th query at 5335497-5335497
[minigraph]: [W::gfa_ins_filter] multi-link between <s171486 and <s171485 derived from the 108-th query at 17337094-17337094
[minigraph]: [M::mg_ggsimple_cigar::69295.403*9.61] inserted 888 events, including 0 inversions
[minigraph]: [M::mg_index::69353.781*9.60] indexed the graph
[minigraph]: [M::mg_opt_update::69358.579*9.60] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::69366.489*9.60] loaded file "HG03540.1.fa"
[minigraph]: [M::ggen_map::70312.586*9.61] mapped 512 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s209344 and <s320278 derived from the 26-th query at 13217201-13217201
[minigraph]: [W::gfa_ins_filter] multi-link between >s361928 and >s361929 derived from the 27-th query at 3777504-3777504
[minigraph]: [W::gfa_ins_filter] multi-link between <s17812 and >s289153 derived from the 35-th query at 1267494-1267494
[minigraph]: [W::gfa_ins_filter] multi-link between <s269952 and <s269951 derived from the 38-th query at 290910-290910
[minigraph]: [W::gfa_ins_filter] multi-link between <s109123 and >s370183 derived from the 75-th query at 9616289-9616289
[minigraph]: [W::gfa_ins_filter] multi-link between >s210780 and <s306509 derived from the 86-th query at 2923397-2923397
[minigraph]: [W::gfa_ins_filter] impossible insert between <s211318 and >s132298 derived from the 92-th query at 53933199-53933199
[minigraph]: [W::gfa_ins_filter] impossible insert between >s211318 and <s132298 derived from the 92-th query at 53945795-53945795
[minigraph]: [W::gfa_ins_filter] multi-link between <s167253 and <s167252 derived from the 101-th query at 4575522-4575522
[minigraph]: [W::gfa_ins_filter] multi-link between <s300079 and <s300078 derived from the 107-th query at 403559-403559
[minigraph]: [W::gfa_ins_filter] multi-link between >s172281 and <s357539 derived from the 132-th query at 10611511-10611511
[minigraph]: [M::mg_ggsimple_cigar::70315.176*9.60] inserted 802 events, including 2 inversions
[minigraph]: [M::mg_index::70373.524*9.60] indexed the graph
[minigraph]: [M::mg_opt_update::70378.233*9.60] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::70386.083*9.60] loaded file "NA20129.2.fa"
[minigraph]: [M::ggen_map::71011.970*9.64] mapped 448 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s186142 and <s186139 derived from the 11-th query at 70759424-70759424
[minigraph]: [W::gfa_ins_filter] multi-link between <s56479 and <s56477 derived from the 62-th query at 16620696-16620696
[minigraph]: [W::gfa_ins_filter] impossible insert between <s259919 and >s259917 derived from the 77-th query at 42060218-42060218
[minigraph]: [W::gfa_ins_filter] impossible insert between >s259919 and <s259917 derived from the 77-th query at 42063195-42063195
[minigraph]: [W::gfa_ins_filter] impossible insert between <s259905 and <s259905 derived from the 77-th query at 42208036-42208036
[minigraph]: [W::gfa_ins_filter] impossible insert between >s259905 and >s259905 derived from the 77-th query at 42211013-42211013
[minigraph]: [W::gfa_ins_filter] multi-link between <s75123 and <s75122 derived from the 84-th query at 5311751-5311751
[minigraph]: [W::gfa_ins_filter] multi-link between <s109549 and >s371310 derived from the 88-th query at 9618359-9618359
[minigraph]: [W::gfa_ins_filter] multi-link between <s172963 and <s172962 derived from the 164-th query at 5618965-5618965
[minigraph]: [W::gfa_ins_filter] multi-link between <s167896 and <s167895 derived from the 203-th query at 37728-37728
[minigraph]: [W::gfa_ins_filter] multi-link between <s164093 and <s164089 derived from the 203-th query at 1473553-1473553
[minigraph]: [M::mg_ggsimple_cigar::71015.219*9.64] inserted 843 events, including 2 inversions
[minigraph]: [M::mg_index::71073.758*9.63] indexed the graph
[minigraph]: [M::mg_opt_update::71078.298*9.63] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::71086.151*9.63] loaded file "HG03540.2.fa"
[minigraph]: [M::ggen_map::72230.447*9.62] mapped 435 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s202677 and >s289661 derived from the 17-th query at 1701004-1701004
[minigraph]: [W::gfa_ins_filter] multi-link between <s368253 and <s136275 derived from the 20-th query at 12988262-12988262
[minigraph]: [W::gfa_ins_filter] multi-link between <s109986 and >s372448 derived from the 45-th query at 9621251-9621251
[minigraph]: [W::gfa_ins_filter] multi-link between >s173596 and <s359684 derived from the 94-th query at 10457166-10457166
[minigraph]: [W::gfa_ins_filter] multi-link between <s365650 and >s105649 derived from the 153-th query at 916356-916356
[minigraph]: [M::mg_ggsimple_cigar::72233.032*9.62] inserted 899 events, including 0 inversions
[minigraph]: [M::mg_index::72291.521*9.61] indexed the graph
[minigraph]: [M::mg_opt_update::72296.082*9.61] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::72303.859*9.61] loaded file "NA20129.1.fa"
1 jobs are running, 0 jobs are issued and waiting to run
[minigraph]: [M::ggen_map::73563.967*9.58] mapped 481 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s203481 and >s290646 derived from the 20-th query at 1688772-1688772
[minigraph]: [W::gfa_ins_filter] multi-link between <s72146 and <s72145 derived from the 83-th query at 32559006-32559006
[minigraph]: [W::gfa_ins_filter] multi-link between >s24194 and <s229411 derived from the 102-th query at 31296405-31296405
[minigraph]: [W::gfa_ins_filter] multi-link between <s113075 and <s113072 derived from the 110-th query at 6887676-6887676
[minigraph]: [W::gfa_ins_filter] multi-link between <s16141 and <s16138 derived from the 130-th query at 16978923-16978923
[minigraph]: [W::gfa_ins_filter] multi-link between >s310673 and >s145976 derived from the 159-th query at 4313631-4313631
[minigraph]: [W::gfa_ins_filter] multi-link between <s214112 and <s214107 derived from the 172-th query at 567440-567440
[minigraph]: [M::mg_ggsimple_cigar::73566.888*9.58] inserted 860 events, including 0 inversions
[minigraph]: [M::mg_index::73625.341*9.57] indexed the graph
[minigraph]: [M::mg_opt_update::73629.968*9.57] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::73637.675*9.57] loaded file "HG02818.1.fa"
[minigraph]: [M::ggen_map::74323.316*9.60] mapped 566 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s110900 and >s374813 derived from the 6-th query at 9624699-9624699
[minigraph]: [W::gfa_ins_filter] multi-link between >s131510 and >s131511 derived from the 23-th query at 23823407-23823407
[minigraph]: [W::gfa_ins_filter] multi-link between <s174964 and <s174963 derived from the 43-th query at 5619069-5619069
[minigraph]: [W::gfa_ins_filter] multi-link between >s135818 and <s274606 derived from the 57-th query at 29996069-29996069
[minigraph]: [W::gfa_ins_filter] multi-link between >s73467 and >s73468 derived from the 181-th query at 548-548
[minigraph]: [W::gfa_ins_filter] multi-link between <s256025 and <s256024 derived from the 183-th query at 8521239-8521239
[minigraph]: [W::gfa_ins_filter] multi-link between >s308820 and >s308822 derived from the 185-th query at 1330353-1330353
[minigraph]: [W::gfa_ins_filter] impossible insert between >s134420 and <s214404 derived from the 198-th query at 3514069-3514069
[minigraph]: [W::gfa_ins_filter] impossible insert between <s134420 and >s214404 derived from the 198-th query at 3526651-3526651
[minigraph]: [M::mg_ggsimple_cigar::74326.439*9.60] inserted 898 events, including 2 inversions
[minigraph]: [M::mg_index::74384.930*9.60] indexed the graph
[minigraph]: [M::mg_opt_update::74389.557*9.60] occ_max1=100; lc_max_occ=2
[minigraph]: [M::ggen_map::74397.357*9.60] loaded file "HG02818.2.fa"
[minigraph]: [M::ggen_map::75123.782*9.62] mapped 620 sequence(s) to the graph
[minigraph]: [W::gfa_ins_filter] multi-link between <s6419 and <s6418 derived from the 9-th query at 29213895-29213895
[minigraph]: [W::gfa_ins_filter] multi-link between <s111378 and >s376072 derived from the 21-th query at 9646513-9646513
[minigraph]: [W::gfa_ins_filter] multi-link between >s213248 and >s213249 derived from the 52-th query at 2575879-2575879
[minigraph]: [W::gfa_ins_filter] multi-link between <s165722 and <s165721 derived from the 113-th query at 10910846-10910846
[minigraph]: [M::mg_ggsimple_cigar::75126.554*9.62] inserted 827 events, including 1 inversions
[minigraph]: [M::main] Version: 0.20-r559
[minigraph]: [M::main] CMD: minigraph -c -xggs -t 64 GRCh38.fa CHM13.fa HG01952.2.fa HG01952.1.fa HG01106.2.fa HG01358.2.fa HG01106.1.fa HG01358.1.fa HG01361.2.fa HG01361.1.fa HG01978.2.fa HG01978.1.fa HG01928.2.fa HG01258.2.fa HG00621.2.fa HG01109.2.fa HG01109.1.fa HG01258.1.fa HG00621.1.fa HG01928.1.fa HG02080.2.fa HG02080.1.fa HG03579.2.fa HG03579.1.fa HG00741.2.fa HG03492.2.fa HG00741.1.fa HG02145.2.fa HG02145.1.fa HG03492.1.fa HG01071.1.fa HG01071.2.fa HG00673.2.fa HG00733.2.fa HG00733.1.fa HG02572.2.fa HG00673.1.fa HG02572.1.fa HG00735.1.fa HG02257.1.fa HG02148.2.fa HG01123.1.fa HG02148.1.fa HG01123.2.fa HG02486.2.fa HG00735.2.fa HG01243.2.fa HG01891.2.fa HG02257.2.fa HG01891.1.fa HG01243.1.fa HG02486.1.fa HG01175.2.fa HG01175.1.fa HG03098.2.fa HG03098.1.fa HG00438.2.fa HG00438.1.fa HG02886.2.fa HG02886.1.fa HG02723.2.fa HG02559.1.fa HG02622.2.fa HG02717.2.fa HG02559.2.fa HG02723.1.fa HG02622.1.fa HG02717.1.fa HG02630.2.fa HG03486.2.fa HG02630.1.fa HG03486.1.fa HG03453.1.fa NA21309.2.fa NA21309.1.fa HG03453.2.fa NA18906.1.fa HG03516.1.fa HG02109.2.fa NA18906.2.fa HG03516.2.fa HG02055.2.fa HG02109.1.fa HG02055.1.fa HG03540.1.fa NA20129.2.fa HG03540.2.fa NA20129.1.fa HG02818.1.fa HG02818.2.fa
[minigraph]: [M::main] Real time: 75132.243 sec; CPU: 722917.089 sec; Peak RSS: 100.076 GB
2023-07-05 11:48:13.678189: Successfully ran [minigraph]: "bash -c 'set -eo pipefail && minigraph -c -xggs -t 64 GRCh38.fa CHM13.fa HG01952.2.fa HG01952.1.fa HG01106.2.fa HG01358.2.fa HG01106.1.fa HG01358.1.fa HG01361.2.fa HG01361.1.fa HG01978.2.fa HG01978.1.fa HG01928.2.fa HG01258.2.fa HG00621.2.fa HG01109.2.fa HG01109.1.fa HG01258.1.fa HG00621.1.fa HG01928.1.fa HG02080.2.fa HG02080.1.fa HG03579.2.fa HG03579.1.fa HG00741.2.fa HG03492.2.fa HG00741.1.fa HG02145.2.fa HG02145.1.fa HG03492.1.fa HG01071.1.fa HG01071.2.fa HG00673.2.fa HG00733.2.fa HG00733.1.fa HG02572.2.fa HG00673.1.fa HG02572.1.fa HG00735.1.fa HG02257.1.fa HG02148.2.fa HG01123.1.fa HG02148.1.fa HG01123.2.fa HG02486.2.fa HG00735.2.fa HG01243.2.fa HG01891.2.fa HG02257.2.fa HG01891.1.fa HG01243.1.fa HG02486.1.fa HG01175.2.fa HG01175.1.fa HG03098.2.fa HG03098.1.fa HG00438.2.fa HG00438.1.fa HG02886.2.fa HG02886.1.fa HG02723.2.fa HG02559.1.fa HG02622.2.fa HG02717.2.fa HG02559.2.fa HG02723.1.fa HG02622.1.fa HG02717.1.fa HG02630.2.fa HG03486.2.fa HG02630.1.fa HG03486.1.fa HG03453.1.fa NA21309.2.fa NA21309.1.fa HG03453.2.fa NA18906.1.fa HG03516.1.fa HG02109.2.fa NA18906.2.fa HG03516.2.fa HG02055.2.fa HG02109.1.fa HG02055.1.fa HG03540.1.fa NA20129.2.fa HG03540.2.fa NA20129.1.fa HG02818.1.fa HG02818.2.fa | bgzip --threads 64'" in 75134.0823 seconds and 100.1 Gi memory with job-memory 238.4 Gi. Percent utilization: 41.97
Issued job 'minigraph_workflow' kind-minigraph_workflow/instance-7vv9wioa v1 with job batch system ID: 141 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_minigraph_wrapper' kind-export_minigraph_wrapper/instance-xlr6fynp v1 with job batch system ID: 142 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'unzip_gz' kind-unzip_gz/instance-itefogzo v1 with job batch system ID: 143 and disk: 3.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'make_minigraph_fasta' kind-make_minigraph_fasta/instance-vy73216x v1 with job batch system ID: 144 and disk: 7.3 Gi, memory: 7.3 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 11:48:56.149609: Running the command: "gzip -fd hprc-v1.1-mc-grch38.sv.gfa.gz"
2023-07-05 11:48:56.408970: Running the command: "bash -c set -eo pipefail && gfatools gfa2fa /data/tmp/9eeeec3d467250f1999ba98b3759d207/0c9a/5051/tmp0j7qa0kg/mg.gfa | sed -e 's/^>\(.\)/>id=_MINIGRAPH_|\1/g' | bgzip --threads 1"
2023-07-05 11:49:18.238006: Successfully ran: "gzip -fd hprc-v1.1-mc-grch38.sv.gfa.gz" in 22.0872 seconds and 1.8 Mi memory
2023-07-05 11:52:00.916858: Successfully ran: "bash -c 'set -eo pipefail && gfatools gfa2fa /data/tmp/9eeeec3d467250f1999ba98b3759d207/0c9a/5051/tmp0j7qa0kg/mg.gfa | sed -e '"'"'s/^>\(.\)/>id=_MINIGRAPH_|\1/g'"'"' | bgzip --threads 1'" in 184.507 seconds and 3.2 Gi memory
Issued job 'minigraph_map_all' kind-minigraph_map_all/instance-ax7z79v3 v1 with job batch system ID: 145 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-ihtnepwm v1 with job batch system ID: 146 and disk: 17.3 Gi, memory: 185.0 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-g6eti_m0 v1 with job batch system ID: 147 and disk: 16.8 Gi, memory: 179.2 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-p_5d0icx v1 with job batch system ID: 148 and disk: 17.3 Gi, memory: 185.9 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-frydyzpt v1 with job batch system ID: 149 and disk: 17.3 Gi, memory: 186.2 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-1qp7_o7u v1 with job batch system ID: 150 and disk: 17.3 Gi, memory: 185.0 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-cgqj9icw v1 with job batch system ID: 151 and disk: 17.2 Gi, memory: 184.8 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-oprkrqea v1 with job batch system ID: 152 and disk: 16.8 Gi, memory: 179.0 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-kyav9rhc v1 with job batch system ID: 153 and disk: 16.7 Gi, memory: 178.0 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-lto5xhut v1 with job batch system ID: 154 and disk: 17.4 Gi, memory: 186.3 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-tlpv1is9 v1 with job batch system ID: 155 and disk: 17.3 Gi, memory: 185.4 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-o_lpcxmv v1 with job batch system ID: 156 and disk: 17.4 Gi, memory: 186.9 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-rx0_l_z5 v1 with job batch system ID: 157 and disk: 17.3 Gi, memory: 185.8 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-ftss1oks v1 with job batch system ID: 158 and disk: 17.3 Gi, memory: 185.7 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-62uaf1jp v1 with job batch system ID: 159 and disk: 17.4 Gi, memory: 187.0 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-vcx24ixp v1 with job batch system ID: 160 and disk: 17.2 Gi, memory: 184.4 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-ag0rvqdw v1 with job batch system ID: 161 and disk: 17.3 Gi, memory: 185.5 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-idecp8nh v1 with job batch system ID: 162 and disk: 17.3 Gi, memory: 186.2 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-vpmi3xei v1 with job batch system ID: 163 and disk: 17.3 Gi, memory: 185.2 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-2chegntp v1 with job batch system ID: 164 and disk: 17.3 Gi, memory: 185.7 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-vwu1hrlm v1 with job batch system ID: 165 and disk: 17.2 Gi, memory: 184.8 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-drfqsuv3 v1 with job batch system ID: 166 and disk: 17.3 Gi, memory: 185.4 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-bhntumip v1 with job batch system ID: 167 and disk: 17.3 Gi, memory: 185.5 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-wi4p415j v1 with job batch system ID: 168 and disk: 17.3 Gi, memory: 185.4 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-aokzmlxk v1 with job batch system ID: 169 and disk: 17.3 Gi, memory: 185.8 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-0t6dqbi2 v1 with job batch system ID: 170 and disk: 17.7 Gi, memory: 190.4 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-myh_qhov v1 with job batch system ID: 171 and disk: 17.3 Gi, memory: 185.2 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-1ahwk4yr v1 with job batch system ID: 172 and disk: 17.3 Gi, memory: 185.1 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-31pqzmqi v1 with job batch system ID: 173 and disk: 16.9 Gi, memory: 180.6 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-aoz31t2w v1 with job batch system ID: 174 and disk: 17.3 Gi, memory: 185.4 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-pdmzq16b v1 with job batch system ID: 175 and disk: 17.3 Gi, memory: 185.8 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-fwebkh6h v1 with job batch system ID: 176 and disk: 17.4 Gi, memory: 187.2 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-wdkvk8z9 v1 with job batch system ID: 177 and disk: 17.4 Gi, memory: 186.4 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-fw2laro5 v1 with job batch system ID: 178 and disk: 17.5 Gi, memory: 187.6 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-dn9ihwah v1 with job batch system ID: 179 and disk: 17.3 Gi, memory: 186.2 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-dmu678o3 v1 with job batch system ID: 180 and disk: 17.4 Gi, memory: 187.0 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-f4w5kzbp v1 with job batch system ID: 181 and disk: 17.4 Gi, memory: 186.8 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-feo31xll v1 with job batch system ID: 182 and disk: 16.7 Gi, memory: 178.4 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-i4armxb8 v1 with job batch system ID: 183 and disk: 17.3 Gi, memory: 185.2 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-zozpzqip v1 with job batch system ID: 184 and disk: 16.9 Gi, memory: 180.5 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-texdto8e v1 with job batch system ID: 185 and disk: 17.4 Gi, memory: 186.6 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-o4lfjuqz v1 with job batch system ID: 186 and disk: 17.3 Gi, memory: 185.6 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-2dhyceet v1 with job batch system ID: 187 and disk: 17.4 Gi, memory: 186.5 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-_xv5l2p_ v1 with job batch system ID: 188 and disk: 17.4 Gi, memory: 186.6 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-4__u3107 v1 with job batch system ID: 189 and disk: 17.4 Gi, memory: 186.8 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-ie8xxbp9 v1 with job batch system ID: 190 and disk: 17.3 Gi, memory: 185.8 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-bmculcp5 v1 with job batch system ID: 191 and disk: 17.3 Gi, memory: 185.6 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-0ubp7i__ v1 with job batch system ID: 192 and disk: 17.3 Gi, memory: 185.1 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-5q30bl5q v1 with job batch system ID: 193 and disk: 17.3 Gi, memory: 185.5 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-d0m8brng v1 with job batch system ID: 194 and disk: 16.9 Gi, memory: 179.9 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-9mzfoynz v1 with job batch system ID: 195 and disk: 17.6 Gi, memory: 189.7 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-0iexioh_ v1 with job batch system ID: 196 and disk: 17.2 Gi, memory: 184.9 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-c0thdo9z v1 with job batch system ID: 197 and disk: 17.4 Gi, memory: 186.4 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-4_wisfqv v1 with job batch system ID: 198 and disk: 17.3 Gi, memory: 185.2 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-s2lym4il v1 with job batch system ID: 199 and disk: 17.3 Gi, memory: 185.4 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-sz1uxshs v1 with job batch system ID: 200 and disk: 17.4 Gi, memory: 187.0 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-77gfw1bf v1 with job batch system ID: 201 and disk: 16.7 Gi, memory: 178.5 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-mvbc9otg v1 with job batch system ID: 202 and disk: 16.7 Gi, memory: 178.1 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-x786nw5x v1 with job batch system ID: 203 and disk: 17.3 Gi, memory: 185.9 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-rbiiv41o v1 with job batch system ID: 204 and disk: 16.8 Gi, memory: 179.6 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-dxy_x0zj v1 with job batch system ID: 205 and disk: 17.3 Gi, memory: 185.3 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-85j1u5ry v1 with job batch system ID: 206 and disk: 17.2 Gi, memory: 184.5 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-10k8ipzs v1 with job batch system ID: 207 and disk: 17.4 Gi, memory: 187.1 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-o0ctgim4 v1 with job batch system ID: 208 and disk: 17.4 Gi, memory: 186.7 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-mw90n4zz v1 with job batch system ID: 209 and disk: 16.8 Gi, memory: 179.5 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-wztj4rcg v1 with job batch system ID: 210 and disk: 17.3 Gi, memory: 185.1 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-umg98sgm v1 with job batch system ID: 211 and disk: 16.9 Gi, memory: 180.2 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-vt_3drot v1 with job batch system ID: 212 and disk: 17.5 Gi, memory: 187.7 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-qzi3glu_ v1 with job batch system ID: 213 and disk: 16.8 Gi, memory: 179.8 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-7o_mtt70 v1 with job batch system ID: 214 and disk: 16.8 Gi, memory: 178.9 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-2itsmo49 v1 with job batch system ID: 215 and disk: 17.3 Gi, memory: 185.4 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-q3f3syje v1 with job batch system ID: 216 and disk: 17.3 Gi, memory: 185.8 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-oltgssrs v1 with job batch system ID: 217 and disk: 17.3 Gi, memory: 185.9 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-ytu82kcv v1 with job batch system ID: 218 and disk: 16.8 Gi, memory: 179.0 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-j5k2ieke v1 with job batch system ID: 219 and disk: 17.3 Gi, memory: 186.1 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-i4p0xca3 v1 with job batch system ID: 220 and disk: 17.3 Gi, memory: 186.3 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-h3ooxr4n v1 with job batch system ID: 221 and disk: 17.2 Gi, memory: 184.4 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-76ezjc_t v1 with job batch system ID: 222 and disk: 17.3 Gi, memory: 185.8 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-iklrhyhv v1 with job batch system ID: 223 and disk: 17.3 Gi, memory: 185.8 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-8bv5f205 v1 with job batch system ID: 224 and disk: 17.3 Gi, memory: 185.9 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-9fbrzf7d v1 with job batch system ID: 225 and disk: 17.3 Gi, memory: 185.5 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-wuuscc8w v1 with job batch system ID: 226 and disk: 17.3 Gi, memory: 186.2 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-6qn5v2sk v1 with job batch system ID: 227 and disk: 17.3 Gi, memory: 185.1 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-zoowus3v v1 with job batch system ID: 228 and disk: 17.3 Gi, memory: 185.2 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-t3eb1c4_ v1 with job batch system ID: 229 and disk: 16.8 Gi, memory: 179.2 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-jl_nqlcn v1 with job batch system ID: 230 and disk: 17.2 Gi, memory: 184.2 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-3bxk8_bu v1 with job batch system ID: 231 and disk: 17.3 Gi, memory: 185.7 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-lu6ab84p v1 with job batch system ID: 232 and disk: 17.4 Gi, memory: 186.6 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-_vul3kcu v1 with job batch system ID: 233 and disk: 17.4 Gi, memory: 186.5 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-uuk6qowq v1 with job batch system ID: 234 and disk: 17.4 Gi, memory: 186.6 Gi, cores: 16, accelerators: [], preemptible: False
Issued job 'minigraph_map_one' kind-minigraph_map_one/instance-kd62dnln v1 with job batch system ID: 235 and disk: 16.9 Gi, memory: 180.4 Gi, cores: 16, accelerators: [], preemptible: False
2023-07-05 11:53:53.036205: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/e80d/1dc5/tmp15vduwy7/mg.gfa /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/e80d/1dc5/tmp15vduwy7/HG02717.1.fa -o /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/e80d/1dc5/tmp15vduwy7/HG02717.1.gaf -c -xasm -t 16"
2023-07-05 11:53:53.692770: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/3f3a/6bc9/tmpnzyi653y/mg.gfa /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/3f3a/6bc9/tmpnzyi653y/HG02886.2.fa -o /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/3f3a/6bc9/tmpnzyi653y/HG02886.2.gaf -c -xasm -t 16"
2023-07-05 11:55:24.083794: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/e41d97042ffa55f1a1fc324d5464836c/881f/68c5/tmpb1ymb9gx/mg.gfa /data/tmp/e41d97042ffa55f1a1fc324d5464836c/881f/68c5/tmpb1ymb9gx/HG01109.1.fa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/881f/68c5/tmpb1ymb9gx/HG01109.1.gaf -c -xasm -t 16"
2023-07-05 11:55:25.989019: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/e41d97042ffa55f1a1fc324d5464836c/cf1d/b254/tmp82okq5wk/mg.gfa /data/tmp/e41d97042ffa55f1a1fc324d5464836c/cf1d/b254/tmp82okq5wk/HG03098.1.fa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/cf1d/b254/tmp82okq5wk/HG03098.1.gaf -c -xasm -t 16"
2023-07-05 11:55:26.239140: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/e41d97042ffa55f1a1fc324d5464836c/867a/e769/tmpiwnv5pc5/mg.gfa /data/tmp/e41d97042ffa55f1a1fc324d5464836c/867a/e769/tmpiwnv5pc5/HG02572.1.fa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/867a/e769/tmpiwnv5pc5/HG02572.1.gaf -c -xasm -t 16"
2023-07-05 11:55:27.343839: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0dfb/d410/tmp88yl77c_/mg.gfa /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0dfb/d410/tmp88yl77c_/NA21309.1.fa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0dfb/d410/tmp88yl77c_/NA21309.1.gaf -c -xasm -t 16"
2023-07-05 11:55:27.413517: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b63c/4682/tmp5_0m3zfe/mg.gfa /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b63c/4682/tmp5_0m3zfe/NA21309.2.fa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b63c/4682/tmp5_0m3zfe/NA21309.2.gaf -c -xasm -t 16"
2023-07-05 11:55:27.508659: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/e41d97042ffa55f1a1fc324d5464836c/f77b/9be5/tmpxmi8up7t/mg.gfa /data/tmp/e41d97042ffa55f1a1fc324d5464836c/f77b/9be5/tmpxmi8up7t/HG02717.2.fa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/f77b/9be5/tmpxmi8up7t/HG02717.2.gaf -c -xasm -t 16"
2023-07-05 11:55:27.675667: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/dd85/86f1/tmpocvyho2k/mg.gfa /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/dd85/86f1/tmpocvyho2k/HG01071.2.fa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/dd85/86f1/tmpocvyho2k/HG01071.2.gaf -c -xasm -t 16"
2023-07-05 11:55:28.418296: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/e41d97042ffa55f1a1fc324d5464836c/3784/f170/tmphpbq4u25/mg.gfa /data/tmp/e41d97042ffa55f1a1fc324d5464836c/3784/f170/tmphpbq4u25/HG03492.2.fa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/3784/f170/tmphpbq4u25/HG03492.2.gaf -c -xasm -t 16"
2023-07-05 11:55:28.433840: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7143/9813/tmpvsw5b4sw/mg.gfa /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7143/9813/tmpvsw5b4sw/HG03516.2.fa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7143/9813/tmpvsw5b4sw/HG03516.2.gaf -c -xasm -t 16"
2023-07-05 11:55:28.886343: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8f2b/0d1e/tmp8eg6x5pk/mg.gfa /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8f2b/0d1e/tmp8eg6x5pk/HG02257.2.fa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8f2b/0d1e/tmp8eg6x5pk/HG02257.2.gaf -c -xasm -t 16"
2023-07-05 11:55:29.005583: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b046/f2f9/tmpdbzlffif/mg.gfa /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b046/f2f9/tmpdbzlffif/HG03516.1.fa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b046/f2f9/tmpdbzlffif/HG03516.1.gaf -c -xasm -t 16"
2023-07-05 11:55:29.309621: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1b59/c27e/tmpfpf8xt70/mg.gfa /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1b59/c27e/tmpfpf8xt70/HG01978.1.fa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1b59/c27e/tmpfpf8xt70/HG01978.1.gaf -c -xasm -t 16"
2023-07-05 11:55:29.983968: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cb35/9ab6/tmp02dn21tx/mg.gfa /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cb35/9ab6/tmp02dn21tx/NA20129.2.fa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cb35/9ab6/tmp02dn21tx/NA20129.2.gaf -c -xasm -t 16"
2023-07-05 11:55:30.179150: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/44cb/344e/tmpan5_11rq/mg.gfa /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/44cb/344e/tmpan5_11rq/HG01175.1.fa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/44cb/344e/tmpan5_11rq/HG01175.1.gaf -c -xasm -t 16"
2023-07-05 11:55:30.346313: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f3b9/04f3/tmpy8w039w3/mg.gfa /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f3b9/04f3/tmpy8w039w3/HG00673.2.fa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f3b9/04f3/tmpy8w039w3/HG00673.2.gaf -c -xasm -t 16"
2023-07-05 11:55:34.035512: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c231/98b8/tmpptsh7l9b/mg.gfa /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c231/98b8/tmpptsh7l9b/HG01109.2.fa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c231/98b8/tmpptsh7l9b/HG01109.2.gaf -c -xasm -t 16"
2023-07-05 11:56:22.306520: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1bf2/6e1c/tmpwtfm9vrz/mg.gfa /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1bf2/6e1c/tmpwtfm9vrz/HG01358.2.fa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1bf2/6e1c/tmpwtfm9vrz/HG01358.2.gaf -c -xasm -t 16"
2023-07-05 11:56:22.409148: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/becf/0dc4/tmpp66xeicy/mg.gfa /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/becf/0dc4/tmpp66xeicy/HG01243.2.fa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/becf/0dc4/tmpp66xeicy/HG01243.2.gaf -c -xasm -t 16"
2023-07-05 11:56:22.507525: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ccbe/5214/tmpqiznk47v/mg.gfa /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ccbe/5214/tmpqiznk47v/HG02145.2.fa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ccbe/5214/tmpqiznk47v/HG02145.2.gaf -c -xasm -t 16"
2023-07-05 11:56:22.590278: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/daf9/8401/tmpweme7ygt/mg.gfa /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/daf9/8401/tmpweme7ygt/HG01106.2.fa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/daf9/8401/tmpweme7ygt/HG01106.2.gaf -c -xasm -t 16"
2023-07-05 11:56:23.031802: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9416/2bb0/tmptvwr5kln/mg.gfa /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9416/2bb0/tmptvwr5kln/HG02818.1.fa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9416/2bb0/tmptvwr5kln/HG02818.1.gaf -c -xasm -t 16"
2023-07-05 11:56:23.156807: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/303f/16e3/tmpqb27odkg/mg.gfa /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/303f/16e3/tmpqb27odkg/HG00733.2.fa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/303f/16e3/tmpqb27odkg/HG00733.2.gaf -c -xasm -t 16"
2023-07-05 11:56:23.218843: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac33/7b9f/tmp8pmb2ff8/mg.gfa /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac33/7b9f/tmp8pmb2ff8/HG03486.2.fa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac33/7b9f/tmp8pmb2ff8/HG03486.2.gaf -c -xasm -t 16"
2023-07-05 11:56:23.257149: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a834/1c4e/tmpzbi_fzdd/mg.gfa /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a834/1c4e/tmpzbi_fzdd/HG00733.1.fa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a834/1c4e/tmpzbi_fzdd/HG00733.1.gaf -c -xasm -t 16"
2023-07-05 11:56:44.924548: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/9eeeec3d467250f1999ba98b3759d207/85c5/1aa7/tmp1nxrvp46/mg.gfa /data/tmp/9eeeec3d467250f1999ba98b3759d207/85c5/1aa7/tmp1nxrvp46/HG00621.1.fa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/85c5/1aa7/tmp1nxrvp46/HG00621.1.gaf -c -xasm -t 16"
2023-07-05 11:56:45.545389: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/9eeeec3d467250f1999ba98b3759d207/b2ef/244c/tmped4mq6m2/mg.gfa /data/tmp/9eeeec3d467250f1999ba98b3759d207/b2ef/244c/tmped4mq6m2/HG01928.1.fa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/b2ef/244c/tmped4mq6m2/HG01928.1.gaf -c -xasm -t 16"
2023-07-05 11:56:46.511072: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/9eeeec3d467250f1999ba98b3759d207/ffbd/b78d/tmpmkzq5wz3/mg.gfa /data/tmp/9eeeec3d467250f1999ba98b3759d207/ffbd/b78d/tmpmkzq5wz3/HG00673.1.fa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/ffbd/b78d/tmpmkzq5wz3/HG00673.1.gaf -c -xasm -t 16"
2023-07-05 11:56:48.287699: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/9eeeec3d467250f1999ba98b3759d207/d16a/f2dd/tmpqduen2gs/mg.gfa /data/tmp/9eeeec3d467250f1999ba98b3759d207/d16a/f2dd/tmpqduen2gs/HG02055.2.fa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/d16a/f2dd/tmpqduen2gs/HG02055.2.gaf -c -xasm -t 16"
2023-07-05 11:56:48.366111: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/9eeeec3d467250f1999ba98b3759d207/556e/7872/tmp3w38ph01/mg.gfa /data/tmp/9eeeec3d467250f1999ba98b3759d207/556e/7872/tmp3w38ph01/HG01891.2.fa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/556e/7872/tmp3w38ph01/HG01891.2.gaf -c -xasm -t 16"
2023-07-05 11:56:48.826884: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/9eeeec3d467250f1999ba98b3759d207/e03b/7701/tmplhpi3crq/mg.gfa /data/tmp/9eeeec3d467250f1999ba98b3759d207/e03b/7701/tmplhpi3crq/HG00621.2.fa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/e03b/7701/tmplhpi3crq/HG00621.2.gaf -c -xasm -t 16"
2023-07-05 11:56:48.996193: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/9eeeec3d467250f1999ba98b3759d207/ef5c/783b/tmpiqma3t6y/mg.gfa /data/tmp/9eeeec3d467250f1999ba98b3759d207/ef5c/783b/tmpiqma3t6y/HG02818.2.fa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/ef5c/783b/tmpiqma3t6y/HG02818.2.gaf -c -xasm -t 16"
2023-07-05 11:56:49.008074: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/9eeeec3d467250f1999ba98b3759d207/0960/5fdf/tmpbq3hsi9h/mg.gfa /data/tmp/9eeeec3d467250f1999ba98b3759d207/0960/5fdf/tmpbq3hsi9h/HG01891.1.fa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/0960/5fdf/tmpbq3hsi9h/HG01891.1.gaf -c -xasm -t 16"
2023-07-05 11:56:49.171616: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/2a95a9ee729755068515bad92da082de/924b/5c54/tmpl1f6atu0/mg.gfa /data/tmp/2a95a9ee729755068515bad92da082de/924b/5c54/tmpl1f6atu0/HG02055.1.fa -o /data/tmp/2a95a9ee729755068515bad92da082de/924b/5c54/tmpl1f6atu0/HG02055.1.gaf -c -xasm -t 16"
2023-07-05 11:56:49.493639: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/27bafead6d355b998e86173ec3f6a1a4/fb4e/1495/tmp88321w7q/mg.gfa /data/tmp/27bafead6d355b998e86173ec3f6a1a4/fb4e/1495/tmp88321w7q/HG03492.1.fa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/fb4e/1495/tmp88321w7q/HG03492.1.gaf -c -xasm -t 16"
2023-07-05 11:56:50.668955: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c484/8bc5/tmpflyi7wi1/mg.gfa /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c484/8bc5/tmpflyi7wi1/HG01106.1.fa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c484/8bc5/tmpflyi7wi1/HG01106.1.gaf -c -xasm -t 16"
2023-07-05 11:56:51.238147: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/27bafead6d355b998e86173ec3f6a1a4/523d/fa4e/tmpr3bccbes/mg.gfa /data/tmp/27bafead6d355b998e86173ec3f6a1a4/523d/fa4e/tmpr3bccbes/HG01123.2.fa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/523d/fa4e/tmpr3bccbes/HG01123.2.gaf -c -xasm -t 16"
2023-07-05 11:56:51.815603: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/2a95a9ee729755068515bad92da082de/ab10/15ef/tmp81olk0rg/mg.gfa /data/tmp/2a95a9ee729755068515bad92da082de/ab10/15ef/tmp81olk0rg/HG02559.1.fa -o /data/tmp/2a95a9ee729755068515bad92da082de/ab10/15ef/tmp81olk0rg/HG02559.1.gaf -c -xasm -t 16"
2023-07-05 11:56:51.904511: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/2a95a9ee729755068515bad92da082de/7d32/ea1f/tmpxuq7d50m/mg.gfa /data/tmp/2a95a9ee729755068515bad92da082de/7d32/ea1f/tmpxuq7d50m/HG01928.2.fa -o /data/tmp/2a95a9ee729755068515bad92da082de/7d32/ea1f/tmpxuq7d50m/HG01928.2.gaf -c -xasm -t 16"
2023-07-05 11:56:52.017001: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/27bafead6d355b998e86173ec3f6a1a4/1462/f0d5/tmpz33ehxck/mg.gfa /data/tmp/27bafead6d355b998e86173ec3f6a1a4/1462/f0d5/tmpz33ehxck/HG02559.2.fa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/1462/f0d5/tmpz33ehxck/HG02559.2.gaf -c -xasm -t 16"
2023-07-05 11:56:52.095717: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8052/d4b8/tmpdzvjim0n/mg.gfa /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8052/d4b8/tmpdzvjim0n/HG02622.1.fa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8052/d4b8/tmpdzvjim0n/HG02622.1.gaf -c -xasm -t 16"
2023-07-05 11:56:52.134216: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/2a95a9ee729755068515bad92da082de/24bd/cec6/tmp9q9n_vwl/mg.gfa /data/tmp/2a95a9ee729755068515bad92da082de/24bd/cec6/tmp9q9n_vwl/NA20129.1.fa -o /data/tmp/2a95a9ee729755068515bad92da082de/24bd/cec6/tmp9q9n_vwl/NA20129.1.gaf -c -xasm -t 16"
2023-07-05 11:56:52.138418: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/27bafead6d355b998e86173ec3f6a1a4/9012/a272/tmpyhhcbidl/mg.gfa /data/tmp/27bafead6d355b998e86173ec3f6a1a4/9012/a272/tmpyhhcbidl/HG01175.2.fa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/9012/a272/tmpyhhcbidl/HG01175.2.gaf -c -xasm -t 16"
2023-07-05 11:56:52.238227: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/27bafead6d355b998e86173ec3f6a1a4/698b/ec96/tmpj7umzgzn/mg.gfa /data/tmp/27bafead6d355b998e86173ec3f6a1a4/698b/ec96/tmpj7umzgzn/HG03579.2.fa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/698b/ec96/tmpj7umzgzn/HG03579.2.gaf -c -xasm -t 16"
2023-07-05 11:56:52.254687: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/2a95a9ee729755068515bad92da082de/12de/0843/tmppi9pcpm9/mg.gfa /data/tmp/2a95a9ee729755068515bad92da082de/12de/0843/tmppi9pcpm9/HG00741.2.fa -o /data/tmp/2a95a9ee729755068515bad92da082de/12de/0843/tmppi9pcpm9/HG00741.2.gaf -c -xasm -t 16"
2023-07-05 11:56:52.358101: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/27bafead6d355b998e86173ec3f6a1a4/da9d/dbc3/tmp7kj02h4b/mg.gfa /data/tmp/27bafead6d355b998e86173ec3f6a1a4/da9d/dbc3/tmp7kj02h4b/HG00735.2.fa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/da9d/dbc3/tmp7kj02h4b/HG00735.2.gaf -c -xasm -t 16"
2023-07-05 11:56:52.359106: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/27bafead6d355b998e86173ec3f6a1a4/07d5/ad6b/tmp7ht2u2te/mg.gfa /data/tmp/27bafead6d355b998e86173ec3f6a1a4/07d5/ad6b/tmp7ht2u2te/HG02148.2.fa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/07d5/ad6b/tmp7ht2u2te/HG02148.2.gaf -c -xasm -t 16"
2023-07-05 11:56:52.370442: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/2a95a9ee729755068515bad92da082de/4761/3430/tmpn_fvklkk/mg.gfa /data/tmp/2a95a9ee729755068515bad92da082de/4761/3430/tmpn_fvklkk/NA18906.1.fa -o /data/tmp/2a95a9ee729755068515bad92da082de/4761/3430/tmpn_fvklkk/NA18906.1.gaf -c -xasm -t 16"
2023-07-05 11:56:52.471546: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/2a95a9ee729755068515bad92da082de/c96a/98de/tmpx3oywv9r/mg.gfa /data/tmp/2a95a9ee729755068515bad92da082de/c96a/98de/tmpx3oywv9r/HG03098.2.fa -o /data/tmp/2a95a9ee729755068515bad92da082de/c96a/98de/tmpx3oywv9r/HG03098.2.gaf -c -xasm -t 16"
2023-07-05 11:56:52.659558: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/2a95a9ee729755068515bad92da082de/e351/d4be/tmp6u43gyvv/mg.gfa /data/tmp/2a95a9ee729755068515bad92da082de/e351/d4be/tmp6u43gyvv/CHM13.fa -o /data/tmp/2a95a9ee729755068515bad92da082de/e351/d4be/tmp6u43gyvv/CHM13.gaf -c -xasm -t 16"
2023-07-05 11:56:52.955838: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6bec/5aa6/tmps5k3b6m7/mg.gfa /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6bec/5aa6/tmps5k3b6m7/HG01361.1.fa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6bec/5aa6/tmps5k3b6m7/HG01361.1.gaf -c -xasm -t 16"
2023-07-05 11:56:53.051854: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6d8b/0a6b/tmpoi061gk4/mg.gfa /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6d8b/0a6b/tmpoi061gk4/HG02080.1.fa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6d8b/0a6b/tmpoi061gk4/HG02080.1.gaf -c -xasm -t 16"
2023-07-05 11:56:53.070065: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/f627/f887/tmpir28j30g/mg.gfa /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/f627/f887/tmpir28j30g/HG02148.1.fa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/f627/f887/tmpir28j30g/HG02148.1.gaf -c -xasm -t 16"
2023-07-05 11:56:53.188250: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c6e2/73fd/tmpjt93hdgf/mg.gfa /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c6e2/73fd/tmpjt93hdgf/HG00735.1.fa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c6e2/73fd/tmpjt93hdgf/HG00735.1.gaf -c -xasm -t 16"
2023-07-05 11:56:53.190389: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/167a/bf83/tmptwygt555/mg.gfa /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/167a/bf83/tmptwygt555/HG02257.1.fa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/167a/bf83/tmptwygt555/HG02257.1.gaf -c -xasm -t 16"
2023-07-05 11:56:53.242219: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c261/df8b/tmpujjkp7ic/mg.gfa /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c261/df8b/tmpujjkp7ic/HG03453.2.fa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c261/df8b/tmpujjkp7ic/HG03453.2.gaf -c -xasm -t 16"
2023-07-05 11:56:53.243745: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/93b0/4766/tmpu8lhhcy8/mg.gfa /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/93b0/4766/tmpu8lhhcy8/HG03486.1.fa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/93b0/4766/tmpu8lhhcy8/HG03486.1.gaf -c -xasm -t 16"
2023-07-05 11:57:36.786027: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/66df/33db/tmpdfp_yotz/mg.gfa /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/66df/33db/tmpdfp_yotz/HG01952.1.fa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/66df/33db/tmpdfp_yotz/HG01952.1.gaf -c -xasm -t 16"
2023-07-05 11:57:37.523234: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/35a5/1a75/tmpeppz6jrn/mg.gfa /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/35a5/1a75/tmpeppz6jrn/HG03579.1.fa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/35a5/1a75/tmpeppz6jrn/HG03579.1.gaf -c -xasm -t 16"
2023-07-05 11:57:38.615798: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/0a9f88a4b0315a71bc09997943db6609/40b2/1c72/tmpsfrna0nj/mg.gfa /data/tmp/0a9f88a4b0315a71bc09997943db6609/40b2/1c72/tmpsfrna0nj/HG01243.1.fa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/40b2/1c72/tmpsfrna0nj/HG01243.1.gaf -c -xasm -t 16"
2023-07-05 11:57:38.837693: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/9fd0f61929a456269b41669e7d9612f5/c954/2915/tmptej1dwnd/mg.gfa /data/tmp/9fd0f61929a456269b41669e7d9612f5/c954/2915/tmptej1dwnd/HG01258.1.fa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/c954/2915/tmptej1dwnd/HG01258.1.gaf -c -xasm -t 16"
2023-07-05 11:57:39.199001: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/0a9f88a4b0315a71bc09997943db6609/4fa2/0cea/tmp6j0x900_/mg.gfa /data/tmp/0a9f88a4b0315a71bc09997943db6609/4fa2/0cea/tmp6j0x900_/HG01358.1.fa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/4fa2/0cea/tmp6j0x900_/HG01358.1.gaf -c -xasm -t 16"
2023-07-05 11:57:39.225564: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f397/ac8d/tmp4a_42sa7/mg.gfa /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f397/ac8d/tmp4a_42sa7/HG02109.2.fa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f397/ac8d/tmp4a_42sa7/HG02109.2.gaf -c -xasm -t 16"
2023-07-05 11:57:39.246237: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/0a9f88a4b0315a71bc09997943db6609/1681/cb51/tmpbvrirabm/mg.gfa /data/tmp/0a9f88a4b0315a71bc09997943db6609/1681/cb51/tmpbvrirabm/HG02486.1.fa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/1681/cb51/tmpbvrirabm/HG02486.1.gaf -c -xasm -t 16"
2023-07-05 11:57:39.324401: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/9fd0f61929a456269b41669e7d9612f5/acdf/f4dc/tmph19ri1tp/mg.gfa /data/tmp/9fd0f61929a456269b41669e7d9612f5/acdf/f4dc/tmph19ri1tp/HG02145.1.fa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/acdf/f4dc/tmph19ri1tp/HG02145.1.gaf -c -xasm -t 16"
2023-07-05 11:57:39.728174: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e90b/6a1d/tmpe01ar9qi/mg.gfa /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e90b/6a1d/tmpe01ar9qi/HG03540.2.fa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e90b/6a1d/tmpe01ar9qi/HG03540.2.gaf -c -xasm -t 16"
2023-07-05 11:57:39.944737: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4bc3/a745/tmpwsvvk2f3/mg.gfa /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4bc3/a745/tmpwsvvk2f3/HG02630.2.fa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4bc3/a745/tmpwsvvk2f3/HG02630.2.gaf -c -xasm -t 16"
2023-07-05 11:57:40.064432: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2755/6a72/tmphbw4o4gd/mg.gfa /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2755/6a72/tmphbw4o4gd/HG02630.1.fa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2755/6a72/tmphbw4o4gd/HG02630.1.gaf -c -xasm -t 16"
2023-07-05 11:57:40.079855: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f790/e5df/tmp4c617ow1/mg.gfa /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f790/e5df/tmp4c617ow1/NA18906.2.fa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f790/e5df/tmp4c617ow1/NA18906.2.gaf -c -xasm -t 16"
2023-07-05 11:57:40.113652: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2aeb/9219/tmpb520cubo/mg.gfa /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2aeb/9219/tmpb520cubo/HG03540.1.fa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2aeb/9219/tmpb520cubo/HG03540.1.gaf -c -xasm -t 16"
2023-07-05 11:57:40.562881: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/0a9f88a4b0315a71bc09997943db6609/ab24/fe63/tmp9gyf1ewt/mg.gfa /data/tmp/0a9f88a4b0315a71bc09997943db6609/ab24/fe63/tmp9gyf1ewt/HG01123.1.fa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/ab24/fe63/tmp9gyf1ewt/HG01123.1.gaf -c -xasm -t 16"
2023-07-05 11:57:40.654262: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/0a9f88a4b0315a71bc09997943db6609/5aad/cae8/tmphszo3vfh/mg.gfa /data/tmp/0a9f88a4b0315a71bc09997943db6609/5aad/cae8/tmphszo3vfh/HG02723.2.fa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/5aad/cae8/tmphszo3vfh/HG02723.2.gaf -c -xasm -t 16"
2023-07-05 11:57:40.738528: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/0a9f88a4b0315a71bc09997943db6609/630b/efa4/tmp4hqs8pnp/mg.gfa /data/tmp/0a9f88a4b0315a71bc09997943db6609/630b/efa4/tmp4hqs8pnp/HG02109.1.fa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/630b/efa4/tmp4hqs8pnp/HG02109.1.gaf -c -xasm -t 16"
2023-07-05 11:57:40.804948: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/9fd0f61929a456269b41669e7d9612f5/8309/4622/tmp82s_6rut/mg.gfa /data/tmp/9fd0f61929a456269b41669e7d9612f5/8309/4622/tmp82s_6rut/HG01952.2.fa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/8309/4622/tmp82s_6rut/HG01952.2.gaf -c -xasm -t 16"
2023-07-05 11:57:40.817357: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/0a9f88a4b0315a71bc09997943db6609/7aee/ec61/tmpcf4q32nt/mg.gfa /data/tmp/0a9f88a4b0315a71bc09997943db6609/7aee/ec61/tmpcf4q32nt/HG03453.1.fa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/7aee/ec61/tmpcf4q32nt/HG03453.1.gaf -c -xasm -t 16"
2023-07-05 11:57:40.850680: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/0a9f88a4b0315a71bc09997943db6609/d353/8bbb/tmpctzcfpl7/mg.gfa /data/tmp/0a9f88a4b0315a71bc09997943db6609/d353/8bbb/tmpctzcfpl7/HG01071.1.fa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/d353/8bbb/tmpctzcfpl7/HG01071.1.gaf -c -xasm -t 16"
2023-07-05 11:57:40.899956: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/9fd0f61929a456269b41669e7d9612f5/7c97/4b14/tmp6zzhrstz/mg.gfa /data/tmp/9fd0f61929a456269b41669e7d9612f5/7c97/4b14/tmp6zzhrstz/HG01361.2.fa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/7c97/4b14/tmp6zzhrstz/HG01361.2.gaf -c -xasm -t 16"
2023-07-05 11:57:40.925033: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/9fd0f61929a456269b41669e7d9612f5/842c/27ed/tmpra1ye_vp/mg.gfa /data/tmp/9fd0f61929a456269b41669e7d9612f5/842c/27ed/tmpra1ye_vp/HG00741.1.fa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/842c/27ed/tmpra1ye_vp/HG00741.1.gaf -c -xasm -t 16"
2023-07-05 11:57:40.993982: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/9fd0f61929a456269b41669e7d9612f5/b551/ef41/tmpfeop8eew/mg.gfa /data/tmp/9fd0f61929a456269b41669e7d9612f5/b551/ef41/tmpfeop8eew/HG02622.2.fa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/b551/ef41/tmpfeop8eew/HG02622.2.gaf -c -xasm -t 16"
2023-07-05 11:57:41.034914: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/9fd0f61929a456269b41669e7d9612f5/ecf6/ee04/tmp4z8_ddj2/mg.gfa /data/tmp/9fd0f61929a456269b41669e7d9612f5/ecf6/ee04/tmp4z8_ddj2/HG02572.2.fa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/ecf6/ee04/tmp4z8_ddj2/HG02572.2.gaf -c -xasm -t 16"
2023-07-05 11:57:41.183161: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/9fd0f61929a456269b41669e7d9612f5/b19e/a195/tmpfqfhi4jo/mg.gfa /data/tmp/9fd0f61929a456269b41669e7d9612f5/b19e/a195/tmpfqfhi4jo/GRCh38.fa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/b19e/a195/tmpfqfhi4jo/GRCh38.gaf -c -xasm -t 16"
2023-07-05 11:57:41.517541: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/fb6bb230be1f50648d9c685404953bb7/8657/51e9/tmpsvevghqd/mg.gfa /data/tmp/fb6bb230be1f50648d9c685404953bb7/8657/51e9/tmpsvevghqd/HG00438.1.fa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/8657/51e9/tmpsvevghqd/HG00438.1.gaf -c -xasm -t 16"
2023-07-05 11:57:41.541395: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/fb6bb230be1f50648d9c685404953bb7/22c0/ae21/tmp1imglqto/mg.gfa /data/tmp/fb6bb230be1f50648d9c685404953bb7/22c0/ae21/tmp1imglqto/HG02080.2.fa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/22c0/ae21/tmp1imglqto/HG02080.2.gaf -c -xasm -t 16"
2023-07-05 11:57:41.575407: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/fb6bb230be1f50648d9c685404953bb7/2d4c/bca7/tmp1cklsx9t/mg.gfa /data/tmp/fb6bb230be1f50648d9c685404953bb7/2d4c/bca7/tmp1cklsx9t/HG01258.2.fa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/2d4c/bca7/tmp1cklsx9t/HG01258.2.gaf -c -xasm -t 16"
2023-07-05 11:57:41.576593: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/fb6bb230be1f50648d9c685404953bb7/2a4c/e527/tmpo5qmhoiy/mg.gfa /data/tmp/fb6bb230be1f50648d9c685404953bb7/2a4c/e527/tmpo5qmhoiy/HG02486.2.fa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/2a4c/e527/tmpo5qmhoiy/HG02486.2.gaf -c -xasm -t 16"
2023-07-05 11:57:41.591214: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/fb6bb230be1f50648d9c685404953bb7/0924/01df/tmpdcz1cfr2/mg.gfa /data/tmp/fb6bb230be1f50648d9c685404953bb7/0924/01df/tmpdcz1cfr2/HG00438.2.fa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/0924/01df/tmpdcz1cfr2/HG00438.2.gaf -c -xasm -t 16"
2023-07-05 11:57:41.607846: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/fb6bb230be1f50648d9c685404953bb7/8cda/553c/tmp8stv89vs/mg.gfa /data/tmp/fb6bb230be1f50648d9c685404953bb7/8cda/553c/tmp8stv89vs/HG02886.1.fa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/8cda/553c/tmp8stv89vs/HG02886.1.gaf -c -xasm -t 16"
2023-07-05 11:57:41.612888: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/fb6bb230be1f50648d9c685404953bb7/757b/6d39/tmpl1sgv74v/mg.gfa /data/tmp/fb6bb230be1f50648d9c685404953bb7/757b/6d39/tmpl1sgv74v/HG02723.1.fa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/757b/6d39/tmpl1sgv74v/HG02723.1.gaf -c -xasm -t 16"
2023-07-05 11:57:41.619533: Running the command: "bash -c set -eo pipefail && minigraph /data/tmp/fb6bb230be1f50648d9c685404953bb7/46d7/c588/tmpwjc352rf/mg.gfa /data/tmp/fb6bb230be1f50648d9c685404953bb7/46d7/c588/tmpwjc352rf/HG01978.2.fa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/46d7/c588/tmpwjc352rf/HG01978.2.gaf -c -xasm -t 16"
90 jobs are running, 0 jobs are issued and waiting to run
2023-07-05 12:08:02.013479: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/9fd0f61929a456269b41669e7d9612f5/b19e/a195/tmpfqfhi4jo/mg.gfa /data/tmp/9fd0f61929a456269b41669e7d9612f5/b19e/a195/tmpfqfhi4jo/GRCh38.fa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/b19e/a195/tmpfqfhi4jo/GRCh38.gaf -c -xasm -t 16'" in 620.8282 seconds and 87.3 Gi memory with job-memory 189.7 Gi. Percent utilization: 46.06
2023-07-05 12:08:02.014353: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/9fd0f61929a456269b41669e7d9612f5/b19e/a195/tmpfqfhi4jo/GRCh38.gaf -g /data/tmp/9fd0f61929a456269b41669e7d9612f5/b19e/a195/tmpfqfhi4jo/mg.gfa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/b19e/a195/tmpfqfhi4jo/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:08:22.543576: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7143/9813/tmpvsw5b4sw/mg.gfa /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7143/9813/tmpvsw5b4sw/HG03516.2.fa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7143/9813/tmpvsw5b4sw/HG03516.2.gaf -c -xasm -t 16'" in 774.1071 seconds and 48.2 Gi memory with job-memory 185.7 Gi. Percent utilization: 25.96
2023-07-05 12:08:22.544464: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7143/9813/tmpvsw5b4sw/HG03516.2.gaf -g /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7143/9813/tmpvsw5b4sw/mg.gfa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7143/9813/tmpvsw5b4sw/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:08:28.317767: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/9fd0f61929a456269b41669e7d9612f5/b19e/a195/tmpfqfhi4jo/GRCh38.gaf -g /data/tmp/9fd0f61929a456269b41669e7d9612f5/b19e/a195/tmpfqfhi4jo/mg.gfa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/b19e/a195/tmpfqfhi4jo/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 26.3022 seconds and 3.2 Gi memory with job-memory 189.7 Gi. Percent utilization: 1.663
2023-07-05 12:08:28.318344: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/9fd0f61929a456269b41669e7d9612f5/b19e/a195/tmpfqfhi4jo/GRCh38.gaf.unstable -l /data/tmp/9fd0f61929a456269b41669e7d9612f5/b19e/a195/tmpfqfhi4jo/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:08:29.026171: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/9fd0f61929a456269b41669e7d9612f5/b19e/a195/tmpfqfhi4jo/GRCh38.gaf.unstable -l /data/tmp/9fd0f61929a456269b41669e7d9612f5/b19e/a195/tmpfqfhi4jo/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 0.7066 seconds and 32.3 Mi memory with job-memory 189.7 Gi. Percent utilization: 0.01664
2023-07-05 12:08:47.444828: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7143/9813/tmpvsw5b4sw/HG03516.2.gaf -g /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7143/9813/tmpvsw5b4sw/mg.gfa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7143/9813/tmpvsw5b4sw/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.8991 seconds and 3.2 Gi memory with job-memory 185.7 Gi. Percent utilization: 1.699
2023-07-05 12:08:47.445448: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7143/9813/tmpvsw5b4sw/HG03516.2.gaf.unstable -l /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7143/9813/tmpvsw5b4sw/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:08:50.169308: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7143/9813/tmpvsw5b4sw/HG03516.2.gaf.unstable -l /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7143/9813/tmpvsw5b4sw/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.7227 seconds and 46.0 Mi memory with job-memory 185.7 Gi. Percent utilization: 0.02421
2023-07-05 12:09:51.949748: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/e41d97042ffa55f1a1fc324d5464836c/3784/f170/tmphpbq4u25/mg.gfa /data/tmp/e41d97042ffa55f1a1fc324d5464836c/3784/f170/tmphpbq4u25/HG03492.2.fa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/3784/f170/tmphpbq4u25/HG03492.2.gaf -c -xasm -t 16'" in 863.5296 seconds and 40.7 Gi memory with job-memory 185.1 Gi. Percent utilization: 22.01
2023-07-05 12:09:51.950535: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/e41d97042ffa55f1a1fc324d5464836c/3784/f170/tmphpbq4u25/HG03492.2.gaf -g /data/tmp/e41d97042ffa55f1a1fc324d5464836c/3784/f170/tmphpbq4u25/mg.gfa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/3784/f170/tmphpbq4u25/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:10:16.289410: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/e41d97042ffa55f1a1fc324d5464836c/3784/f170/tmphpbq4u25/HG03492.2.gaf -g /data/tmp/e41d97042ffa55f1a1fc324d5464836c/3784/f170/tmphpbq4u25/mg.gfa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/3784/f170/tmphpbq4u25/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.3376 seconds and 3.2 Gi memory with job-memory 185.1 Gi. Percent utilization: 1.704
2023-07-05 12:10:16.289998: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/e41d97042ffa55f1a1fc324d5464836c/3784/f170/tmphpbq4u25/HG03492.2.gaf.unstable -l /data/tmp/e41d97042ffa55f1a1fc324d5464836c/3784/f170/tmphpbq4u25/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:10:18.645761: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/e41d97042ffa55f1a1fc324d5464836c/3784/f170/tmphpbq4u25/HG03492.2.gaf.unstable -l /data/tmp/e41d97042ffa55f1a1fc324d5464836c/3784/f170/tmphpbq4u25/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.3546 seconds and 39.6 Mi memory with job-memory 185.1 Gi. Percent utilization: 0.02089
2023-07-05 12:10:20.707279: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/3f3a/6bc9/tmpnzyi653y/mg.gfa /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/3f3a/6bc9/tmpnzyi653y/HG02886.2.fa -o /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/3f3a/6bc9/tmpnzyi653y/HG02886.2.gaf -c -xasm -t 16'" in 987.0128 seconds and 43.4 Gi memory with job-memory 186.6 Gi. Percent utilization: 23.26
2023-07-05 12:10:20.708108: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/3f3a/6bc9/tmpnzyi653y/HG02886.2.gaf -g /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/3f3a/6bc9/tmpnzyi653y/mg.gfa -o /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/3f3a/6bc9/tmpnzyi653y/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:10:21.618768: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/44cb/344e/tmpan5_11rq/mg.gfa /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/44cb/344e/tmpan5_11rq/HG01175.1.fa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/44cb/344e/tmpan5_11rq/HG01175.1.gaf -c -xasm -t 16'" in 891.4379 seconds and 44.8 Gi memory with job-memory 185.4 Gi. Percent utilization: 24.15
2023-07-05 12:10:21.619444: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/44cb/344e/tmpan5_11rq/HG01175.1.gaf -g /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/44cb/344e/tmpan5_11rq/mg.gfa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/44cb/344e/tmpan5_11rq/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:10:23.437147: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/167a/bf83/tmptwygt555/mg.gfa /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/167a/bf83/tmptwygt555/HG02257.1.fa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/167a/bf83/tmptwygt555/HG02257.1.gaf -c -xasm -t 16'" in 810.2451 seconds and 51.5 Gi memory with job-memory 186.2 Gi. Percent utilization: 27.65
2023-07-05 12:10:23.437940: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/167a/bf83/tmptwygt555/HG02257.1.gaf -g /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/167a/bf83/tmptwygt555/mg.gfa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/167a/bf83/tmptwygt555/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:10:28.754285: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0dfb/d410/tmp88yl77c_/mg.gfa /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0dfb/d410/tmp88yl77c_/NA21309.1.fa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0dfb/d410/tmp88yl77c_/NA21309.1.gaf -c -xasm -t 16'" in 901.4083 seconds and 38.2 Gi memory with job-memory 185.4 Gi. Percent utilization: 20.59
2023-07-05 12:10:28.755001: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0dfb/d410/tmp88yl77c_/NA21309.1.gaf -g /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0dfb/d410/tmp88yl77c_/mg.gfa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0dfb/d410/tmp88yl77c_/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:10:44.902128: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/3f3a/6bc9/tmpnzyi653y/HG02886.2.gaf -g /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/3f3a/6bc9/tmpnzyi653y/mg.gfa -o /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/3f3a/6bc9/tmpnzyi653y/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.193 seconds and 3.2 Gi memory with job-memory 186.6 Gi. Percent utilization: 1.69
2023-07-05 12:10:44.902690: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/3f3a/6bc9/tmpnzyi653y/HG02886.2.gaf.unstable -l /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/3f3a/6bc9/tmpnzyi653y/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:10:46.528566: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/44cb/344e/tmpan5_11rq/HG01175.1.gaf -g /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/44cb/344e/tmpan5_11rq/mg.gfa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/44cb/344e/tmpan5_11rq/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.9079 seconds and 3.2 Gi memory with job-memory 185.4 Gi. Percent utilization: 1.701
2023-07-05 12:10:46.529117: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/44cb/344e/tmpan5_11rq/HG01175.1.gaf.unstable -l /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/44cb/344e/tmpan5_11rq/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:10:47.667875: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/3f3a/6bc9/tmpnzyi653y/HG02886.2.gaf.unstable -l /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/3f3a/6bc9/tmpnzyi653y/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.7641 seconds and 45.0 Mi memory with job-memory 186.6 Gi. Percent utilization: 0.02355
2023-07-05 12:10:48.557022: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/167a/bf83/tmptwygt555/HG02257.1.gaf -g /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/167a/bf83/tmptwygt555/mg.gfa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/167a/bf83/tmptwygt555/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 25.1178 seconds and 3.2 Gi memory with job-memory 186.2 Gi. Percent utilization: 1.694
2023-07-05 12:10:48.557558: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/167a/bf83/tmptwygt555/HG02257.1.gaf.unstable -l /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/167a/bf83/tmptwygt555/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:10:49.013205: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/44cb/344e/tmpan5_11rq/HG01175.1.gaf.unstable -l /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/44cb/344e/tmpan5_11rq/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.483 seconds and 43.6 Mi memory with job-memory 185.4 Gi. Percent utilization: 0.02294
2023-07-05 12:10:51.359118: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/167a/bf83/tmptwygt555/HG02257.1.gaf.unstable -l /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/167a/bf83/tmptwygt555/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.8004 seconds and 48.6 Mi memory with job-memory 186.2 Gi. Percent utilization: 0.02547
2023-07-05 12:10:53.289151: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0dfb/d410/tmp88yl77c_/NA21309.1.gaf -g /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0dfb/d410/tmp88yl77c_/mg.gfa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0dfb/d410/tmp88yl77c_/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.5329 seconds and 3.2 Gi memory with job-memory 185.4 Gi. Percent utilization: 1.701
2023-07-05 12:10:53.289704: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0dfb/d410/tmp88yl77c_/NA21309.1.gaf.unstable -l /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0dfb/d410/tmp88yl77c_/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:10:55.874506: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0dfb/d410/tmp88yl77c_/NA21309.1.gaf.unstable -l /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0dfb/d410/tmp88yl77c_/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.5837 seconds and 38.6 Mi memory with job-memory 185.4 Gi. Percent utilization: 0.02033
2023-07-05 12:11:22.042747: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b046/f2f9/tmpdbzlffif/mg.gfa /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b046/f2f9/tmpdbzlffif/HG03516.1.fa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b046/f2f9/tmpdbzlffif/HG03516.1.gaf -c -xasm -t 16'" in 953.0357 seconds and 52.3 Gi memory with job-memory 187.7 Gi. Percent utilization: 27.87
2023-07-05 12:11:22.043445: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b046/f2f9/tmpdbzlffif/HG03516.1.gaf -g /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b046/f2f9/tmpdbzlffif/mg.gfa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b046/f2f9/tmpdbzlffif/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:11:43.650817: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b046/f2f9/tmpdbzlffif/HG03516.1.gaf -g /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b046/f2f9/tmpdbzlffif/mg.gfa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b046/f2f9/tmpdbzlffif/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 21.6063 seconds and 3.2 Gi memory with job-memory 187.7 Gi. Percent utilization: 1.68
2023-07-05 12:11:43.651383: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b046/f2f9/tmpdbzlffif/HG03516.1.gaf.unstable -l /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b046/f2f9/tmpdbzlffif/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:11:46.626588: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b046/f2f9/tmpdbzlffif/HG03516.1.gaf.unstable -l /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b046/f2f9/tmpdbzlffif/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.9741 seconds and 52.0 Mi memory with job-memory 187.7 Gi. Percent utilization: 0.02707
2023-07-05 12:11:46.767242: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/93b0/4766/tmpu8lhhcy8/mg.gfa /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/93b0/4766/tmpu8lhhcy8/HG03486.1.fa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/93b0/4766/tmpu8lhhcy8/HG03486.1.gaf -c -xasm -t 16'" in 893.5218 seconds and 41.2 Gi memory with job-memory 186.6 Gi. Percent utilization: 22.08
2023-07-05 12:11:46.767968: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/93b0/4766/tmpu8lhhcy8/HG03486.1.gaf -g /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/93b0/4766/tmpu8lhhcy8/mg.gfa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/93b0/4766/tmpu8lhhcy8/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:11:51.990118: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/27bafead6d355b998e86173ec3f6a1a4/698b/ec96/tmpj7umzgzn/mg.gfa /data/tmp/27bafead6d355b998e86173ec3f6a1a4/698b/ec96/tmpj7umzgzn/HG03579.2.fa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/698b/ec96/tmpj7umzgzn/HG03579.2.gaf -c -xasm -t 16'" in 899.7497 seconds and 41.7 Gi memory with job-memory 185.8 Gi. Percent utilization: 22.46
2023-07-05 12:11:51.990909: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/27bafead6d355b998e86173ec3f6a1a4/698b/ec96/tmpj7umzgzn/HG03579.2.gaf -g /data/tmp/27bafead6d355b998e86173ec3f6a1a4/698b/ec96/tmpj7umzgzn/mg.gfa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/698b/ec96/tmpj7umzgzn/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:12:11.043885: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/93b0/4766/tmpu8lhhcy8/HG03486.1.gaf -g /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/93b0/4766/tmpu8lhhcy8/mg.gfa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/93b0/4766/tmpu8lhhcy8/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.2747 seconds and 3.2 Gi memory with job-memory 186.6 Gi. Percent utilization: 1.69
2023-07-05 12:12:11.044449: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/93b0/4766/tmpu8lhhcy8/HG03486.1.gaf.unstable -l /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/93b0/4766/tmpu8lhhcy8/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:12:13.823559: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/93b0/4766/tmpu8lhhcy8/HG03486.1.gaf.unstable -l /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/93b0/4766/tmpu8lhhcy8/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.778 seconds and 42.5 Mi memory with job-memory 186.6 Gi. Percent utilization: 0.02223
2023-07-05 12:12:16.783145: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/27bafead6d355b998e86173ec3f6a1a4/698b/ec96/tmpj7umzgzn/HG03579.2.gaf -g /data/tmp/27bafead6d355b998e86173ec3f6a1a4/698b/ec96/tmpj7umzgzn/mg.gfa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/698b/ec96/tmpj7umzgzn/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.791 seconds and 3.2 Gi memory with job-memory 185.8 Gi. Percent utilization: 1.698
2023-07-05 12:12:16.783716: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/27bafead6d355b998e86173ec3f6a1a4/698b/ec96/tmpj7umzgzn/HG03579.2.gaf.unstable -l /data/tmp/27bafead6d355b998e86173ec3f6a1a4/698b/ec96/tmpj7umzgzn/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:12:19.497693: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/27bafead6d355b998e86173ec3f6a1a4/698b/ec96/tmpj7umzgzn/HG03579.2.gaf.unstable -l /data/tmp/27bafead6d355b998e86173ec3f6a1a4/698b/ec96/tmpj7umzgzn/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.7128 seconds and 43.2 Mi memory with job-memory 185.8 Gi. Percent utilization: 0.02271
2023-07-05 12:12:20.197904: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/9eeeec3d467250f1999ba98b3759d207/ef5c/783b/tmpiqma3t6y/mg.gfa /data/tmp/9eeeec3d467250f1999ba98b3759d207/ef5c/783b/tmpiqma3t6y/HG02818.2.fa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/ef5c/783b/tmpiqma3t6y/HG02818.2.gaf -c -xasm -t 16'" in 931.1992 seconds and 39.4 Gi memory with job-memory 185.9 Gi. Percent utilization: 21.21
2023-07-05 12:12:20.198668: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/9eeeec3d467250f1999ba98b3759d207/ef5c/783b/tmpiqma3t6y/HG02818.2.gaf -g /data/tmp/9eeeec3d467250f1999ba98b3759d207/ef5c/783b/tmpiqma3t6y/mg.gfa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/ef5c/783b/tmpiqma3t6y/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:12:44.587753: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/9eeeec3d467250f1999ba98b3759d207/ef5c/783b/tmpiqma3t6y/HG02818.2.gaf -g /data/tmp/9eeeec3d467250f1999ba98b3759d207/ef5c/783b/tmpiqma3t6y/mg.gfa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/ef5c/783b/tmpiqma3t6y/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.388 seconds and 3.2 Gi memory with job-memory 185.9 Gi. Percent utilization: 1.697
2023-07-05 12:12:44.588275: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/9eeeec3d467250f1999ba98b3759d207/ef5c/783b/tmpiqma3t6y/HG02818.2.gaf.unstable -l /data/tmp/9eeeec3d467250f1999ba98b3759d207/ef5c/783b/tmpiqma3t6y/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:12:47.317264: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/9eeeec3d467250f1999ba98b3759d207/ef5c/783b/tmpiqma3t6y/HG02818.2.gaf.unstable -l /data/tmp/9eeeec3d467250f1999ba98b3759d207/ef5c/783b/tmpiqma3t6y/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.7279 seconds and 39.6 Mi memory with job-memory 185.9 Gi. Percent utilization: 0.02079
2023-07-05 12:12:55.288172: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/303f/16e3/tmpqb27odkg/mg.gfa /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/303f/16e3/tmpqb27odkg/HG00733.2.fa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/303f/16e3/tmpqb27odkg/HG00733.2.gaf -c -xasm -t 16'" in 992.1292 seconds and 42.0 Gi memory with job-memory 185.2 Gi. Percent utilization: 22.67
2023-07-05 12:12:55.289034: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/303f/16e3/tmpqb27odkg/HG00733.2.gaf -g /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/303f/16e3/tmpqb27odkg/mg.gfa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/303f/16e3/tmpqb27odkg/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:13:05.072375: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/0a9f88a4b0315a71bc09997943db6609/40b2/1c72/tmpsfrna0nj/mg.gfa /data/tmp/0a9f88a4b0315a71bc09997943db6609/40b2/1c72/tmpsfrna0nj/HG01243.1.fa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/40b2/1c72/tmpsfrna0nj/HG01243.1.gaf -c -xasm -t 16'" in 926.4541 seconds and 42.9 Gi memory with job-memory 178.1 Gi. Percent utilization: 24.11
2023-07-05 12:13:05.073106: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/0a9f88a4b0315a71bc09997943db6609/40b2/1c72/tmpsfrna0nj/HG01243.1.gaf -g /data/tmp/0a9f88a4b0315a71bc09997943db6609/40b2/1c72/tmpsfrna0nj/mg.gfa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/40b2/1c72/tmpsfrna0nj/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:13:08.469812: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/9fd0f61929a456269b41669e7d9612f5/acdf/f4dc/tmph19ri1tp/mg.gfa /data/tmp/9fd0f61929a456269b41669e7d9612f5/acdf/f4dc/tmph19ri1tp/HG02145.1.fa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/acdf/f4dc/tmph19ri1tp/HG02145.1.gaf -c -xasm -t 16'" in 929.1433 seconds and 40.2 Gi memory with job-memory 179.9 Gi. Percent utilization: 22.33
2023-07-05 12:13:08.470508: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/9fd0f61929a456269b41669e7d9612f5/acdf/f4dc/tmph19ri1tp/HG02145.1.gaf -g /data/tmp/9fd0f61929a456269b41669e7d9612f5/acdf/f4dc/tmph19ri1tp/mg.gfa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/acdf/f4dc/tmph19ri1tp/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:13:20.237499: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/303f/16e3/tmpqb27odkg/HG00733.2.gaf -g /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/303f/16e3/tmpqb27odkg/mg.gfa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/303f/16e3/tmpqb27odkg/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.9472 seconds and 3.2 Gi memory with job-memory 185.2 Gi. Percent utilization: 1.703
2023-07-05 12:13:20.238127: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/303f/16e3/tmpqb27odkg/HG00733.2.gaf.unstable -l /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/303f/16e3/tmpqb27odkg/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:13:22.685922: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/303f/16e3/tmpqb27odkg/HG00733.2.gaf.unstable -l /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/303f/16e3/tmpqb27odkg/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.4466 seconds and 42.4 Mi memory with job-memory 185.2 Gi. Percent utilization: 0.02236
2023-07-05 12:13:24.710900: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/e41d97042ffa55f1a1fc324d5464836c/881f/68c5/tmpb1ymb9gx/mg.gfa /data/tmp/e41d97042ffa55f1a1fc324d5464836c/881f/68c5/tmpb1ymb9gx/HG01109.1.fa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/881f/68c5/tmpb1ymb9gx/HG01109.1.gaf -c -xasm -t 16'" in 1080.625 seconds and 46.8 Gi memory with job-memory 178.9 Gi. Percent utilization: 26.14
2023-07-05 12:13:24.711596: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/e41d97042ffa55f1a1fc324d5464836c/881f/68c5/tmpb1ymb9gx/HG01109.1.gaf -g /data/tmp/e41d97042ffa55f1a1fc324d5464836c/881f/68c5/tmpb1ymb9gx/mg.gfa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/881f/68c5/tmpb1ymb9gx/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:13:29.330177: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/0a9f88a4b0315a71bc09997943db6609/40b2/1c72/tmpsfrna0nj/HG01243.1.gaf -g /data/tmp/0a9f88a4b0315a71bc09997943db6609/40b2/1c72/tmpsfrna0nj/mg.gfa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/40b2/1c72/tmpsfrna0nj/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.2559 seconds and 3.2 Gi memory with job-memory 178.1 Gi. Percent utilization: 1.77
2023-07-05 12:13:29.330727: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/0a9f88a4b0315a71bc09997943db6609/40b2/1c72/tmpsfrna0nj/HG01243.1.gaf.unstable -l /data/tmp/0a9f88a4b0315a71bc09997943db6609/40b2/1c72/tmpsfrna0nj/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:13:32.073831: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/0a9f88a4b0315a71bc09997943db6609/40b2/1c72/tmpsfrna0nj/HG01243.1.gaf.unstable -l /data/tmp/0a9f88a4b0315a71bc09997943db6609/40b2/1c72/tmpsfrna0nj/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.7419 seconds and 41.6 Mi memory with job-memory 178.1 Gi. Percent utilization: 0.02283
2023-07-05 12:13:33.074060: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/9fd0f61929a456269b41669e7d9612f5/acdf/f4dc/tmph19ri1tp/HG02145.1.gaf -g /data/tmp/9fd0f61929a456269b41669e7d9612f5/acdf/f4dc/tmph19ri1tp/mg.gfa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/acdf/f4dc/tmph19ri1tp/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.6023 seconds and 3.2 Gi memory with job-memory 179.9 Gi. Percent utilization: 1.753
2023-07-05 12:13:33.074596: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/9fd0f61929a456269b41669e7d9612f5/acdf/f4dc/tmph19ri1tp/HG02145.1.gaf.unstable -l /data/tmp/9fd0f61929a456269b41669e7d9612f5/acdf/f4dc/tmph19ri1tp/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:13:36.065776: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/9fd0f61929a456269b41669e7d9612f5/acdf/f4dc/tmph19ri1tp/HG02145.1.gaf.unstable -l /data/tmp/9fd0f61929a456269b41669e7d9612f5/acdf/f4dc/tmph19ri1tp/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.99 seconds and 39.6 Mi memory with job-memory 179.9 Gi. Percent utilization: 0.02152
2023-07-05 12:13:37.493102: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c261/df8b/tmpujjkp7ic/mg.gfa /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c261/df8b/tmpujjkp7ic/HG03453.2.fa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c261/df8b/tmpujjkp7ic/HG03453.2.gaf -c -xasm -t 16'" in 1004.2491 seconds and 40.2 Gi memory with job-memory 186.5 Gi. Percent utilization: 21.54
2023-07-05 12:13:37.493839: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c261/df8b/tmpujjkp7ic/HG03453.2.gaf -g /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c261/df8b/tmpujjkp7ic/mg.gfa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c261/df8b/tmpujjkp7ic/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:13:38.195413: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f397/ac8d/tmp4a_42sa7/mg.gfa /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f397/ac8d/tmp4a_42sa7/HG02109.2.fa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f397/ac8d/tmp4a_42sa7/HG02109.2.gaf -c -xasm -t 16'" in 958.9674 seconds and 40.6 Gi memory with job-memory 185.2 Gi. Percent utilization: 21.91
2023-07-05 12:13:38.196237: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f397/ac8d/tmp4a_42sa7/HG02109.2.gaf -g /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f397/ac8d/tmp4a_42sa7/mg.gfa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f397/ac8d/tmp4a_42sa7/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:13:49.292464: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/e41d97042ffa55f1a1fc324d5464836c/881f/68c5/tmpb1ymb9gx/HG01109.1.gaf -g /data/tmp/e41d97042ffa55f1a1fc324d5464836c/881f/68c5/tmpb1ymb9gx/mg.gfa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/881f/68c5/tmpb1ymb9gx/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.5796 seconds and 3.2 Gi memory with job-memory 178.9 Gi. Percent utilization: 1.763
2023-07-05 12:13:49.293059: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/e41d97042ffa55f1a1fc324d5464836c/881f/68c5/tmpb1ymb9gx/HG01109.1.gaf.unstable -l /data/tmp/e41d97042ffa55f1a1fc324d5464836c/881f/68c5/tmpb1ymb9gx/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:13:52.180850: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/e41d97042ffa55f1a1fc324d5464836c/881f/68c5/tmpb1ymb9gx/HG01109.1.gaf.unstable -l /data/tmp/e41d97042ffa55f1a1fc324d5464836c/881f/68c5/tmpb1ymb9gx/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.8866 seconds and 42.7 Mi memory with job-memory 178.9 Gi. Percent utilization: 0.02332
2023-07-05 12:13:53.206819: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/0a9f88a4b0315a71bc09997943db6609/1681/cb51/tmpbvrirabm/mg.gfa /data/tmp/0a9f88a4b0315a71bc09997943db6609/1681/cb51/tmpbvrirabm/HG02486.1.fa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/1681/cb51/tmpbvrirabm/HG02486.1.gaf -c -xasm -t 16'" in 973.9581 seconds and 53.0 Gi memory with job-memory 179.5 Gi. Percent utilization: 29.55
2023-07-05 12:13:53.207778: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/0a9f88a4b0315a71bc09997943db6609/1681/cb51/tmpbvrirabm/HG02486.1.gaf -g /data/tmp/0a9f88a4b0315a71bc09997943db6609/1681/cb51/tmpbvrirabm/mg.gfa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/1681/cb51/tmpbvrirabm/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:13:56.187746: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/2a95a9ee729755068515bad92da082de/ab10/15ef/tmp81olk0rg/mg.gfa /data/tmp/2a95a9ee729755068515bad92da082de/ab10/15ef/tmp81olk0rg/HG02559.1.fa -o /data/tmp/2a95a9ee729755068515bad92da082de/ab10/15ef/tmp81olk0rg/HG02559.1.gaf -c -xasm -t 16'" in 1024.3694 seconds and 51.4 Gi memory with job-memory 185.1 Gi. Percent utilization: 27.75
2023-07-05 12:13:56.188619: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/2a95a9ee729755068515bad92da082de/ab10/15ef/tmp81olk0rg/HG02559.1.gaf -g /data/tmp/2a95a9ee729755068515bad92da082de/ab10/15ef/tmp81olk0rg/mg.gfa -o /data/tmp/2a95a9ee729755068515bad92da082de/ab10/15ef/tmp81olk0rg/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:13:57.614140: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/9fd0f61929a456269b41669e7d9612f5/c954/2915/tmptej1dwnd/mg.gfa /data/tmp/9fd0f61929a456269b41669e7d9612f5/c954/2915/tmptej1dwnd/HG01258.1.fa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/c954/2915/tmptej1dwnd/HG01258.1.gaf -c -xasm -t 16'" in 978.7745 seconds and 48.3 Gi memory with job-memory 178.5 Gi. Percent utilization: 27.05
2023-07-05 12:13:57.614789: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/9fd0f61929a456269b41669e7d9612f5/c954/2915/tmptej1dwnd/HG01258.1.gaf -g /data/tmp/9fd0f61929a456269b41669e7d9612f5/c954/2915/tmptej1dwnd/mg.gfa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/c954/2915/tmptej1dwnd/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:14:02.258939: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c261/df8b/tmpujjkp7ic/HG03453.2.gaf -g /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c261/df8b/tmpujjkp7ic/mg.gfa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c261/df8b/tmpujjkp7ic/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.7639 seconds and 3.2 Gi memory with job-memory 186.5 Gi. Percent utilization: 1.691
2023-07-05 12:14:02.259525: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c261/df8b/tmpujjkp7ic/HG03453.2.gaf.unstable -l /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c261/df8b/tmpujjkp7ic/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:14:03.178571: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f397/ac8d/tmp4a_42sa7/HG02109.2.gaf -g /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f397/ac8d/tmp4a_42sa7/mg.gfa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f397/ac8d/tmp4a_42sa7/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.9811 seconds and 3.2 Gi memory with job-memory 185.2 Gi. Percent utilization: 1.703
2023-07-05 12:14:03.179138: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f397/ac8d/tmp4a_42sa7/HG02109.2.gaf.unstable -l /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f397/ac8d/tmp4a_42sa7/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:14:05.215061: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c261/df8b/tmpujjkp7ic/HG03453.2.gaf.unstable -l /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c261/df8b/tmpujjkp7ic/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.9543 seconds and 41.4 Mi memory with job-memory 186.5 Gi. Percent utilization: 0.0217
2023-07-05 12:14:05.763493: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f397/ac8d/tmp4a_42sa7/HG02109.2.gaf.unstable -l /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f397/ac8d/tmp4a_42sa7/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.5832 seconds and 41.6 Mi memory with job-memory 185.2 Gi. Percent utilization: 0.02196
2023-07-05 12:14:08.988073: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6bec/5aa6/tmps5k3b6m7/mg.gfa /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6bec/5aa6/tmps5k3b6m7/HG01361.1.fa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6bec/5aa6/tmps5k3b6m7/HG01361.1.gaf -c -xasm -t 16'" in 1036.0302 seconds and 52.4 Gi memory with job-memory 184.2 Gi. Percent utilization: 28.42
2023-07-05 12:14:08.988780: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6bec/5aa6/tmps5k3b6m7/HG01361.1.gaf -g /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6bec/5aa6/tmps5k3b6m7/mg.gfa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6bec/5aa6/tmps5k3b6m7/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:14:10.905370: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/e41d97042ffa55f1a1fc324d5464836c/cf1d/b254/tmp82okq5wk/mg.gfa /data/tmp/e41d97042ffa55f1a1fc324d5464836c/cf1d/b254/tmp82okq5wk/HG03098.1.fa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/cf1d/b254/tmp82okq5wk/HG03098.1.gaf -c -xasm -t 16'" in 1124.9143 seconds and 45.7 Gi memory with job-memory 179.8 Gi. Percent utilization: 25.43
2023-07-05 12:14:10.906037: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/e41d97042ffa55f1a1fc324d5464836c/cf1d/b254/tmp82okq5wk/HG03098.1.gaf -g /data/tmp/e41d97042ffa55f1a1fc324d5464836c/cf1d/b254/tmp82okq5wk/mg.gfa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/cf1d/b254/tmp82okq5wk/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:14:17.747909: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/becf/0dc4/tmpp66xeicy/mg.gfa /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/becf/0dc4/tmpp66xeicy/HG01243.2.fa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/becf/0dc4/tmpp66xeicy/HG01243.2.gaf -c -xasm -t 16'" in 1075.3368 seconds and 45.0 Gi memory with job-memory 185.4 Gi. Percent utilization: 24.26
2023-07-05 12:14:17.748575: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/becf/0dc4/tmpp66xeicy/HG01243.2.gaf -g /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/becf/0dc4/tmpp66xeicy/mg.gfa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/becf/0dc4/tmpp66xeicy/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:14:18.349037: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/0a9f88a4b0315a71bc09997943db6609/1681/cb51/tmpbvrirabm/HG02486.1.gaf -g /data/tmp/0a9f88a4b0315a71bc09997943db6609/1681/cb51/tmpbvrirabm/mg.gfa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/1681/cb51/tmpbvrirabm/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 25.1398 seconds and 3.2 Gi memory with job-memory 179.5 Gi. Percent utilization: 1.757
2023-07-05 12:14:18.349637: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/0a9f88a4b0315a71bc09997943db6609/1681/cb51/tmpbvrirabm/HG02486.1.gaf.unstable -l /data/tmp/0a9f88a4b0315a71bc09997943db6609/1681/cb51/tmpbvrirabm/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:14:21.165720: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/2a95a9ee729755068515bad92da082de/ab10/15ef/tmp81olk0rg/HG02559.1.gaf -g /data/tmp/2a95a9ee729755068515bad92da082de/ab10/15ef/tmp81olk0rg/mg.gfa -o /data/tmp/2a95a9ee729755068515bad92da082de/ab10/15ef/tmp81olk0rg/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.9758 seconds and 3.2 Gi memory with job-memory 185.1 Gi. Percent utilization: 1.704
2023-07-05 12:14:21.166345: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/2a95a9ee729755068515bad92da082de/ab10/15ef/tmp81olk0rg/HG02559.1.gaf.unstable -l /data/tmp/2a95a9ee729755068515bad92da082de/ab10/15ef/tmp81olk0rg/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:14:21.348780: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/0a9f88a4b0315a71bc09997943db6609/1681/cb51/tmpbvrirabm/HG02486.1.gaf.unstable -l /data/tmp/0a9f88a4b0315a71bc09997943db6609/1681/cb51/tmpbvrirabm/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.9981 seconds and 47.6 Mi memory with job-memory 179.5 Gi. Percent utilization: 0.02592
2023-07-05 12:14:21.979041: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/9fd0f61929a456269b41669e7d9612f5/c954/2915/tmptej1dwnd/HG01258.1.gaf -g /data/tmp/9fd0f61929a456269b41669e7d9612f5/c954/2915/tmptej1dwnd/mg.gfa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/c954/2915/tmptej1dwnd/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.363 seconds and 3.2 Gi memory with job-memory 178.5 Gi. Percent utilization: 1.767
2023-07-05 12:14:21.979592: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/9fd0f61929a456269b41669e7d9612f5/c954/2915/tmptej1dwnd/HG01258.1.gaf.unstable -l /data/tmp/9fd0f61929a456269b41669e7d9612f5/c954/2915/tmptej1dwnd/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:14:23.739878: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/2a95a9ee729755068515bad92da082de/ab10/15ef/tmp81olk0rg/HG02559.1.gaf.unstable -l /data/tmp/2a95a9ee729755068515bad92da082de/ab10/15ef/tmp81olk0rg/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.5724 seconds and 47.9 Mi memory with job-memory 185.1 Gi. Percent utilization: 0.02527
2023-07-05 12:14:24.837516: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/9fd0f61929a456269b41669e7d9612f5/c954/2915/tmptej1dwnd/HG01258.1.gaf.unstable -l /data/tmp/9fd0f61929a456269b41669e7d9612f5/c954/2915/tmptej1dwnd/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.8568 seconds and 46.2 Mi memory with job-memory 178.5 Gi. Percent utilization: 0.02526
2023-07-05 12:14:25.605807: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9416/2bb0/tmptvwr5kln/mg.gfa /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9416/2bb0/tmptvwr5kln/HG02818.1.fa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9416/2bb0/tmptvwr5kln/HG02818.1.gaf -c -xasm -t 16'" in 1082.5718 seconds and 38.6 Gi memory with job-memory 184.8 Gi. Percent utilization: 20.88
2023-07-05 12:14:25.606544: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9416/2bb0/tmptvwr5kln/HG02818.1.gaf -g /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9416/2bb0/tmptvwr5kln/mg.gfa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9416/2bb0/tmptvwr5kln/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:14:25.778458: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/0a9f88a4b0315a71bc09997943db6609/5aad/cae8/tmphszo3vfh/mg.gfa /data/tmp/0a9f88a4b0315a71bc09997943db6609/5aad/cae8/tmphszo3vfh/HG02723.2.fa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/5aad/cae8/tmphszo3vfh/HG02723.2.gaf -c -xasm -t 16'" in 1005.1226 seconds and 39.2 Gi memory with job-memory 185.3 Gi. Percent utilization: 21.13
2023-07-05 12:14:25.779173: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/0a9f88a4b0315a71bc09997943db6609/5aad/cae8/tmphszo3vfh/HG02723.2.gaf -g /data/tmp/0a9f88a4b0315a71bc09997943db6609/5aad/cae8/tmphszo3vfh/mg.gfa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/5aad/cae8/tmphszo3vfh/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:14:33.564299: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6bec/5aa6/tmps5k3b6m7/HG01361.1.gaf -g /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6bec/5aa6/tmps5k3b6m7/mg.gfa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6bec/5aa6/tmps5k3b6m7/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.5743 seconds and 3.2 Gi memory with job-memory 184.2 Gi. Percent utilization: 1.712
2023-07-05 12:14:33.564857: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6bec/5aa6/tmps5k3b6m7/HG01361.1.gaf.unstable -l /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6bec/5aa6/tmps5k3b6m7/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:14:35.468000: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/e41d97042ffa55f1a1fc324d5464836c/cf1d/b254/tmp82okq5wk/HG03098.1.gaf -g /data/tmp/e41d97042ffa55f1a1fc324d5464836c/cf1d/b254/tmp82okq5wk/mg.gfa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/cf1d/b254/tmp82okq5wk/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.5609 seconds and 3.2 Gi memory with job-memory 179.8 Gi. Percent utilization: 1.754
2023-07-05 12:14:35.468564: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/e41d97042ffa55f1a1fc324d5464836c/cf1d/b254/tmp82okq5wk/HG03098.1.gaf.unstable -l /data/tmp/e41d97042ffa55f1a1fc324d5464836c/cf1d/b254/tmp82okq5wk/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:14:35.987289: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6bec/5aa6/tmps5k3b6m7/HG01361.1.gaf.unstable -l /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6bec/5aa6/tmps5k3b6m7/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.4214 seconds and 45.8 Mi memory with job-memory 184.2 Gi. Percent utilization: 0.02428
2023-07-05 12:14:36.882087: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1b59/c27e/tmpfpf8xt70/mg.gfa /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1b59/c27e/tmpfpf8xt70/HG01978.1.fa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1b59/c27e/tmpfpf8xt70/HG01978.1.gaf -c -xasm -t 16'" in 1147.5698 seconds and 52.3 Gi memory with job-memory 187.0 Gi. Percent utilization: 27.96
2023-07-05 12:14:36.883017: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1b59/c27e/tmpfpf8xt70/HG01978.1.gaf -g /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1b59/c27e/tmpfpf8xt70/mg.gfa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1b59/c27e/tmpfpf8xt70/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:14:38.708275: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/e41d97042ffa55f1a1fc324d5464836c/cf1d/b254/tmp82okq5wk/HG03098.1.gaf.unstable -l /data/tmp/e41d97042ffa55f1a1fc324d5464836c/cf1d/b254/tmp82okq5wk/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 3.2386 seconds and 43.2 Mi memory with job-memory 179.8 Gi. Percent utilization: 0.0235
2023-07-05 12:14:41.980720: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/becf/0dc4/tmpp66xeicy/HG01243.2.gaf -g /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/becf/0dc4/tmpp66xeicy/mg.gfa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/becf/0dc4/tmpp66xeicy/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.231 seconds and 3.2 Gi memory with job-memory 185.4 Gi. Percent utilization: 1.701
2023-07-05 12:14:41.981259: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/becf/0dc4/tmpp66xeicy/HG01243.2.gaf.unstable -l /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/becf/0dc4/tmpp66xeicy/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:14:43.108004: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/9fd0f61929a456269b41669e7d9612f5/7c97/4b14/tmp6zzhrstz/mg.gfa /data/tmp/9fd0f61929a456269b41669e7d9612f5/7c97/4b14/tmp6zzhrstz/HG01361.2.fa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/7c97/4b14/tmp6zzhrstz/HG01361.2.gaf -c -xasm -t 16'" in 1022.2064 seconds and 50.9 Gi memory with job-memory 185.2 Gi. Percent utilization: 27.5
2023-07-05 12:14:43.108665: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/9fd0f61929a456269b41669e7d9612f5/7c97/4b14/tmp6zzhrstz/HG01361.2.gaf -g /data/tmp/9fd0f61929a456269b41669e7d9612f5/7c97/4b14/tmp6zzhrstz/mg.gfa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/7c97/4b14/tmp6zzhrstz/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:14:44.398078: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/becf/0dc4/tmpp66xeicy/HG01243.2.gaf.unstable -l /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/becf/0dc4/tmpp66xeicy/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.4156 seconds and 46.3 Mi memory with job-memory 185.4 Gi. Percent utilization: 0.02441
2023-07-05 12:14:48.835372: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/0a9f88a4b0315a71bc09997943db6609/630b/efa4/tmp4hqs8pnp/mg.gfa /data/tmp/0a9f88a4b0315a71bc09997943db6609/630b/efa4/tmp4hqs8pnp/HG02109.1.fa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/630b/efa4/tmp4hqs8pnp/HG02109.1.gaf -c -xasm -t 16'" in 1028.0952 seconds and 39.1 Gi memory with job-memory 185.9 Gi. Percent utilization: 21.03
2023-07-05 12:14:48.836066: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/0a9f88a4b0315a71bc09997943db6609/630b/efa4/tmp4hqs8pnp/HG02109.1.gaf -g /data/tmp/0a9f88a4b0315a71bc09997943db6609/630b/efa4/tmp4hqs8pnp/mg.gfa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/630b/efa4/tmp4hqs8pnp/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:14:50.306219: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9416/2bb0/tmptvwr5kln/HG02818.1.gaf -g /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9416/2bb0/tmptvwr5kln/mg.gfa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9416/2bb0/tmptvwr5kln/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.6984 seconds and 3.2 Gi memory with job-memory 184.8 Gi. Percent utilization: 1.706
2023-07-05 12:14:50.306851: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9416/2bb0/tmptvwr5kln/HG02818.1.gaf.unstable -l /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9416/2bb0/tmptvwr5kln/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:14:50.379701: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/0a9f88a4b0315a71bc09997943db6609/5aad/cae8/tmphszo3vfh/HG02723.2.gaf -g /data/tmp/0a9f88a4b0315a71bc09997943db6609/5aad/cae8/tmphszo3vfh/mg.gfa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/5aad/cae8/tmphszo3vfh/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.5993 seconds and 3.2 Gi memory with job-memory 185.3 Gi. Percent utilization: 1.702
2023-07-05 12:14:50.380245: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/0a9f88a4b0315a71bc09997943db6609/5aad/cae8/tmphszo3vfh/HG02723.2.gaf.unstable -l /data/tmp/0a9f88a4b0315a71bc09997943db6609/5aad/cae8/tmphszo3vfh/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:14:52.807514: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9416/2bb0/tmptvwr5kln/HG02818.1.gaf.unstable -l /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9416/2bb0/tmptvwr5kln/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.4994 seconds and 40.7 Mi memory with job-memory 184.8 Gi. Percent utilization: 0.02149
2023-07-05 12:14:52.989079: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/0a9f88a4b0315a71bc09997943db6609/5aad/cae8/tmphszo3vfh/HG02723.2.gaf.unstable -l /data/tmp/0a9f88a4b0315a71bc09997943db6609/5aad/cae8/tmphszo3vfh/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.6077 seconds and 44.5 Mi memory with job-memory 185.3 Gi. Percent utilization: 0.02348
2023-07-05 12:14:59.156209: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cb35/9ab6/tmp02dn21tx/mg.gfa /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cb35/9ab6/tmp02dn21tx/NA20129.2.fa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cb35/9ab6/tmp02dn21tx/NA20129.2.gaf -c -xasm -t 16'" in 1169.1703 seconds and 41.2 Gi memory with job-memory 186.3 Gi. Percent utilization: 22.11
2023-07-05 12:14:59.156895: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cb35/9ab6/tmp02dn21tx/NA20129.2.gaf -g /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cb35/9ab6/tmp02dn21tx/mg.gfa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cb35/9ab6/tmp02dn21tx/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:14:59.545477: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/daf9/8401/tmpweme7ygt/mg.gfa /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/daf9/8401/tmpweme7ygt/HG01106.2.fa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/daf9/8401/tmpweme7ygt/HG01106.2.gaf -c -xasm -t 16'" in 1116.9532 seconds and 51.5 Gi memory with job-memory 185.8 Gi. Percent utilization: 27.73
2023-07-05 12:14:59.546140: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/daf9/8401/tmpweme7ygt/HG01106.2.gaf -g /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/daf9/8401/tmpweme7ygt/mg.gfa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/daf9/8401/tmpweme7ygt/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:15:01.223124: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1b59/c27e/tmpfpf8xt70/HG01978.1.gaf -g /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1b59/c27e/tmpfpf8xt70/mg.gfa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1b59/c27e/tmpfpf8xt70/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.3388 seconds and 3.2 Gi memory with job-memory 187.0 Gi. Percent utilization: 1.687
2023-07-05 12:15:01.223713: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1b59/c27e/tmpfpf8xt70/HG01978.1.gaf.unstable -l /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1b59/c27e/tmpfpf8xt70/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:15:04.052424: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1b59/c27e/tmpfpf8xt70/HG01978.1.gaf.unstable -l /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1b59/c27e/tmpfpf8xt70/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.8275 seconds and 44.8 Mi memory with job-memory 187.0 Gi. Percent utilization: 0.0234
2023-07-05 12:15:06.982210: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/9fd0f61929a456269b41669e7d9612f5/7c97/4b14/tmp6zzhrstz/HG01361.2.gaf -g /data/tmp/9fd0f61929a456269b41669e7d9612f5/7c97/4b14/tmp6zzhrstz/mg.gfa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/7c97/4b14/tmp6zzhrstz/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 23.8724 seconds and 3.2 Gi memory with job-memory 185.2 Gi. Percent utilization: 1.703
2023-07-05 12:15:06.982744: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/9fd0f61929a456269b41669e7d9612f5/7c97/4b14/tmp6zzhrstz/HG01361.2.gaf.unstable -l /data/tmp/9fd0f61929a456269b41669e7d9612f5/7c97/4b14/tmp6zzhrstz/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:15:09.528856: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/9fd0f61929a456269b41669e7d9612f5/7c97/4b14/tmp6zzhrstz/HG01361.2.gaf.unstable -l /data/tmp/9fd0f61929a456269b41669e7d9612f5/7c97/4b14/tmp6zzhrstz/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.545 seconds and 50.2 Mi memory with job-memory 185.2 Gi. Percent utilization: 0.02648
2023-07-05 12:15:13.215606: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/0a9f88a4b0315a71bc09997943db6609/630b/efa4/tmp4hqs8pnp/HG02109.1.gaf -g /data/tmp/0a9f88a4b0315a71bc09997943db6609/630b/efa4/tmp4hqs8pnp/mg.gfa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/630b/efa4/tmp4hqs8pnp/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.3784 seconds and 3.2 Gi memory with job-memory 185.9 Gi. Percent utilization: 1.696
2023-07-05 12:15:13.216149: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/0a9f88a4b0315a71bc09997943db6609/630b/efa4/tmp4hqs8pnp/HG02109.1.gaf.unstable -l /data/tmp/0a9f88a4b0315a71bc09997943db6609/630b/efa4/tmp4hqs8pnp/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:15:15.797829: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/0a9f88a4b0315a71bc09997943db6609/630b/efa4/tmp4hqs8pnp/HG02109.1.gaf.unstable -l /data/tmp/0a9f88a4b0315a71bc09997943db6609/630b/efa4/tmp4hqs8pnp/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.5806 seconds and 40.9 Mi memory with job-memory 185.9 Gi. Percent utilization: 0.0215
2023-07-05 12:15:23.191449: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cb35/9ab6/tmp02dn21tx/NA20129.2.gaf -g /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cb35/9ab6/tmp02dn21tx/mg.gfa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cb35/9ab6/tmp02dn21tx/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.0333 seconds and 3.2 Gi memory with job-memory 186.3 Gi. Percent utilization: 1.692
2023-07-05 12:15:23.192025: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cb35/9ab6/tmp02dn21tx/NA20129.2.gaf.unstable -l /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cb35/9ab6/tmp02dn21tx/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:15:23.920592: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/daf9/8401/tmpweme7ygt/HG01106.2.gaf -g /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/daf9/8401/tmpweme7ygt/mg.gfa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/daf9/8401/tmpweme7ygt/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.3732 seconds and 3.2 Gi memory with job-memory 185.8 Gi. Percent utilization: 1.697
2023-07-05 12:15:23.921147: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/daf9/8401/tmpweme7ygt/HG01106.2.gaf.unstable -l /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/daf9/8401/tmpweme7ygt/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:15:24.488688: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ccbe/5214/tmpqiznk47v/mg.gfa /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ccbe/5214/tmpqiznk47v/HG02145.2.fa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ccbe/5214/tmpqiznk47v/HG02145.2.gaf -c -xasm -t 16'" in 1141.9792 seconds and 41.7 Gi memory with job-memory 185.5 Gi. Percent utilization: 22.51
2023-07-05 12:15:24.489342: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ccbe/5214/tmpqiznk47v/HG02145.2.gaf -g /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ccbe/5214/tmpqiznk47v/mg.gfa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ccbe/5214/tmpqiznk47v/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:15:25.872299: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cb35/9ab6/tmp02dn21tx/NA20129.2.gaf.unstable -l /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cb35/9ab6/tmp02dn21tx/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.6791 seconds and 44.3 Mi memory with job-memory 186.3 Gi. Percent utilization: 0.02321
2023-07-05 12:15:26.329293: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/daf9/8401/tmpweme7ygt/HG01106.2.gaf.unstable -l /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/daf9/8401/tmpweme7ygt/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.4069 seconds and 43.2 Mi memory with job-memory 185.8 Gi. Percent utilization: 0.02273
2023-07-05 12:15:42.083548: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6d8b/0a6b/tmpoi061gk4/mg.gfa /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6d8b/0a6b/tmpoi061gk4/HG02080.1.fa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6d8b/0a6b/tmpoi061gk4/HG02080.1.gaf -c -xasm -t 16'" in 1129.0301 seconds and 40.2 Gi memory with job-memory 185.1 Gi. Percent utilization: 21.7
2023-07-05 12:15:42.084242: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6d8b/0a6b/tmpoi061gk4/HG02080.1.gaf -g /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6d8b/0a6b/tmpoi061gk4/mg.gfa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6d8b/0a6b/tmpoi061gk4/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:15:49.320773: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ccbe/5214/tmpqiznk47v/HG02145.2.gaf -g /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ccbe/5214/tmpqiznk47v/mg.gfa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ccbe/5214/tmpqiznk47v/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.8302 seconds and 3.2 Gi memory with job-memory 185.5 Gi. Percent utilization: 1.7
2023-07-05 12:15:49.321302: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ccbe/5214/tmpqiznk47v/HG02145.2.gaf.unstable -l /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ccbe/5214/tmpqiznk47v/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:15:51.966287: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ccbe/5214/tmpqiznk47v/HG02145.2.gaf.unstable -l /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ccbe/5214/tmpqiznk47v/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.6439 seconds and 42.5 Mi memory with job-memory 185.5 Gi. Percent utilization: 0.0224
2023-07-05 12:16:01.753482: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/27bafead6d355b998e86173ec3f6a1a4/523d/fa4e/tmpr3bccbes/mg.gfa /data/tmp/27bafead6d355b998e86173ec3f6a1a4/523d/fa4e/tmpr3bccbes/HG01123.2.fa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/523d/fa4e/tmpr3bccbes/HG01123.2.gaf -c -xasm -t 16'" in 1150.5134 seconds and 49.1 Gi memory with job-memory 184.4 Gi. Percent utilization: 26.64
2023-07-05 12:16:01.754145: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/27bafead6d355b998e86173ec3f6a1a4/523d/fa4e/tmpr3bccbes/HG01123.2.gaf -g /data/tmp/27bafead6d355b998e86173ec3f6a1a4/523d/fa4e/tmpr3bccbes/mg.gfa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/523d/fa4e/tmpr3bccbes/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:16:04.097761: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f790/e5df/tmp4c617ow1/mg.gfa /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f790/e5df/tmp4c617ow1/NA18906.2.fa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f790/e5df/tmp4c617ow1/NA18906.2.gaf -c -xasm -t 16'" in 1104.016 seconds and 45.5 Gi memory with job-memory 187.0 Gi. Percent utilization: 24.33
2023-07-05 12:16:04.098463: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f790/e5df/tmp4c617ow1/NA18906.2.gaf -g /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f790/e5df/tmp4c617ow1/mg.gfa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f790/e5df/tmp4c617ow1/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:16:06.298464: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6d8b/0a6b/tmpoi061gk4/HG02080.1.gaf -g /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6d8b/0a6b/tmpoi061gk4/mg.gfa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6d8b/0a6b/tmpoi061gk4/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.213 seconds and 3.2 Gi memory with job-memory 185.1 Gi. Percent utilization: 1.704
2023-07-05 12:16:06.299036: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6d8b/0a6b/tmpoi061gk4/HG02080.1.gaf.unstable -l /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6d8b/0a6b/tmpoi061gk4/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:16:08.687155: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6d8b/0a6b/tmpoi061gk4/HG02080.1.gaf.unstable -l /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/6d8b/0a6b/tmpoi061gk4/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.387 seconds and 40.7 Mi memory with job-memory 185.1 Gi. Percent utilization: 0.02146
2023-07-05 12:16:14.166598: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/9eeeec3d467250f1999ba98b3759d207/b2ef/244c/tmped4mq6m2/mg.gfa /data/tmp/9eeeec3d467250f1999ba98b3759d207/b2ef/244c/tmped4mq6m2/HG01928.1.fa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/b2ef/244c/tmped4mq6m2/HG01928.1.gaf -c -xasm -t 16'" in 1168.6192 seconds and 47.8 Gi memory with job-memory 179.0 Gi. Percent utilization: 26.69
2023-07-05 12:16:14.167341: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/9eeeec3d467250f1999ba98b3759d207/b2ef/244c/tmped4mq6m2/HG01928.1.gaf -g /data/tmp/9eeeec3d467250f1999ba98b3759d207/b2ef/244c/tmped4mq6m2/mg.gfa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/b2ef/244c/tmped4mq6m2/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:16:19.692822: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/0a9f88a4b0315a71bc09997943db6609/ab24/fe63/tmp9gyf1ewt/mg.gfa /data/tmp/0a9f88a4b0315a71bc09997943db6609/ab24/fe63/tmp9gyf1ewt/HG01123.1.fa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/ab24/fe63/tmp9gyf1ewt/HG01123.1.gaf -c -xasm -t 16'" in 1119.1279 seconds and 50.1 Gi memory with job-memory 184.5 Gi. Percent utilization: 27.18
2023-07-05 12:16:19.693534: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/0a9f88a4b0315a71bc09997943db6609/ab24/fe63/tmp9gyf1ewt/HG01123.1.gaf -g /data/tmp/0a9f88a4b0315a71bc09997943db6609/ab24/fe63/tmp9gyf1ewt/mg.gfa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/ab24/fe63/tmp9gyf1ewt/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:16:26.307028: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/27bafead6d355b998e86173ec3f6a1a4/523d/fa4e/tmpr3bccbes/HG01123.2.gaf -g /data/tmp/27bafead6d355b998e86173ec3f6a1a4/523d/fa4e/tmpr3bccbes/mg.gfa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/523d/fa4e/tmpr3bccbes/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.5517 seconds and 3.2 Gi memory with job-memory 184.4 Gi. Percent utilization: 1.71
2023-07-05 12:16:26.307578: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/27bafead6d355b998e86173ec3f6a1a4/523d/fa4e/tmpr3bccbes/HG01123.2.gaf.unstable -l /data/tmp/27bafead6d355b998e86173ec3f6a1a4/523d/fa4e/tmpr3bccbes/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:16:28.389132: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f790/e5df/tmp4c617ow1/NA18906.2.gaf -g /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f790/e5df/tmp4c617ow1/mg.gfa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f790/e5df/tmp4c617ow1/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.2895 seconds and 3.2 Gi memory with job-memory 187.0 Gi. Percent utilization: 1.687
2023-07-05 12:16:28.389697: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f790/e5df/tmp4c617ow1/NA18906.2.gaf.unstable -l /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f790/e5df/tmp4c617ow1/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:16:28.607904: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/27bafead6d355b998e86173ec3f6a1a4/523d/fa4e/tmpr3bccbes/HG01123.2.gaf.unstable -l /data/tmp/27bafead6d355b998e86173ec3f6a1a4/523d/fa4e/tmpr3bccbes/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.2992 seconds and 49.3 Mi memory with job-memory 184.4 Gi. Percent utilization: 0.02609
2023-07-05 12:16:31.165283: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f790/e5df/tmp4c617ow1/NA18906.2.gaf.unstable -l /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f790/e5df/tmp4c617ow1/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.7744 seconds and 45.6 Mi memory with job-memory 187.0 Gi. Percent utilization: 0.0238
2023-07-05 12:16:37.052288: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac33/7b9f/tmp8pmb2ff8/mg.gfa /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac33/7b9f/tmp8pmb2ff8/HG03486.2.fa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac33/7b9f/tmp8pmb2ff8/HG03486.2.gaf -c -xasm -t 16'" in 1213.8316 seconds and 41.3 Gi memory with job-memory 185.7 Gi. Percent utilization: 22.26
2023-07-05 12:16:37.053028: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac33/7b9f/tmp8pmb2ff8/HG03486.2.gaf -g /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac33/7b9f/tmp8pmb2ff8/mg.gfa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac33/7b9f/tmp8pmb2ff8/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:16:37.883547: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1bf2/6e1c/tmpwtfm9vrz/mg.gfa /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1bf2/6e1c/tmpwtfm9vrz/HG01358.2.fa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1bf2/6e1c/tmpwtfm9vrz/HG01358.2.gaf -c -xasm -t 16'" in 1215.5751 seconds and 47.9 Gi memory with job-memory 185.4 Gi. Percent utilization: 25.84
2023-07-05 12:16:37.884188: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1bf2/6e1c/tmpwtfm9vrz/HG01358.2.gaf -g /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1bf2/6e1c/tmpwtfm9vrz/mg.gfa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1bf2/6e1c/tmpwtfm9vrz/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:16:38.791989: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/9eeeec3d467250f1999ba98b3759d207/b2ef/244c/tmped4mq6m2/HG01928.1.gaf -g /data/tmp/9eeeec3d467250f1999ba98b3759d207/b2ef/244c/tmped4mq6m2/mg.gfa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/b2ef/244c/tmped4mq6m2/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.6234 seconds and 3.2 Gi memory with job-memory 179.0 Gi. Percent utilization: 1.762
2023-07-05 12:16:38.792569: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/9eeeec3d467250f1999ba98b3759d207/b2ef/244c/tmped4mq6m2/HG01928.1.gaf.unstable -l /data/tmp/9eeeec3d467250f1999ba98b3759d207/b2ef/244c/tmped4mq6m2/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:16:39.150577: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/fb6bb230be1f50648d9c685404953bb7/0924/01df/tmpdcz1cfr2/mg.gfa /data/tmp/fb6bb230be1f50648d9c685404953bb7/0924/01df/tmpdcz1cfr2/HG00438.2.fa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/0924/01df/tmpdcz1cfr2/HG00438.2.gaf -c -xasm -t 16'" in 1137.5577 seconds and 52.2 Gi memory with job-memory 185.8 Gi. Percent utilization: 28.08
2023-07-05 12:16:39.151321: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/fb6bb230be1f50648d9c685404953bb7/0924/01df/tmpdcz1cfr2/HG00438.2.gaf -g /data/tmp/fb6bb230be1f50648d9c685404953bb7/0924/01df/tmpdcz1cfr2/mg.gfa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/0924/01df/tmpdcz1cfr2/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:16:41.772650: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/9eeeec3d467250f1999ba98b3759d207/b2ef/244c/tmped4mq6m2/HG01928.1.gaf.unstable -l /data/tmp/9eeeec3d467250f1999ba98b3759d207/b2ef/244c/tmped4mq6m2/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.9789 seconds and 49.0 Mi memory with job-memory 179.0 Gi. Percent utilization: 0.02674
2023-07-05 12:16:43.304000: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2755/6a72/tmphbw4o4gd/mg.gfa /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2755/6a72/tmphbw4o4gd/HG02630.1.fa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2755/6a72/tmphbw4o4gd/HG02630.1.gaf -c -xasm -t 16'" in 1143.2376 seconds and 45.6 Gi memory with job-memory 186.8 Gi. Percent utilization: 24.39
2023-07-05 12:16:43.304723: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2755/6a72/tmphbw4o4gd/HG02630.1.gaf -g /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2755/6a72/tmphbw4o4gd/mg.gfa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2755/6a72/tmphbw4o4gd/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:16:43.771645: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/2a95a9ee729755068515bad92da082de/924b/5c54/tmpl1f6atu0/mg.gfa /data/tmp/2a95a9ee729755068515bad92da082de/924b/5c54/tmpl1f6atu0/HG02055.1.fa -o /data/tmp/2a95a9ee729755068515bad92da082de/924b/5c54/tmpl1f6atu0/HG02055.1.gaf -c -xasm -t 16'" in 1194.5979 seconds and 42.8 Gi memory with job-memory 180.6 Gi. Percent utilization: 23.68
2023-07-05 12:16:43.772366: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/2a95a9ee729755068515bad92da082de/924b/5c54/tmpl1f6atu0/HG02055.1.gaf -g /data/tmp/2a95a9ee729755068515bad92da082de/924b/5c54/tmpl1f6atu0/mg.gfa -o /data/tmp/2a95a9ee729755068515bad92da082de/924b/5c54/tmpl1f6atu0/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:16:44.387758: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/0a9f88a4b0315a71bc09997943db6609/ab24/fe63/tmp9gyf1ewt/HG01123.1.gaf -g /data/tmp/0a9f88a4b0315a71bc09997943db6609/ab24/fe63/tmp9gyf1ewt/mg.gfa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/ab24/fe63/tmp9gyf1ewt/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.693 seconds and 3.2 Gi memory with job-memory 184.5 Gi. Percent utilization: 1.709
2023-07-05 12:16:44.388297: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/0a9f88a4b0315a71bc09997943db6609/ab24/fe63/tmp9gyf1ewt/HG01123.1.gaf.unstable -l /data/tmp/0a9f88a4b0315a71bc09997943db6609/ab24/fe63/tmp9gyf1ewt/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:16:46.706545: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/0a9f88a4b0315a71bc09997943db6609/ab24/fe63/tmp9gyf1ewt/HG01123.1.gaf.unstable -l /data/tmp/0a9f88a4b0315a71bc09997943db6609/ab24/fe63/tmp9gyf1ewt/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.317 seconds and 46.1 Mi memory with job-memory 184.5 Gi. Percent utilization: 0.02438
2023-07-05 12:16:57.020954: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/fb6bb230be1f50648d9c685404953bb7/8657/51e9/tmpsvevghqd/mg.gfa /data/tmp/fb6bb230be1f50648d9c685404953bb7/8657/51e9/tmpsvevghqd/HG00438.1.fa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/8657/51e9/tmpsvevghqd/HG00438.1.gaf -c -xasm -t 16'" in 1155.5019 seconds and 49.0 Gi memory with job-memory 185.1 Gi. Percent utilization: 26.45
2023-07-05 12:16:57.021619: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/fb6bb230be1f50648d9c685404953bb7/8657/51e9/tmpsvevghqd/HG00438.1.gaf -g /data/tmp/fb6bb230be1f50648d9c685404953bb7/8657/51e9/tmpsvevghqd/mg.gfa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/8657/51e9/tmpsvevghqd/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:17:03.358614: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1bf2/6e1c/tmpwtfm9vrz/HG01358.2.gaf -g /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1bf2/6e1c/tmpwtfm9vrz/mg.gfa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1bf2/6e1c/tmpwtfm9vrz/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 25.4732 seconds and 3.2 Gi memory with job-memory 185.4 Gi. Percent utilization: 1.701
2023-07-05 12:17:03.359159: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1bf2/6e1c/tmpwtfm9vrz/HG01358.2.gaf.unstable -l /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1bf2/6e1c/tmpwtfm9vrz/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:17:03.573818: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac33/7b9f/tmp8pmb2ff8/HG03486.2.gaf -g /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac33/7b9f/tmp8pmb2ff8/mg.gfa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac33/7b9f/tmp8pmb2ff8/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 26.5196 seconds and 3.2 Gi memory with job-memory 185.7 Gi. Percent utilization: 1.698
2023-07-05 12:17:03.574448: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac33/7b9f/tmp8pmb2ff8/HG03486.2.gaf.unstable -l /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac33/7b9f/tmp8pmb2ff8/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:17:03.840146: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/fb6bb230be1f50648d9c685404953bb7/0924/01df/tmpdcz1cfr2/HG00438.2.gaf -g /data/tmp/fb6bb230be1f50648d9c685404953bb7/0924/01df/tmpdcz1cfr2/mg.gfa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/0924/01df/tmpdcz1cfr2/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.6877 seconds and 3.2 Gi memory with job-memory 185.8 Gi. Percent utilization: 1.697
2023-07-05 12:17:03.840542: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/fb6bb230be1f50648d9c685404953bb7/0924/01df/tmpdcz1cfr2/HG00438.2.gaf.unstable -l /data/tmp/fb6bb230be1f50648d9c685404953bb7/0924/01df/tmpdcz1cfr2/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:17:05.921692: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1bf2/6e1c/tmpwtfm9vrz/HG01358.2.gaf.unstable -l /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1bf2/6e1c/tmpwtfm9vrz/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.5614 seconds and 44.5 Mi memory with job-memory 185.4 Gi. Percent utilization: 0.02346
2023-07-05 12:17:06.267918: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac33/7b9f/tmp8pmb2ff8/HG03486.2.gaf.unstable -l /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac33/7b9f/tmp8pmb2ff8/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.6923 seconds and 42.5 Mi memory with job-memory 185.7 Gi. Percent utilization: 0.02234
2023-07-05 12:17:06.289237: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/fb6bb230be1f50648d9c685404953bb7/0924/01df/tmpdcz1cfr2/HG00438.2.gaf.unstable -l /data/tmp/fb6bb230be1f50648d9c685404953bb7/0924/01df/tmpdcz1cfr2/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.4477 seconds and 46.0 Mi memory with job-memory 185.8 Gi. Percent utilization: 0.02419
2023-07-05 12:17:08.002307: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2755/6a72/tmphbw4o4gd/HG02630.1.gaf -g /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2755/6a72/tmphbw4o4gd/mg.gfa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2755/6a72/tmphbw4o4gd/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.6963 seconds and 3.2 Gi memory with job-memory 186.8 Gi. Percent utilization: 1.688
2023-07-05 12:17:08.002897: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2755/6a72/tmphbw4o4gd/HG02630.1.gaf.unstable -l /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2755/6a72/tmphbw4o4gd/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:17:08.420423: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/2a95a9ee729755068515bad92da082de/924b/5c54/tmpl1f6atu0/HG02055.1.gaf -g /data/tmp/2a95a9ee729755068515bad92da082de/924b/5c54/tmpl1f6atu0/mg.gfa -o /data/tmp/2a95a9ee729755068515bad92da082de/924b/5c54/tmpl1f6atu0/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.6467 seconds and 3.2 Gi memory with job-memory 180.6 Gi. Percent utilization: 1.746
2023-07-05 12:17:08.421051: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/2a95a9ee729755068515bad92da082de/924b/5c54/tmpl1f6atu0/HG02055.1.gaf.unstable -l /data/tmp/2a95a9ee729755068515bad92da082de/924b/5c54/tmpl1f6atu0/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:17:10.750679: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2755/6a72/tmphbw4o4gd/HG02630.1.gaf.unstable -l /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2755/6a72/tmphbw4o4gd/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.7466 seconds and 42.1 Mi memory with job-memory 186.8 Gi. Percent utilization: 0.022
2023-07-05 12:17:10.847330: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8052/d4b8/tmpdzvjim0n/mg.gfa /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8052/d4b8/tmpdzvjim0n/HG02622.1.fa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8052/d4b8/tmpdzvjim0n/HG02622.1.gaf -c -xasm -t 16'" in 1218.7497 seconds and 50.5 Gi memory with job-memory 186.3 Gi. Percent utilization: 27.12
2023-07-05 12:17:10.848022: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8052/d4b8/tmpdzvjim0n/HG02622.1.gaf -g /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8052/d4b8/tmpdzvjim0n/mg.gfa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8052/d4b8/tmpdzvjim0n/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:17:11.737822: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/2a95a9ee729755068515bad92da082de/924b/5c54/tmpl1f6atu0/HG02055.1.gaf.unstable -l /data/tmp/2a95a9ee729755068515bad92da082de/924b/5c54/tmpl1f6atu0/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 3.3156 seconds and 43.2 Mi memory with job-memory 180.6 Gi. Percent utilization: 0.02338
2023-07-05 12:17:21.843167: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/fb6bb230be1f50648d9c685404953bb7/8657/51e9/tmpsvevghqd/HG00438.1.gaf -g /data/tmp/fb6bb230be1f50648d9c685404953bb7/8657/51e9/tmpsvevghqd/mg.gfa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/8657/51e9/tmpsvevghqd/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.8204 seconds and 3.2 Gi memory with job-memory 185.1 Gi. Percent utilization: 1.703
2023-07-05 12:17:21.843697: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/fb6bb230be1f50648d9c685404953bb7/8657/51e9/tmpsvevghqd/HG00438.1.gaf.unstable -l /data/tmp/fb6bb230be1f50648d9c685404953bb7/8657/51e9/tmpsvevghqd/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:17:24.328789: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/fb6bb230be1f50648d9c685404953bb7/8657/51e9/tmpsvevghqd/HG00438.1.gaf.unstable -l /data/tmp/fb6bb230be1f50648d9c685404953bb7/8657/51e9/tmpsvevghqd/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.4839 seconds and 43.9 Mi memory with job-memory 185.1 Gi. Percent utilization: 0.02315
2023-07-05 12:17:28.375588: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/27bafead6d355b998e86173ec3f6a1a4/da9d/dbc3/tmp7kj02h4b/mg.gfa /data/tmp/27bafead6d355b998e86173ec3f6a1a4/da9d/dbc3/tmp7kj02h4b/HG00735.2.fa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/da9d/dbc3/tmp7kj02h4b/HG00735.2.gaf -c -xasm -t 16'" in 1236.0159 seconds and 51.9 Gi memory with job-memory 185.9 Gi. Percent utilization: 27.9
2023-07-05 12:17:28.376301: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/27bafead6d355b998e86173ec3f6a1a4/da9d/dbc3/tmp7kj02h4b/HG00735.2.gaf -g /data/tmp/27bafead6d355b998e86173ec3f6a1a4/da9d/dbc3/tmp7kj02h4b/mg.gfa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/da9d/dbc3/tmp7kj02h4b/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:17:35.179279: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8052/d4b8/tmpdzvjim0n/HG02622.1.gaf -g /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8052/d4b8/tmpdzvjim0n/mg.gfa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8052/d4b8/tmpdzvjim0n/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.3302 seconds and 3.2 Gi memory with job-memory 186.3 Gi. Percent utilization: 1.693
2023-07-05 12:17:35.179837: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8052/d4b8/tmpdzvjim0n/HG02622.1.gaf.unstable -l /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8052/d4b8/tmpdzvjim0n/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:17:36.256123: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/0a9f88a4b0315a71bc09997943db6609/4fa2/0cea/tmp6j0x900_/mg.gfa /data/tmp/0a9f88a4b0315a71bc09997943db6609/4fa2/0cea/tmp6j0x900_/HG01358.1.fa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/4fa2/0cea/tmp6j0x900_/HG01358.1.gaf -c -xasm -t 16'" in 1197.0551 seconds and 47.8 Gi memory with job-memory 179.6 Gi. Percent utilization: 26.59
2023-07-05 12:17:36.256820: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/0a9f88a4b0315a71bc09997943db6609/4fa2/0cea/tmp6j0x900_/HG01358.1.gaf -g /data/tmp/0a9f88a4b0315a71bc09997943db6609/4fa2/0cea/tmp6j0x900_/mg.gfa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/4fa2/0cea/tmp6j0x900_/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:17:37.926222: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8052/d4b8/tmpdzvjim0n/HG02622.1.gaf.unstable -l /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8052/d4b8/tmpdzvjim0n/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.7452 seconds and 46.6 Mi memory with job-memory 186.3 Gi. Percent utilization: 0.02444
2023-07-05 12:17:50.730454: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/27bafead6d355b998e86173ec3f6a1a4/9012/a272/tmpyhhcbidl/mg.gfa /data/tmp/27bafead6d355b998e86173ec3f6a1a4/9012/a272/tmpyhhcbidl/HG01175.2.fa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/9012/a272/tmpyhhcbidl/HG01175.2.gaf -c -xasm -t 16'" in 1258.569 seconds and 44.0 Gi memory with job-memory 185.5 Gi. Percent utilization: 23.74
2023-07-05 12:17:50.731166: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/27bafead6d355b998e86173ec3f6a1a4/9012/a272/tmpyhhcbidl/HG01175.2.gaf -g /data/tmp/27bafead6d355b998e86173ec3f6a1a4/9012/a272/tmpyhhcbidl/mg.gfa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/9012/a272/tmpyhhcbidl/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:17:53.039236: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/27bafead6d355b998e86173ec3f6a1a4/da9d/dbc3/tmp7kj02h4b/HG00735.2.gaf -g /data/tmp/27bafead6d355b998e86173ec3f6a1a4/da9d/dbc3/tmp7kj02h4b/mg.gfa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/da9d/dbc3/tmp7kj02h4b/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.6617 seconds and 3.2 Gi memory with job-memory 185.9 Gi. Percent utilization: 1.696
2023-07-05 12:17:53.039773: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/27bafead6d355b998e86173ec3f6a1a4/da9d/dbc3/tmp7kj02h4b/HG00735.2.gaf.unstable -l /data/tmp/27bafead6d355b998e86173ec3f6a1a4/da9d/dbc3/tmp7kj02h4b/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:17:55.596999: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/27bafead6d355b998e86173ec3f6a1a4/da9d/dbc3/tmp7kj02h4b/HG00735.2.gaf.unstable -l /data/tmp/27bafead6d355b998e86173ec3f6a1a4/da9d/dbc3/tmp7kj02h4b/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.556 seconds and 44.3 Mi memory with job-memory 185.9 Gi. Percent utilization: 0.02326
2023-07-05 12:18:00.240574: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/0a9f88a4b0315a71bc09997943db6609/4fa2/0cea/tmp6j0x900_/HG01358.1.gaf -g /data/tmp/0a9f88a4b0315a71bc09997943db6609/4fa2/0cea/tmp6j0x900_/mg.gfa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/4fa2/0cea/tmp6j0x900_/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 23.9825 seconds and 3.2 Gi memory with job-memory 179.6 Gi. Percent utilization: 1.756
2023-07-05 12:18:00.241130: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/0a9f88a4b0315a71bc09997943db6609/4fa2/0cea/tmp6j0x900_/HG01358.1.gaf.unstable -l /data/tmp/0a9f88a4b0315a71bc09997943db6609/4fa2/0cea/tmp6j0x900_/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:18:01.387672: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8f2b/0d1e/tmp8eg6x5pk/mg.gfa /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8f2b/0d1e/tmp8eg6x5pk/HG02257.2.fa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8f2b/0d1e/tmp8eg6x5pk/HG02257.2.gaf -c -xasm -t 16'" in 1352.4997 seconds and 52.7 Gi memory with job-memory 185.5 Gi. Percent utilization: 28.39
2023-07-05 12:18:01.388368: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8f2b/0d1e/tmp8eg6x5pk/HG02257.2.gaf -g /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8f2b/0d1e/tmp8eg6x5pk/mg.gfa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8f2b/0d1e/tmp8eg6x5pk/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:18:03.139504: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/0a9f88a4b0315a71bc09997943db6609/4fa2/0cea/tmp6j0x900_/HG01358.1.gaf.unstable -l /data/tmp/0a9f88a4b0315a71bc09997943db6609/4fa2/0cea/tmp6j0x900_/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.8972 seconds and 44.0 Mi memory with job-memory 179.6 Gi. Percent utilization: 0.02391
2023-07-05 12:18:14.781149: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/27bafead6d355b998e86173ec3f6a1a4/9012/a272/tmpyhhcbidl/HG01175.2.gaf -g /data/tmp/27bafead6d355b998e86173ec3f6a1a4/9012/a272/tmpyhhcbidl/mg.gfa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/9012/a272/tmpyhhcbidl/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.0487 seconds and 3.2 Gi memory with job-memory 185.5 Gi. Percent utilization: 1.7
2023-07-05 12:18:14.781749: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/27bafead6d355b998e86173ec3f6a1a4/9012/a272/tmpyhhcbidl/HG01175.2.gaf.unstable -l /data/tmp/27bafead6d355b998e86173ec3f6a1a4/9012/a272/tmpyhhcbidl/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:18:17.411377: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/27bafead6d355b998e86173ec3f6a1a4/9012/a272/tmpyhhcbidl/HG01175.2.gaf.unstable -l /data/tmp/27bafead6d355b998e86173ec3f6a1a4/9012/a272/tmpyhhcbidl/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.6285 seconds and 45.4 Mi memory with job-memory 185.5 Gi. Percent utilization: 0.02392
2023-07-05 12:18:26.296372: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8f2b/0d1e/tmp8eg6x5pk/HG02257.2.gaf -g /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8f2b/0d1e/tmp8eg6x5pk/mg.gfa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8f2b/0d1e/tmp8eg6x5pk/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.9069 seconds and 3.2 Gi memory with job-memory 185.5 Gi. Percent utilization: 1.7
2023-07-05 12:18:26.296958: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8f2b/0d1e/tmp8eg6x5pk/HG02257.2.gaf.unstable -l /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8f2b/0d1e/tmp8eg6x5pk/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:18:28.996925: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8f2b/0d1e/tmp8eg6x5pk/HG02257.2.gaf.unstable -l /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8f2b/0d1e/tmp8eg6x5pk/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.6988 seconds and 46.1 Mi memory with job-memory 185.5 Gi. Percent utilization: 0.02426
2023-07-05 12:18:35.632328: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4bc3/a745/tmpwsvvk2f3/mg.gfa /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4bc3/a745/tmpwsvvk2f3/HG02630.2.fa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4bc3/a745/tmpwsvvk2f3/HG02630.2.gaf -c -xasm -t 16'" in 1255.686 seconds and 42.7 Gi memory with job-memory 186.2 Gi. Percent utilization: 22.94
2023-07-05 12:18:35.633020: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4bc3/a745/tmpwsvvk2f3/HG02630.2.gaf -g /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4bc3/a745/tmpwsvvk2f3/mg.gfa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4bc3/a745/tmpwsvvk2f3/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:18:57.563656: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c231/98b8/tmpptsh7l9b/mg.gfa /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c231/98b8/tmpptsh7l9b/HG01109.2.fa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c231/98b8/tmpptsh7l9b/HG01109.2.gaf -c -xasm -t 16'" in 1403.5265 seconds and 41.2 Gi memory with job-memory 185.8 Gi. Percent utilization: 22.16
2023-07-05 12:18:57.564339: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c231/98b8/tmpptsh7l9b/HG01109.2.gaf -g /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c231/98b8/tmpptsh7l9b/mg.gfa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c231/98b8/tmpptsh7l9b/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:18:59.950423: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4bc3/a745/tmpwsvvk2f3/HG02630.2.gaf -g /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4bc3/a745/tmpwsvvk2f3/mg.gfa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4bc3/a745/tmpwsvvk2f3/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.3163 seconds and 3.2 Gi memory with job-memory 186.2 Gi. Percent utilization: 1.694
2023-07-05 12:18:59.950965: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4bc3/a745/tmpwsvvk2f3/HG02630.2.gaf.unstable -l /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4bc3/a745/tmpwsvvk2f3/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:19:02.649221: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4bc3/a745/tmpwsvvk2f3/HG02630.2.gaf.unstable -l /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4bc3/a745/tmpwsvvk2f3/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.6972 seconds and 42.7 Mi memory with job-memory 186.2 Gi. Percent utilization: 0.02238
2023-07-05 12:19:11.686706: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a834/1c4e/tmpzbi_fzdd/mg.gfa /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a834/1c4e/tmpzbi_fzdd/HG00733.1.fa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a834/1c4e/tmpzbi_fzdd/HG00733.1.gaf -c -xasm -t 16'" in 1368.4278 seconds and 47.9 Gi memory with job-memory 186.2 Gi. Percent utilization: 25.73
2023-07-05 12:19:11.687440: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a834/1c4e/tmpzbi_fzdd/HG00733.1.gaf -g /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a834/1c4e/tmpzbi_fzdd/mg.gfa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a834/1c4e/tmpzbi_fzdd/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:19:19.083994: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c231/98b8/tmpptsh7l9b/HG01109.2.gaf -g /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c231/98b8/tmpptsh7l9b/mg.gfa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c231/98b8/tmpptsh7l9b/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 21.5184 seconds and 3.2 Gi memory with job-memory 185.8 Gi. Percent utilization: 1.698
2023-07-05 12:19:19.084583: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c231/98b8/tmpptsh7l9b/HG01109.2.gaf.unstable -l /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c231/98b8/tmpptsh7l9b/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:19:21.648931: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c231/98b8/tmpptsh7l9b/HG01109.2.gaf.unstable -l /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c231/98b8/tmpptsh7l9b/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.5632 seconds and 39.4 Mi memory with job-memory 185.8 Gi. Percent utilization: 0.0207
2023-07-05 12:19:23.193854: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/2a95a9ee729755068515bad92da082de/7d32/ea1f/tmpxuq7d50m/mg.gfa /data/tmp/2a95a9ee729755068515bad92da082de/7d32/ea1f/tmpxuq7d50m/HG01928.2.fa -o /data/tmp/2a95a9ee729755068515bad92da082de/7d32/ea1f/tmpxuq7d50m/HG01928.2.gaf -c -xasm -t 16'" in 1351.2872 seconds and 52.5 Gi memory with job-memory 185.2 Gi. Percent utilization: 28.37
2023-07-05 12:19:23.194652: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/2a95a9ee729755068515bad92da082de/7d32/ea1f/tmpxuq7d50m/HG01928.2.gaf -g /data/tmp/2a95a9ee729755068515bad92da082de/7d32/ea1f/tmpxuq7d50m/mg.gfa -o /data/tmp/2a95a9ee729755068515bad92da082de/7d32/ea1f/tmpxuq7d50m/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:19:35.959846: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a834/1c4e/tmpzbi_fzdd/HG00733.1.gaf -g /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a834/1c4e/tmpzbi_fzdd/mg.gfa -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a834/1c4e/tmpzbi_fzdd/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.2711 seconds and 3.2 Gi memory with job-memory 186.2 Gi. Percent utilization: 1.694
2023-07-05 12:19:35.960471: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a834/1c4e/tmpzbi_fzdd/HG00733.1.gaf.unstable -l /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a834/1c4e/tmpzbi_fzdd/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:19:38.534720: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a834/1c4e/tmpzbi_fzdd/HG00733.1.gaf.unstable -l /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a834/1c4e/tmpzbi_fzdd/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.573 seconds and 44.8 Mi memory with job-memory 186.2 Gi. Percent utilization: 0.0235
2023-07-05 12:19:48.055068: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/2a95a9ee729755068515bad92da082de/7d32/ea1f/tmpxuq7d50m/HG01928.2.gaf -g /data/tmp/2a95a9ee729755068515bad92da082de/7d32/ea1f/tmpxuq7d50m/mg.gfa -o /data/tmp/2a95a9ee729755068515bad92da082de/7d32/ea1f/tmpxuq7d50m/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.8591 seconds and 3.2 Gi memory with job-memory 185.2 Gi. Percent utilization: 1.703
2023-07-05 12:19:48.055698: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/2a95a9ee729755068515bad92da082de/7d32/ea1f/tmpxuq7d50m/HG01928.2.gaf.unstable -l /data/tmp/2a95a9ee729755068515bad92da082de/7d32/ea1f/tmpxuq7d50m/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:19:50.509687: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/2a95a9ee729755068515bad92da082de/7d32/ea1f/tmpxuq7d50m/HG01928.2.gaf.unstable -l /data/tmp/2a95a9ee729755068515bad92da082de/7d32/ea1f/tmpxuq7d50m/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.4527 seconds and 45.6 Mi memory with job-memory 185.2 Gi. Percent utilization: 0.02403
2023-07-05 12:20:09.380407: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/9eeeec3d467250f1999ba98b3759d207/e03b/7701/tmplhpi3crq/mg.gfa /data/tmp/9eeeec3d467250f1999ba98b3759d207/e03b/7701/tmplhpi3crq/HG00621.2.fa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/e03b/7701/tmplhpi3crq/HG00621.2.gaf -c -xasm -t 16'" in 1400.552 seconds and 48.6 Gi memory with job-memory 185.0 Gi. Percent utilization: 26.26
2023-07-05 12:20:09.381047: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/9eeeec3d467250f1999ba98b3759d207/e03b/7701/tmplhpi3crq/HG00621.2.gaf -g /data/tmp/9eeeec3d467250f1999ba98b3759d207/e03b/7701/tmplhpi3crq/mg.gfa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/e03b/7701/tmplhpi3crq/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:20:33.304616: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/fb6bb230be1f50648d9c685404953bb7/757b/6d39/tmpl1sgv74v/mg.gfa /data/tmp/fb6bb230be1f50648d9c685404953bb7/757b/6d39/tmpl1sgv74v/HG02723.1.fa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/757b/6d39/tmpl1sgv74v/HG02723.1.gaf -c -xasm -t 16'" in 1371.69 seconds and 40.6 Gi memory with job-memory 186.6 Gi. Percent utilization: 21.75
2023-07-05 12:20:33.305392: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/fb6bb230be1f50648d9c685404953bb7/757b/6d39/tmpl1sgv74v/HG02723.1.gaf -g /data/tmp/fb6bb230be1f50648d9c685404953bb7/757b/6d39/tmpl1sgv74v/mg.gfa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/757b/6d39/tmpl1sgv74v/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:20:33.825717: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/9eeeec3d467250f1999ba98b3759d207/e03b/7701/tmplhpi3crq/HG00621.2.gaf -g /data/tmp/9eeeec3d467250f1999ba98b3759d207/e03b/7701/tmplhpi3crq/mg.gfa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/e03b/7701/tmplhpi3crq/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.4435 seconds and 3.2 Gi memory with job-memory 185.0 Gi. Percent utilization: 1.705
2023-07-05 12:20:33.826252: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/9eeeec3d467250f1999ba98b3759d207/e03b/7701/tmplhpi3crq/HG00621.2.gaf.unstable -l /data/tmp/9eeeec3d467250f1999ba98b3759d207/e03b/7701/tmplhpi3crq/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:20:36.265900: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/9eeeec3d467250f1999ba98b3759d207/e03b/7701/tmplhpi3crq/HG00621.2.gaf.unstable -l /data/tmp/9eeeec3d467250f1999ba98b3759d207/e03b/7701/tmplhpi3crq/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.4385 seconds and 45.1 Mi memory with job-memory 185.0 Gi. Percent utilization: 0.02378
2023-07-05 12:20:51.533054: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/fb6bb230be1f50648d9c685404953bb7/22c0/ae21/tmp1imglqto/mg.gfa /data/tmp/fb6bb230be1f50648d9c685404953bb7/22c0/ae21/tmp1imglqto/HG02080.2.fa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/22c0/ae21/tmp1imglqto/HG02080.2.gaf -c -xasm -t 16'" in 1389.9899 seconds and 42.5 Gi memory with job-memory 185.6 Gi. Percent utilization: 22.92
2023-07-05 12:20:51.533813: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/fb6bb230be1f50648d9c685404953bb7/22c0/ae21/tmp1imglqto/HG02080.2.gaf -g /data/tmp/fb6bb230be1f50648d9c685404953bb7/22c0/ae21/tmp1imglqto/mg.gfa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/22c0/ae21/tmp1imglqto/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:20:55.172643: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e90b/6a1d/tmpe01ar9qi/mg.gfa /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e90b/6a1d/tmpe01ar9qi/HG03540.2.fa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e90b/6a1d/tmpe01ar9qi/HG03540.2.gaf -c -xasm -t 16'" in 1395.4428 seconds and 42.6 Gi memory with job-memory 186.6 Gi. Percent utilization: 22.81
2023-07-05 12:20:55.173355: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e90b/6a1d/tmpe01ar9qi/HG03540.2.gaf -g /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e90b/6a1d/tmpe01ar9qi/mg.gfa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e90b/6a1d/tmpe01ar9qi/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:20:57.682784: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/fb6bb230be1f50648d9c685404953bb7/757b/6d39/tmpl1sgv74v/HG02723.1.gaf -g /data/tmp/fb6bb230be1f50648d9c685404953bb7/757b/6d39/tmpl1sgv74v/mg.gfa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/757b/6d39/tmpl1sgv74v/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.3761 seconds and 3.2 Gi memory with job-memory 186.6 Gi. Percent utilization: 1.69
2023-07-05 12:20:57.683410: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/fb6bb230be1f50648d9c685404953bb7/757b/6d39/tmpl1sgv74v/HG02723.1.gaf.unstable -l /data/tmp/fb6bb230be1f50648d9c685404953bb7/757b/6d39/tmpl1sgv74v/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:20:58.311700: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/9fd0f61929a456269b41669e7d9612f5/b551/ef41/tmpfeop8eew/mg.gfa /data/tmp/9fd0f61929a456269b41669e7d9612f5/b551/ef41/tmpfeop8eew/HG02622.2.fa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/b551/ef41/tmpfeop8eew/HG02622.2.gaf -c -xasm -t 16'" in 1397.316 seconds and 53.1 Gi memory with job-memory 186.4 Gi. Percent utilization: 28.49
2023-07-05 12:20:58.312398: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/9fd0f61929a456269b41669e7d9612f5/b551/ef41/tmpfeop8eew/HG02622.2.gaf -g /data/tmp/9fd0f61929a456269b41669e7d9612f5/b551/ef41/tmpfeop8eew/mg.gfa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/b551/ef41/tmpfeop8eew/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:21:00.483901: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/fb6bb230be1f50648d9c685404953bb7/757b/6d39/tmpl1sgv74v/HG02723.1.gaf.unstable -l /data/tmp/fb6bb230be1f50648d9c685404953bb7/757b/6d39/tmpl1sgv74v/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.7993 seconds and 41.7 Mi memory with job-memory 186.6 Gi. Percent utilization: 0.02182
2023-07-05 12:21:15.777486: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/fb6bb230be1f50648d9c685404953bb7/22c0/ae21/tmp1imglqto/HG02080.2.gaf -g /data/tmp/fb6bb230be1f50648d9c685404953bb7/22c0/ae21/tmp1imglqto/mg.gfa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/22c0/ae21/tmp1imglqto/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.2424 seconds and 3.2 Gi memory with job-memory 185.6 Gi. Percent utilization: 1.699
2023-07-05 12:21:15.778085: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/fb6bb230be1f50648d9c685404953bb7/22c0/ae21/tmp1imglqto/HG02080.2.gaf.unstable -l /data/tmp/fb6bb230be1f50648d9c685404953bb7/22c0/ae21/tmp1imglqto/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:21:18.370020: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/fb6bb230be1f50648d9c685404953bb7/22c0/ae21/tmp1imglqto/HG02080.2.gaf.unstable -l /data/tmp/fb6bb230be1f50648d9c685404953bb7/22c0/ae21/tmp1imglqto/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.5907 seconds and 41.2 Mi memory with job-memory 185.6 Gi. Percent utilization: 0.02167
2023-07-05 12:21:20.582038: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e90b/6a1d/tmpe01ar9qi/HG03540.2.gaf -g /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e90b/6a1d/tmpe01ar9qi/mg.gfa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e90b/6a1d/tmpe01ar9qi/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 25.4075 seconds and 3.2 Gi memory with job-memory 186.6 Gi. Percent utilization: 1.691
2023-07-05 12:21:20.582600: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e90b/6a1d/tmpe01ar9qi/HG03540.2.gaf.unstable -l /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e90b/6a1d/tmpe01ar9qi/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:21:22.765115: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/9eeeec3d467250f1999ba98b3759d207/556e/7872/tmp3w38ph01/mg.gfa /data/tmp/9eeeec3d467250f1999ba98b3759d207/556e/7872/tmp3w38ph01/HG01891.2.fa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/556e/7872/tmp3w38ph01/HG01891.2.gaf -c -xasm -t 16'" in 1474.3969 seconds and 51.9 Gi memory with job-memory 185.0 Gi. Percent utilization: 28.05
2023-07-05 12:21:22.765827: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/9eeeec3d467250f1999ba98b3759d207/556e/7872/tmp3w38ph01/HG01891.2.gaf -g /data/tmp/9eeeec3d467250f1999ba98b3759d207/556e/7872/tmp3w38ph01/mg.gfa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/556e/7872/tmp3w38ph01/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:21:22.827835: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/9fd0f61929a456269b41669e7d9612f5/b551/ef41/tmpfeop8eew/HG02622.2.gaf -g /data/tmp/9fd0f61929a456269b41669e7d9612f5/b551/ef41/tmpfeop8eew/mg.gfa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/b551/ef41/tmpfeop8eew/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.5142 seconds and 3.2 Gi memory with job-memory 186.4 Gi. Percent utilization: 1.692
2023-07-05 12:21:22.828378: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/9fd0f61929a456269b41669e7d9612f5/b551/ef41/tmpfeop8eew/HG02622.2.gaf.unstable -l /data/tmp/9fd0f61929a456269b41669e7d9612f5/b551/ef41/tmpfeop8eew/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:21:23.531379: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e90b/6a1d/tmpe01ar9qi/HG03540.2.gaf.unstable -l /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e90b/6a1d/tmpe01ar9qi/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.9476 seconds and 44.8 Mi memory with job-memory 186.6 Gi. Percent utilization: 0.02345
2023-07-05 12:21:25.689186: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/9fd0f61929a456269b41669e7d9612f5/b551/ef41/tmpfeop8eew/HG02622.2.gaf.unstable -l /data/tmp/9fd0f61929a456269b41669e7d9612f5/b551/ef41/tmpfeop8eew/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.8598 seconds and 53.3 Mi memory with job-memory 186.4 Gi. Percent utilization: 0.02792
2023-07-05 12:21:47.523594: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/9eeeec3d467250f1999ba98b3759d207/556e/7872/tmp3w38ph01/HG01891.2.gaf -g /data/tmp/9eeeec3d467250f1999ba98b3759d207/556e/7872/tmp3w38ph01/mg.gfa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/556e/7872/tmp3w38ph01/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.7566 seconds and 3.2 Gi memory with job-memory 185.0 Gi. Percent utilization: 1.705
2023-07-05 12:21:47.524193: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/9eeeec3d467250f1999ba98b3759d207/556e/7872/tmp3w38ph01/HG01891.2.gaf.unstable -l /data/tmp/9eeeec3d467250f1999ba98b3759d207/556e/7872/tmp3w38ph01/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:21:50.164026: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/9eeeec3d467250f1999ba98b3759d207/556e/7872/tmp3w38ph01/HG01891.2.gaf.unstable -l /data/tmp/9eeeec3d467250f1999ba98b3759d207/556e/7872/tmp3w38ph01/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.6386 seconds and 53.6 Mi memory with job-memory 185.0 Gi. Percent utilization: 0.02827
2023-07-05 12:22:34.892212: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2aeb/9219/tmpb520cubo/mg.gfa /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2aeb/9219/tmpb520cubo/HG03540.1.fa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2aeb/9219/tmpb520cubo/HG03540.1.gaf -c -xasm -t 16'" in 1494.7769 seconds and 44.5 Gi memory with job-memory 187.6 Gi. Percent utilization: 23.73
2023-07-05 12:22:34.892917: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2aeb/9219/tmpb520cubo/HG03540.1.gaf -g /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2aeb/9219/tmpb520cubo/mg.gfa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2aeb/9219/tmpb520cubo/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:22:49.427332: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/35a5/1a75/tmpeppz6jrn/mg.gfa /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/35a5/1a75/tmpeppz6jrn/HG03579.1.fa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/35a5/1a75/tmpeppz6jrn/HG03579.1.gaf -c -xasm -t 16'" in 1511.9021 seconds and 43.0 Gi memory with job-memory 180.5 Gi. Percent utilization: 23.84
2023-07-05 12:22:49.428002: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/35a5/1a75/tmpeppz6jrn/HG03579.1.gaf -g /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/35a5/1a75/tmpeppz6jrn/mg.gfa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/35a5/1a75/tmpeppz6jrn/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:22:59.229650: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2aeb/9219/tmpb520cubo/HG03540.1.gaf -g /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2aeb/9219/tmpb520cubo/mg.gfa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2aeb/9219/tmpb520cubo/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.3356 seconds and 3.2 Gi memory with job-memory 187.6 Gi. Percent utilization: 1.681
2023-07-05 12:22:59.230184: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2aeb/9219/tmpb520cubo/HG03540.1.gaf.unstable -l /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2aeb/9219/tmpb520cubo/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:23:01.956172: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2aeb/9219/tmpb520cubo/HG03540.1.gaf.unstable -l /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2aeb/9219/tmpb520cubo/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.7248 seconds and 40.9 Mi memory with job-memory 187.6 Gi. Percent utilization: 0.02128
2023-07-05 12:23:13.708517: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/35a5/1a75/tmpeppz6jrn/HG03579.1.gaf -g /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/35a5/1a75/tmpeppz6jrn/mg.gfa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/35a5/1a75/tmpeppz6jrn/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.2793 seconds and 3.2 Gi memory with job-memory 180.5 Gi. Percent utilization: 1.748
2023-07-05 12:23:13.709070: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/35a5/1a75/tmpeppz6jrn/HG03579.1.gaf.unstable -l /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/35a5/1a75/tmpeppz6jrn/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:23:13.883318: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/2a95a9ee729755068515bad92da082de/24bd/cec6/tmp9q9n_vwl/mg.gfa /data/tmp/2a95a9ee729755068515bad92da082de/24bd/cec6/tmp9q9n_vwl/NA20129.1.fa -o /data/tmp/2a95a9ee729755068515bad92da082de/24bd/cec6/tmp9q9n_vwl/NA20129.1.gaf -c -xasm -t 16'" in 1581.7476 seconds and 40.5 Gi memory with job-memory 185.4 Gi. Percent utilization: 21.83
2023-07-05 12:23:13.883947: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/2a95a9ee729755068515bad92da082de/24bd/cec6/tmp9q9n_vwl/NA20129.1.gaf -g /data/tmp/2a95a9ee729755068515bad92da082de/24bd/cec6/tmp9q9n_vwl/mg.gfa -o /data/tmp/2a95a9ee729755068515bad92da082de/24bd/cec6/tmp9q9n_vwl/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:23:17.021608: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/35a5/1a75/tmpeppz6jrn/HG03579.1.gaf.unstable -l /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/35a5/1a75/tmpeppz6jrn/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 3.3113 seconds and 45.1 Mi memory with job-memory 180.5 Gi. Percent utilization: 0.02438
2023-07-05 12:23:35.516705: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/fb6bb230be1f50648d9c685404953bb7/46d7/c588/tmpwjc352rf/mg.gfa /data/tmp/fb6bb230be1f50648d9c685404953bb7/46d7/c588/tmpwjc352rf/HG01978.2.fa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/46d7/c588/tmpwjc352rf/HG01978.2.gaf -c -xasm -t 16'" in 1553.8953 seconds and 51.8 Gi memory with job-memory 186.8 Gi. Percent utilization: 27.76
2023-07-05 12:23:35.517482: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/fb6bb230be1f50648d9c685404953bb7/46d7/c588/tmpwjc352rf/HG01978.2.gaf -g /data/tmp/fb6bb230be1f50648d9c685404953bb7/46d7/c588/tmpwjc352rf/mg.gfa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/46d7/c588/tmpwjc352rf/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:23:38.244304: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/2a95a9ee729755068515bad92da082de/24bd/cec6/tmp9q9n_vwl/NA20129.1.gaf -g /data/tmp/2a95a9ee729755068515bad92da082de/24bd/cec6/tmp9q9n_vwl/mg.gfa -o /data/tmp/2a95a9ee729755068515bad92da082de/24bd/cec6/tmp9q9n_vwl/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.3592 seconds and 3.2 Gi memory with job-memory 185.4 Gi. Percent utilization: 1.701
2023-07-05 12:23:38.244816: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/2a95a9ee729755068515bad92da082de/24bd/cec6/tmp9q9n_vwl/NA20129.1.gaf.unstable -l /data/tmp/2a95a9ee729755068515bad92da082de/24bd/cec6/tmp9q9n_vwl/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:23:40.961470: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/2a95a9ee729755068515bad92da082de/24bd/cec6/tmp9q9n_vwl/NA20129.1.gaf.unstable -l /data/tmp/2a95a9ee729755068515bad92da082de/24bd/cec6/tmp9q9n_vwl/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.7156 seconds and 39.6 Mi memory with job-memory 185.4 Gi. Percent utilization: 0.02088
2023-07-05 12:23:41.806443: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/2a95a9ee729755068515bad92da082de/c96a/98de/tmpx3oywv9r/mg.gfa /data/tmp/2a95a9ee729755068515bad92da082de/c96a/98de/tmpx3oywv9r/HG03098.2.fa -o /data/tmp/2a95a9ee729755068515bad92da082de/c96a/98de/tmpx3oywv9r/HG03098.2.gaf -c -xasm -t 16'" in 1609.333 seconds and 51.3 Gi memory with job-memory 187.2 Gi. Percent utilization: 27.41
2023-07-05 12:23:41.807091: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/2a95a9ee729755068515bad92da082de/c96a/98de/tmpx3oywv9r/HG03098.2.gaf -g /data/tmp/2a95a9ee729755068515bad92da082de/c96a/98de/tmpx3oywv9r/mg.gfa -o /data/tmp/2a95a9ee729755068515bad92da082de/c96a/98de/tmpx3oywv9r/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:23:57.176112: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/0a9f88a4b0315a71bc09997943db6609/7aee/ec61/tmpcf4q32nt/mg.gfa /data/tmp/0a9f88a4b0315a71bc09997943db6609/7aee/ec61/tmpcf4q32nt/HG03453.1.fa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/7aee/ec61/tmpcf4q32nt/HG03453.1.gaf -c -xasm -t 16'" in 1576.357 seconds and 42.7 Gi memory with job-memory 186.7 Gi. Percent utilization: 22.88
2023-07-05 12:23:57.176839: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/0a9f88a4b0315a71bc09997943db6609/7aee/ec61/tmpcf4q32nt/HG03453.1.gaf -g /data/tmp/0a9f88a4b0315a71bc09997943db6609/7aee/ec61/tmpcf4q32nt/mg.gfa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/7aee/ec61/tmpcf4q32nt/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:24:00.437733: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/fb6bb230be1f50648d9c685404953bb7/46d7/c588/tmpwjc352rf/HG01978.2.gaf -g /data/tmp/fb6bb230be1f50648d9c685404953bb7/46d7/c588/tmpwjc352rf/mg.gfa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/46d7/c588/tmpwjc352rf/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.9189 seconds and 3.2 Gi memory with job-memory 186.8 Gi. Percent utilization: 1.689
2023-07-05 12:24:00.438350: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/fb6bb230be1f50648d9c685404953bb7/46d7/c588/tmpwjc352rf/HG01978.2.gaf.unstable -l /data/tmp/fb6bb230be1f50648d9c685404953bb7/46d7/c588/tmpwjc352rf/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:24:03.161185: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/fb6bb230be1f50648d9c685404953bb7/46d7/c588/tmpwjc352rf/HG01978.2.gaf.unstable -l /data/tmp/fb6bb230be1f50648d9c685404953bb7/46d7/c588/tmpwjc352rf/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.7216 seconds and 45.7 Mi memory with job-memory 186.8 Gi. Percent utilization: 0.02388
2023-07-05 12:24:05.473494: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/0a9f88a4b0315a71bc09997943db6609/d353/8bbb/tmpctzcfpl7/mg.gfa /data/tmp/0a9f88a4b0315a71bc09997943db6609/d353/8bbb/tmpctzcfpl7/HG01071.1.fa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/d353/8bbb/tmpctzcfpl7/HG01071.1.gaf -c -xasm -t 16'" in 1584.6211 seconds and 54.0 Gi memory with job-memory 187.1 Gi. Percent utilization: 28.84
2023-07-05 12:24:05.474260: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/0a9f88a4b0315a71bc09997943db6609/d353/8bbb/tmpctzcfpl7/HG01071.1.gaf -g /data/tmp/0a9f88a4b0315a71bc09997943db6609/d353/8bbb/tmpctzcfpl7/mg.gfa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/d353/8bbb/tmpctzcfpl7/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:24:06.440414: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/2a95a9ee729755068515bad92da082de/c96a/98de/tmpx3oywv9r/HG03098.2.gaf -g /data/tmp/2a95a9ee729755068515bad92da082de/c96a/98de/tmpx3oywv9r/mg.gfa -o /data/tmp/2a95a9ee729755068515bad92da082de/c96a/98de/tmpx3oywv9r/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.6322 seconds and 3.2 Gi memory with job-memory 187.2 Gi. Percent utilization: 1.685
2023-07-05 12:24:06.440935: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/2a95a9ee729755068515bad92da082de/c96a/98de/tmpx3oywv9r/HG03098.2.gaf.unstable -l /data/tmp/2a95a9ee729755068515bad92da082de/c96a/98de/tmpx3oywv9r/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:24:09.192943: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/2a95a9ee729755068515bad92da082de/c96a/98de/tmpx3oywv9r/HG03098.2.gaf.unstable -l /data/tmp/2a95a9ee729755068515bad92da082de/c96a/98de/tmpx3oywv9r/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.751 seconds and 49.7 Mi memory with job-memory 187.2 Gi. Percent utilization: 0.02592
2023-07-05 12:24:10.980084: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/2a95a9ee729755068515bad92da082de/e351/d4be/tmp6u43gyvv/mg.gfa /data/tmp/2a95a9ee729755068515bad92da082de/e351/d4be/tmp6u43gyvv/CHM13.fa -o /data/tmp/2a95a9ee729755068515bad92da082de/e351/d4be/tmp6u43gyvv/CHM13.gaf -c -xasm -t 16'" in 1638.3188 seconds and 96.3 Gi memory with job-memory 190.4 Gi. Percent utilization: 50.59
2023-07-05 12:24:10.980838: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/2a95a9ee729755068515bad92da082de/e351/d4be/tmp6u43gyvv/CHM13.gaf -g /data/tmp/2a95a9ee729755068515bad92da082de/e351/d4be/tmp6u43gyvv/mg.gfa -o /data/tmp/2a95a9ee729755068515bad92da082de/e351/d4be/tmp6u43gyvv/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:24:20.343279: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/e41d97042ffa55f1a1fc324d5464836c/f77b/9be5/tmpxmi8up7t/mg.gfa /data/tmp/e41d97042ffa55f1a1fc324d5464836c/f77b/9be5/tmpxmi8up7t/HG02717.2.fa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/f77b/9be5/tmpxmi8up7t/HG02717.2.gaf -c -xasm -t 16'" in 1732.8326 seconds and 48.3 Gi memory with job-memory 185.9 Gi. Percent utilization: 25.98
2023-07-05 12:24:20.344251: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/e41d97042ffa55f1a1fc324d5464836c/f77b/9be5/tmpxmi8up7t/HG02717.2.gaf -g /data/tmp/e41d97042ffa55f1a1fc324d5464836c/f77b/9be5/tmpxmi8up7t/mg.gfa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/f77b/9be5/tmpxmi8up7t/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:24:21.823058: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/0a9f88a4b0315a71bc09997943db6609/7aee/ec61/tmpcf4q32nt/HG03453.1.gaf -g /data/tmp/0a9f88a4b0315a71bc09997943db6609/7aee/ec61/tmpcf4q32nt/mg.gfa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/7aee/ec61/tmpcf4q32nt/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.6449 seconds and 3.2 Gi memory with job-memory 186.7 Gi. Percent utilization: 1.689
2023-07-05 12:24:21.823650: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/0a9f88a4b0315a71bc09997943db6609/7aee/ec61/tmpcf4q32nt/HG03453.1.gaf.unstable -l /data/tmp/0a9f88a4b0315a71bc09997943db6609/7aee/ec61/tmpcf4q32nt/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:24:24.635863: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/0a9f88a4b0315a71bc09997943db6609/7aee/ec61/tmpcf4q32nt/HG03453.1.gaf.unstable -l /data/tmp/0a9f88a4b0315a71bc09997943db6609/7aee/ec61/tmpcf4q32nt/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.811 seconds and 40.9 Mi memory with job-memory 186.7 Gi. Percent utilization: 0.02141
2023-07-05 12:24:26.508803: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/9eeeec3d467250f1999ba98b3759d207/d16a/f2dd/tmpqduen2gs/mg.gfa /data/tmp/9eeeec3d467250f1999ba98b3759d207/d16a/f2dd/tmpqduen2gs/HG02055.2.fa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/d16a/f2dd/tmpqduen2gs/HG02055.2.gaf -c -xasm -t 16'" in 1658.219 seconds and 42.8 Gi memory with job-memory 184.8 Gi. Percent utilization: 23.14
2023-07-05 12:24:26.509525: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/9eeeec3d467250f1999ba98b3759d207/d16a/f2dd/tmpqduen2gs/HG02055.2.gaf -g /data/tmp/9eeeec3d467250f1999ba98b3759d207/d16a/f2dd/tmpqduen2gs/mg.gfa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/d16a/f2dd/tmpqduen2gs/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:24:30.099953: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/0a9f88a4b0315a71bc09997943db6609/d353/8bbb/tmpctzcfpl7/HG01071.1.gaf -g /data/tmp/0a9f88a4b0315a71bc09997943db6609/d353/8bbb/tmpctzcfpl7/mg.gfa -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/d353/8bbb/tmpctzcfpl7/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.6244 seconds and 3.2 Gi memory with job-memory 187.1 Gi. Percent utilization: 1.686
2023-07-05 12:24:30.100527: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/0a9f88a4b0315a71bc09997943db6609/d353/8bbb/tmpctzcfpl7/HG01071.1.gaf.unstable -l /data/tmp/0a9f88a4b0315a71bc09997943db6609/d353/8bbb/tmpctzcfpl7/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:24:32.814697: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/0a9f88a4b0315a71bc09997943db6609/d353/8bbb/tmpctzcfpl7/HG01071.1.gaf.unstable -l /data/tmp/0a9f88a4b0315a71bc09997943db6609/d353/8bbb/tmpctzcfpl7/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.7131 seconds and 45.5 Mi memory with job-memory 187.1 Gi. Percent utilization: 0.02374
2023-07-05 12:24:33.307313: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/fb6bb230be1f50648d9c685404953bb7/2d4c/bca7/tmp1cklsx9t/mg.gfa /data/tmp/fb6bb230be1f50648d9c685404953bb7/2d4c/bca7/tmp1cklsx9t/HG01258.2.fa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/2d4c/bca7/tmp1cklsx9t/HG01258.2.gaf -c -xasm -t 16'" in 1611.7303 seconds and 49.1 Gi memory with job-memory 185.6 Gi. Percent utilization: 26.48
2023-07-05 12:24:33.307950: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/fb6bb230be1f50648d9c685404953bb7/2d4c/bca7/tmp1cklsx9t/HG01258.2.gaf -g /data/tmp/fb6bb230be1f50648d9c685404953bb7/2d4c/bca7/tmp1cklsx9t/mg.gfa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/2d4c/bca7/tmp1cklsx9t/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:24:34.995079: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/2a95a9ee729755068515bad92da082de/e351/d4be/tmp6u43gyvv/CHM13.gaf -g /data/tmp/2a95a9ee729755068515bad92da082de/e351/d4be/tmp6u43gyvv/mg.gfa -o /data/tmp/2a95a9ee729755068515bad92da082de/e351/d4be/tmp6u43gyvv/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.013 seconds and 3.2 Gi memory with job-memory 190.4 Gi. Percent utilization: 1.657
2023-07-05 12:24:34.995695: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/2a95a9ee729755068515bad92da082de/e351/d4be/tmp6u43gyvv/CHM13.gaf.unstable -l /data/tmp/2a95a9ee729755068515bad92da082de/e351/d4be/tmp6u43gyvv/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:24:37.475618: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/2a95a9ee729755068515bad92da082de/e351/d4be/tmp6u43gyvv/CHM13.gaf.unstable -l /data/tmp/2a95a9ee729755068515bad92da082de/e351/d4be/tmp6u43gyvv/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.4787 seconds and 50.5 Mi memory with job-memory 190.4 Gi. Percent utilization: 0.02589
2023-07-05 12:24:44.742303: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/e41d97042ffa55f1a1fc324d5464836c/f77b/9be5/tmpxmi8up7t/HG02717.2.gaf -g /data/tmp/e41d97042ffa55f1a1fc324d5464836c/f77b/9be5/tmpxmi8up7t/mg.gfa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/f77b/9be5/tmpxmi8up7t/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.3968 seconds and 3.2 Gi memory with job-memory 185.9 Gi. Percent utilization: 1.696
2023-07-05 12:24:44.742871: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/e41d97042ffa55f1a1fc324d5464836c/f77b/9be5/tmpxmi8up7t/HG02717.2.gaf.unstable -l /data/tmp/e41d97042ffa55f1a1fc324d5464836c/f77b/9be5/tmpxmi8up7t/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:24:47.460041: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/e41d97042ffa55f1a1fc324d5464836c/f77b/9be5/tmpxmi8up7t/HG02717.2.gaf.unstable -l /data/tmp/e41d97042ffa55f1a1fc324d5464836c/f77b/9be5/tmpxmi8up7t/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.716 seconds and 47.1 Mi memory with job-memory 185.9 Gi. Percent utilization: 0.02474
2023-07-05 12:24:51.049020: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/9eeeec3d467250f1999ba98b3759d207/d16a/f2dd/tmpqduen2gs/HG02055.2.gaf -g /data/tmp/9eeeec3d467250f1999ba98b3759d207/d16a/f2dd/tmpqduen2gs/mg.gfa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/d16a/f2dd/tmpqduen2gs/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.5382 seconds and 3.2 Gi memory with job-memory 184.8 Gi. Percent utilization: 1.706
2023-07-05 12:24:51.049608: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/9eeeec3d467250f1999ba98b3759d207/d16a/f2dd/tmpqduen2gs/HG02055.2.gaf.unstable -l /data/tmp/9eeeec3d467250f1999ba98b3759d207/d16a/f2dd/tmpqduen2gs/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:24:53.580786: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/9eeeec3d467250f1999ba98b3759d207/d16a/f2dd/tmpqduen2gs/HG02055.2.gaf.unstable -l /data/tmp/9eeeec3d467250f1999ba98b3759d207/d16a/f2dd/tmpqduen2gs/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.53 seconds and 46.9 Mi memory with job-memory 184.8 Gi. Percent utilization: 0.02476
2023-07-05 12:24:57.674740: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/fb6bb230be1f50648d9c685404953bb7/2d4c/bca7/tmp1cklsx9t/HG01258.2.gaf -g /data/tmp/fb6bb230be1f50648d9c685404953bb7/2d4c/bca7/tmp1cklsx9t/mg.gfa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/2d4c/bca7/tmp1cklsx9t/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.3656 seconds and 3.2 Gi memory with job-memory 185.6 Gi. Percent utilization: 1.699
2023-07-05 12:24:57.675260: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/fb6bb230be1f50648d9c685404953bb7/2d4c/bca7/tmp1cklsx9t/HG01258.2.gaf.unstable -l /data/tmp/fb6bb230be1f50648d9c685404953bb7/2d4c/bca7/tmp1cklsx9t/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:24:59.589636: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/9eeeec3d467250f1999ba98b3759d207/ffbd/b78d/tmpmkzq5wz3/mg.gfa /data/tmp/9eeeec3d467250f1999ba98b3759d207/ffbd/b78d/tmpmkzq5wz3/HG00673.1.fa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/ffbd/b78d/tmpmkzq5wz3/HG00673.1.gaf -c -xasm -t 16'" in 1693.0766 seconds and 43.8 Gi memory with job-memory 179.2 Gi. Percent utilization: 24.45
2023-07-05 12:24:59.590327: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/9eeeec3d467250f1999ba98b3759d207/ffbd/b78d/tmpmkzq5wz3/HG00673.1.gaf -g /data/tmp/9eeeec3d467250f1999ba98b3759d207/ffbd/b78d/tmpmkzq5wz3/mg.gfa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/ffbd/b78d/tmpmkzq5wz3/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:25:00.278335: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/fb6bb230be1f50648d9c685404953bb7/2d4c/bca7/tmp1cklsx9t/HG01258.2.gaf.unstable -l /data/tmp/fb6bb230be1f50648d9c685404953bb7/2d4c/bca7/tmp1cklsx9t/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.602 seconds and 44.3 Mi memory with job-memory 185.6 Gi. Percent utilization: 0.0233
2023-07-05 12:25:22.983445: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/fb6bb230be1f50648d9c685404953bb7/8cda/553c/tmp8stv89vs/mg.gfa /data/tmp/fb6bb230be1f50648d9c685404953bb7/8cda/553c/tmp8stv89vs/HG02886.1.fa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/8cda/553c/tmp8stv89vs/HG02886.1.gaf -c -xasm -t 16'" in 1661.3738 seconds and 41.3 Gi memory with job-memory 186.5 Gi. Percent utilization: 22.15
2023-07-05 12:25:22.984212: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/fb6bb230be1f50648d9c685404953bb7/8cda/553c/tmp8stv89vs/HG02886.1.gaf -g /data/tmp/fb6bb230be1f50648d9c685404953bb7/8cda/553c/tmp8stv89vs/mg.gfa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/8cda/553c/tmp8stv89vs/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:25:24.138587: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/9eeeec3d467250f1999ba98b3759d207/ffbd/b78d/tmpmkzq5wz3/HG00673.1.gaf -g /data/tmp/9eeeec3d467250f1999ba98b3759d207/ffbd/b78d/tmpmkzq5wz3/mg.gfa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/ffbd/b78d/tmpmkzq5wz3/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.547 seconds and 3.2 Gi memory with job-memory 179.2 Gi. Percent utilization: 1.76
2023-07-05 12:25:24.139163: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/9eeeec3d467250f1999ba98b3759d207/ffbd/b78d/tmpmkzq5wz3/HG00673.1.gaf.unstable -l /data/tmp/9eeeec3d467250f1999ba98b3759d207/ffbd/b78d/tmpmkzq5wz3/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:25:26.800635: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b63c/4682/tmp5_0m3zfe/mg.gfa /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b63c/4682/tmp5_0m3zfe/NA21309.2.fa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b63c/4682/tmp5_0m3zfe/NA21309.2.gaf -c -xasm -t 16'" in 1799.3851 seconds and 39.2 Gi memory with job-memory 185.8 Gi. Percent utilization: 21.11
2023-07-05 12:25:26.801331: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b63c/4682/tmp5_0m3zfe/NA21309.2.gaf -g /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b63c/4682/tmp5_0m3zfe/mg.gfa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b63c/4682/tmp5_0m3zfe/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:25:27.100336: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/9eeeec3d467250f1999ba98b3759d207/ffbd/b78d/tmpmkzq5wz3/HG00673.1.gaf.unstable -l /data/tmp/9eeeec3d467250f1999ba98b3759d207/ffbd/b78d/tmpmkzq5wz3/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.9601 seconds and 40.9 Mi memory with job-memory 179.2 Gi. Percent utilization: 0.02231
2023-07-05 12:25:44.304074: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/fb6bb230be1f50648d9c685404953bb7/8cda/553c/tmp8stv89vs/HG02886.1.gaf -g /data/tmp/fb6bb230be1f50648d9c685404953bb7/8cda/553c/tmp8stv89vs/mg.gfa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/8cda/553c/tmp8stv89vs/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 21.3186 seconds and 3.2 Gi memory with job-memory 186.5 Gi. Percent utilization: 1.691
2023-07-05 12:25:44.304665: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/fb6bb230be1f50648d9c685404953bb7/8cda/553c/tmp8stv89vs/HG02886.1.gaf.unstable -l /data/tmp/fb6bb230be1f50648d9c685404953bb7/8cda/553c/tmp8stv89vs/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:25:47.058632: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/fb6bb230be1f50648d9c685404953bb7/8cda/553c/tmp8stv89vs/HG02886.1.gaf.unstable -l /data/tmp/fb6bb230be1f50648d9c685404953bb7/8cda/553c/tmp8stv89vs/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.7529 seconds and 44.3 Mi memory with job-memory 186.5 Gi. Percent utilization: 0.02319
2023-07-05 12:25:49.592968: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b63c/4682/tmp5_0m3zfe/NA21309.2.gaf -g /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b63c/4682/tmp5_0m3zfe/mg.gfa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b63c/4682/tmp5_0m3zfe/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 22.7905 seconds and 3.2 Gi memory with job-memory 185.8 Gi. Percent utilization: 1.697
2023-07-05 12:25:49.593536: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b63c/4682/tmp5_0m3zfe/NA21309.2.gaf.unstable -l /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b63c/4682/tmp5_0m3zfe/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:25:52.275822: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b63c/4682/tmp5_0m3zfe/NA21309.2.gaf.unstable -l /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b63c/4682/tmp5_0m3zfe/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.6811 seconds and 40.6 Mi memory with job-memory 185.8 Gi. Percent utilization: 0.02136
2023-07-05 12:26:05.743779: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/27bafead6d355b998e86173ec3f6a1a4/07d5/ad6b/tmp7ht2u2te/mg.gfa /data/tmp/27bafead6d355b998e86173ec3f6a1a4/07d5/ad6b/tmp7ht2u2te/HG02148.2.fa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/07d5/ad6b/tmp7ht2u2te/HG02148.2.gaf -c -xasm -t 16'" in 1753.383 seconds and 45.2 Gi memory with job-memory 185.8 Gi. Percent utilization: 24.35
2023-07-05 12:26:05.744533: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/27bafead6d355b998e86173ec3f6a1a4/07d5/ad6b/tmp7ht2u2te/HG02148.2.gaf -g /data/tmp/27bafead6d355b998e86173ec3f6a1a4/07d5/ad6b/tmp7ht2u2te/mg.gfa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/07d5/ad6b/tmp7ht2u2te/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:26:14.653479: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f3b9/04f3/tmpy8w039w3/mg.gfa /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f3b9/04f3/tmpy8w039w3/HG00673.2.fa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f3b9/04f3/tmpy8w039w3/HG00673.2.gaf -c -xasm -t 16'" in 1844.3055 seconds and 42.7 Gi memory with job-memory 186.9 Gi. Percent utilization: 22.84
2023-07-05 12:26:14.654137: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f3b9/04f3/tmpy8w039w3/HG00673.2.gaf -g /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f3b9/04f3/tmpy8w039w3/mg.gfa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f3b9/04f3/tmpy8w039w3/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:26:25.992004: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/9fd0f61929a456269b41669e7d9612f5/842c/27ed/tmpra1ye_vp/mg.gfa /data/tmp/9fd0f61929a456269b41669e7d9612f5/842c/27ed/tmpra1ye_vp/HG00741.1.fa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/842c/27ed/tmpra1ye_vp/HG00741.1.gaf -c -xasm -t 16'" in 1725.0653 seconds and 51.3 Gi memory with job-memory 185.4 Gi. Percent utilization: 27.65
2023-07-05 12:26:25.992656: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/9fd0f61929a456269b41669e7d9612f5/842c/27ed/tmpra1ye_vp/HG00741.1.gaf -g /data/tmp/9fd0f61929a456269b41669e7d9612f5/842c/27ed/tmpra1ye_vp/mg.gfa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/842c/27ed/tmpra1ye_vp/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:26:30.042711: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/27bafead6d355b998e86173ec3f6a1a4/07d5/ad6b/tmp7ht2u2te/HG02148.2.gaf -g /data/tmp/27bafead6d355b998e86173ec3f6a1a4/07d5/ad6b/tmp7ht2u2te/mg.gfa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/07d5/ad6b/tmp7ht2u2te/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.2969 seconds and 3.2 Gi memory with job-memory 185.8 Gi. Percent utilization: 1.697
2023-07-05 12:26:30.043301: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/27bafead6d355b998e86173ec3f6a1a4/07d5/ad6b/tmp7ht2u2te/HG02148.2.gaf.unstable -l /data/tmp/27bafead6d355b998e86173ec3f6a1a4/07d5/ad6b/tmp7ht2u2te/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:26:32.721085: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/27bafead6d355b998e86173ec3f6a1a4/07d5/ad6b/tmp7ht2u2te/HG02148.2.gaf.unstable -l /data/tmp/27bafead6d355b998e86173ec3f6a1a4/07d5/ad6b/tmp7ht2u2te/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.6766 seconds and 43.2 Mi memory with job-memory 185.8 Gi. Percent utilization: 0.02273
2023-07-05 12:26:38.657412: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f3b9/04f3/tmpy8w039w3/HG00673.2.gaf -g /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f3b9/04f3/tmpy8w039w3/mg.gfa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f3b9/04f3/tmpy8w039w3/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.002 seconds and 3.2 Gi memory with job-memory 186.9 Gi. Percent utilization: 1.688
2023-07-05 12:26:38.657952: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f3b9/04f3/tmpy8w039w3/HG00673.2.gaf.unstable -l /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f3b9/04f3/tmpy8w039w3/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:26:41.142463: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f3b9/04f3/tmpy8w039w3/HG00673.2.gaf.unstable -l /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f3b9/04f3/tmpy8w039w3/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.4834 seconds and 41.2 Mi memory with job-memory 186.9 Gi. Percent utilization: 0.02153
2023-07-05 12:26:43.785026: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/e80d/1dc5/tmp15vduwy7/mg.gfa /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/e80d/1dc5/tmp15vduwy7/HG02717.1.fa -o /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/e80d/1dc5/tmp15vduwy7/HG02717.1.gaf -c -xasm -t 16'" in 1970.7472 seconds and 47.8 Gi memory with job-memory 180.4 Gi. Percent utilization: 26.48
2023-07-05 12:26:43.785709: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/e80d/1dc5/tmp15vduwy7/HG02717.1.gaf -g /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/e80d/1dc5/tmp15vduwy7/mg.gfa -o /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/e80d/1dc5/tmp15vduwy7/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:26:50.290399: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/9fd0f61929a456269b41669e7d9612f5/842c/27ed/tmpra1ye_vp/HG00741.1.gaf -g /data/tmp/9fd0f61929a456269b41669e7d9612f5/842c/27ed/tmpra1ye_vp/mg.gfa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/842c/27ed/tmpra1ye_vp/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.2965 seconds and 3.2 Gi memory with job-memory 185.4 Gi. Percent utilization: 1.701
2023-07-05 12:26:50.290942: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/9fd0f61929a456269b41669e7d9612f5/842c/27ed/tmpra1ye_vp/HG00741.1.gaf.unstable -l /data/tmp/9fd0f61929a456269b41669e7d9612f5/842c/27ed/tmpra1ye_vp/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:26:52.720197: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/9fd0f61929a456269b41669e7d9612f5/842c/27ed/tmpra1ye_vp/HG00741.1.gaf.unstable -l /data/tmp/9fd0f61929a456269b41669e7d9612f5/842c/27ed/tmpra1ye_vp/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.4282 seconds and 45.1 Mi memory with job-memory 185.4 Gi. Percent utilization: 0.02373
2023-07-05 12:26:55.768042: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/2a95a9ee729755068515bad92da082de/12de/0843/tmppi9pcpm9/mg.gfa /data/tmp/2a95a9ee729755068515bad92da082de/12de/0843/tmppi9pcpm9/HG00741.2.fa -o /data/tmp/2a95a9ee729755068515bad92da082de/12de/0843/tmppi9pcpm9/HG00741.2.gaf -c -xasm -t 16'" in 1803.5114 seconds and 49.3 Gi memory with job-memory 185.8 Gi. Percent utilization: 26.54
2023-07-05 12:26:55.768705: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/2a95a9ee729755068515bad92da082de/12de/0843/tmppi9pcpm9/HG00741.2.gaf -g /data/tmp/2a95a9ee729755068515bad92da082de/12de/0843/tmppi9pcpm9/mg.gfa -o /data/tmp/2a95a9ee729755068515bad92da082de/12de/0843/tmppi9pcpm9/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:27:07.837866: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/e80d/1dc5/tmp15vduwy7/HG02717.1.gaf -g /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/e80d/1dc5/tmp15vduwy7/mg.gfa -o /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/e80d/1dc5/tmp15vduwy7/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.051 seconds and 3.2 Gi memory with job-memory 180.4 Gi. Percent utilization: 1.748
2023-07-05 12:27:07.838439: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/e80d/1dc5/tmp15vduwy7/HG02717.1.gaf.unstable -l /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/e80d/1dc5/tmp15vduwy7/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:27:11.207253: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/e80d/1dc5/tmp15vduwy7/HG02717.1.gaf.unstable -l /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/e80d/1dc5/tmp15vduwy7/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 3.3676 seconds and 45.6 Mi memory with job-memory 180.4 Gi. Percent utilization: 0.02471
2023-07-05 12:27:20.406958: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/2a95a9ee729755068515bad92da082de/12de/0843/tmppi9pcpm9/HG00741.2.gaf -g /data/tmp/2a95a9ee729755068515bad92da082de/12de/0843/tmppi9pcpm9/mg.gfa -o /data/tmp/2a95a9ee729755068515bad92da082de/12de/0843/tmppi9pcpm9/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.6371 seconds and 3.2 Gi memory with job-memory 185.8 Gi. Percent utilization: 1.697
2023-07-05 12:27:20.407496: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/2a95a9ee729755068515bad92da082de/12de/0843/tmppi9pcpm9/HG00741.2.gaf.unstable -l /data/tmp/2a95a9ee729755068515bad92da082de/12de/0843/tmppi9pcpm9/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:27:22.968564: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/2a95a9ee729755068515bad92da082de/12de/0843/tmppi9pcpm9/HG00741.2.gaf.unstable -l /data/tmp/2a95a9ee729755068515bad92da082de/12de/0843/tmppi9pcpm9/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.5599 seconds and 45.1 Mi memory with job-memory 185.8 Gi. Percent utilization: 0.02367
2023-07-05 12:27:27.301499: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/dd85/86f1/tmpocvyho2k/mg.gfa /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/dd85/86f1/tmpocvyho2k/HG01071.2.fa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/dd85/86f1/tmpocvyho2k/HG01071.2.gaf -c -xasm -t 16'" in 1919.6238 seconds and 49.0 Gi memory with job-memory 184.4 Gi. Percent utilization: 26.59
2023-07-05 12:27:27.302159: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/dd85/86f1/tmpocvyho2k/HG01071.2.gaf -g /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/dd85/86f1/tmpocvyho2k/mg.gfa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/dd85/86f1/tmpocvyho2k/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:27:45.805445: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c484/8bc5/tmpflyi7wi1/mg.gfa /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c484/8bc5/tmpflyi7wi1/HG01106.1.fa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c484/8bc5/tmpflyi7wi1/HG01106.1.gaf -c -xasm -t 16'" in 1855.1345 seconds and 52.3 Gi memory with job-memory 179.2 Gi. Percent utilization: 29.18
2023-07-05 12:27:45.806169: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c484/8bc5/tmpflyi7wi1/HG01106.1.gaf -g /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c484/8bc5/tmpflyi7wi1/mg.gfa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c484/8bc5/tmpflyi7wi1/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:27:51.843712: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/dd85/86f1/tmpocvyho2k/HG01071.2.gaf -g /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/dd85/86f1/tmpocvyho2k/mg.gfa -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/dd85/86f1/tmpocvyho2k/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.5404 seconds and 3.2 Gi memory with job-memory 184.4 Gi. Percent utilization: 1.71
2023-07-05 12:27:51.844293: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/dd85/86f1/tmpocvyho2k/HG01071.2.gaf.unstable -l /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/dd85/86f1/tmpocvyho2k/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:27:54.188196: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/dd85/86f1/tmpocvyho2k/HG01071.2.gaf.unstable -l /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/dd85/86f1/tmpocvyho2k/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.3427 seconds and 49.0 Mi memory with job-memory 184.4 Gi. Percent utilization: 0.02596
2023-07-05 12:28:02.459446: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/9eeeec3d467250f1999ba98b3759d207/85c5/1aa7/tmp1nxrvp46/mg.gfa /data/tmp/9eeeec3d467250f1999ba98b3759d207/85c5/1aa7/tmp1nxrvp46/HG00621.1.fa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/85c5/1aa7/tmp1nxrvp46/HG00621.1.gaf -c -xasm -t 16'" in 1877.5327 seconds and 45.6 Gi memory with job-memory 178.0 Gi. Percent utilization: 25.62
2023-07-05 12:28:02.460180: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/9eeeec3d467250f1999ba98b3759d207/85c5/1aa7/tmp1nxrvp46/HG00621.1.gaf -g /data/tmp/9eeeec3d467250f1999ba98b3759d207/85c5/1aa7/tmp1nxrvp46/mg.gfa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/85c5/1aa7/tmp1nxrvp46/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:28:11.249708: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c484/8bc5/tmpflyi7wi1/HG01106.1.gaf -g /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c484/8bc5/tmpflyi7wi1/mg.gfa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c484/8bc5/tmpflyi7wi1/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 25.4424 seconds and 3.2 Gi memory with job-memory 179.2 Gi. Percent utilization: 1.759
2023-07-05 12:28:11.250262: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c484/8bc5/tmpflyi7wi1/HG01106.1.gaf.unstable -l /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c484/8bc5/tmpflyi7wi1/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:28:14.390964: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c484/8bc5/tmpflyi7wi1/HG01106.1.gaf.unstable -l /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c484/8bc5/tmpflyi7wi1/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 3.1395 seconds and 44.0 Mi memory with job-memory 179.2 Gi. Percent utilization: 0.02398
2023-07-05 12:28:26.560041: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/9eeeec3d467250f1999ba98b3759d207/85c5/1aa7/tmp1nxrvp46/HG00621.1.gaf -g /data/tmp/9eeeec3d467250f1999ba98b3759d207/85c5/1aa7/tmp1nxrvp46/mg.gfa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/85c5/1aa7/tmp1nxrvp46/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.0986 seconds and 3.2 Gi memory with job-memory 178.0 Gi. Percent utilization: 1.772
2023-07-05 12:28:26.560634: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/9eeeec3d467250f1999ba98b3759d207/85c5/1aa7/tmp1nxrvp46/HG00621.1.gaf.unstable -l /data/tmp/9eeeec3d467250f1999ba98b3759d207/85c5/1aa7/tmp1nxrvp46/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:28:29.172503: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/9eeeec3d467250f1999ba98b3759d207/85c5/1aa7/tmp1nxrvp46/HG00621.1.gaf.unstable -l /data/tmp/9eeeec3d467250f1999ba98b3759d207/85c5/1aa7/tmp1nxrvp46/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.6107 seconds and 44.3 Mi memory with job-memory 178.0 Gi. Percent utilization: 0.0243
2023-07-05 12:29:29.048586: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/66df/33db/tmpdfp_yotz/mg.gfa /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/66df/33db/tmpdfp_yotz/HG01952.1.fa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/66df/33db/tmpdfp_yotz/HG01952.1.gaf -c -xasm -t 16'" in 1912.2606 seconds and 49.9 Gi memory with job-memory 178.4 Gi. Percent utilization: 27.98
2023-07-05 12:29:29.049289: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/66df/33db/tmpdfp_yotz/HG01952.1.gaf -g /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/66df/33db/tmpdfp_yotz/mg.gfa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/66df/33db/tmpdfp_yotz/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:29:33.834594: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c6e2/73fd/tmpjt93hdgf/mg.gfa /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c6e2/73fd/tmpjt93hdgf/HG00735.1.fa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c6e2/73fd/tmpjt93hdgf/HG00735.1.gaf -c -xasm -t 16'" in 1960.6443 seconds and 58.1 Gi memory with job-memory 185.7 Gi. Percent utilization: 31.3
2023-07-05 12:29:33.835244: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c6e2/73fd/tmpjt93hdgf/HG00735.1.gaf -g /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c6e2/73fd/tmpjt93hdgf/mg.gfa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c6e2/73fd/tmpjt93hdgf/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:29:53.273510: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/66df/33db/tmpdfp_yotz/HG01952.1.gaf -g /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/66df/33db/tmpdfp_yotz/mg.gfa -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/66df/33db/tmpdfp_yotz/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.2229 seconds and 3.2 Gi memory with job-memory 178.4 Gi. Percent utilization: 1.768
2023-07-05 12:29:53.274076: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/66df/33db/tmpdfp_yotz/HG01952.1.gaf.unstable -l /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/66df/33db/tmpdfp_yotz/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:29:55.491075: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/f627/f887/tmpir28j30g/mg.gfa /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/f627/f887/tmpir28j30g/HG02148.1.fa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/f627/f887/tmpir28j30g/HG02148.1.gaf -c -xasm -t 16'" in 1982.4194 seconds and 43.1 Gi memory with job-memory 185.2 Gi. Percent utilization: 23.28
2023-07-05 12:29:55.491769: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/f627/f887/tmpir28j30g/HG02148.1.gaf -g /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/f627/f887/tmpir28j30g/mg.gfa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/f627/f887/tmpir28j30g/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:29:56.193314: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/66df/33db/tmpdfp_yotz/HG01952.1.gaf.unstable -l /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/66df/33db/tmpdfp_yotz/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.9182 seconds and 44.8 Mi memory with job-memory 178.4 Gi. Percent utilization: 0.02452
2023-07-05 12:29:57.755137: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c6e2/73fd/tmpjt93hdgf/HG00735.1.gaf -g /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c6e2/73fd/tmpjt93hdgf/mg.gfa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c6e2/73fd/tmpjt93hdgf/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 23.9187 seconds and 3.2 Gi memory with job-memory 185.7 Gi. Percent utilization: 1.699
2023-07-05 12:29:57.755691: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c6e2/73fd/tmpjt93hdgf/HG00735.1.gaf.unstable -l /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c6e2/73fd/tmpjt93hdgf/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:30:00.176035: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c6e2/73fd/tmpjt93hdgf/HG00735.1.gaf.unstable -l /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c6e2/73fd/tmpjt93hdgf/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.4194 seconds and 48.4 Mi memory with job-memory 185.7 Gi. Percent utilization: 0.02546
2023-07-05 12:30:19.417599: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/f627/f887/tmpir28j30g/HG02148.1.gaf -g /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/f627/f887/tmpir28j30g/mg.gfa -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/f627/f887/tmpir28j30g/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 23.9247 seconds and 3.2 Gi memory with job-memory 185.2 Gi. Percent utilization: 1.703
2023-07-05 12:30:19.418191: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/f627/f887/tmpir28j30g/HG02148.1.gaf.unstable -l /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/f627/f887/tmpir28j30g/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:30:21.825955: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/f627/f887/tmpir28j30g/HG02148.1.gaf.unstable -l /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/f627/f887/tmpir28j30g/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.4066 seconds and 44.8 Mi memory with job-memory 185.2 Gi. Percent utilization: 0.02362
2023-07-05 12:30:55.153182: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/27bafead6d355b998e86173ec3f6a1a4/1462/f0d5/tmpz33ehxck/mg.gfa /data/tmp/27bafead6d355b998e86173ec3f6a1a4/1462/f0d5/tmpz33ehxck/HG02559.2.fa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/1462/f0d5/tmpz33ehxck/HG02559.2.gaf -c -xasm -t 16'" in 2043.1342 seconds and 53.2 Gi memory with job-memory 186.1 Gi. Percent utilization: 28.59
2023-07-05 12:30:55.153911: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/27bafead6d355b998e86173ec3f6a1a4/1462/f0d5/tmpz33ehxck/HG02559.2.gaf -g /data/tmp/27bafead6d355b998e86173ec3f6a1a4/1462/f0d5/tmpz33ehxck/mg.gfa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/1462/f0d5/tmpz33ehxck/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:31:19.680443: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/27bafead6d355b998e86173ec3f6a1a4/1462/f0d5/tmpz33ehxck/HG02559.2.gaf -g /data/tmp/27bafead6d355b998e86173ec3f6a1a4/1462/f0d5/tmpz33ehxck/mg.gfa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/1462/f0d5/tmpz33ehxck/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.5253 seconds and 3.2 Gi memory with job-memory 186.1 Gi. Percent utilization: 1.695
2023-07-05 12:31:19.680994: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/27bafead6d355b998e86173ec3f6a1a4/1462/f0d5/tmpz33ehxck/HG02559.2.gaf.unstable -l /data/tmp/27bafead6d355b998e86173ec3f6a1a4/1462/f0d5/tmpz33ehxck/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:31:22.357388: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/27bafead6d355b998e86173ec3f6a1a4/1462/f0d5/tmpz33ehxck/HG02559.2.gaf.unstable -l /data/tmp/27bafead6d355b998e86173ec3f6a1a4/1462/f0d5/tmpz33ehxck/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.6754 seconds and 51.5 Mi memory with job-memory 186.1 Gi. Percent utilization: 0.02703
2023-07-05 12:32:51.765849: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/9fd0f61929a456269b41669e7d9612f5/8309/4622/tmp82s_6rut/mg.gfa /data/tmp/9fd0f61929a456269b41669e7d9612f5/8309/4622/tmp82s_6rut/HG01952.2.fa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/8309/4622/tmp82s_6rut/HG01952.2.gaf -c -xasm -t 16'" in 2110.9588 seconds and 48.1 Gi memory with job-memory 184.9 Gi. Percent utilization: 25.99
2023-07-05 12:32:51.766561: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/9fd0f61929a456269b41669e7d9612f5/8309/4622/tmp82s_6rut/HG01952.2.gaf -g /data/tmp/9fd0f61929a456269b41669e7d9612f5/8309/4622/tmp82s_6rut/mg.gfa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/8309/4622/tmp82s_6rut/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:33:04.935705: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/9eeeec3d467250f1999ba98b3759d207/0960/5fdf/tmpbq3hsi9h/mg.gfa /data/tmp/9eeeec3d467250f1999ba98b3759d207/0960/5fdf/tmpbq3hsi9h/HG01891.1.fa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/0960/5fdf/tmpbq3hsi9h/HG01891.1.gaf -c -xasm -t 16'" in 2175.9261 seconds and 50.5 Gi memory with job-memory 186.2 Gi. Percent utilization: 27.1
2023-07-05 12:33:04.936334: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/9eeeec3d467250f1999ba98b3759d207/0960/5fdf/tmpbq3hsi9h/HG01891.1.gaf -g /data/tmp/9eeeec3d467250f1999ba98b3759d207/0960/5fdf/tmpbq3hsi9h/mg.gfa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/0960/5fdf/tmpbq3hsi9h/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:33:06.199725: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/9fd0f61929a456269b41669e7d9612f5/ecf6/ee04/tmp4z8_ddj2/mg.gfa /data/tmp/9fd0f61929a456269b41669e7d9612f5/ecf6/ee04/tmp4z8_ddj2/HG02572.2.fa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/ecf6/ee04/tmp4z8_ddj2/HG02572.2.gaf -c -xasm -t 16'" in 2125.1632 seconds and 42.1 Gi memory with job-memory 187.0 Gi. Percent utilization: 22.51
2023-07-05 12:33:06.200366: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/9fd0f61929a456269b41669e7d9612f5/ecf6/ee04/tmp4z8_ddj2/HG02572.2.gaf -g /data/tmp/9fd0f61929a456269b41669e7d9612f5/ecf6/ee04/tmp4z8_ddj2/mg.gfa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/ecf6/ee04/tmp4z8_ddj2/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:33:08.697697: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/2a95a9ee729755068515bad92da082de/4761/3430/tmpn_fvklkk/mg.gfa /data/tmp/2a95a9ee729755068515bad92da082de/4761/3430/tmpn_fvklkk/NA18906.1.fa -o /data/tmp/2a95a9ee729755068515bad92da082de/4761/3430/tmpn_fvklkk/NA18906.1.gaf -c -xasm -t 16'" in 2176.3254 seconds and 47.7 Gi memory with job-memory 186.4 Gi. Percent utilization: 25.59
2023-07-05 12:33:08.698404: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/2a95a9ee729755068515bad92da082de/4761/3430/tmpn_fvklkk/NA18906.1.gaf -g /data/tmp/2a95a9ee729755068515bad92da082de/4761/3430/tmpn_fvklkk/mg.gfa -o /data/tmp/2a95a9ee729755068515bad92da082de/4761/3430/tmpn_fvklkk/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:33:16.004695: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/9fd0f61929a456269b41669e7d9612f5/8309/4622/tmp82s_6rut/HG01952.2.gaf -g /data/tmp/9fd0f61929a456269b41669e7d9612f5/8309/4622/tmp82s_6rut/mg.gfa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/8309/4622/tmp82s_6rut/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.2369 seconds and 3.2 Gi memory with job-memory 184.9 Gi. Percent utilization: 1.706
2023-07-05 12:33:16.005272: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/9fd0f61929a456269b41669e7d9612f5/8309/4622/tmp82s_6rut/HG01952.2.gaf.unstable -l /data/tmp/9fd0f61929a456269b41669e7d9612f5/8309/4622/tmp82s_6rut/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:33:18.257802: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/9fd0f61929a456269b41669e7d9612f5/8309/4622/tmp82s_6rut/HG01952.2.gaf.unstable -l /data/tmp/9fd0f61929a456269b41669e7d9612f5/8309/4622/tmp82s_6rut/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.2514 seconds and 45.1 Mi memory with job-memory 184.9 Gi. Percent utilization: 0.0238
2023-07-05 12:33:18.680474: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/e41d97042ffa55f1a1fc324d5464836c/867a/e769/tmpiwnv5pc5/mg.gfa /data/tmp/e41d97042ffa55f1a1fc324d5464836c/867a/e769/tmpiwnv5pc5/HG02572.1.fa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/867a/e769/tmpiwnv5pc5/HG02572.1.gaf -c -xasm -t 16'" in 2272.4393 seconds and 37.7 Gi memory with job-memory 180.2 Gi. Percent utilization: 20.93
2023-07-05 12:33:18.681139: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/e41d97042ffa55f1a1fc324d5464836c/867a/e769/tmpiwnv5pc5/HG02572.1.gaf -g /data/tmp/e41d97042ffa55f1a1fc324d5464836c/867a/e769/tmpiwnv5pc5/mg.gfa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/867a/e769/tmpiwnv5pc5/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:33:28.814344: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/9eeeec3d467250f1999ba98b3759d207/0960/5fdf/tmpbq3hsi9h/HG01891.1.gaf -g /data/tmp/9eeeec3d467250f1999ba98b3759d207/0960/5fdf/tmpbq3hsi9h/mg.gfa -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/0960/5fdf/tmpbq3hsi9h/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 23.8768 seconds and 3.2 Gi memory with job-memory 186.2 Gi. Percent utilization: 1.693
2023-07-05 12:33:28.814839: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/9eeeec3d467250f1999ba98b3759d207/0960/5fdf/tmpbq3hsi9h/HG01891.1.gaf.unstable -l /data/tmp/9eeeec3d467250f1999ba98b3759d207/0960/5fdf/tmpbq3hsi9h/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:33:29.864497: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/9fd0f61929a456269b41669e7d9612f5/ecf6/ee04/tmp4z8_ddj2/HG02572.2.gaf -g /data/tmp/9fd0f61929a456269b41669e7d9612f5/ecf6/ee04/tmp4z8_ddj2/mg.gfa -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/ecf6/ee04/tmp4z8_ddj2/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 23.6629 seconds and 3.2 Gi memory with job-memory 187.0 Gi. Percent utilization: 1.687
2023-07-05 12:33:29.865060: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/9fd0f61929a456269b41669e7d9612f5/ecf6/ee04/tmp4z8_ddj2/HG02572.2.gaf.unstable -l /data/tmp/9fd0f61929a456269b41669e7d9612f5/ecf6/ee04/tmp4z8_ddj2/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:33:31.332842: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/9eeeec3d467250f1999ba98b3759d207/0960/5fdf/tmpbq3hsi9h/HG01891.1.gaf.unstable -l /data/tmp/9eeeec3d467250f1999ba98b3759d207/0960/5fdf/tmpbq3hsi9h/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.5169 seconds and 47.4 Mi memory with job-memory 186.2 Gi. Percent utilization: 0.02484
2023-07-05 12:33:32.664459: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/9fd0f61929a456269b41669e7d9612f5/ecf6/ee04/tmp4z8_ddj2/HG02572.2.gaf.unstable -l /data/tmp/9fd0f61929a456269b41669e7d9612f5/ecf6/ee04/tmp4z8_ddj2/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.7983 seconds and 45.8 Mi memory with job-memory 187.0 Gi. Percent utilization: 0.02394
2023-07-05 12:33:32.885458: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/2a95a9ee729755068515bad92da082de/4761/3430/tmpn_fvklkk/NA18906.1.gaf -g /data/tmp/2a95a9ee729755068515bad92da082de/4761/3430/tmpn_fvklkk/mg.gfa -o /data/tmp/2a95a9ee729755068515bad92da082de/4761/3430/tmpn_fvklkk/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.1859 seconds and 3.2 Gi memory with job-memory 186.4 Gi. Percent utilization: 1.692
2023-07-05 12:33:32.886008: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/2a95a9ee729755068515bad92da082de/4761/3430/tmpn_fvklkk/NA18906.1.gaf.unstable -l /data/tmp/2a95a9ee729755068515bad92da082de/4761/3430/tmpn_fvklkk/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:33:35.587265: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/2a95a9ee729755068515bad92da082de/4761/3430/tmpn_fvklkk/NA18906.1.gaf.unstable -l /data/tmp/2a95a9ee729755068515bad92da082de/4761/3430/tmpn_fvklkk/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.7001 seconds and 46.6 Mi memory with job-memory 186.4 Gi. Percent utilization: 0.02441
2023-07-05 12:33:42.849152: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/e41d97042ffa55f1a1fc324d5464836c/867a/e769/tmpiwnv5pc5/HG02572.1.gaf -g /data/tmp/e41d97042ffa55f1a1fc324d5464836c/867a/e769/tmpiwnv5pc5/mg.gfa -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/867a/e769/tmpiwnv5pc5/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.1668 seconds and 3.2 Gi memory with job-memory 180.2 Gi. Percent utilization: 1.75
2023-07-05 12:33:42.849693: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/e41d97042ffa55f1a1fc324d5464836c/867a/e769/tmpiwnv5pc5/HG02572.1.gaf.unstable -l /data/tmp/e41d97042ffa55f1a1fc324d5464836c/867a/e769/tmpiwnv5pc5/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:33:46.121534: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/e41d97042ffa55f1a1fc324d5464836c/867a/e769/tmpiwnv5pc5/HG02572.1.gaf.unstable -l /data/tmp/e41d97042ffa55f1a1fc324d5464836c/867a/e769/tmpiwnv5pc5/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 3.2707 seconds and 48.4 Mi memory with job-memory 180.2 Gi. Percent utilization: 0.02622
2023-07-05 12:35:24.153745: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/fb6bb230be1f50648d9c685404953bb7/2a4c/e527/tmpo5qmhoiy/mg.gfa /data/tmp/fb6bb230be1f50648d9c685404953bb7/2a4c/e527/tmpo5qmhoiy/HG02486.2.fa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/2a4c/e527/tmpo5qmhoiy/HG02486.2.gaf -c -xasm -t 16'" in 2262.5756 seconds and 50.6 Gi memory with job-memory 185.5 Gi. Percent utilization: 27.29
2023-07-05 12:35:24.154395: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/fb6bb230be1f50648d9c685404953bb7/2a4c/e527/tmpo5qmhoiy/HG02486.2.gaf -g /data/tmp/fb6bb230be1f50648d9c685404953bb7/2a4c/e527/tmpo5qmhoiy/mg.gfa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/2a4c/e527/tmpo5qmhoiy/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:35:48.585956: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/fb6bb230be1f50648d9c685404953bb7/2a4c/e527/tmpo5qmhoiy/HG02486.2.gaf -g /data/tmp/fb6bb230be1f50648d9c685404953bb7/2a4c/e527/tmpo5qmhoiy/mg.gfa -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/2a4c/e527/tmpo5qmhoiy/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.4304 seconds and 3.2 Gi memory with job-memory 185.5 Gi. Percent utilization: 1.7
2023-07-05 12:35:48.586483: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/fb6bb230be1f50648d9c685404953bb7/2a4c/e527/tmpo5qmhoiy/HG02486.2.gaf.unstable -l /data/tmp/fb6bb230be1f50648d9c685404953bb7/2a4c/e527/tmpo5qmhoiy/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:35:51.300671: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/fb6bb230be1f50648d9c685404953bb7/2a4c/e527/tmpo5qmhoiy/HG02486.2.gaf.unstable -l /data/tmp/fb6bb230be1f50648d9c685404953bb7/2a4c/e527/tmpo5qmhoiy/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.7131 seconds and 46.1 Mi memory with job-memory 185.5 Gi. Percent utilization: 0.02426
2023-07-05 12:43:26.655758: Successfully ran: "bash -c 'set -eo pipefail && minigraph /data/tmp/27bafead6d355b998e86173ec3f6a1a4/fb4e/1495/tmp88321w7q/mg.gfa /data/tmp/27bafead6d355b998e86173ec3f6a1a4/fb4e/1495/tmp88321w7q/HG03492.1.fa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/fb4e/1495/tmp88321w7q/HG03492.1.gaf -c -xasm -t 16'" in 2797.1601 seconds and 37.1 Gi memory with job-memory 179.0 Gi. Percent utilization: 20.7
2023-07-05 12:43:26.656458: Running the command: "bash -c set -eo pipefail && gaf2unstable /data/tmp/27bafead6d355b998e86173ec3f6a1a4/fb4e/1495/tmp88321w7q/HG03492.1.gaf -g /data/tmp/27bafead6d355b998e86173ec3f6a1a4/fb4e/1495/tmp88321w7q/mg.gfa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/fb4e/1495/tmp88321w7q/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5"
2023-07-05 12:43:50.800027: Successfully ran: "bash -c 'set -eo pipefail && gaf2unstable /data/tmp/27bafead6d355b998e86173ec3f6a1a4/fb4e/1495/tmp88321w7q/HG03492.1.gaf -g /data/tmp/27bafead6d355b998e86173ec3f6a1a4/fb4e/1495/tmp88321w7q/mg.gfa -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/fb4e/1495/tmp88321w7q/mg.gfa.node_lengths.tsv | gaffilter - -r 5.0 -m 0.25 -q 5 -b 250000 -o 0 -i 0.5'" in 24.1424 seconds and 3.2 Gi memory with job-memory 179.0 Gi. Percent utilization: 1.761
2023-07-05 12:43:50.800569: Running the command: "bash -c set -eo pipefail && gaf2paf /data/tmp/27bafead6d355b998e86173ec3f6a1a4/fb4e/1495/tmp88321w7q/HG03492.1.gaf.unstable -l /data/tmp/27bafead6d355b998e86173ec3f6a1a4/fb4e/1495/tmp88321w7q/mg.gfa.node_lengths.tsv | awk 'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"
2023-07-05 12:43:53.632056: Successfully ran: "bash -c 'set -eo pipefail && gaf2paf /data/tmp/27bafead6d355b998e86173ec3f6a1a4/fb4e/1495/tmp88321w7q/HG03492.1.gaf.unstable -l /data/tmp/27bafead6d355b998e86173ec3f6a1a4/fb4e/1495/tmp88321w7q/mg.gfa.node_lengths.tsv | awk '"'"'BEGIN{OFS="	"} {$6="id=_MINIGRAPH_|"$6; print}'"'"''" in 2.8303 seconds and 37.1 Mi memory with job-memory 179.0 Gi. Percent utilization: 0.02022
Issued job 'merge_pafs' kind-merge_pafs/instance-y1bxhz2a v1 with job batch system ID: 236 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'merge_pafs' kind-merge_pafs/instance-i77l0c0h v1 with job batch system ID: 237 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 12:44:48.842535: Running the command: "bgzip /data/tmp/9eeeec3d467250f1999ba98b3759d207/a0f7/8247/tmpktc45q_z.tmp --threads 1"
Got message from job at time 07-05-2023 12:45:19: Job used more disk than requested. For CWL, consider increasing the outdirMin requirement, otherwise, consider increasing the disk requirement. Job files/for-job/kind-merge_pafs/instance-i77l0c0h/cleanup/file-a1c915cd9d654f599b2ac9799e71c080/stream used 637.73% disk (12.8 GiB [13695127552B] used, 2.0 GiB [2147483648B] requested).
2023-07-05 12:46:15.880272: Successfully ran: "bgzip /data/tmp/9eeeec3d467250f1999ba98b3759d207/a0f7/8247/tmpktc45q_z.tmp --threads 1" in 87.0366 seconds and 1.7 Mi memory
Got message from job at time 07-05-2023 12:46:19: Job used more disk than requested. For CWL, consider increasing the outdirMin requirement, otherwise, consider increasing the disk requirement. Job files/for-job/kind-merge_pafs/instance-y1bxhz2a/cleanup/file-78443fbeaf024df1b24f3703c55eff63/stream used 231.16% disk (4.6 GiB [4964196352B] used, 2.0 GiB [2147483648B] requested).
Issued job 'extract_paf_from_gfa' kind-extract_paf_from_gfa/instance-pfpcishq v1 with job batch system ID: 238 and disk: 7.3 Gi, memory: 7.3 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 12:46:50.278188: Running the command: "rgfa2paf /data/tmp/9eeeec3d467250f1999ba98b3759d207/edb0/f809/tmpbblb_914/hprc-v1.1-mc-grch38.sv.gfa -T id=_MINIGRAPH_| -P id=GRCh38| -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/edb0/f809/tmpbblb_914/hprc-v1.1-mc-grch38.sv.gfa.tofilter.paf"
2023-07-05 12:48:06.276920: Successfully ran: "rgfa2paf /data/tmp/9eeeec3d467250f1999ba98b3759d207/edb0/f809/tmpbblb_914/hprc-v1.1-mc-grch38.sv.gfa -T 'id=_MINIGRAPH_|' -P 'id=GRCh38|' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/edb0/f809/tmpbblb_914/hprc-v1.1-mc-grch38.sv.gfa.tofilter.paf" in 75.9976 seconds and 3.0 Gi memory
Got message from job at time 07-05-2023 12:48:06: Job used more disk than requested. For CWL, consider increasing the outdirMin requirement, otherwise, consider increasing the disk requirement. Job files/for-job/kind-extract_paf_from_gfa/instance-pfpcishq/cleanup/file-c4e90a41c2df4c698703706a9d2a956d/stream used 128.22% disk (9.4 GiB [10105143296B] used, 7.3 GiB [7881000280B] requested).
Issued job 'merge_pafs' kind-merge_pafs/instance-pfedxdtq v1 with job batch system ID: 239 and disk: 7.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 12:49:10: Job used more disk than requested. For CWL, consider increasing the outdirMin requirement, otherwise, consider increasing the disk requirement. Job files/for-job/kind-merge_pafs/instance-pfedxdtq/cleanup/file-556f17d1ede84d83acaacb7ae2d69bf2/stream used 173.77% disk (12.8 GiB [13694971904B] used, 7.3 GiB [7881000280B] requested).
Issued job 'zip_gz' kind-zip_gz/instance-8ykbds91 v1 with job batch system ID: 240 and disk: 7.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf_deletions' kind-filter_paf_deletions/instance-br4znlia v1 with job batch system ID: 241 and disk: 7.3 Gi, memory: 44.0 Gi, cores: 16, accelerators: [], preemptible: False
2023-07-05 12:49:40.439401: Running the command: "gzip -f mg.paf.unfiltered"
2023-07-05 12:49:45.794825: Running the command: "vg convert -r 0 -g /data/tmp/9eeeec3d467250f1999ba98b3759d207/59e0/49f7/tmpbhg3z717/mg.gfa -p -T /data/tmp/9eeeec3d467250f1999ba98b3759d207/59e0/49f7/tmpbhg3z717/mg.gfa.trans"
2023-07-05 12:55:22.488285: Successfully ran: "vg convert -r 0 -g /data/tmp/9eeeec3d467250f1999ba98b3759d207/59e0/49f7/tmpbhg3z717/mg.gfa -p -T /data/tmp/9eeeec3d467250f1999ba98b3759d207/59e0/49f7/tmpbhg3z717/mg.gfa.trans" in 336.692 seconds and 2.0 Gi memory with job-memory 44.0 Gi. Percent utilization: 4.502
2023-07-05 12:55:22.488976: Running the command: "filter-paf-deletions /data/tmp/9eeeec3d467250f1999ba98b3759d207/59e0/49f7/tmpbhg3z717/mg.gfa.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/59e0/49f7/tmpbhg3z717/mg.gfa.trans /data/tmp/9eeeec3d467250f1999ba98b3759d207/59e0/49f7/tmpbhg3z717/mg.paf -d 10000000 -v -p -t 16 -m 0.01 -s 2.0"
2023-07-05 12:56:26.816423: Successfully ran: "gzip -f mg.paf.unfiltered" in 406.3759 seconds and 2.1 Mi memory
2023-07-05 13:00:39.169355: Successfully ran: "filter-paf-deletions /data/tmp/9eeeec3d467250f1999ba98b3759d207/59e0/49f7/tmpbhg3z717/mg.gfa.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/59e0/49f7/tmpbhg3z717/mg.gfa.trans /data/tmp/9eeeec3d467250f1999ba98b3759d207/59e0/49f7/tmpbhg3z717/mg.paf -d 10000000 -v -p -t 16 -m 0.01 -s 2.0" in 316.5908 seconds and 17.8 Gi memory with job-memory 44.0 Gi. Percent utilization: 40.51
1 jobs are running, 0 jobs are issued and waiting to run
2023-07-05 13:07:20.830552: Running the command: "wc -l /data/tmp/9eeeec3d467250f1999ba98b3759d207/59e0/49f7/tmpbhg3z717/mg.paf"
2023-07-05 13:07:21.929511: Successfully ran: "wc -l /data/tmp/9eeeec3d467250f1999ba98b3759d207/59e0/49f7/tmpbhg3z717/mg.paf" in 1.0974 seconds and 1.6 Mi memory
2023-07-05 13:07:21.929773: Running the command: "wc -l /data/tmp/9eeeec3d467250f1999ba98b3759d207/59e0/49f7/tmpbhg3z717/mg.paf.filter"
2023-07-05 13:07:23.044961: Successfully ran: "wc -l /data/tmp/9eeeec3d467250f1999ba98b3759d207/59e0/49f7/tmpbhg3z717/mg.paf.filter" in 1.1141 seconds and 1.7 Mi memory
Got message from job at time 07-05-2023 13:07:33: Job used more disk than requested. For CWL, consider increasing the outdirMin requirement, otherwise, consider increasing the disk requirement. Job files/for-job/kind-filter_paf_deletions/instance-br4znlia/cleanup/file-0457637bb8974530a149d6846ae0cef4/stream used 230.81% disk (16.9 GiB [18189750272B] used, 7.3 GiB [7881000280B] requested).
Issued job 'export_graphmap_wrapper' kind-export_graphmap_wrapper/instance-ylq9n7q_ v1 with job batch system ID: 242 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'update_seqfile' kind-update_seqfile/instance-s5q19bqp v1 with job batch system ID: 243 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'unzip_gz' kind-unzip_gz/instance-4l1yv72j v1 with job batch system ID: 244 and disk: 7.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'Job' kind-Job/instance-vypkpjf6 v1 with job batch system ID: 245 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 13:08:30.216553: Running the command: "gzip -fd hprc-v1.1-mc-grch38.sv.gfa.gz"
2023-07-05 13:08:37.527723: Running the command: "samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5b3b/659b/tmpo7kg_q95/GRCh38.fa"
2023-07-05 13:08:52.926238: Successfully ran: "gzip -fd hprc-v1.1-mc-grch38.sv.gfa.gz" in 22.7086 seconds and 1.7 Mi memory
2023-07-05 13:08:56.237402: Successfully ran: "samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5b3b/659b/tmpo7kg_q95/GRCh38.fa" in 18.7086 seconds and 1.6 Mi memory
auto-detected --refContigs chr1 chr10 chr11 chr12 chr13 chr14 chr15 chr16 chr17 chr18 chr19 chr2 chr20 chr21 chr22 chr3 chr4 chr5 chr6 chr7 chr8 chr9 chrEBV chrM chrX chrY --otherContig chrOther
Got message from job at time 07-05-2023 13:08:56: Job used more disk than requested. For CWL, consider increasing the outdirMin requirement, otherwise, consider increasing the disk requirement. Job files/for-job/kind-detect_ref_contigs/instance-n240f2bv/cleanup/file-db44dd2955134a0f90ea2db31b1521fe/stream used 145.80% disk (2.9 GiB [3130953728B] used, 2.0 GiB [2147483648B] requested).
Issued job 'filter_paf' kind-filter_paf/instance-4f9bidfz v1 with job batch system ID: 246 and disk: 62.6 Gi, memory: 62.6 Gi, cores: 1, accelerators: [], preemptible: False
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
2023-07-05 13:10:42.422093: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/6782/f24a/tmpnyrcx8wo/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
2023-07-05 13:13:38.960651: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/6782/f24a/tmpnyrcx8wo/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 176.5375 seconds and 31.7 Gi memory with job-memory 62.6 Gi. Percent utilization: 50.65
Issued job 'split_gfa' kind-split_gfa/instance-9pvxerc_ v1 with job batch system ID: 247 and disk: 68.0 Gi, memory: 40.8 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 13:14:12.096866: Running the command: "rgfa-split -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/mg.paf -b /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_ -Q 2 -a _AMBIGUOUS_ -L /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split.log -n 0.75 -n 0.5 -n 0.25 -T 100000 -T 1000000 -g /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/mg.gfa -G -r id=GRCh38| -A 5"
2023-07-05 13:17:31.029449: Successfully ran: "rgfa-split -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/mg.paf -b /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_ -Q 2 -a _AMBIGUOUS_ -L /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split.log -n 0.75 -n 0.5 -n 0.25 -T 100000 -T 1000000 -g /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/mg.gfa -G -r 'id=GRCh38|' -A 5" in 198.9315 seconds and 3.1 Gi memory with job-memory 40.8 Gi. Percent utilization: 7.638
2023-07-05 13:17:31.030450: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr1_KI270708v1_random.paf"
2023-07-05 13:17:31.036644: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr1_KI270708v1_random.paf" in 0.0055 seconds and 2.3 Mi memory
2023-07-05 13:17:31.066937: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_GL000224v1.paf"
2023-07-05 13:17:31.069606: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_GL000224v1.paf" in 0.002 seconds and 2.3 Mi memory
2023-07-05 13:17:31.321508: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrY.paf"
2023-07-05 13:17:31.344301: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrY.paf" in 0.022 seconds and 2.3 Mi memory
2023-07-05 13:17:31.429691: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270376v1.paf"
2023-07-05 13:17:31.433236: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270376v1.paf" in 0.0028 seconds and 2.2 Mi memory
2023-07-05 13:17:31.644431: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr22_KI270732v1_random.paf"
2023-07-05 13:17:31.648363: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr22_KI270732v1_random.paf" in 0.0031 seconds and 2.2 Mi memory
2023-07-05 13:17:32.197374: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270395v1.paf"
2023-07-05 13:17:32.202223: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270395v1.paf" in 0.0038 seconds and 2.2 Mi memory
2023-07-05 13:17:32.451795: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_GL000218v1.paf"
2023-07-05 13:17:32.455134: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_GL000218v1.paf" in 0.0028 seconds and 2.1 Mi memory
2023-07-05 13:17:32.636656: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270581v1.paf"
2023-07-05 13:17:32.657509: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270581v1.paf" in 0.02 seconds and 2.1 Mi memory
2023-07-05 13:17:32.803745: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270466v1.paf"
2023-07-05 13:17:32.807647: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270466v1.paf" in 0.0032 seconds and 2.3 Mi memory
2023-07-05 13:17:33.182023: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270414v1.paf"
2023-07-05 13:17:33.185589: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270414v1.paf" in 0.0029 seconds and 2.3 Mi memory
2023-07-05 13:17:33.235730: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270753v1.paf"
2023-07-05 13:17:33.237639: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270753v1.paf" in 0.0015 seconds and 2.3 Mi memory
2023-07-05 13:17:33.509431: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270438v1.paf"
2023-07-05 13:17:33.516081: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270438v1.paf" in 0.0059 seconds and 2.2 Mi memory
2023-07-05 13:17:33.588417: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr21.paf"
2023-07-05 13:17:33.964379: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr21.paf" in 0.3754 seconds and 2.3 Mi memory
2023-07-05 13:17:34.772255: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr5_GL000208v1_random.paf"
2023-07-05 13:17:34.776242: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr5_GL000208v1_random.paf" in 0.0032 seconds and 2.3 Mi memory
2023-07-05 13:17:34.797662: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270322v1.paf"
2023-07-05 13:17:34.799481: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270322v1.paf" in 0.0015 seconds and 2.3 Mi memory
2023-07-05 13:17:34.973276: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr17.paf"
2023-07-05 13:17:35.678953: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr17.paf" in 0.7049 seconds and 2.3 Mi memory
2023-07-05 13:17:35.958565: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270334v1.paf"
2023-07-05 13:17:35.962805: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270334v1.paf" in 0.0033 seconds and 2.3 Mi memory
2023-07-05 13:17:36.049548: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270366v1.paf"
2023-07-05 13:17:36.052862: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270366v1.paf" in 0.0027 seconds and 2.3 Mi memory
2023-07-05 13:17:36.233811: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr22_KI270738v1_random.paf"
2023-07-05 13:17:36.237485: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr22_KI270738v1_random.paf" in 0.0031 seconds and 2.3 Mi memory
2023-07-05 13:17:36.279664: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270396v1.paf"
2023-07-05 13:17:36.281865: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270396v1.paf" in 0.0016 seconds and 2.3 Mi memory
2023-07-05 13:17:36.325111: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr22_KI270734v1_random.paf"
2023-07-05 13:17:36.327803: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr22_KI270734v1_random.paf" in 0.0021 seconds and 2.2 Mi memory
2023-07-05 13:17:36.372512: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270517v1.paf"
2023-07-05 13:17:36.374636: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270517v1.paf" in 0.0018 seconds and 2.2 Mi memory
2023-07-05 13:17:36.555322: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr20.paf"
2023-07-05 13:17:37.119961: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr20.paf" in 0.5639 seconds and 2.3 Mi memory
2023-07-05 13:17:37.555536: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr17_GL000205v2_random.paf"
2023-07-05 13:17:37.559848: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr17_GL000205v2_random.paf" in 0.0035 seconds and 2.3 Mi memory
2023-07-05 13:17:37.788317: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr11_KI270721v1_random.paf"
2023-07-05 13:17:37.792373: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr11_KI270721v1_random.paf" in 0.0033 seconds and 2.0 Mi memory
2023-07-05 13:17:37.844233: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270302v1.paf"
2023-07-05 13:17:37.846886: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270302v1.paf" in 0.002 seconds and 2.0 Mi memory
2023-07-05 13:17:38.413898: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270746v1.paf"
2023-07-05 13:17:38.418180: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270746v1.paf" in 0.0034 seconds and 2.3 Mi memory
2023-07-05 13:17:38.449790: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr16.paf"
2023-07-05 13:17:39.156333: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr16.paf" in 0.7058 seconds and 2.3 Mi memory
2023-07-05 13:17:39.529848: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270423v1.paf"
2023-07-05 13:17:39.534031: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270423v1.paf" in 0.0035 seconds and 2.0 Mi memory
2023-07-05 13:17:39.551235: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270588v1.paf"
2023-07-05 13:17:39.553275: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270588v1.paf" in 0.0016 seconds and 2.1 Mi memory
2023-07-05 13:17:39.565997: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270744v1.paf"
2023-07-05 13:17:39.568560: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270744v1.paf" in 0.002 seconds and 2.2 Mi memory
2023-07-05 13:17:39.587370: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270362v1.paf"
2023-07-05 13:17:39.589370: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270362v1.paf" in 0.0015 seconds and 2.2 Mi memory
2023-07-05 13:17:39.720418: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270386v1.paf"
2023-07-05 13:17:39.723760: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270386v1.paf" in 0.0029 seconds and 2.3 Mi memory
2023-07-05 13:17:39.767100: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr14_KI270723v1_random.paf"
2023-07-05 13:17:39.771748: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr14_KI270723v1_random.paf" in 0.0018 seconds and 2.1 Mi memory
2023-07-05 13:17:39.787811: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr14.paf"
2023-07-05 13:17:40.397609: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr14.paf" in 0.6092 seconds and 2.3 Mi memory
2023-07-05 13:17:40.647094: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270756v1.paf"
2023-07-05 13:17:40.651911: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270756v1.paf" in 0.0037 seconds and 2.3 Mi memory
2023-07-05 13:17:40.718379: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270448v1.paf"
2023-07-05 13:17:40.721405: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270448v1.paf" in 0.0024 seconds and 2.3 Mi memory
2023-07-05 13:17:40.742793: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270422v1.paf"
2023-07-05 13:17:40.745525: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270422v1.paf" in 0.0021 seconds and 2.3 Mi memory
2023-07-05 13:17:40.761052: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270330v1.paf"
2023-07-05 13:17:40.763771: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270330v1.paf" in 0.0021 seconds and 2.3 Mi memory
2023-07-05 13:17:41.062818: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr14_KI270722v1_random.paf"
2023-07-05 13:17:41.067064: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr14_KI270722v1_random.paf" in 0.0034 seconds and 2.3 Mi memory
2023-07-05 13:17:41.383162: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr2_KI270716v1_random.paf"
2023-07-05 13:17:41.386983: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr2_KI270716v1_random.paf" in 0.0031 seconds and 2.3 Mi memory
2023-07-05 13:17:41.621656: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr9_KI270720v1_random.paf"
2023-07-05 13:17:41.625974: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr9_KI270720v1_random.paf" in 0.0035 seconds and 2.2 Mi memory
2023-07-05 13:17:41.641058: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr19.paf"
2023-07-05 13:17:42.267680: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr19.paf" in 0.626 seconds and 2.2 Mi memory
2023-07-05 13:17:42.616848: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrM.paf"
2023-07-05 13:17:42.621881: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrM.paf" in 0.004 seconds and 2.0 Mi memory
2023-07-05 13:17:42.657403: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270584v1.paf"
2023-07-05 13:17:42.660423: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270584v1.paf" in 0.0024 seconds and 2.1 Mi memory
2023-07-05 13:17:42.702153: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270751v1.paf"
2023-07-05 13:17:42.705479: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270751v1.paf" in 0.0027 seconds and 2.3 Mi memory
2023-07-05 13:17:42.720829: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270382v1.paf"
2023-07-05 13:17:42.723747: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270382v1.paf" in 0.0022 seconds and 2.2 Mi memory
2023-07-05 13:17:43.223110: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr17_KI270729v1_random.paf"
2023-07-05 13:17:43.227810: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr17_KI270729v1_random.paf" in 0.0039 seconds and 2.3 Mi memory
2023-07-05 13:17:43.577605: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270593v1.paf"
2023-07-05 13:17:43.581430: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270593v1.paf" in 0.0031 seconds and 2.1 Mi memory
2023-07-05 13:17:43.788606: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270467v1.paf"
2023-07-05 13:17:43.794900: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270467v1.paf" in 0.0058 seconds and 2.3 Mi memory
2023-07-05 13:17:44.331786: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr14_GL000225v1_random.paf"
2023-07-05 13:17:44.336190: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr14_GL000225v1_random.paf" in 0.0035 seconds and 2.3 Mi memory
2023-07-05 13:17:44.724187: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr14_GL000194v1_random.paf"
2023-07-05 13:17:44.728650: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr14_GL000194v1_random.paf" in 0.0037 seconds and 2.3 Mi memory
2023-07-05 13:17:44.775271: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270394v1.paf"
2023-07-05 13:17:44.778235: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270394v1.paf" in 0.0022 seconds and 2.3 Mi memory
2023-07-05 13:17:44.820288: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270379v1.paf"
2023-07-05 13:17:44.823306: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270379v1.paf" in 0.0023 seconds and 2.3 Mi memory
2023-07-05 13:17:44.867691: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270304v1.paf"
2023-07-05 13:17:44.870439: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270304v1.paf" in 0.002 seconds and 2.3 Mi memory
2023-07-05 13:17:44.914228: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270591v1.paf"
2023-07-05 13:17:44.916878: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270591v1.paf" in 0.002 seconds and 2.3 Mi memory
2023-07-05 13:17:45.587626: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270530v1.paf"
2023-07-05 13:17:45.591809: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270530v1.paf" in 0.0034 seconds and 2.1 Mi memory
2023-07-05 13:17:45.658894: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270378v1.paf"
2023-07-05 13:17:45.661057: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270378v1.paf" in 0.0017 seconds and 2.2 Mi memory
2023-07-05 13:17:45.698982: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270507v1.paf"
2023-07-05 13:17:45.700782: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270507v1.paf" in 0.0015 seconds and 2.3 Mi memory
2023-07-05 13:17:45.793072: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270468v1.paf"
2023-07-05 13:17:45.795772: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270468v1.paf" in 0.0021 seconds and 2.3 Mi memory
2023-07-05 13:17:45.917044: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270303v1.paf"
2023-07-05 13:17:45.920922: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270303v1.paf" in 0.0031 seconds and 2.2 Mi memory
2023-07-05 13:17:45.975137: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr1_KI270710v1_random.paf"
2023-07-05 13:17:45.978121: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr1_KI270710v1_random.paf" in 0.0023 seconds and 2.3 Mi memory
2023-07-05 13:17:46.065074: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270752v1.paf"
2023-07-05 13:17:46.069006: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270752v1.paf" in 0.0032 seconds and 2.1 Mi memory
2023-07-05 13:17:46.454060: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270417v1.paf"
2023-07-05 13:17:46.457627: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270417v1.paf" in 0.003 seconds and 2.3 Mi memory
2023-07-05 13:17:46.699905: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr1_KI270712v1_random.paf"
2023-07-05 13:17:46.703639: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr1_KI270712v1_random.paf" in 0.0031 seconds and 2.3 Mi memory
2023-07-05 13:17:46.846822: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr5.paf"
2023-07-05 13:17:48.036026: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr5.paf" in 1.1883 seconds and 2.1 Mi memory
2023-07-05 13:17:48.483935: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270509v1.paf"
2023-07-05 13:17:48.487283: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270509v1.paf" in 0.0025 seconds and 2.3 Mi memory
2023-07-05 13:17:48.941965: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr16_KI270728v1_random.paf"
2023-07-05 13:17:48.947004: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr16_KI270728v1_random.paf" in 0.004 seconds and 2.3 Mi memory
2023-07-05 13:17:48.960795: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_GL000219v1.paf"
2023-07-05 13:17:48.963767: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_GL000219v1.paf" in 0.0023 seconds and 2.3 Mi memory
2023-07-05 13:17:48.995759: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270743v1.paf"
2023-07-05 13:17:48.998426: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270743v1.paf" in 0.002 seconds and 2.2 Mi memory
2023-07-05 13:17:49.074356: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270337v1.paf"
2023-07-05 13:17:49.077496: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270337v1.paf" in 0.0025 seconds and 2.3 Mi memory
2023-07-05 13:17:49.195342: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr3_GL000221v1_random.paf"
2023-07-05 13:17:49.198684: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr3_GL000221v1_random.paf" in 0.0027 seconds and 2.1 Mi memory
2023-07-05 13:17:49.334442: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270333v1.paf"
2023-07-05 13:17:49.338509: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270333v1.paf" in 0.0033 seconds and 2.3 Mi memory
2023-07-05 13:17:49.520046: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr1_KI270713v1_random.paf"
2023-07-05 13:17:49.524236: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr1_KI270713v1_random.paf" in 0.0032 seconds and 2.1 Mi memory
2023-07-05 13:17:49.548602: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270522v1.paf"
2023-07-05 13:17:49.551180: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270522v1.paf" in 0.0022 seconds and 2.3 Mi memory
2023-07-05 13:17:49.586056: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr14_KI270725v1_random.paf"
2023-07-05 13:17:49.588412: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr14_KI270725v1_random.paf" in 0.0018 seconds and 2.0 Mi memory
2023-07-05 13:17:50.080499: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270435v1.paf"
2023-07-05 13:17:50.084441: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270435v1.paf" in 0.0032 seconds and 2.2 Mi memory
2023-07-05 13:17:50.094409: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrX.paf"
2023-07-05 13:17:50.850106: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrX.paf" in 0.7552 seconds and 2.3 Mi memory
2023-07-05 13:17:51.230132: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr15.paf"
2023-07-05 13:17:51.817669: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr15.paf" in 0.5866 seconds and 2.3 Mi memory
2023-07-05 13:17:52.345176: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr14_GL000009v2_random.paf"
2023-07-05 13:17:52.349814: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr14_GL000009v2_random.paf" in 0.0037 seconds and 2.2 Mi memory
2023-07-05 13:17:52.419319: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr1_KI270706v1_random.paf"
2023-07-05 13:17:52.422657: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr1_KI270706v1_random.paf" in 0.0027 seconds and 2.3 Mi memory
2023-07-05 13:17:52.491839: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr9_KI270718v1_random.paf"
2023-07-05 13:17:52.494011: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr9_KI270718v1_random.paf" in 0.0015 seconds and 2.3 Mi memory
2023-07-05 13:17:52.616916: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr13.paf"
2023-07-05 13:17:53.379990: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr13.paf" in 0.7624 seconds and 2.3 Mi memory
2023-07-05 13:17:53.678730: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270510v1.paf"
2023-07-05 13:17:53.685779: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270510v1.paf" in 0.0062 seconds and 2.3 Mi memory
2023-07-05 13:17:53.756317: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270316v1.paf"
2023-07-05 13:17:53.767098: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270316v1.paf" in 0.01 seconds and 2.2 Mi memory
2023-07-05 13:17:53.927306: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270340v1.paf"
2023-07-05 13:17:53.930223: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270340v1.paf" in 0.0021 seconds and 2.1 Mi memory
2023-07-05 13:17:54.459058: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr22.paf"
2023-07-05 13:17:54.877657: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr22.paf" in 0.4178 seconds and 2.2 Mi memory
2023-07-05 13:17:55.180885: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr1_KI270707v1_random.paf"
2023-07-05 13:17:55.183918: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr1_KI270707v1_random.paf" in 0.0024 seconds and 2.3 Mi memory
2023-07-05 13:17:55.194231: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270519v1.paf"
2023-07-05 13:17:55.196370: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270519v1.paf" in 0.0016 seconds and 2.3 Mi memory
2023-07-05 13:17:55.375756: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270508v1.paf"
2023-07-05 13:17:55.379672: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270508v1.paf" in 0.0031 seconds and 2.3 Mi memory
2023-07-05 13:17:55.447885: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270412v1.paf"
2023-07-05 13:17:55.449976: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270412v1.paf" in 0.0017 seconds and 2.3 Mi memory
2023-07-05 13:17:55.519794: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270320v1.paf"
2023-07-05 13:17:55.523535: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270320v1.paf" in 0.003 seconds and 2.1 Mi memory
2023-07-05 13:17:55.637058: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270420v1.paf"
2023-07-05 13:17:55.640734: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270420v1.paf" in 0.003 seconds and 2.3 Mi memory
2023-07-05 13:17:55.772191: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270317v1.paf"
2023-07-05 13:17:55.776231: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270317v1.paf" in 0.0033 seconds and 2.1 Mi memory
2023-07-05 13:17:56.124091: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270589v1.paf"
2023-07-05 13:17:56.128289: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270589v1.paf" in 0.0034 seconds and 2.1 Mi memory
2023-07-05 13:17:56.242863: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrEBV.paf"
2023-07-05 13:17:56.246939: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrEBV.paf" in 0.0033 seconds and 2.3 Mi memory
2023-07-05 13:17:56.306633: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270754v1.paf"
2023-07-05 13:17:56.309981: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270754v1.paf" in 0.0026 seconds and 2.0 Mi memory
2023-07-05 13:17:56.316334: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270521v1.paf"
2023-07-05 13:17:56.319348: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270521v1.paf" in 0.0024 seconds and 2.1 Mi memory
2023-07-05 13:17:56.326177: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270582v1.paf"
2023-07-05 13:17:56.329082: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270582v1.paf" in 0.0023 seconds and 2.2 Mi memory
2023-07-05 13:17:56.348791: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr2.paf"
2023-07-05 13:17:57.970172: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr2.paf" in 1.6208 seconds and 2.2 Mi memory
2023-07-05 13:17:58.562514: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270419v1.paf"
2023-07-05 13:17:58.567436: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270419v1.paf" in 0.0039 seconds and 2.3 Mi memory
2023-07-05 13:17:58.688574: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270315v1.paf"
2023-07-05 13:17:58.691895: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270315v1.paf" in 0.0029 seconds and 2.2 Mi memory
2023-07-05 13:17:58.807389: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270384v1.paf"
2023-07-05 13:17:58.810748: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270384v1.paf" in 0.0028 seconds and 2.1 Mi memory
2023-07-05 13:17:59.321898: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270583v1.paf"
2023-07-05 13:17:59.326724: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270583v1.paf" in 0.0038 seconds and 2.3 Mi memory
2023-07-05 13:17:59.401413: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr2_KI270715v1_random.paf"
2023-07-05 13:17:59.403945: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr2_KI270715v1_random.paf" in 0.002 seconds and 2.3 Mi memory
2023-07-05 13:17:59.445209: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270329v1.paf"
2023-07-05 13:17:59.447598: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270329v1.paf" in 0.0019 seconds and 2.3 Mi memory
2023-07-05 13:17:59.528668: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270393v1.paf"
2023-07-05 13:17:59.531780: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270393v1.paf" in 0.0026 seconds and 2.1 Mi memory
2023-07-05 13:17:59.679128: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270383v1.paf"
2023-07-05 13:17:59.682081: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270383v1.paf" in 0.0024 seconds and 2.2 Mi memory
2023-07-05 13:17:59.714621: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270442v1.paf"
2023-07-05 13:17:59.718660: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270442v1.paf" in 0.0034 seconds and 2.1 Mi memory
2023-07-05 13:17:59.859225: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270391v1.paf"
2023-07-05 13:17:59.863184: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270391v1.paf" in 0.0032 seconds and 2.3 Mi memory
2023-07-05 13:17:59.932406: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr4.paf"
2023-07-05 13:18:01.304911: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr4.paf" in 1.3718 seconds and 2.3 Mi memory
2023-07-05 13:18:02.026419: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr7.paf"
2023-07-05 13:18:03.303714: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr7.paf" in 1.2763 seconds and 2.2 Mi memory
2023-07-05 13:18:03.802363: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr6.paf"
2023-07-05 13:18:05.059651: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr6.paf" in 1.2561 seconds and 2.2 Mi memory
2023-07-05 13:18:05.545926: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr22_KI270736v1_random.paf"
2023-07-05 13:18:05.550880: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr22_KI270736v1_random.paf" in 0.0039 seconds and 2.0 Mi memory
2023-07-05 13:18:05.587886: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270515v1.paf"
2023-07-05 13:18:05.590583: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270515v1.paf" in 0.002 seconds and 2.3 Mi memory
2023-07-05 13:18:06.038246: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270548v1.paf"
2023-07-05 13:18:06.043141: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270548v1.paf" in 0.0039 seconds and 2.3 Mi memory
2023-07-05 13:18:06.078529: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270755v1.paf"
2023-07-05 13:18:06.081540: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270755v1.paf" in 0.0024 seconds and 2.2 Mi memory
2023-07-05 13:18:06.251675: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270363v1.paf"
2023-07-05 13:18:06.254666: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270363v1.paf" in 0.0022 seconds and 2.1 Mi memory
2023-07-05 13:18:06.274229: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr22_KI270731v1_random.paf"
2023-07-05 13:18:06.277347: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr22_KI270731v1_random.paf" in 0.0024 seconds and 2.3 Mi memory
2023-07-05 13:18:06.315218: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270748v1.paf"
2023-07-05 13:18:06.318210: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270748v1.paf" in 0.0023 seconds and 2.3 Mi memory
2023-07-05 13:18:06.357251: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrY_KI270740v1_random.paf"
2023-07-05 13:18:06.360444: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrY_KI270740v1_random.paf" in 0.0025 seconds and 2.1 Mi memory
2023-07-05 13:18:06.403469: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr8.paf"
2023-07-05 13:18:07.464439: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr8.paf" in 1.0602 seconds and 2.3 Mi memory
2023-07-05 13:18:07.926652: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_GL000226v1.paf"
2023-07-05 13:18:07.931444: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_GL000226v1.paf" in 0.0038 seconds and 2.3 Mi memory
2023-07-05 13:18:07.993357: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270305v1.paf"
2023-07-05 13:18:07.996375: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270305v1.paf" in 0.0023 seconds and 2.3 Mi memory
2023-07-05 13:18:08.040506: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270544v1.paf"
2023-07-05 13:18:08.043477: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270544v1.paf" in 0.0024 seconds and 2.3 Mi memory
2023-07-05 13:18:08.098826: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr1_KI270709v1_random.paf"
2023-07-05 13:18:08.101741: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr1_KI270709v1_random.paf" in 0.0022 seconds and 2.1 Mi memory
2023-07-05 13:18:08.157344: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270747v1.paf"
2023-07-05 13:18:08.159408: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270747v1.paf" in 0.0015 seconds and 2.0 Mi memory
2023-07-05 13:18:08.290139: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270425v1.paf"
2023-07-05 13:18:08.293863: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270425v1.paf" in 0.0029 seconds and 2.3 Mi memory
2023-07-05 13:18:08.311965: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr9_KI270719v1_random.paf"
2023-07-05 13:18:08.314116: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr9_KI270719v1_random.paf" in 0.0016 seconds and 2.0 Mi memory
2023-07-05 13:18:08.353083: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270757v1.paf"
2023-07-05 13:18:08.355588: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270757v1.paf" in 0.0019 seconds and 2.2 Mi memory
2023-07-05 13:18:08.376121: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr4_GL000008v2_random.paf"
2023-07-05 13:18:08.377964: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr4_GL000008v2_random.paf" in 0.0015 seconds and 2.3 Mi memory
2023-07-05 13:18:08.396441: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_GL000195v1.paf"
2023-07-05 13:18:08.398683: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_GL000195v1.paf" in 0.0019 seconds and 2.2 Mi memory
2023-07-05 13:18:08.422651: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr10.paf"
2023-07-05 13:18:09.467535: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr10.paf" in 1.0444 seconds and 2.1 Mi memory
2023-07-05 13:18:10.074971: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr22_KI270735v1_random.paf"
2023-07-05 13:18:10.079163: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr22_KI270735v1_random.paf" in 0.0034 seconds and 2.3 Mi memory
2023-07-05 13:18:10.132035: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270742v1.paf"
2023-07-05 13:18:10.134473: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270742v1.paf" in 0.0021 seconds and 2.3 Mi memory
2023-07-05 13:18:10.199751: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr14_KI270724v1_random.paf"
2023-07-05 13:18:10.201717: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr14_KI270724v1_random.paf" in 0.0016 seconds and 2.3 Mi memory
2023-07-05 13:18:10.262076: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_GL000220v1.paf"
2023-07-05 13:18:10.264322: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_GL000220v1.paf" in 0.0018 seconds and 2.3 Mi memory
2023-07-05 13:18:10.285423: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr3.paf"
2023-07-05 13:18:11.532847: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr3.paf" in 1.2468 seconds and 2.1 Mi memory
2023-07-05 13:18:12.021814: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270580v1.paf"
2023-07-05 13:18:12.026104: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270580v1.paf" in 0.0035 seconds and 2.1 Mi memory
2023-07-05 13:18:12.599645: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270311v1.paf"
2023-07-05 13:18:12.603654: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270311v1.paf" in 0.0033 seconds and 2.3 Mi memory
2023-07-05 13:18:12.989950: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270750v1.paf"
2023-07-05 13:18:12.994734: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270750v1.paf" in 0.0038 seconds and 2.3 Mi memory
2023-07-05 13:18:13.073141: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270411v1.paf"
2023-07-05 13:18:13.077035: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270411v1.paf" in 0.0032 seconds and 2.3 Mi memory
2023-07-05 13:18:13.095408: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270741v1.paf"
2023-07-05 13:18:13.098310: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270741v1.paf" in 0.0023 seconds and 2.0 Mi memory
2023-07-05 13:18:13.117462: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270516v1.paf"
2023-07-05 13:18:13.120573: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270516v1.paf" in 0.0025 seconds and 2.3 Mi memory
2023-07-05 13:18:13.167892: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr11.paf"
2023-07-05 13:18:14.112264: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr11.paf" in 0.9436 seconds and 2.3 Mi memory
2023-07-05 13:18:14.489106: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270387v1.paf"
2023-07-05 13:18:14.493871: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270387v1.paf" in 0.0038 seconds and 2.2 Mi memory
2023-07-05 13:18:15.040961: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270745v1.paf"
2023-07-05 13:18:15.045859: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270745v1.paf" in 0.0039 seconds and 2.2 Mi memory
2023-07-05 13:18:15.065769: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270385v1.paf"
2023-07-05 13:18:15.068739: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270385v1.paf" in 0.0023 seconds and 2.3 Mi memory
2023-07-05 13:18:15.394336: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270392v1.paf"
2023-07-05 13:18:15.398549: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270392v1.paf" in 0.0034 seconds and 2.3 Mi memory
2023-07-05 13:18:15.427899: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270590v1.paf"
2023-07-05 13:18:15.429817: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270590v1.paf" in 0.0015 seconds and 2.1 Mi memory
2023-07-05 13:18:15.454944: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270390v1.paf"
2023-07-05 13:18:15.457315: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270390v1.paf" in 0.0018 seconds and 2.1 Mi memory
2023-07-05 13:18:15.524543: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr17_KI270730v1_random.paf"
2023-07-05 13:18:15.526794: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr17_KI270730v1_random.paf" in 0.0019 seconds and 2.3 Mi memory
2023-07-05 13:18:15.547411: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270465v1.paf"
2023-07-05 13:18:15.549590: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270465v1.paf" in 0.0017 seconds and 2.3 Mi memory
2023-07-05 13:18:15.692808: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270529v1.paf"
2023-07-05 13:18:15.696123: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270529v1.paf" in 0.0028 seconds and 2.3 Mi memory
2023-07-05 13:18:15.733691: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr1.paf"
2023-07-05 13:18:17.347659: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr1.paf" in 1.6133 seconds and 2.3 Mi memory
2023-07-05 13:18:17.918559: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270429v1.paf"
2023-07-05 13:18:17.925858: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270429v1.paf" in 0.0038 seconds and 2.0 Mi memory
2023-07-05 13:18:17.944842: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270579v1.paf"
2023-07-05 13:18:17.947211: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270579v1.paf" in 0.0018 seconds and 2.3 Mi memory
2023-07-05 13:18:18.289499: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270538v1.paf"
2023-07-05 13:18:18.294327: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270538v1.paf" in 0.0038 seconds and 2.1 Mi memory
2023-07-05 13:18:18.315468: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270518v1.paf"
2023-07-05 13:18:18.318204: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270518v1.paf" in 0.0022 seconds and 2.3 Mi memory
2023-07-05 13:18:18.335414: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270381v1.paf"
2023-07-05 13:18:18.338142: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270381v1.paf" in 0.0021 seconds and 2.3 Mi memory
2023-07-05 13:18:18.343813: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270336v1.paf"
2023-07-05 13:18:18.346362: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270336v1.paf" in 0.002 seconds and 2.3 Mi memory
2023-07-05 13:18:18.359091: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr9_KI270717v1_random.paf"
2023-07-05 13:18:18.361792: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr9_KI270717v1_random.paf" in 0.0021 seconds and 2.3 Mi memory
2023-07-05 13:18:18.457826: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270511v1.paf"
2023-07-05 13:18:18.461264: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270511v1.paf" in 0.003 seconds and 2.3 Mi memory
2023-07-05 13:18:18.482627: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270388v1.paf"
2023-07-05 13:18:18.485141: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270388v1.paf" in 0.0019 seconds and 2.3 Mi memory
2023-07-05 13:18:18.518447: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270373v1.paf"
2023-07-05 13:18:18.520630: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270373v1.paf" in 0.0017 seconds and 2.1 Mi memory
2023-07-05 13:18:18.589782: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_GL000216v2.paf"
2023-07-05 13:18:18.592179: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_GL000216v2.paf" in 0.002 seconds and 2.2 Mi memory
2023-07-05 13:18:18.626956: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_GL000214v1.paf"
2023-07-05 13:18:18.630313: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_GL000214v1.paf" in 0.0027 seconds and 2.2 Mi memory
2023-07-05 13:18:19.105979: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270389v1.paf"
2023-07-05 13:18:19.110781: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270389v1.paf" in 0.0038 seconds and 2.1 Mi memory
2023-07-05 13:18:19.133549: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270418v1.paf"
2023-07-05 13:18:19.136664: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270418v1.paf" in 0.0025 seconds and 2.1 Mi memory
2023-07-05 13:18:19.157170: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr9.paf"
2023-07-05 13:18:20.049971: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr9.paf" in 0.8921 seconds and 2.1 Mi memory
2023-07-05 13:18:20.387028: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270312v1.paf"
2023-07-05 13:18:20.392708: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270312v1.paf" in 0.0046 seconds and 2.3 Mi memory
2023-07-05 13:18:20.405348: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr1_KI270714v1_random.paf"
2023-07-05 13:18:20.408125: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr1_KI270714v1_random.paf" in 0.0022 seconds and 2.0 Mi memory
2023-07-05 13:18:20.419918: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270310v1.paf"
2023-07-05 13:18:20.422497: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270310v1.paf" in 0.002 seconds and 2.3 Mi memory
2023-07-05 13:18:20.428118: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr18.paf"
2023-07-05 13:18:21.033815: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr18.paf" in 0.605 seconds and 2.3 Mi memory
2023-07-05 13:18:21.281387: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr22_KI270733v1_random.paf"
2023-07-05 13:18:21.286417: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr22_KI270733v1_random.paf" in 0.0043 seconds and 2.3 Mi memory
2023-07-05 13:18:21.304537: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr12.paf"
2023-07-05 13:18:22.263421: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chr12.paf" in 0.9582 seconds and 2.3 Mi memory
2023-07-05 13:18:22.750946: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270335v1.paf"
2023-07-05 13:18:22.755221: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270335v1.paf" in 0.0035 seconds and 2.3 Mi memory
2023-07-05 13:18:22.795893: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270539v1.paf"
2023-07-05 13:18:22.798127: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270539v1.paf" in 0.0017 seconds and 2.3 Mi memory
2023-07-05 13:18:22.818165: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270512v1.paf"
2023-07-05 13:18:22.820758: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270512v1.paf" in 0.002 seconds and 2.3 Mi memory
2023-07-05 13:18:22.841197: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270749v1.paf"
2023-07-05 13:18:22.843366: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split_chrUn_KI270749v1.paf" in 0.0018 seconds and 2.3 Mi memory
2023-07-05 13:18:23.136776: Running the command: "sed -e s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e -e s/ /	/g -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split__AMBIGUOUS_.paf"
2023-07-05 13:18:23.297217: Successfully ran: "sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' -e 's/ /	/g' -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/d58c/2c24/tmpvbrkoonj/split__AMBIGUOUS_.paf" in 0.1593 seconds and 2.2 Mi memory
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-9ktejdm1 v1 with job batch system ID: 248 and disk: 8.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-yc2e7z8w v1 with job batch system ID: 249 and disk: 8.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-w391bhov v1 with job batch system ID: 250 and disk: 8.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-oyqa89c0 v1 with job batch system ID: 251 and disk: 8.2 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-nsuqihwp v1 with job batch system ID: 252 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-q83yf_x_ v1 with job batch system ID: 253 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-zh2s5n1m v1 with job batch system ID: 254 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-kjymss7v v1 with job batch system ID: 255 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-nt5xmvo2 v1 with job batch system ID: 256 and disk: 8.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-seuk08jp v1 with job batch system ID: 257 and disk: 8.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-7_5e8smj v1 with job batch system ID: 258 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-c2qs723_ v1 with job batch system ID: 259 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-j00zc5wr v1 with job batch system ID: 260 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-fdhe91i7 v1 with job batch system ID: 261 and disk: 8.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-fo7g7mp1 v1 with job batch system ID: 262 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-bn_g6op7 v1 with job batch system ID: 263 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-rdgspr6n v1 with job batch system ID: 264 and disk: 8.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-y_hmsqq6 v1 with job batch system ID: 265 and disk: 8.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-8ovt1np1 v1 with job batch system ID: 266 and disk: 8.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-sr2dfwpo v1 with job batch system ID: 267 and disk: 8.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-f_ypsb4_ v1 with job batch system ID: 268 and disk: 8.2 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-4opuzucv v1 with job batch system ID: 269 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-nez8myqa v1 with job batch system ID: 270 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-72as8_vh v1 with job batch system ID: 271 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-fyr8cndy v1 with job batch system ID: 272 and disk: 8.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-1_jb5x6o v1 with job batch system ID: 273 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-nz0f0rur v1 with job batch system ID: 274 and disk: 8.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-ho1b_qtx v1 with job batch system ID: 275 and disk: 8.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-a86w5hbl v1 with job batch system ID: 276 and disk: 8.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-3aetrbjf v1 with job batch system ID: 277 and disk: 8.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-jy7szzx7 v1 with job batch system ID: 278 and disk: 8.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-3c_sg1xa v1 with job batch system ID: 279 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-_s4f17xq v1 with job batch system ID: 280 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-8gwpzly6 v1 with job batch system ID: 281 and disk: 8.2 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-7f_s3n2b v1 with job batch system ID: 282 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-g713wc3r v1 with job batch system ID: 283 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-gk5t29co v1 with job batch system ID: 284 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-jopwgipp v1 with job batch system ID: 285 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-4xl5njra v1 with job batch system ID: 286 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-7sy5855_ v1 with job batch system ID: 287 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-4x6tjdu4 v1 with job batch system ID: 288 and disk: 8.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-idnbmfgt v1 with job batch system ID: 289 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-0rqe1dpf v1 with job batch system ID: 290 and disk: 8.2 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-4t5fgujh v1 with job batch system ID: 291 and disk: 8.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-tz7rvbdk v1 with job batch system ID: 292 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-hwb1c1x7 v1 with job batch system ID: 293 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-isa_rte3 v1 with job batch system ID: 294 and disk: 8.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-5kppd4m8 v1 with job batch system ID: 295 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-jr5t2xh8 v1 with job batch system ID: 296 and disk: 8.7 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-nba895va v1 with job batch system ID: 297 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-3l1q_3n9 v1 with job batch system ID: 298 and disk: 8.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-2kxqejob v1 with job batch system ID: 299 and disk: 8.2 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-tw96tj09 v1 with job batch system ID: 300 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-g40y4s21 v1 with job batch system ID: 301 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-wiy91pga v1 with job batch system ID: 302 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-8gvic320 v1 with job batch system ID: 303 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-9hkr5ni5 v1 with job batch system ID: 304 and disk: 8.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-hxjyymk8 v1 with job batch system ID: 305 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-z57khfb1 v1 with job batch system ID: 306 and disk: 8.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-45fku29j v1 with job batch system ID: 307 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-35inydz1 v1 with job batch system ID: 308 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-v5bm4_nb v1 with job batch system ID: 309 and disk: 8.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-9qw3k5sr v1 with job batch system ID: 310 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-8i_cim5x v1 with job batch system ID: 311 and disk: 8.2 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-htdfcb47 v1 with job batch system ID: 312 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-gw8y0ugc v1 with job batch system ID: 313 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-4h1926_p v1 with job batch system ID: 314 and disk: 2.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-97_n_q42 v1 with job batch system ID: 315 and disk: 8.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-t3at8nx0 v1 with job batch system ID: 316 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-pq0uojht v1 with job batch system ID: 317 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-w2bewlkx v1 with job batch system ID: 318 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-szuz7lqw v1 with job batch system ID: 319 and disk: 8.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-4cal21ij v1 with job batch system ID: 320 and disk: 8.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-uao_f5j6 v1 with job batch system ID: 321 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-fkwqb3zq v1 with job batch system ID: 322 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-3_vsi8ho v1 with job batch system ID: 323 and disk: 8.8 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-rkpv3a7q v1 with job batch system ID: 324 and disk: 8.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-c99zem4f v1 with job batch system ID: 325 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-7jx2e7om v1 with job batch system ID: 326 and disk: 8.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-e12jsq9x v1 with job batch system ID: 327 and disk: 8.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-ag0p022q v1 with job batch system ID: 328 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-0lhyow0_ v1 with job batch system ID: 329 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-22rf1rx9 v1 with job batch system ID: 330 and disk: 8.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-985d_cgw v1 with job batch system ID: 331 and disk: 8.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-nj465zl7 v1 with job batch system ID: 332 and disk: 8.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-2aef9dpp v1 with job batch system ID: 333 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-ln9r0tld v1 with job batch system ID: 334 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-8ckmdg7u v1 with job batch system ID: 335 and disk: 8.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-xv0963ih v1 with job batch system ID: 336 and disk: 8.6 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-uennyg_g v1 with job batch system ID: 337 and disk: 8.3 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'split_fa_into_contigs' kind-split_fa_into_contigs/instance-wk_tbj7a v1 with job batch system ID: 338 and disk: 8.5 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 13:19:36.398842: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr1_KI270708v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:02.793299: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr1_KI270708v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 26.393 seconds and 49.3 Mi memory
2023-07-05 13:20:02.793687: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr1_KI270708v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:02.884573: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr1_KI270708v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0899 seconds and 3.7 Mi memory
2023-07-05 13:20:03.122742: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_GL000224v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:03.456371: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_GL000224v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3327 seconds and 41.1 Mi memory
2023-07-05 13:20:03.456727: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_GL000224v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:03.473027: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_GL000224v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0156 seconds and 3.7 Mi memory
2023-07-05 13:20:03.631776: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270749v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:03.951638: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270749v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3192 seconds and 41.3 Mi memory
2023-07-05 13:20:03.951888: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270749v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:03.967620: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270749v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0151 seconds and 3.7 Mi memory
2023-07-05 13:20:04.128524: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr1_KI270707v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:04.442499: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr1_KI270707v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3133 seconds and 41.1 Mi memory
2023-07-05 13:20:04.442751: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr1_KI270707v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:04.458300: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr1_KI270707v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0148 seconds and 3.7 Mi memory
2023-07-05 13:20:04.615284: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270386v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:04.927168: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270386v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3113 seconds and 41.1 Mi memory
2023-07-05 13:20:04.927430: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270386v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:04.942918: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270386v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0148 seconds and 3.7 Mi memory
2023-07-05 13:20:05.068665: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270317v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:05.382048: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270317v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3127 seconds and 41.1 Mi memory
2023-07-05 13:20:05.382313: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270317v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:05.398124: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270317v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0151 seconds and 3.8 Mi memory
2023-07-05 13:20:05.568007: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr22_KI270735v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:06.068348: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr22_KI270735v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.4996 seconds and 41.1 Mi memory
2023-07-05 13:20:06.068610: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr22_KI270735v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:06.106599: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr22_KI270735v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0371 seconds and 3.7 Mi memory
2023-07-05 13:20:06.191778: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270382v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:07.513833: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270382v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.321 seconds and 41.1 Mi memory
2023-07-05 13:20:07.514198: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270382v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:07.530169: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270382v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0151 seconds and 3.7 Mi memory
2023-07-05 13:20:07.683810: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270305v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:07.998449: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270305v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3138 seconds and 41.1 Mi memory
2023-07-05 13:20:07.998695: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270305v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:08.014362: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270305v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.015 seconds and 3.7 Mi memory
2023-07-05 13:20:08.178644: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrY.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:10.541968: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrY.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.3627 seconds and 70.5 Mi memory
2023-07-05 13:20:10.542215: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrY.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:10.966189: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrY.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4232 seconds and 3.8 Mi memory
2023-07-05 13:20:11.179346: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270376v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:11.494111: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270376v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3139 seconds and 41.1 Mi memory
2023-07-05 13:20:11.494365: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270376v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:11.510023: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270376v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.015 seconds and 3.7 Mi memory
2023-07-05 13:20:11.671120: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_GL000218v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:11.987975: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_GL000218v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3161 seconds and 41.3 Mi memory
2023-07-05 13:20:11.988238: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_GL000218v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:12.002050: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_GL000218v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0132 seconds and 3.8 Mi memory
2023-07-05 13:20:12.168113: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:14.902652: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.7338 seconds and 46.5 Mi memory
2023-07-05 13:20:14.902911: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:15.321218: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4175 seconds and 3.7 Mi memory
2023-07-05 13:20:15.517749: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr22_KI270732v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:15.836790: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr22_KI270732v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3177 seconds and 41.1 Mi memory
2023-07-05 13:20:15.837160: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr22_KI270732v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:15.853841: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr22_KI270732v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0159 seconds and 3.7 Mi memory
2023-07-05 13:20:16.012115: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270511v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:16.326429: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270511v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3136 seconds and 41.1 Mi memory
2023-07-05 13:20:16.326794: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270511v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:16.340774: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270511v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0133 seconds and 3.8 Mi memory
2023-07-05 13:20:16.544711: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:36.732890: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 20.1872 seconds and 43.6 Mi memory
2023-07-05 13:20:36.733129: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:38.038065: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3042 seconds and 3.7 Mi memory
2023-07-05 13:20:38.344372: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr3_GL000221v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:38.683789: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr3_GL000221v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3382 seconds and 41.3 Mi memory
2023-07-05 13:20:38.684158: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr3_GL000221v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:38.699539: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr3_GL000221v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0146 seconds and 3.8 Mi memory
2023-07-05 13:20:38.844333: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270388v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:40.493414: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270388v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.6483 seconds and 41.1 Mi memory
2023-07-05 13:20:40.493808: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270388v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:40.510592: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270388v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0158 seconds and 3.8 Mi memory
2023-07-05 13:20:40.677496: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270363v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:40.990967: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270363v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3127 seconds and 41.1 Mi memory
2023-07-05 13:20:40.991340: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270363v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:41.007706: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270363v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0156 seconds and 3.7 Mi memory
2023-07-05 13:20:41.174729: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270395v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:41.487082: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270395v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3117 seconds and 41.1 Mi memory
2023-07-05 13:20:41.487457: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270395v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:41.499838: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270395v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0117 seconds and 3.7 Mi memory
2023-07-05 13:20:41.665672: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr1_KI270706v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:41.984006: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr1_KI270706v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3176 seconds and 41.4 Mi memory
2023-07-05 13:20:41.984274: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr1_KI270706v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:41.999962: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr1_KI270706v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0149 seconds and 3.7 Mi memory
2023-07-05 13:20:42.157596: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr22_KI270736v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:42.475806: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr22_KI270736v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3176 seconds and 41.1 Mi memory
2023-07-05 13:20:42.476054: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr22_KI270736v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:42.491887: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr22_KI270736v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0152 seconds and 3.7 Mi memory
2023-07-05 13:20:42.655126: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr14_GL000194v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:42.984298: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr14_GL000194v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3285 seconds and 41.1 Mi memory
2023-07-05 13:20:42.984668: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr14_GL000194v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:43.001359: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr14_GL000194v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.016 seconds and 3.8 Mi memory
2023-07-05 13:20:43.166321: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr14_KI270724v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:43.480979: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr14_KI270724v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.314 seconds and 41.1 Mi memory
2023-07-05 13:20:43.481225: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr14_KI270724v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:43.497841: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr14_KI270724v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0159 seconds and 3.8 Mi memory
2023-07-05 13:20:43.667506: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270515v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:43.980544: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270515v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3124 seconds and 41.1 Mi memory
2023-07-05 13:20:43.980912: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270515v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:43.995568: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270515v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0139 seconds and 3.8 Mi memory
2023-07-05 13:20:44.155975: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270417v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:44.469031: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270417v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3124 seconds and 41.1 Mi memory
2023-07-05 13:20:44.469287: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270417v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:44.482377: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270417v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0124 seconds and 3.7 Mi memory
2023-07-05 13:20:44.624664: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270580v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:44.933837: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270580v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3084 seconds and 41.1 Mi memory
2023-07-05 13:20:44.934200: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270580v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:44.948821: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270580v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0139 seconds and 3.7 Mi memory
2023-07-05 13:20:45.105382: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270517v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:45.414350: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270517v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3081 seconds and 41.1 Mi memory
2023-07-05 13:20:45.414602: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270517v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:45.430259: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270517v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.015 seconds and 3.8 Mi memory
2023-07-05 13:20:45.583011: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270538v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:45.896713: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270538v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.313 seconds and 41.1 Mi memory
2023-07-05 13:20:45.896971: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270538v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:45.909246: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270538v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0116 seconds and 3.7 Mi memory
2023-07-05 13:20:46.057353: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_GL000214v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:46.403357: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_GL000214v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3453 seconds and 41.1 Mi memory
2023-07-05 13:20:46.403734: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_GL000214v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:46.419387: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_GL000214v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0149 seconds and 3.7 Mi memory
2023-07-05 13:20:46.555043: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270581v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:46.868885: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270581v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3131 seconds and 41.1 Mi memory
2023-07-05 13:20:46.869268: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270581v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:46.883758: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270581v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0137 seconds and 3.8 Mi memory
2023-07-05 13:20:47.050556: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr22_KI270738v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:47.367141: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr22_KI270738v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3159 seconds and 41.1 Mi memory
2023-07-05 13:20:47.367397: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr22_KI270738v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:47.382589: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr22_KI270738v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0146 seconds and 3.8 Mi memory
2023-07-05 13:20:47.545720: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270756v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:47.859665: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270756v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3133 seconds and 41.1 Mi memory
2023-07-05 13:20:47.859916: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270756v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:47.875261: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270756v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0146 seconds and 3.8 Mi memory
2023-07-05 13:20:48.040213: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270466v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:48.352312: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270466v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3114 seconds and 41.1 Mi memory
2023-07-05 13:20:48.352680: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270466v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:48.367465: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270466v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.014 seconds and 3.7 Mi memory
2023-07-05 13:20:48.529805: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270746v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:48.849943: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270746v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3194 seconds and 41.1 Mi memory
2023-07-05 13:20:48.850309: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270746v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:48.865370: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270746v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0143 seconds and 3.7 Mi memory
2023-07-05 13:20:49.022122: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270753v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:49.343272: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270753v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3205 seconds and 41.1 Mi memory
2023-07-05 13:20:49.343642: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270753v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:49.358466: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270753v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0141 seconds and 3.7 Mi memory
2023-07-05 13:20:49.518385: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270530v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:49.829789: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270530v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3107 seconds and 41.1 Mi memory
2023-07-05 13:20:49.830034: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270530v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:49.845248: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270530v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0145 seconds and 3.8 Mi memory
2023-07-05 13:20:50.040637: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr9_KI270718v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:20:58.026214: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr9_KI270718v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.9697 seconds and 41.1 Mi memory
2023-07-05 13:20:58.026622: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr9_KI270718v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:20:58.076986: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr9_KI270718v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0492 seconds and 3.8 Mi memory
2023-07-05 13:20:58.308577: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270414v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:00.051991: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270414v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.7392 seconds and 41.1 Mi memory
2023-07-05 13:21:00.052412: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270414v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:00.069683: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270414v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0163 seconds and 3.8 Mi memory
2023-07-05 13:21:00.229200: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270747v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:00.542938: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270747v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.313 seconds and 41.4 Mi memory
2023-07-05 13:21:00.543192: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270747v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:00.558828: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270747v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.015 seconds and 3.8 Mi memory
2023-07-05 13:21:00.724904: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr14_KI270722v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:01.053409: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr14_KI270722v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3277 seconds and 41.1 Mi memory
2023-07-05 13:21:01.053770: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr14_KI270722v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:01.070189: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr14_KI270722v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0157 seconds and 3.8 Mi memory
2023-07-05 13:21:01.232946: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270529v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:01.544016: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270529v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3104 seconds and 41.1 Mi memory
2023-07-05 13:21:01.544293: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270529v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:01.559890: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270529v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0149 seconds and 3.8 Mi memory
2023-07-05 13:21:01.719555: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr1_KI270712v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:02.044951: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr1_KI270712v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3247 seconds and 41.1 Mi memory
2023-07-05 13:21:02.045194: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr1_KI270712v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:02.061066: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr1_KI270712v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0153 seconds and 3.7 Mi memory
2023-07-05 13:21:02.216150: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270743v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:02.548597: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270743v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3316 seconds and 41.1 Mi memory
2023-07-05 13:21:02.548958: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270743v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:02.563680: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270743v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.014 seconds and 3.7 Mi memory
2023-07-05 13:21:02.718087: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270468v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:03.031479: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270468v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3126 seconds and 41.1 Mi memory
2023-07-05 13:21:03.031847: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270468v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:03.126185: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270468v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0936 seconds and 3.7 Mi memory
2023-07-05 13:21:03.347769: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270589v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:03.663582: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270589v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.315 seconds and 41.1 Mi memory
2023-07-05 13:21:03.663836: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270589v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:03.679748: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270589v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0152 seconds and 3.7 Mi memory
2023-07-05 13:21:03.855002: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270582v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:05.795707: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270582v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.9398 seconds and 41.1 Mi memory
2023-07-05 13:21:05.796076: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270582v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:05.812158: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270582v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0151 seconds and 3.8 Mi memory
2023-07-05 13:21:05.974984: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr16_KI270728v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:06.381793: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr16_KI270728v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.4061 seconds and 41.8 Mi memory
2023-07-05 13:21:06.382036: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr16_KI270728v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:06.410807: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr16_KI270728v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0281 seconds and 3.7 Mi memory
2023-07-05 13:21:06.576733: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270438v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:06.893441: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270438v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3161 seconds and 41.1 Mi memory
2023-07-05 13:21:06.893678: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270438v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:06.909352: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270438v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.015 seconds and 3.7 Mi memory
2023-07-05 13:21:07.069750: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr9_KI270720v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:07.384797: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr9_KI270720v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3144 seconds and 41.1 Mi memory
2023-07-05 13:21:07.385144: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr9_KI270720v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:07.399810: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr9_KI270720v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0139 seconds and 3.7 Mi memory
2023-07-05 13:21:07.546214: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270390v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:07.858004: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270390v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.311 seconds and 41.1 Mi memory
2023-07-05 13:21:07.858373: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270390v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:07.872889: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270390v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0138 seconds and 3.7 Mi memory
2023-07-05 13:21:07.974586: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chrY.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:07.976904: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chrY.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:08.024326: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:11.386860: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chrUn_KI270749v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:11.879053: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:12.127533: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:12.156158: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chrUn_GL000218v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:12.214945: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:12.548192: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:12.790011: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chrUn_GL000218v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:13.020842: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:13.250541: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:13.571399: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5463 seconds and 51.2 Mi memory
2023-07-05 13:21:13.571641: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:13.947558: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:14.257760: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6854 seconds and 3.8 Mi memory
2023-07-05 13:21:14.403211: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270334v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:14.716969: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270334v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3125 seconds and 41.1 Mi memory
2023-07-05 13:21:14.717208: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270334v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:14.728492: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270334v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0106 seconds and 3.8 Mi memory
2023-07-05 13:21:14.816017: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270509v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:14.901360: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chrY.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:15.128411: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270509v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3117 seconds and 41.1 Mi memory
2023-07-05 13:21:15.128650: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270509v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:15.139824: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270509v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0105 seconds and 3.7 Mi memory
2023-07-05 13:21:15.211174: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr22_KI270734v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:15.309031: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:15.531387: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr22_KI270734v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3195 seconds and 41.4 Mi memory
2023-07-05 13:21:15.531750: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr22_KI270734v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:15.542326: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr22_KI270734v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0098 seconds and 3.8 Mi memory
2023-07-05 13:21:15.639356: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:22.564882: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:25.901290: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:25.902899: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:25.906269: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chrY.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:26.004773: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:26.061584: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:26.064501: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:26.067941: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:26.082695: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:26.287281: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chrY.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:26.345077: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:26.355894: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:28.744754: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.1046 seconds and 45.3 Mi memory
2023-07-05 13:21:28.745028: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:30.276504: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5306 seconds and 3.6 Mi memory
2023-07-05 13:21:30.383729: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:40.980430: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chrY.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 33.0019 seconds and 8.6 Mi memory
2023-07-05 13:21:40.980733: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chrY.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:41.182498: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chrY.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2009 seconds and 3.8 Mi memory
2023-07-05 13:21:41.249021: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:41.544328: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chrY.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 33.5681 seconds and 11.2 Mi memory
2023-07-05 13:21:41.544627: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chrY.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:41.826647: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chrY.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2812 seconds and 3.7 Mi memory
2023-07-05 13:21:41.900088: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:43.993463: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.7436 seconds and 29.4 Mi memory
2023-07-05 13:21:43.993736: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:44.258983: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.3581 seconds and 33.6 Mi memory
2023-07-05 13:21:44.259251: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:44.356473: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3618 seconds and 3.8 Mi memory
2023-07-05 13:21:44.411729: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:44.574228: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3141 seconds and 3.7 Mi memory
2023-07-05 13:21:44.642038: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:45.540729: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.1561 seconds and 59.0 Mi memory
2023-07-05 13:21:45.541001: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:47.092055: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chrUn_KI270749v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 35.7036 seconds and 2.9 Mi memory
2023-07-05 13:21:47.092368: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chrUn_KI270749v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:47.099792: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chrUn_KI270749v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0067 seconds and 3.7 Mi memory
2023-07-05 13:21:47.307830: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:47.789218: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2475 seconds and 3.7 Mi memory
2023-07-05 13:21:47.938367: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr2_KI270715v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:48.330549: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr2_KI270715v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3823 seconds and 41.1 Mi memory
2023-07-05 13:21:48.330812: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr2_KI270715v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:48.336792: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr2_KI270715v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0054 seconds and 3.7 Mi memory
2023-07-05 13:21:48.367898: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr5_GL000208v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:48.481143: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chrUn_GL000218v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 36.3234 seconds and 3.1 Mi memory
2023-07-05 13:21:48.481431: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chrUn_GL000218v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:48.490796: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chrUn_GL000218v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0087 seconds and 3.8 Mi memory
2023-07-05 13:21:48.521323: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:48.681752: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr5_GL000208v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3131 seconds and 41.1 Mi memory
2023-07-05 13:21:48.682123: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr5_GL000208v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:48.689158: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr5_GL000208v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0063 seconds and 3.7 Mi memory
2023-07-05 13:21:48.719420: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270392v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:49.403327: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270392v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.6833 seconds and 41.1 Mi memory
2023-07-05 13:21:49.403590: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270392v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:49.410404: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270392v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0061 seconds and 3.7 Mi memory
2023-07-05 13:21:49.441897: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270322v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:49.748771: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270322v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3063 seconds and 41.1 Mi memory
2023-07-05 13:21:49.749029: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270322v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:49.755747: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270322v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0061 seconds and 3.7 Mi memory
2023-07-05 13:21:49.765567: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270508v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:49.896165: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chrUn_GL000218v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 37.1046 seconds and 3.1 Mi memory
2023-07-05 13:21:49.896473: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chrUn_GL000218v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:49.905984: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chrUn_GL000218v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0089 seconds and 3.7 Mi memory
2023-07-05 13:21:49.916004: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:50.028961: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.7201 seconds and 26.9 Mi memory
2023-07-05 13:21:50.029353: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:50.074206: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270508v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.308 seconds and 41.1 Mi memory
2023-07-05 13:21:50.074472: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270508v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:50.087776: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270508v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0126 seconds and 3.8 Mi memory
2023-07-05 13:21:50.097860: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270383v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:50.381691: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3514 seconds and 3.8 Mi memory
2023-07-05 13:21:50.404931: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270383v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3064 seconds and 41.1 Mi memory
2023-07-05 13:21:50.405181: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270383v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:50.411699: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270383v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0058 seconds and 3.6 Mi memory
2023-07-05 13:21:50.434208: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270435v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:50.449654: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:50.727354: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 38.8467 seconds and 35.6 Mi memory
2023-07-05 13:21:50.727666: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:50.745017: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270435v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3102 seconds and 41.1 Mi memory
2023-07-05 13:21:50.745266: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270435v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:50.752671: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270435v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0069 seconds and 3.8 Mi memory
2023-07-05 13:21:50.774494: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:50.839630: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 38.7105 seconds and 33.1 Mi memory
2023-07-05 13:21:50.839915: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:51.047940: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3194 seconds and 3.7 Mi memory
2023-07-05 13:21:51.094328: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:51.118741: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2781 seconds and 3.7 Mi memory
2023-07-05 13:21:51.158843: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:51.212515: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 38.9961 seconds and 31.9 Mi memory
2023-07-05 13:21:51.212901: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:51.477434: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2637 seconds and 3.7 Mi memory
2023-07-05 13:21:51.531666: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:51.639751: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.1178 seconds and 24.8 Mi memory
2023-07-05 13:21:51.640020: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:51.959626: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3189 seconds and 3.7 Mi memory
2023-07-05 13:21:52.020137: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:52.220221: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 39.6704 seconds and 32.4 Mi memory
2023-07-05 13:21:52.220521: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:52.515712: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2944 seconds and 3.7 Mi memory
2023-07-05 13:21:52.582705: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:52.602630: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.686 seconds and 34.6 Mi memory
2023-07-05 13:21:52.602880: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:52.938414: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3347 seconds and 3.8 Mi memory
2023-07-05 13:21:53.021901: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:53.057891: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 40.0353 seconds and 30.4 Mi memory
2023-07-05 13:21:53.058185: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:53.202987: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 39.9508 seconds and 34.3 Mi memory
2023-07-05 13:21:53.203283: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:53.401544: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3426 seconds and 3.7 Mi memory
2023-07-05 13:21:53.466650: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:53.507561: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chrY.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 38.6046 seconds and 5.9 Mi memory
2023-07-05 13:21:53.507849: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chrY.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:53.550074: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.346 seconds and 3.8 Mi memory
2023-07-05 13:21:53.623378: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:53.686226: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chrY.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.1776 seconds and 3.8 Mi memory
2023-07-05 13:21:53.747080: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:54.169090: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 40.2201 seconds and 33.0 Mi memory
2023-07-05 13:21:54.169528: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:54.450865: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2804 seconds and 3.8 Mi memory
2023-07-05 13:21:54.493148: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:55.478054: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 40.1674 seconds and 36.0 Mi memory
2023-07-05 13:21:55.478491: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:55.761046: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2816 seconds and 3.8 Mi memory
2023-07-05 13:21:55.822098: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:55.845239: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.07 seconds and 45.1 Mi memory
2023-07-05 13:21:55.845488: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:56.359349: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6115 seconds and 32.6 Mi memory
2023-07-05 13:21:56.359615: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:56.645670: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7994 seconds and 3.8 Mi memory
2023-07-05 13:21:56.702965: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270522v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:56.714133: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3537 seconds and 3.7 Mi memory
2023-07-05 13:21:56.769101: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:57.021933: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270522v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.318 seconds and 41.1 Mi memory
2023-07-05 13:21:57.022200: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270522v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:57.029022: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270522v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0061 seconds and 3.8 Mi memory
2023-07-05 13:21:57.038125: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270366v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:57.345806: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270366v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3071 seconds and 41.1 Mi memory
2023-07-05 13:21:57.346071: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270366v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:57.351966: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270366v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0052 seconds and 3.7 Mi memory
2023-07-05 13:21:57.367358: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270378v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:57.629095: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2165 seconds and 46.0 Mi memory
2023-07-05 13:21:57.629370: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:57.673980: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270378v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.306 seconds and 41.1 Mi memory
2023-07-05 13:21:57.674235: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270378v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:57.681055: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270378v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0061 seconds and 3.7 Mi memory
2023-07-05 13:21:57.700014: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr1_KI270714v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:58.025256: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr1_KI270714v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3246 seconds and 41.1 Mi memory
2023-07-05 13:21:58.025532: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr1_KI270714v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:58.026318: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.3835 seconds and 71.4 Mi memory
2023-07-05 13:21:58.026581: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:58.031354: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr1_KI270714v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0052 seconds and 3.8 Mi memory
2023-07-05 13:21:58.052193: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr11_KI270721v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:58.364667: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr11_KI270721v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3118 seconds and 41.1 Mi memory
2023-07-05 13:21:58.365063: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr11_KI270721v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:58.370999: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr11_KI270721v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0052 seconds and 3.7 Mi memory
2023-07-05 13:21:58.393646: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr17_KI270729v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:58.740154: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr17_KI270729v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3459 seconds and 41.1 Mi memory
2023-07-05 13:21:58.740447: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr17_KI270729v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:58.749686: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr17_KI270729v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0085 seconds and 3.8 Mi memory
2023-07-05 13:21:58.765940: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270396v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:59.071464: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270396v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3049 seconds and 41.1 Mi memory
2023-07-05 13:21:59.071728: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270396v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:59.077248: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270396v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0048 seconds and 3.7 Mi memory
2023-07-05 13:21:59.097175: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:59.234028: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6038 seconds and 3.7 Mi memory
2023-07-05 13:21:59.546183: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chrUn_GL000214v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:59.554692: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chrUn_GL000214v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0076 seconds and 2.9 Mi memory
2023-07-05 13:21:59.554843: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chrUn_GL000214v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:59.561791: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chrUn_GL000214v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0065 seconds and 3.8 Mi memory
2023-07-05 13:21:59.835566: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8081 seconds and 3.7 Mi memory
2023-07-05 13:21:59.863300: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:21:59.932935: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chrY.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 34.025 seconds and 3.0 Mi memory
2023-07-05 13:21:59.933363: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chrY.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:21:59.941354: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chrY.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0073 seconds and 3.8 Mi memory
2023-07-05 13:21:59.990137: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:00.390059: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:00.823844: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 38.2576 seconds and 22.5 Mi memory
2023-07-05 13:22:00.824145: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:01.138176: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3133 seconds and 3.7 Mi memory
2023-07-05 13:22:01.201741: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:02.285243: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 36.3808 seconds and 39.0 Mi memory
2023-07-05 13:22:02.285367: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 35.9391 seconds and 33.1 Mi memory
2023-07-05 13:22:02.285551: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:02.285676: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:02.332280: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 36.4296 seconds and 26.1 Mi memory
2023-07-05 13:22:02.332581: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:02.365304: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 36.0083 seconds and 14.3 Mi memory
2023-07-05 13:22:02.365608: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:02.446215: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chrY.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 36.1573 seconds and 56.3 Mi memory
2023-07-05 13:22:02.446521: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chrY.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:02.460512: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 36.3944 seconds and 18.5 Mi memory
2023-07-05 13:22:02.460787: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:02.485421: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.4946 seconds and 32.1 Mi memory
2023-07-05 13:22:02.485686: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:02.537348: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2509 seconds and 3.7 Mi memory
2023-07-05 13:22:02.593820: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3076 seconds and 3.8 Mi memory
2023-07-05 13:22:02.595363: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:02.621278: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 36.6149 seconds and 18.2 Mi memory
2023-07-05 13:22:02.621575: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:02.637433: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3041 seconds and 3.8 Mi memory
2023-07-05 13:22:02.639443: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:02.651390: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.285 seconds and 3.8 Mi memory
2023-07-05 13:22:02.662232: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 36.578 seconds and 40.6 Mi memory
2023-07-05 13:22:02.662513: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:02.690834: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 36.6216 seconds and 41.4 Mi memory
2023-07-05 13:22:02.691265: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:02.712203: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 36.6489 seconds and 29.1 Mi memory
2023-07-05 13:22:02.712643: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:02.731070: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2695 seconds and 3.8 Mi memory
2023-07-05 13:22:02.731505: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:02.765005: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2783 seconds and 3.7 Mi memory
2023-07-05 13:22:02.776720: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:02.810173: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:02.822149: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:02.833908: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chrY.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3867 seconds and 3.6 Mi memory
2023-07-05 13:22:02.881440: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:02.914120: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2917 seconds and 3.8 Mi memory
2023-07-05 13:22:02.966107: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:02.986428: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3231 seconds and 3.7 Mi memory
2023-07-05 13:22:03.024259: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3108 seconds and 3.8 Mi memory
2023-07-05 13:22:03.026246: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3341 seconds and 3.6 Mi memory
2023-07-05 13:22:03.081835: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:03.147670: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:03.168300: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:03.343362: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.8928 seconds and 58.1 Mi memory
2023-07-05 13:22:03.343630: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:03.579234: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.4841 seconds and 177.5 Mi memory
2023-07-05 13:22:03.579504: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:04.012407: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.9146 seconds and 46.1 Mi memory
2023-07-05 13:22:04.012787: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:04.215147: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.6826 seconds and 133.2 Mi memory
2023-07-05 13:22:04.215429: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:04.216363: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.0567 seconds and 108.7 Mi memory
2023-07-05 13:22:04.216623: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:04.583550: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5699 seconds and 3.7 Mi memory
2023-07-05 13:22:04.647525: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270393v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:04.660203: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3157 seconds and 3.7 Mi memory
2023-07-05 13:22:04.883437: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3031 seconds and 3.8 Mi memory
2023-07-05 13:22:04.968325: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270393v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.32 seconds and 41.1 Mi memory
2023-07-05 13:22:04.968580: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270393v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:04.977561: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270393v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0083 seconds and 3.7 Mi memory
2023-07-05 13:22:05.031085: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr17_KI270730v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:05.118799: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.0977 seconds and 55.8 Mi memory
2023-07-05 13:22:05.119189: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:05.121792: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chrUn_GL000214v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:05.133662: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chrUn_GL000214v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.011 seconds and 3.0 Mi memory
2023-07-05 13:22:05.133829: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chrUn_GL000214v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:05.138678: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chrUn_GL000214v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0044 seconds and 3.8 Mi memory
2023-07-05 13:22:05.342518: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr17_KI270730v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3109 seconds and 41.1 Mi memory
2023-07-05 13:22:05.342782: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr17_KI270730v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:05.349706: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr17_KI270730v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0062 seconds and 3.7 Mi memory
2023-07-05 13:22:05.358225: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4941 seconds and 34.6 Mi memory
2023-07-05 13:22:05.358472: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:05.400784: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:05.427624: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.844 seconds and 59.4 Mi memory
2023-07-05 13:22:05.427995: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:05.563466: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3473 seconds and 3.8 Mi memory
2023-07-05 13:22:05.593461: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chrUn_KI270438v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:05.604585: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chrUn_KI270438v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0098 seconds and 3.0 Mi memory
2023-07-05 13:22:05.604756: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chrUn_KI270438v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:05.611696: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chrUn_KI270438v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0065 seconds and 3.8 Mi memory
2023-07-05 13:22:05.623418: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.6007 seconds and 49.7 Mi memory
2023-07-05 13:22:05.623680: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:05.651010: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.7688 seconds and 44.7 Mi memory
2023-07-05 13:22:05.651267: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:05.710009: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:05.723057: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5055 seconds and 3.6 Mi memory
2023-07-05 13:22:05.798962: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4077 seconds and 55.8 Mi memory
2023-07-05 13:22:05.799231: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:05.918324: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:05.982954: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3309 seconds and 3.7 Mi memory
2023-07-05 13:22:06.111282: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7521 seconds and 3.7 Mi memory
2023-07-05 13:22:06.170533: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:06.236350: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.6122 seconds and 121.0 Mi memory
2023-07-05 13:22:06.236704: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:06.343132: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:06.429534: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.9622 seconds and 57.3 Mi memory
2023-07-05 13:22:06.429781: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:06.460425: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.1164 seconds and 3.0 Mi memory
2023-07-05 13:22:06.460716: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:06.482797: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0213 seconds and 3.7 Mi memory
2023-07-05 13:22:06.486803: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6868 seconds and 3.7 Mi memory
2023-07-05 13:22:06.517967: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3978 seconds and 3.7 Mi memory
2023-07-05 13:22:06.525691: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:06.648483: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:06.736517: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0873 seconds and 3.1 Mi memory
2023-07-05 13:22:06.736703: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:06.754129: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0169 seconds and 3.8 Mi memory
2023-07-05 13:22:06.804463: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:06.821948: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:06.912837: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:07.210859: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chrUn_KI270438v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:07.228792: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chrUn_KI270438v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0169 seconds and 2.9 Mi memory
2023-07-05 13:22:07.228950: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chrUn_KI270438v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:07.235689: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chrUn_KI270438v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0062 seconds and 3.7 Mi memory
2023-07-05 13:22:07.256372: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:07.262805: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8339 seconds and 3.8 Mi memory
2023-07-05 13:22:07.349590: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7251 seconds and 3.8 Mi memory
2023-07-05 13:22:07.411661: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.9176 seconds and 71.2 Mi memory
2023-07-05 13:22:07.411924: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:07.972864: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7353 seconds and 3.7 Mi memory
2023-07-05 13:22:08.133361: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chrUn_KI270438v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:08.142744: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chrUn_KI270438v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0083 seconds and 3.1 Mi memory
2023-07-05 13:22:08.142892: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chrUn_KI270438v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:08.147728: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chrUn_KI270438v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0043 seconds and 3.7 Mi memory
2023-07-05 13:22:08.164983: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7344 seconds and 3.7 Mi memory
2023-07-05 13:22:08.272620: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:08.349725: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:08.635620: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.8126 seconds and 102.0 Mi memory
2023-07-05 13:22:08.636006: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:08.916028: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:09.077207: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:09.191911: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7791 seconds and 3.7 Mi memory
2023-07-05 13:22:09.544904: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1435 seconds and 43.5 Mi memory
2023-07-05 13:22:09.545169: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:09.688419: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.9184 seconds and 53.3 Mi memory
2023-07-05 13:22:09.688685: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:09.814663: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:09.992729: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4468 seconds and 3.8 Mi memory
2023-07-05 13:22:10.003960: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.367 seconds and 3.8 Mi memory
2023-07-05 13:22:10.046344: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:10.473558: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:11.202176: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5126 seconds and 3.7 Mi memory
2023-07-05 13:22:11.216136: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5055 seconds and 25.5 Mi memory
2023-07-05 13:22:11.216415: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:11.431397: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5119 seconds and 58.3 Mi memory
2023-07-05 13:22:11.431667: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:11.601491: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chrUn_GL000214v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:11.611115: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chrUn_GL000214v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0086 seconds and 3.1 Mi memory
2023-07-05 13:22:11.611262: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chrUn_GL000214v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:11.615873: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chrUn_GL000214v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0042 seconds and 3.7 Mi memory
2023-07-05 13:22:11.817059: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5998 seconds and 3.7 Mi memory
2023-07-05 13:22:11.932882: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:11.935025: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:12.027317: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5948 seconds and 3.7 Mi memory
2023-07-05 13:22:12.110363: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:12.263960: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4409 seconds and 33.6 Mi memory
2023-07-05 13:22:12.264244: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:12.360473: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4467 seconds and 49.0 Mi memory
2023-07-05 13:22:12.360745: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:12.883284: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6263 seconds and 28.4 Mi memory
2023-07-05 13:22:12.883555: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:13.047924: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7829 seconds and 3.7 Mi memory
2023-07-05 13:22:13.149880: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:13.168473: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8069 seconds and 3.7 Mi memory
2023-07-05 13:22:13.248237: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:13.503208: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6188 seconds and 3.7 Mi memory
2023-07-05 13:22:13.571233: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:13.846878: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.6443 seconds and 61.4 Mi memory
2023-07-05 13:22:13.847157: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:13.848902: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4978 seconds and 25.9 Mi memory
2023-07-05 13:22:13.849174: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:13.866385: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.593 seconds and 30.8 Mi memory
2023-07-05 13:22:13.866767: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:14.492929: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5759 seconds and 57.9 Mi memory
2023-07-05 13:22:14.493215: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:14.623037: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7731 seconds and 3.7 Mi memory
2023-07-05 13:22:14.648302: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7806 seconds and 3.6 Mi memory
2023-07-05 13:22:14.720996: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:14.771250: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:14.853319: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.775 seconds and 51.7 Mi memory
2023-07-05 13:22:14.853589: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:15.082557: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.4864 seconds and 77.6 Mi memory
2023-07-05 13:22:15.082951: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:15.137547: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6435 seconds and 3.7 Mi memory
2023-07-05 13:22:15.138856: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.4986 seconds and 78.8 Mi memory
2023-07-05 13:22:15.139234: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:15.241965: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:15.380110: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.5571 seconds and 125.3 Mi memory
2023-07-05 13:22:15.380411: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:15.382062: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5662 seconds and 45.5 Mi memory
2023-07-05 13:22:15.382320: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:15.420305: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.6092 seconds and 39.8 Mi memory
2023-07-05 13:22:15.420568: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:15.506910: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.7746 seconds and 51.4 Mi memory
2023-07-05 13:22:15.507189: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:15.527529: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6796 seconds and 3.8 Mi memory
2023-07-05 13:22:15.565249: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.7876 seconds and 55.3 Mi memory
2023-07-05 13:22:15.565516: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:15.566438: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.5995 seconds and 59.6 Mi memory
2023-07-05 13:22:15.566697: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:15.642371: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.473 seconds and 60.7 Mi memory
2023-07-05 13:22:15.642642: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:15.724658: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8702 seconds and 3.7 Mi memory
2023-07-05 13:22:15.855252: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.7067 seconds and 63.0 Mi memory
2023-07-05 13:22:15.855518: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:15.922149: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4475 seconds and 23.8 Mi memory
2023-07-05 13:22:15.922417: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:15.927217: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:16.026013: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chrUn_KI270438v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:16.036526: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chrUn_KI270438v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0093 seconds and 3.1 Mi memory
2023-07-05 13:22:16.036690: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chrUn_KI270438v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:16.041349: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chrUn_KI270438v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0042 seconds and 3.8 Mi memory
2023-07-05 13:22:16.045065: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6621 seconds and 3.8 Mi memory
2023-07-05 13:22:16.115967: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:16.173632: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.091 seconds and 64.8 Mi memory
2023-07-05 13:22:16.173893: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:16.191776: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:16.609906: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5261 seconds and 3.8 Mi memory
2023-07-05 13:22:16.663744: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7405 seconds and 3.8 Mi memory
2023-07-05 13:22:16.710232: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.6631 seconds and 57.0 Mi memory
2023-07-05 13:22:16.710492: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:16.739536: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3182 seconds and 3.7 Mi memory
2023-07-05 13:22:16.793540: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:17.005403: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8652 seconds and 3.8 Mi memory
2023-07-05 13:22:17.040091: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4738 seconds and 3.7 Mi memory
2023-07-05 13:22:17.162907: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7817 seconds and 3.8 Mi memory
2023-07-05 13:22:17.249869: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7419 seconds and 3.7 Mi memory
2023-07-05 13:22:17.279917: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6365 seconds and 3.8 Mi memory
2023-07-05 13:22:17.380140: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8126 seconds and 3.8 Mi memory
2023-07-05 13:22:17.421794: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5654 seconds and 3.8 Mi memory
2023-07-05 13:22:17.643460: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.7098 seconds and 59.5 Mi memory
2023-07-05 13:22:17.643719: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:17.645475: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9343 seconds and 3.8 Mi memory
2023-07-05 13:22:17.715727: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:17.733809: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr17_GL000205v2_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:17.935211: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7606 seconds and 3.7 Mi memory
2023-07-05 13:22:18.053468: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:18.061357: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr17_GL000205v2_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3264 seconds and 41.3 Mi memory
2023-07-05 13:22:18.061712: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr17_GL000205v2_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:18.069184: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr17_GL000205v2_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0068 seconds and 3.8 Mi memory
2023-07-05 13:22:18.085018: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270312v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:18.225487: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chrUn_KI270743v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:18.234694: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chrUn_KI270743v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0081 seconds and 2.9 Mi memory
2023-07-05 13:22:18.234835: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chrUn_KI270743v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:18.239388: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chrUn_KI270743v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0042 seconds and 3.7 Mi memory
2023-07-05 13:22:18.272011: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6274 seconds and 3.8 Mi memory
2023-07-05 13:22:18.356994: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:18.385982: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270312v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3004 seconds and 41.1 Mi memory
2023-07-05 13:22:18.386323: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270312v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:18.392056: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270312v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.005 seconds and 3.7 Mi memory
2023-07-05 13:22:18.417089: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:18.437652: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270757v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:18.439868: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:18.458173: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:18.485746: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chrUn_KI270438v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:18.503005: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chrUn_KI270438v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0161 seconds and 3.1 Mi memory
2023-07-05 13:22:18.503176: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chrUn_KI270438v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:18.509360: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chrUn_KI270438v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0058 seconds and 3.8 Mi memory
2023-07-05 13:22:18.565511: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:18.570378: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.1297 seconds and 2.9 Mi memory
2023-07-05 13:22:18.570607: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:18.592789: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0216 seconds and 3.8 Mi memory
2023-07-05 13:22:18.621377: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:18.625254: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:18.632960: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:18.642244: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:18.740419: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270757v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3021 seconds and 41.1 Mi memory
2023-07-05 13:22:18.740676: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270757v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:18.747241: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270757v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0059 seconds and 3.7 Mi memory
2023-07-05 13:22:18.794675: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr4_GL000008v2_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:18.862349: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:19.006746: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.8353 seconds and 186.3 Mi memory
2023-07-05 13:22:19.007009: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:19.118879: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr4_GL000008v2_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3235 seconds and 41.4 Mi memory
2023-07-05 13:22:19.119252: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr4_GL000008v2_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:19.126278: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr4_GL000008v2_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0063 seconds and 3.8 Mi memory
2023-07-05 13:22:19.134013: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270387v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:19.434780: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270387v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3002 seconds and 41.1 Mi memory
2023-07-05 13:22:19.435038: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270387v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:19.441549: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270387v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0058 seconds and 3.7 Mi memory
2023-07-05 13:22:19.449165: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270302v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:19.752716: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270302v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.303 seconds and 41.1 Mi memory
2023-07-05 13:22:19.752976: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270302v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:19.759438: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270302v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0058 seconds and 3.8 Mi memory
2023-07-05 13:22:19.767154: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270429v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:20.069460: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270429v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3016 seconds and 41.1 Mi memory
2023-07-05 13:22:20.069719: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270429v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:20.076236: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270429v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0058 seconds and 3.7 Mi memory
2023-07-05 13:22:20.084325: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270467v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:20.387340: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270467v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3023 seconds and 41.1 Mi memory
2023-07-05 13:22:20.387596: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270467v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:20.394050: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270467v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0058 seconds and 3.8 Mi memory
2023-07-05 13:22:20.426072: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:20.702856: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6951 seconds and 3.7 Mi memory
2023-07-05 13:22:21.368041: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:21.615796: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.0895 seconds and 53.5 Mi memory
2023-07-05 13:22:21.616075: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:21.718723: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.602 seconds and 35.4 Mi memory
2023-07-05 13:22:21.719100: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:22.182240: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.071 seconds and 50.1 Mi memory
2023-07-05 13:22:22.182517: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:22.244277: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.4392 seconds and 74.8 Mi memory
2023-07-05 13:22:22.244535: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:22.318971: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.599 seconds and 3.8 Mi memory
2023-07-05 13:22:22.379326: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4435 seconds and 20.3 Mi memory
2023-07-05 13:22:22.379573: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:22.399241: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:23.156613: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4397 seconds and 34.6 Mi memory
2023-07-05 13:22:23.157018: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:23.301157: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.052 seconds and 49.8 Mi memory
2023-07-05 13:22:23.301424: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:23.327323: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1765 seconds and 81.5 Mi memory
2023-07-05 13:22:23.327588: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:23.473868: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0935 seconds and 3.8 Mi memory
2023-07-05 13:22:23.507352: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4523 seconds and 45.2 Mi memory
2023-07-05 13:22:23.507625: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:23.547827: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3645 seconds and 3.8 Mi memory
2023-07-05 13:22:23.593050: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:23.626290: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0095 seconds and 3.7 Mi memory
2023-07-05 13:22:23.674637: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:23.830536: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.2584 seconds and 18.4 Mi memory
2023-07-05 13:22:23.830902: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:23.831306: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3725 seconds and 34.9 Mi memory
2023-07-05 13:22:23.831563: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:23.860477: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:23.861383: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.616 seconds and 3.7 Mi memory
2023-07-05 13:22:23.929052: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3071 seconds and 31.4 Mi memory
2023-07-05 13:22:23.929312: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:23.984592: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8267 seconds and 3.7 Mi memory
2023-07-05 13:22:24.039288: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6812 seconds and 59.1 Mi memory
2023-07-05 13:22:24.039553: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:24.067141: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6488 seconds and 52.3 Mi memory
2023-07-05 13:22:24.067401: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:24.096091: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4621 seconds and 25.6 Mi memory
2023-07-05 13:22:24.096489: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:24.168895: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:24.170093: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6035 seconds and 33.1 Mi memory
2023-07-05 13:22:24.170300: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:24.189454: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:24.276748: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6503 seconds and 35.7 Mi memory
2023-07-05 13:22:24.277142: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:24.293855: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7854 seconds and 3.8 Mi memory
2023-07-05 13:22:24.371752: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0433 seconds and 3.7 Mi memory
2023-07-05 13:22:24.401333: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:24.479404: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:24.492488: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5624 seconds and 3.7 Mi memory
2023-07-05 13:22:24.526940: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6636 seconds and 27.5 Mi memory
2023-07-05 13:22:24.527315: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:24.565417: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:24.585903: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7534 seconds and 3.7 Mi memory
2023-07-05 13:22:24.665405: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3631 seconds and 3.8 Mi memory
2023-07-05 13:22:24.708279: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:24.785061: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7168 seconds and 3.8 Mi memory
2023-07-05 13:22:24.824686: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:24.838846: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7985 seconds and 3.7 Mi memory
2023-07-05 13:22:24.883114: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7858 seconds and 3.8 Mi memory
2023-07-05 13:22:24.910919: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6329 seconds and 3.7 Mi memory
2023-07-05 13:22:24.951214: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:24.991115: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.82 seconds and 3.8 Mi memory
2023-07-05 13:22:24.997345: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.2755 seconds and 27.3 Mi memory
2023-07-05 13:22:24.997599: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:25.013604: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:25.073558: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:25.084015: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:25.125697: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:25.165855: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6376 seconds and 3.7 Mi memory
2023-07-05 13:22:25.247242: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.0045 seconds and 59.1 Mi memory
2023-07-05 13:22:25.247493: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:25.275842: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:25.282937: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5109 seconds and 16.6 Mi memory
2023-07-05 13:22:25.283187: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:25.310479: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4786 seconds and 3.7 Mi memory
2023-07-05 13:22:25.443944: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:26.110434: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1823 seconds and 27.6 Mi memory
2023-07-05 13:22:26.110699: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:26.318222: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0342 seconds and 3.7 Mi memory
2023-07-05 13:22:26.383745: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3853 seconds and 3.6 Mi memory
2023-07-05 13:22:26.433967: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:26.513875: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:26.580314: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.3873 seconds and 27.2 Mi memory
2023-07-05 13:22:26.580697: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:26.707311: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4591 seconds and 3.8 Mi memory
2023-07-05 13:22:26.791800: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9967 seconds and 49.7 Mi memory
2023-07-05 13:22:26.792060: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:26.842951: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:26.977660: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6084 seconds and 93.5 Mi memory
2023-07-05 13:22:26.978042: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:27.224693: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1131 seconds and 3.8 Mi memory
2023-07-05 13:22:27.356445: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:27.602618: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.021 seconds and 3.8 Mi memory
2023-07-05 13:22:27.724613: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:27.812238: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0193 seconds and 3.7 Mi memory
2023-07-05 13:22:27.830529: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8516 seconds and 3.7 Mi memory
2023-07-05 13:22:27.933651: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:27.947653: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:29.241745: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3801 seconds and 18.7 Mi memory
2023-07-05 13:22:29.242150: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:29.402437: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.2117 seconds and 24.1 Mi memory
2023-07-05 13:22:29.402832: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:29.799659: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5565 seconds and 3.7 Mi memory
2023-07-05 13:22:29.930338: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5266 seconds and 3.6 Mi memory
2023-07-05 13:22:30.027834: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:30.129346: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:32.991536: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5913 seconds and 29.2 Mi memory
2023-07-05 13:22:32.991915: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:33.830059: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.1872 seconds and 67.1 Mi memory
2023-07-05 13:22:33.830412: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:34.011023: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0182 seconds and 3.7 Mi memory
2023-07-05 13:22:34.123462: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:34.523060: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1209 seconds and 28.9 Mi memory
2023-07-05 13:22:34.523333: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:34.547378: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.3775 seconds and 51.3 Mi memory
2023-07-05 13:22:34.547646: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:34.822380: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1131 seconds and 50.7 Mi memory
2023-07-05 13:22:34.822764: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:34.963215: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.397 seconds and 22.0 Mi memory
2023-07-05 13:22:34.963491: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:34.987384: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9728 seconds and 62.7 Mi memory
2023-07-05 13:22:34.987754: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:35.135148: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.0502 seconds and 44.3 Mi memory
2023-07-05 13:22:35.135401: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:35.182214: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.23 seconds and 26.3 Mi memory
2023-07-05 13:22:35.182593: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:35.229403: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.2005 seconds and 33.8 Mi memory
2023-07-05 13:22:35.229680: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:35.261024: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.1308 seconds and 51.7 Mi memory
2023-07-05 13:22:35.261281: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:35.335963: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.059 seconds and 61.7 Mi memory
2023-07-05 13:22:35.336231: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:35.433297: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.3586 seconds and 28.1 Mi memory
2023-07-05 13:22:35.433558: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:35.476473: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.0498 seconds and 43.5 Mi memory
2023-07-05 13:22:35.476727: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:35.667066: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1429 seconds and 3.7 Mi memory
2023-07-05 13:22:35.748783: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6222 seconds and 26.4 Mi memory
2023-07-05 13:22:35.749166: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:35.810098: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:35.910480: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6799 seconds and 3.7 Mi memory
2023-07-05 13:22:35.954143: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4057 seconds and 3.6 Mi memory
2023-07-05 13:22:35.958310: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1271 seconds and 3.6 Mi memory
2023-07-05 13:22:36.012796: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7507 seconds and 3.7 Mi memory
2023-07-05 13:22:36.053934: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr17_KI270730v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:36.065531: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr17_KI270730v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0109 seconds and 3.0 Mi memory
2023-07-05 13:22:36.065681: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr17_KI270730v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:36.069150: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:36.073651: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr17_KI270730v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0076 seconds and 3.7 Mi memory
2023-07-05 13:22:36.109276: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:36.131033: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:36.204313: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:36.314773: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4911 seconds and 3.8 Mi memory
2023-07-05 13:22:36.340194: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3758 seconds and 3.8 Mi memory
2023-07-05 13:22:36.368017: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1846 seconds and 3.8 Mi memory
2023-07-05 13:22:36.446307: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:36.460871: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3246 seconds and 3.7 Mi memory
2023-07-05 13:22:36.468556: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0342 seconds and 3.7 Mi memory
2023-07-05 13:22:36.474142: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:36.513373: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:36.528794: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5401 seconds and 3.6 Mi memory
2023-07-05 13:22:36.598557: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:36.616130: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:36.663893: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:36.756875: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4199 seconds and 3.8 Mi memory
2023-07-05 13:22:36.859731: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:37.254652: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5045 seconds and 3.8 Mi memory
2023-07-05 13:22:37.367619: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:37.452268: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9748 seconds and 3.6 Mi memory
2023-07-05 13:22:37.603262: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:37.795650: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.847 seconds and 148.9 Mi memory
2023-07-05 13:22:37.796035: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:38.965390: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.2898 seconds and 92.6 Mi memory
2023-07-05 13:22:38.965776: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:39.205631: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4087 seconds and 3.8 Mi memory
2023-07-05 13:22:39.287577: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:39.302450: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.7086 seconds and 64.3 Mi memory
2023-07-05 13:22:39.302709: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:39.584727: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.1042 seconds and 74.5 Mi memory
2023-07-05 13:22:39.585114: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:40.147855: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.322 seconds and 70.3 Mi memory
2023-07-05 13:22:40.148284: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:40.303951: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1721 seconds and 36.7 Mi memory
2023-07-05 13:22:40.304242: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:40.333742: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.2239 seconds and 38.2 Mi memory
2023-07-05 13:22:40.333999: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:40.552865: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.1078 seconds and 54.7 Mi memory
2023-07-05 13:22:40.553155: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:40.795970: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4909 seconds and 3.7 Mi memory
2023-07-05 13:22:40.846503: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:40.943229: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6084 seconds and 3.7 Mi memory
2023-07-05 13:22:40.993917: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:41.108106: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8045 seconds and 3.8 Mi memory
2023-07-05 13:22:41.197218: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.5929 seconds and 43.9 Mi memory
2023-07-05 13:22:41.197476: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:41.202717: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.236 seconds and 3.7 Mi memory
2023-07-05 13:22:41.414322: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8284 seconds and 3.6 Mi memory
2023-07-05 13:22:41.467985: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.2622 seconds and 43.0 Mi memory
2023-07-05 13:22:41.468251: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:41.485159: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:41.635157: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:41.640399: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.2054 seconds and 74.1 Mi memory
2023-07-05 13:22:41.640642: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:41.758017: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:41.786846: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5886 seconds and 3.8 Mi memory
2023-07-05 13:22:41.852104: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_GL000219v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:42.045364: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5763 seconds and 3.6 Mi memory
2023-07-05 13:22:42.075060: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.5601 seconds and 91.1 Mi memory
2023-07-05 13:22:42.075323: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:42.220269: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_GL000219v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3674 seconds and 41.1 Mi memory
2023-07-05 13:22:42.220529: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_GL000219v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:42.226712: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_GL000219v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0055 seconds and 3.7 Mi memory
2023-07-05 13:22:42.243922: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.3997 seconds and 86.9 Mi memory
2023-07-05 13:22:42.244307: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:42.269991: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:42.288598: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:42.430840: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2817 seconds and 3.8 Mi memory
2023-07-05 13:22:42.654098: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:42.724565: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1706 seconds and 3.6 Mi memory
2023-07-05 13:22:42.848829: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.123 seconds and 62.0 Mi memory
2023-07-05 13:22:42.849095: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:42.859699: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.5022 seconds and 69.1 Mi memory
2023-07-05 13:22:42.859960: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:43.057291: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:43.082094: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.1474 seconds and 112.5 Mi memory
2023-07-05 13:22:43.082353: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:43.608319: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5321 seconds and 3.8 Mi memory
2023-07-05 13:22:43.635403: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.994 seconds and 3.8 Mi memory
2023-07-05 13:22:43.981881: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:43.991331: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:44.398531: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5486 seconds and 3.7 Mi memory
2023-07-05 13:22:44.478011: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6174 seconds and 3.7 Mi memory
2023-07-05 13:22:44.541916: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2967 seconds and 3.6 Mi memory
2023-07-05 13:22:44.689335: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:44.714020: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:44.737802: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:44.941767: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8586 seconds and 3.7 Mi memory
2023-07-05 13:22:45.143533: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:46.837136: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3507 seconds and 36.4 Mi memory
2023-07-05 13:22:46.837424: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:46.866004: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.2297 seconds and 36.1 Mi memory
2023-07-05 13:22:46.866265: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:46.926385: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.1674 seconds and 38.2 Mi memory
2023-07-05 13:22:46.926606: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:47.124405: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chrY.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:47.423549: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.5762 seconds and 41.1 Mi memory
2023-07-05 13:22:47.423812: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:47.439347: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.1498 seconds and 27.3 Mi memory
2023-07-05 13:22:47.439610: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:47.607670: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7406 seconds and 3.7 Mi memory
2023-07-05 13:22:47.625833: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7876 seconds and 3.8 Mi memory
2023-07-05 13:22:47.679705: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7525 seconds and 3.7 Mi memory
2023-07-05 13:22:47.716329: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.7214 seconds and 32.9 Mi memory
2023-07-05 13:22:47.716702: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:47.833354: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:47.857016: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.2019 seconds and 53.2 Mi memory
2023-07-05 13:22:47.857290: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:47.880267: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:47.877666: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chrY.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:47.897460: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:47.992771: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chrY.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:48.156059: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7156 seconds and 3.8 Mi memory
2023-07-05 13:22:48.233526: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:48.281724: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.2231 seconds and 29.5 Mi memory
2023-07-05 13:22:48.282109: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:48.291977: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8673 seconds and 3.8 Mi memory
2023-07-05 13:22:48.398659: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:48.413511: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5554 seconds and 3.7 Mi memory
2023-07-05 13:22:48.592060: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:48.614277: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8967 seconds and 3.7 Mi memory
2023-07-05 13:22:48.726716: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:48.827808: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5448 seconds and 3.7 Mi memory
2023-07-05 13:22:48.964369: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:49.270128: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.2775 seconds and 29.5 Mi memory
2023-07-05 13:22:49.270383: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:49.458334: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4751 seconds and 32.3 Mi memory
2023-07-05 13:22:49.458596: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:49.793002: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.6685 seconds and 56.0 Mi memory
2023-07-05 13:22:49.793269: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:49.940135: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.2012 seconds and 41.0 Mi memory
2023-07-05 13:22:49.940416: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:49.956930: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.6863 seconds and 59.2 Mi memory
2023-07-05 13:22:49.957193: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:49.961627: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.2711 seconds and 33.6 Mi memory
2023-07-05 13:22:49.961997: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:50.024749: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7535 seconds and 3.8 Mi memory
2023-07-05 13:22:50.183098: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7237 seconds and 3.6 Mi memory
2023-07-05 13:22:50.213824: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:50.326615: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.1821 seconds and 41.0 Mi memory
2023-07-05 13:22:50.326968: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:50.358038: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:50.393160: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6781 seconds and 48.6 Mi memory
2023-07-05 13:22:50.393561: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:50.505268: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5641 seconds and 3.7 Mi memory
2023-07-05 13:22:50.704125: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7412 seconds and 3.7 Mi memory
2023-07-05 13:22:50.773916: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:50.877275: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5494 seconds and 3.7 Mi memory
2023-07-05 13:22:50.981653: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5872 seconds and 3.8 Mi memory
2023-07-05 13:22:51.003971: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:51.131872: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:51.148801: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:51.236629: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2787 seconds and 3.6 Mi memory
2023-07-05 13:22:51.282941: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.4718 seconds and 75.4 Mi memory
2023-07-05 13:22:51.283326: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:51.296178: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chrUn_GL000224v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:51.330691: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270588v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:51.571134: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.5009 seconds and 104.9 Mi memory
2023-07-05 13:22:51.571408: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:51.647937: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270588v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3164 seconds and 41.1 Mi memory
2023-07-05 13:22:51.648221: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270588v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:51.655049: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270588v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0061 seconds and 3.8 Mi memory
2023-07-05 13:22:51.695094: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270423v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:51.778396: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.1136 seconds and 117.9 Mi memory
2023-07-05 13:22:51.778749: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:51.791427: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.2769 seconds and 70.1 Mi memory
2023-07-05 13:22:51.791696: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:51.835463: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.3598 seconds and 88.9 Mi memory
2023-07-05 13:22:51.835734: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:51.972371: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.525 seconds and 65.8 Mi memory
2023-07-05 13:22:51.972642: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:52.047270: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270423v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3512 seconds and 41.1 Mi memory
2023-07-05 13:22:52.047534: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270423v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:52.054189: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270423v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.006 seconds and 3.7 Mi memory
2023-07-05 13:22:52.080218: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270744v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:52.106399: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.3123 seconds and 3.7 Mi memory
2023-07-05 13:22:52.234842: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chrY.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:52.258221: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.6411 seconds and 120.8 Mi memory
2023-07-05 13:22:52.258491: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:52.285601: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.6861 seconds and 73.3 Mi memory
2023-07-05 13:22:52.285861: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:52.404766: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270744v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.324 seconds and 41.1 Mi memory
2023-07-05 13:22:52.405032: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270744v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:52.410458: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:52.411197: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270744v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0056 seconds and 3.8 Mi memory
2023-07-05 13:22:52.458147: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270362v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:52.486668: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.6258 seconds and 82.9 Mi memory
2023-07-05 13:22:52.487041: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:52.500503: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.2661 seconds and 32.7 Mi memory
2023-07-05 13:22:52.500752: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:52.767557: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270362v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3087 seconds and 41.1 Mi memory
2023-07-05 13:22:52.767817: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270362v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:52.774499: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270362v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.006 seconds and 3.7 Mi memory
2023-07-05 13:22:52.785641: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270516v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:52.924280: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:52.924306: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:52.924321: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:52.934972: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:52.960663: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.126 seconds and 39.3 Mi memory
2023-07-05 13:22:52.961064: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:53.005377: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.124 seconds and 24.1 Mi memory
2023-07-05 13:22:53.005650: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:53.049820: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:53.050454: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:53.053756: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7695 seconds and 3.8 Mi memory
2023-07-05 13:22:53.081929: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.1832 seconds and 35.4 Mi memory
2023-07-05 13:22:53.082313: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:53.093719: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270516v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3075 seconds and 41.1 Mi memory
2023-07-05 13:22:53.093975: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270516v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:53.117619: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270516v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.018 seconds and 3.8 Mi memory
2023-07-05 13:22:53.129816: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:53.158290: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.7895 seconds and 81.8 Mi memory
2023-07-05 13:22:53.158548: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:53.182009: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270412v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:53.185812: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6842 seconds and 3.7 Mi memory
2023-07-05 13:22:53.253836: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:53.322704: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:53.358554: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:53.425214: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6327 seconds and 3.7 Mi memory
2023-07-05 13:22:53.492048: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270412v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3094 seconds and 41.1 Mi memory
2023-07-05 13:22:53.492316: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270412v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:53.502317: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270412v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0093 seconds and 3.8 Mi memory
2023-07-05 13:22:53.524819: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr1_KI270707v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:53.559801: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr14_KI270723v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:53.572843: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr2_KI270715v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:53.582758: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr2_KI270715v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.009 seconds and 3.1 Mi memory
2023-07-05 13:22:53.582916: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr2_KI270715v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:53.587485: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr2_KI270715v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0042 seconds and 3.8 Mi memory
2023-07-05 13:22:53.637250: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0651 seconds and 3.8 Mi memory
2023-07-05 13:22:53.639951: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8604 seconds and 3.8 Mi memory
2023-07-05 13:22:53.664136: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:53.668989: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6625 seconds and 3.7 Mi memory
2023-07-05 13:22:53.699286: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7373 seconds and 3.7 Mi memory
2023-07-05 13:22:53.705174: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.1122 seconds and 54.4 Mi memory
2023-07-05 13:22:53.705433: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:53.731303: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:53.759272: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.676 seconds and 3.7 Mi memory
2023-07-05 13:22:53.786692: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:53.864727: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:53.869955: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr14_KI270723v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3096 seconds and 41.1 Mi memory
2023-07-05 13:22:53.870196: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr14_KI270723v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:53.873836: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:53.876977: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr14_KI270723v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0061 seconds and 3.7 Mi memory
2023-07-05 13:22:53.900994: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:53.907259: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:54.003590: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:54.046213: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:54.098707: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2622 seconds and 3.8 Mi memory
2023-07-05 13:22:54.163617: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6757 seconds and 3.7 Mi memory
2023-07-05 13:22:54.227598: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5214 seconds and 3.7 Mi memory
2023-07-05 13:22:54.261163: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:54.294390: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:54.296260: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:54.303766: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.3303 seconds and 3.7 Mi memory
2023-07-05 13:22:54.322442: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0632 seconds and 3.8 Mi memory
2023-07-05 13:22:54.336409: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3711 seconds and 17.6 Mi memory
2023-07-05 13:22:54.336806: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:54.376398: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:54.514330: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:54.519916: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:54.603024: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:54.643234: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:54.655550: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:54.684370: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.3978 seconds and 3.8 Mi memory
2023-07-05 13:22:54.883370: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5457 seconds and 3.7 Mi memory
2023-07-05 13:22:54.884396: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.5959 seconds and 238.6 Mi memory
2023-07-05 13:22:54.884662: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:54.905344: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:54.959628: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:54.964125: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chrY.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:55.345918: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.1311 seconds and 45.5 Mi memory
2023-07-05 13:22:55.346182: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:55.448279: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2888 seconds and 3.8 Mi memory
2023-07-05 13:22:55.586698: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.2278 seconds and 21.4 Mi memory
2023-07-05 13:22:55.586953: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:55.680687: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:56.055039: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.708 seconds and 3.8 Mi memory
2023-07-05 13:22:56.092744: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3179 seconds and 54.4 Mi memory
2023-07-05 13:22:56.093001: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:56.128199: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.1231 seconds and 37.7 Mi memory
2023-07-05 13:22:56.128453: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:56.211472: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:56.259349: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.1097 seconds and 22.3 Mi memory
2023-07-05 13:22:56.259614: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:56.309741: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.722 seconds and 3.6 Mi memory
2023-07-05 13:22:56.412288: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:56.492567: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3595 seconds and 52.1 Mi memory
2023-07-05 13:22:56.492814: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:56.494872: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:56.807935: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7141 seconds and 3.7 Mi memory
2023-07-05 13:22:56.814752: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6855 seconds and 3.7 Mi memory
2023-07-05 13:22:56.942730: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:56.949724: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6893 seconds and 3.7 Mi memory
2023-07-05 13:22:56.959426: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:57.052025: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:57.149468: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.264 seconds and 3.7 Mi memory
2023-07-05 13:22:57.199003: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:57.228446: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7348 seconds and 3.6 Mi memory
2023-07-05 13:22:57.271127: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:57.321669: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:57.393744: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chrY.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:57.399406: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:57.706547: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:57.715076: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3034 seconds and 18.9 Mi memory
2023-07-05 13:22:57.715339: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:58.114401: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.2487 seconds and 19.2 Mi memory
2023-07-05 13:22:58.114663: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:58.129054: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.2269 seconds and 38.5 Mi memory
2023-07-05 13:22:58.129308: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:58.141221: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.2664 seconds and 34.6 Mi memory
2023-07-05 13:22:58.141416: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:58.476137: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.76 seconds and 3.7 Mi memory
2023-07-05 13:22:58.563184: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4477 seconds and 3.8 Mi memory
2023-07-05 13:22:58.581320: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4392 seconds and 3.8 Mi memory
2023-07-05 13:22:58.596328: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.219 seconds and 26.7 Mi memory
2023-07-05 13:22:58.596699: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:58.633313: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.2731 seconds and 25.6 Mi memory
2023-07-05 13:22:58.633563: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:58.639827: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:58.710298: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:58.742311: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6122 seconds and 3.7 Mi memory
2023-07-05 13:22:58.746961: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:58.827870: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:58.938355: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:58.981527: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:59.026099: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.361 seconds and 19.9 Mi memory
2023-07-05 13:22:59.026377: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:59.035487: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4379 seconds and 3.7 Mi memory
2023-07-05 13:22:59.078527: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:59.118367: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1571 seconds and 27.4 Mi memory
2023-07-05 13:22:59.118746: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:59.158699: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.1539 seconds and 65.8 Mi memory
2023-07-05 13:22:59.158958: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:59.196819: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5625 seconds and 3.8 Mi memory
2023-07-05 13:22:59.272303: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.2249 seconds and 36.9 Mi memory
2023-07-05 13:22:59.272689: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:59.289442: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:59.584592: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5575 seconds and 3.8 Mi memory
2023-07-05 13:22:59.704266: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5846 seconds and 3.7 Mi memory
2023-07-05 13:22:59.717552: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8097 seconds and 58.8 Mi memory
2023-07-05 13:22:59.717780: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:59.745197: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5854 seconds and 3.7 Mi memory
2023-07-05 13:22:59.797468: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:59.803086: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:59.805613: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.551 seconds and 38.9 Mi memory
2023-07-05 13:22:59.805870: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:59.836605: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3211 seconds and 29.0 Mi memory
2023-07-05 13:22:59.836975: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:59.852120: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.1954 seconds and 23.1 Mi memory
2023-07-05 13:22:59.852518: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:59.892277: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:22:59.907155: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3029 seconds and 34.7 Mi memory
2023-07-05 13:22:59.907502: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:22:59.989275: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3451 seconds and 19.9 Mi memory
2023-07-05 13:22:59.989539: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:00.085582: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.812 seconds and 3.7 Mi memory
2023-07-05 13:23:00.187685: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:00.271534: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3652 seconds and 43.6 Mi memory
2023-07-05 13:23:00.271936: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:00.368394: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1559 seconds and 31.8 Mi memory
2023-07-05 13:23:00.368796: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:00.398980: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5456 seconds and 3.8 Mi memory
2023-07-05 13:23:00.539034: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7011 seconds and 3.6 Mi memory
2023-07-05 13:23:00.591774: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:00.592860: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1796 seconds and 37.0 Mi memory
2023-07-05 13:23:00.593256: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:00.676043: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7678 seconds and 3.7 Mi memory
2023-07-05 13:23:00.696624: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9781 seconds and 3.7 Mi memory
2023-07-05 13:23:00.719689: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7294 seconds and 3.7 Mi memory
2023-07-05 13:23:00.777584: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9709 seconds and 3.7 Mi memory
2023-07-05 13:23:00.798064: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:00.813669: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270593v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:00.822081: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4524 seconds and 3.7 Mi memory
2023-07-05 13:23:00.918102: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:00.962842: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.2805 seconds and 26.6 Mi memory
2023-07-05 13:23:00.963109: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:01.004687: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:01.019228: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7464 seconds and 3.8 Mi memory
2023-07-05 13:23:01.031340: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:01.100533: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.14 seconds and 33.9 Mi memory
2023-07-05 13:23:01.100781: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:01.119527: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:01.125766: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1821 seconds and 63.0 Mi memory
2023-07-05 13:23:01.126013: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:01.129930: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270593v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3153 seconds and 41.1 Mi memory
2023-07-05 13:23:01.130265: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270593v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:01.135621: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270593v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0047 seconds and 3.7 Mi memory
2023-07-05 13:23:01.178020: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:01.182404: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270448v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:01.192265: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1392 seconds and 34.6 Mi memory
2023-07-05 13:23:01.192525: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:01.198780: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6046 seconds and 3.8 Mi memory
2023-07-05 13:23:01.250201: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:01.477000: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1543 seconds and 28.1 Mi memory
2023-07-05 13:23:01.477394: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:01.487063: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270448v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3041 seconds and 41.1 Mi memory
2023-07-05 13:23:01.487320: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270448v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:01.493205: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270448v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0052 seconds and 3.7 Mi memory
2023-07-05 13:23:01.526996: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270422v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:01.609456: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4161 seconds and 3.8 Mi memory
2023-07-05 13:23:01.663275: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:01.707825: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6062 seconds and 3.7 Mi memory
2023-07-05 13:23:01.729335: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7654 seconds and 3.7 Mi memory
2023-07-05 13:23:01.737966: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6113 seconds and 3.7 Mi memory
2023-07-05 13:23:01.761726: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:01.805172: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:01.829312: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270422v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3018 seconds and 41.1 Mi memory
2023-07-05 13:23:01.829559: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270422v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:01.836346: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270422v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0061 seconds and 3.8 Mi memory
2023-07-05 13:23:01.875954: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270330v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:01.918284: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:02.073572: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5953 seconds and 3.7 Mi memory
2023-07-05 13:23:02.122164: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:02.177173: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270330v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3006 seconds and 41.1 Mi memory
2023-07-05 13:23:02.177415: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270330v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:02.183736: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270330v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0056 seconds and 3.7 Mi memory
2023-07-05 13:23:02.204430: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr14_GL000009v2_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:02.527629: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr14_GL000009v2_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3225 seconds and 41.4 Mi memory
2023-07-05 13:23:02.528012: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr14_GL000009v2_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:02.535568: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr14_GL000009v2_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0063 seconds and 3.7 Mi memory
2023-07-05 13:23:02.562708: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270418v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:02.630455: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.2299 seconds and 82.1 Mi memory
2023-07-05 13:23:02.630728: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:02.873771: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270418v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3105 seconds and 41.1 Mi memory
2023-07-05 13:23:02.874024: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270418v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:02.880409: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270418v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0057 seconds and 3.8 Mi memory
2023-07-05 13:23:02.907620: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270391v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:03.192079: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5605 seconds and 3.7 Mi memory
2023-07-05 13:23:03.210291: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270391v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3019 seconds and 41.1 Mi memory
2023-07-05 13:23:03.210665: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270391v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:03.219824: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270391v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0084 seconds and 3.6 Mi memory
2023-07-05 13:23:03.247703: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270548v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:03.338272: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:03.551369: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270548v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.303 seconds and 41.1 Mi memory
2023-07-05 13:23:03.551624: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270548v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:03.558139: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270548v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0058 seconds and 3.7 Mi memory
2023-07-05 13:23:03.608536: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr1_KI270710v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:03.782913: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chrY.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:03.857195: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.1092 seconds and 19.8 Mi memory
2023-07-05 13:23:03.857572: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:03.912764: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr1_KI270710v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3037 seconds and 41.1 Mi memory
2023-07-05 13:23:03.913013: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr1_KI270710v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:03.919464: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr1_KI270710v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0058 seconds and 3.6 Mi memory
2023-07-05 13:23:03.953528: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:04.377012: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5186 seconds and 3.7 Mi memory
2023-07-05 13:23:04.421265: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.131 seconds and 18.7 Mi memory
2023-07-05 13:23:04.421514: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:04.455609: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:04.663389: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.2639 seconds and 65.0 Mi memory
2023-07-05 13:23:04.663657: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:04.936706: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5144 seconds and 3.8 Mi memory
2023-07-05 13:23:04.979620: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.252 seconds and 59.8 Mi memory
2023-07-05 13:23:04.979880: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:05.025792: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.1327 seconds and 30.4 Mi memory
2023-07-05 13:23:05.026141: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:05.026961: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:05.031460: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.2274 seconds and 28.5 Mi memory
2023-07-05 13:23:05.031711: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:05.236913: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.5962 seconds and 39.8 Mi memory
2023-07-05 13:23:05.237180: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:05.304923: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.1163 seconds and 33.6 Mi memory
2023-07-05 13:23:05.305193: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:05.343489: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.6323 seconds and 46.2 Mi memory
2023-07-05 13:23:05.343761: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:05.450977: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.6222 seconds and 44.7 Mi memory
2023-07-05 13:23:05.451237: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:05.670559: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.0779 seconds and 57.1 Mi memory
2023-07-05 13:23:05.670831: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:05.687640: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.6082 seconds and 42.6 Mi memory
2023-07-05 13:23:05.687895: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:05.708391: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6814 seconds and 3.8 Mi memory
2023-07-05 13:23:05.793296: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7607 seconds and 3.7 Mi memory
2023-07-05 13:23:05.812533: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:05.822433: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5165 seconds and 3.7 Mi memory
2023-07-05 13:23:05.878409: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:05.919187: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:05.991356: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.1923 seconds and 17.4 Mi memory
2023-07-05 13:23:05.991742: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:06.075108: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8371 seconds and 3.7 Mi memory
2023-07-05 13:23:06.088851: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.0565 seconds and 35.2 Mi memory
2023-07-05 13:23:06.089119: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:06.200440: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:06.206178: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.2003 seconds and 46.5 Mi memory
2023-07-05 13:23:06.206439: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:06.292785: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9482 seconds and 3.9 Mi memory
2023-07-05 13:23:06.308756: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8568 seconds and 3.8 Mi memory
2023-07-05 13:23:06.318622: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.1396 seconds and 41.6 Mi memory
2023-07-05 13:23:06.319005: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:06.320291: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6488 seconds and 3.7 Mi memory
2023-07-05 13:23:06.355807: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6672 seconds and 3.8 Mi memory
2023-07-05 13:23:06.392692: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.5943 seconds and 33.1 Mi memory
2023-07-05 13:23:06.393059: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:06.457131: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:06.627232: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:06.630400: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:06.680474: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:06.736802: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7441 seconds and 3.7 Mi memory
2023-07-05 13:23:06.762347: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6723 seconds and 3.7 Mi memory
2023-07-05 13:23:06.829313: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:06.847364: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:06.853581: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:06.906210: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:06.959431: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7522 seconds and 3.8 Mi memory
2023-07-05 13:23:06.966825: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.3023 seconds and 3.6 Mi memory
2023-07-05 13:23:07.032024: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.1127 seconds and 38.0 Mi memory
2023-07-05 13:23:07.032426: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:07.045293: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7254 seconds and 3.8 Mi memory
2023-07-05 13:23:07.094069: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:07.099699: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:07.128531: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:07.134023: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1533 seconds and 3.8 Mi memory
2023-07-05 13:23:07.159494: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:07.168314: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:07.296446: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:07.298820: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:07.310194: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9163 seconds and 3.7 Mi memory
2023-07-05 13:23:07.418166: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr4_GL000008v2_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:07.427851: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr4_GL000008v2_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0089 seconds and 3.1 Mi memory
2023-07-05 13:23:07.427996: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr4_GL000008v2_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:07.432872: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr4_GL000008v2_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0045 seconds and 3.7 Mi memory
2023-07-05 13:23:07.513363: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:07.530862: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.612 seconds and 36.2 Mi memory
2023-07-05 13:23:07.531125: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:07.550148: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5168 seconds and 3.6 Mi memory
2023-07-05 13:23:07.705976: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:08.008115: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.757 seconds and 18.7 Mi memory
2023-07-05 13:23:08.008392: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:08.070588: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:08.222693: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.5586 seconds and 41.6 Mi memory
2023-07-05 13:23:08.222981: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:08.224204: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chrY.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:08.240084: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.434 seconds and 56.3 Mi memory
2023-07-05 13:23:08.240354: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:08.455012: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.923 seconds and 3.7 Mi memory
2023-07-05 13:23:08.472164: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.133 seconds and 78.5 Mi memory
2023-07-05 13:23:08.472451: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:08.518249: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.7557 seconds and 29.1 Mi memory
2023-07-05 13:23:08.518502: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:08.657414: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.5343 seconds and 70.7 Mi memory
2023-07-05 13:23:08.657691: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:08.682058: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chrUn_KI270467v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:08.690708: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chrUn_KI270467v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0079 seconds and 3.0 Mi memory
2023-07-05 13:23:08.690850: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chrUn_KI270467v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:08.695459: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chrUn_KI270467v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0042 seconds and 3.7 Mi memory
2023-07-05 13:23:08.730074: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:08.768986: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.3125 seconds and 24.6 Mi memory
2023-07-05 13:23:08.769376: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:08.794787: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chrY.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:08.887543: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:08.928792: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6876 seconds and 3.7 Mi memory
2023-07-05 13:23:08.940407: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7167 seconds and 3.7 Mi memory
2023-07-05 13:23:08.976910: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9676 seconds and 3.8 Mi memory
2023-07-05 13:23:09.211157: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7379 seconds and 3.8 Mi memory
2023-07-05 13:23:09.255838: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.2282 seconds and 46.5 Mi memory
2023-07-05 13:23:09.256079: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:09.290413: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:09.328652: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:09.357167: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:09.364456: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:09.378421: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6082 seconds and 3.8 Mi memory
2023-07-05 13:23:09.444535: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:09.459612: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9403 seconds and 3.6 Mi memory
2023-07-05 13:23:09.556109: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8977 seconds and 3.8 Mi memory
2023-07-05 13:23:09.760991: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:09.766180: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:09.838937: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5821 seconds and 3.6 Mi memory
2023-07-05 13:23:09.849885: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:09.891932: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:09.987967: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1741 seconds and 32.6 Mi memory
2023-07-05 13:23:09.988359: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:10.094030: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.2147 seconds and 31.3 Mi memory
2023-07-05 13:23:10.094306: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:10.105126: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1851 seconds and 28.9 Mi memory
2023-07-05 13:23:10.105387: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:10.574420: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5851 seconds and 3.6 Mi memory
2023-07-05 13:23:10.589761: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4946 seconds and 3.8 Mi memory
2023-07-05 13:23:10.638250: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:10.647364: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:10.670781: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.2128 seconds and 34.4 Mi memory
2023-07-05 13:23:10.671034: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:10.688773: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5826 seconds and 3.6 Mi memory
2023-07-05 13:23:10.731361: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:10.856395: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.6873 seconds and 47.2 Mi memory
2023-07-05 13:23:10.856658: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:10.874880: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:10.976064: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1279 seconds and 30.0 Mi memory
2023-07-05 13:23:10.976337: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:11.022578: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chrUn_GL000224v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:11.040059: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.7426 seconds and 36.7 Mi memory
2023-07-05 13:23:11.040330: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:11.103442: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.2733 seconds and 30.4 Mi memory
2023-07-05 13:23:11.103717: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:11.208695: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.108 seconds and 34.2 Mi memory
2023-07-05 13:23:11.209082: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:11.266310: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5946 seconds and 3.7 Mi memory
2023-07-05 13:23:11.321276: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:11.373813: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.2133 seconds and 63.3 Mi memory
2023-07-05 13:23:11.374186: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:11.414811: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5574 seconds and 3.8 Mi memory
2023-07-05 13:23:11.479220: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:11.570203: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4656 seconds and 3.7 Mi memory
2023-07-05 13:23:11.581921: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6047 seconds and 3.7 Mi memory
2023-07-05 13:23:11.612348: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:11.618938: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5777 seconds and 3.8 Mi memory
2023-07-05 13:23:11.660503: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4505 seconds and 3.7 Mi memory
2023-07-05 13:23:11.662719: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:11.703752: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:11.713656: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:11.840881: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.134 seconds and 37.7 Mi memory
2023-07-05 13:23:11.841147: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:11.980931: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6059 seconds and 3.7 Mi memory
2023-07-05 13:23:12.036148: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:12.258064: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chrY.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:12.268489: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4265 seconds and 3.6 Mi memory
2023-07-05 13:23:12.318278: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:13.517721: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1595 seconds and 64.8 Mi memory
2023-07-05 13:23:13.517985: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:13.959833: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.441 seconds and 3.8 Mi memory
2023-07-05 13:23:14.013218: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:15.327701: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.3736 seconds and 43.6 Mi memory
2023-07-05 13:23:15.327965: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:16.023193: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.5776 seconds and 30.7 Mi memory
2023-07-05 13:23:16.023573: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:16.398294: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.5054 seconds and 49.6 Mi memory
2023-07-05 13:23:16.398701: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:16.568167: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2395 seconds and 3.7 Mi memory
2023-07-05 13:23:16.671959: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270310v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:16.675402: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6509 seconds and 3.8 Mi memory
2023-07-05 13:23:16.834109: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:17.006021: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270310v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.333 seconds and 41.1 Mi memory
2023-07-05 13:23:17.006377: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270310v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:17.012102: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270310v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.005 seconds and 3.8 Mi memory
2023-07-05 13:23:17.031570: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr2_KI270716v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:17.075149: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6755 seconds and 3.7 Mi memory
2023-07-05 13:23:17.189050: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.55 seconds and 55.5 Mi memory
2023-07-05 13:23:17.189291: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:17.238414: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.5902 seconds and 35.4 Mi memory
2023-07-05 13:23:17.238715: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:17.243661: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.1232 seconds and 48.1 Mi memory
2023-07-05 13:23:17.243927: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:17.306641: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:17.340595: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr2_KI270716v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3084 seconds and 41.1 Mi memory
2023-07-05 13:23:17.340849: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr2_KI270716v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:17.347770: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr2_KI270716v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0063 seconds and 3.8 Mi memory
2023-07-05 13:23:17.368092: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270329v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:17.416469: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.6842 seconds and 34.8 Mi memory
2023-07-05 13:23:17.416739: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:17.670785: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270329v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3019 seconds and 41.1 Mi memory
2023-07-05 13:23:17.671036: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270329v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:17.677715: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270329v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.006 seconds and 3.7 Mi memory
2023-07-05 13:23:17.711010: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:17.726183: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.404 seconds and 39.6 Mi memory
2023-07-05 13:23:17.726439: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:17.904145: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6645 seconds and 3.8 Mi memory
2023-07-05 13:23:18.015463: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3038 seconds and 41.1 Mi memory
2023-07-05 13:23:18.015692: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:18.021742: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0054 seconds and 3.7 Mi memory
2023-07-05 13:23:18.059919: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270584v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:18.116151: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:18.151604: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9615 seconds and 3.7 Mi memory
2023-07-05 13:23:18.190906: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.5273 seconds and 28.1 Mi memory
2023-07-05 13:23:18.191162: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:18.275783: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.6626 seconds and 34.4 Mi memory
2023-07-05 13:23:18.276166: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:18.362256: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9448 seconds and 3.7 Mi memory
2023-07-05 13:23:18.364167: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270584v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3037 seconds and 41.1 Mi memory
2023-07-05 13:23:18.364427: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270584v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:18.370287: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270584v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0052 seconds and 3.7 Mi memory
2023-07-05 13:23:18.418620: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:18.419120: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.382 seconds and 46.2 Mi memory
2023-07-05 13:23:18.419380: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:18.429598: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270751v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:18.463516: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.749 seconds and 34.4 Mi memory
2023-07-05 13:23:18.463904: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:18.575526: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:18.610772: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8836 seconds and 3.8 Mi memory
2023-07-05 13:23:18.746674: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270751v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3162 seconds and 41.1 Mi memory
2023-07-05 13:23:18.747036: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270751v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:18.757699: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270751v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0099 seconds and 3.6 Mi memory
2023-07-05 13:23:18.772601: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chrUn_KI270467v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:18.784613: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chrUn_KI270467v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0112 seconds and 3.1 Mi memory
2023-07-05 13:23:18.784764: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chrUn_KI270467v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:18.788178: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr14_GL000225v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:18.790120: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chrUn_KI270467v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.005 seconds and 3.7 Mi memory
2023-07-05 13:23:18.814514: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:18.998777: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7217 seconds and 3.7 Mi memory
2023-07-05 13:23:19.008320: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8164 seconds and 3.7 Mi memory
2023-07-05 13:23:19.031483: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chrY.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:19.065343: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6451 seconds and 3.6 Mi memory
2023-07-05 13:23:19.104907: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr14_GL000225v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3161 seconds and 41.1 Mi memory
2023-07-05 13:23:19.105264: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr14_GL000225v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:19.112672: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr14_GL000225v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0067 seconds and 3.6 Mi memory
2023-07-05 13:23:19.148719: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.8296 seconds and 23.8 Mi memory
2023-07-05 13:23:19.148976: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:19.168161: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270748v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:19.358066: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:19.386548: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:19.418444: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:19.425450: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9607 seconds and 3.6 Mi memory
2023-07-05 13:23:19.436767: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.192 seconds and 3.8 Mi memory
2023-07-05 13:23:19.476467: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270748v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3076 seconds and 41.1 Mi memory
2023-07-05 13:23:19.476836: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270748v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:19.485027: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270748v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0075 seconds and 3.7 Mi memory
2023-07-05 13:23:19.494394: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270381v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:19.598648: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:19.686264: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:19.799123: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270381v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3042 seconds and 41.1 Mi memory
2023-07-05 13:23:19.799387: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270381v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:19.805877: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270381v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0058 seconds and 3.9 Mi memory
2023-07-05 13:23:19.817440: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.3374 seconds and 52.2 Mi memory
2023-07-05 13:23:19.817693: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:19.826349: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270741v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:20.060731: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.911 seconds and 3.8 Mi memory
2023-07-05 13:23:20.120915: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.4164 seconds and 51.4 Mi memory
2023-07-05 13:23:20.121183: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:20.136691: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270741v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3097 seconds and 41.1 Mi memory
2023-07-05 13:23:20.136942: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270741v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:20.142586: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270741v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0051 seconds and 3.7 Mi memory
2023-07-05 13:23:20.155855: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr9_KI270719v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:20.238570: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:20.472862: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr9_KI270719v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3164 seconds and 41.1 Mi memory
2023-07-05 13:23:20.473123: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr9_KI270719v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:20.478812: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr9_KI270719v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0051 seconds and 3.8 Mi memory
2023-07-05 13:23:20.507951: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr14_KI270725v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:20.824766: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr14_KI270725v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3162 seconds and 41.1 Mi memory
2023-07-05 13:23:20.825031: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr14_KI270725v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:20.831989: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr14_KI270725v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0063 seconds and 3.7 Mi memory
2023-07-05 13:23:20.877308: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_GL000216v2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:20.946590: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.9326 seconds and 110.0 Mi memory
2023-07-05 13:23:20.946850: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:21.024326: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9023 seconds and 3.7 Mi memory
2023-07-05 13:23:21.060082: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2415 seconds and 3.7 Mi memory
2023-07-05 13:23:21.189008: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_GL000216v2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3111 seconds and 41.1 Mi memory
2023-07-05 13:23:21.189269: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_GL000216v2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:21.194940: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_GL000216v2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0051 seconds and 3.7 Mi memory
2023-07-05 13:23:21.195464: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chrY.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:21.228409: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270420v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:21.257517: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:21.294663: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:21.532462: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270420v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3035 seconds and 41.1 Mi memory
2023-07-05 13:23:21.532727: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270420v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:21.539292: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270420v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0059 seconds and 3.7 Mi memory
2023-07-05 13:23:21.565214: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270419v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:21.869116: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270419v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3033 seconds and 41.1 Mi memory
2023-07-05 13:23:21.869378: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270419v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:21.875627: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270419v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0056 seconds and 3.7 Mi memory
2023-07-05 13:23:21.896271: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr22_KI270731v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:21.972363: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0247 seconds and 3.7 Mi memory
2023-07-05 13:23:22.179659: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:22.211390: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr22_KI270731v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3144 seconds and 41.3 Mi memory
2023-07-05 13:23:22.211756: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr22_KI270731v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:22.218461: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr22_KI270731v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.006 seconds and 3.7 Mi memory
2023-07-05 13:23:22.239116: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270315v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:22.434692: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.753 seconds and 110.7 Mi memory
2023-07-05 13:23:22.435066: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:22.545478: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270315v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3058 seconds and 41.1 Mi memory
2023-07-05 13:23:22.545845: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270315v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:22.551581: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270315v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.005 seconds and 3.7 Mi memory
2023-07-05 13:23:22.572350: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270519v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:22.680420: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.479 seconds and 46.0 Mi memory
2023-07-05 13:23:22.680814: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:22.708809: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.0776 seconds and 79.5 Mi memory
2023-07-05 13:23:22.709078: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:22.758710: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.1306 seconds and 127.2 Mi memory
2023-07-05 13:23:22.758916: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:22.907999: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270519v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3351 seconds and 41.1 Mi memory
2023-07-05 13:23:22.908274: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270519v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:22.915180: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270519v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0062 seconds and 3.7 Mi memory
2023-07-05 13:23:22.951672: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:23.095241: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chrY.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:23.267578: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.6679 seconds and 20.3 Mi memory
2023-07-05 13:23:23.267843: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:23.377195: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chrY.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:23.666445: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3978 seconds and 3.7 Mi memory
2023-07-05 13:23:23.719048: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:23.813031: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.2989 seconds and 57.3 Mi memory
2023-07-05 13:23:23.813302: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:24.336854: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:24.363950: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6541 seconds and 3.7 Mi memory
2023-07-05 13:23:24.455381: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7737 seconds and 3.7 Mi memory
2023-07-05 13:23:24.464701: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:24.512743: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7531 seconds and 3.8 Mi memory
2023-07-05 13:23:24.547141: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:24.546240: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:24.572807: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:24.631816: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:24.639665: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2036 seconds and 3.7 Mi memory
2023-07-05 13:23:24.676021: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:24.711382: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:24.714124: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.9834 seconds and 77.0 Mi memory
2023-07-05 13:23:24.714505: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:24.715565: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:24.721551: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:24.728613: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:24.740116: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:24.741190: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:24.774045: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:24.801136: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr1_KI270708v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:24.811202: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:24.828227: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:24.851936: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:24.873919: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:24.946489: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:24.989381: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:25.020419: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:25.262978: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.9716 seconds and 115.0 Mi memory
2023-07-05 13:23:25.263240: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:25.423283: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.0577 seconds and 73.8 Mi memory
2023-07-05 13:23:25.423548: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:25.551918: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.2221 seconds and 62.2 Mi memory
2023-07-05 13:23:25.552211: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:25.799869: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.0379 seconds and 50.6 Mi memory
2023-07-05 13:23:25.800131: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:26.008561: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.1574 seconds and 106.8 Mi memory
2023-07-05 13:23:26.008952: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:26.059192: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2452 seconds and 3.7 Mi memory
2023-07-05 13:23:26.209887: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:26.774586: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0592 seconds and 3.8 Mi memory
2023-07-05 13:23:26.911387: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:27.271795: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.0134 seconds and 35.7 Mi memory
2023-07-05 13:23:27.272203: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:27.279091: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8547 seconds and 3.7 Mi memory
2023-07-05 13:23:27.352183: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.0564 seconds and 53.0 Mi memory
2023-07-05 13:23:27.352453: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:27.432526: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:27.575711: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.3118 seconds and 3.8 Mi memory
2023-07-05 13:23:27.604093: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5942 seconds and 3.8 Mi memory
2023-07-05 13:23:27.724359: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:27.738240: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1852 seconds and 3.8 Mi memory
2023-07-05 13:23:27.759750: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:27.864327: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5912 seconds and 3.7 Mi memory
2023-07-05 13:23:27.887270: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:27.928191: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1272 seconds and 3.7 Mi memory
2023-07-05 13:23:27.958061: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6047 seconds and 3.7 Mi memory
2023-07-05 13:23:28.112530: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:28.180432: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.6317 seconds and 25.8 Mi memory
2023-07-05 13:23:28.180701: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:28.199846: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:28.292262: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.5698 seconds and 18.5 Mi memory
2023-07-05 13:23:28.292495: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:28.300082: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:28.527853: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.6745 seconds and 23.0 Mi memory
2023-07-05 13:23:28.528252: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:28.578167: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3966 seconds and 3.7 Mi memory
2023-07-05 13:23:28.599912: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.87 seconds and 13.1 Mi memory
2023-07-05 13:23:28.600310: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:28.636998: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:28.789180: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4959 seconds and 3.7 Mi memory
2023-07-05 13:23:28.857061: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:29.097318: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5681 seconds and 3.8 Mi memory
2023-07-05 13:23:29.110294: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5091 seconds and 3.7 Mi memory
2023-07-05 13:23:29.183522: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:29.194161: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:29.938652: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.7275 seconds and 24.8 Mi memory
2023-07-05 13:23:29.938918: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:30.350454: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4107 seconds and 3.8 Mi memory
2023-07-05 13:23:30.415600: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:30.483855: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.571 seconds and 30.0 Mi memory
2023-07-05 13:23:30.484112: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:30.870958: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.386 seconds and 3.8 Mi memory
2023-07-05 13:23:30.963409: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:31.080688: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.6471 seconds and 41.9 Mi memory
2023-07-05 13:23:31.081069: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:31.303804: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.3516 seconds and 43.5 Mi memory
2023-07-05 13:23:31.304062: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:31.345612: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.5847 seconds and 40.8 Mi memory
2023-07-05 13:23:31.345863: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:31.396025: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.6705 seconds and 52.9 Mi memory
2023-07-05 13:23:31.396295: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:31.547559: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4655 seconds and 3.7 Mi memory
2023-07-05 13:23:31.604081: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:31.659728: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.7713 seconds and 33.4 Mi memory
2023-07-05 13:23:31.659971: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:31.747087: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.6336 seconds and 32.1 Mi memory
2023-07-05 13:23:31.747345: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:31.789693: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.443 seconds and 3.7 Mi memory
2023-07-05 13:23:31.841089: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:31.952566: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5554 seconds and 3.8 Mi memory
2023-07-05 13:23:32.163766: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.4439 seconds and 41.7 Mi memory
2023-07-05 13:23:32.164030: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:32.194880: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.534 seconds and 3.7 Mi memory
2023-07-05 13:23:32.220569: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:32.293053: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:32.294254: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5461 seconds and 3.8 Mi memory
2023-07-05 13:23:32.307688: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0029 seconds and 3.7 Mi memory
2023-07-05 13:23:32.369238: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:32.380654: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270336v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:32.708673: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270336v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3271 seconds and 41.1 Mi memory
2023-07-05 13:23:32.708935: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270336v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:32.715402: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270336v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0058 seconds and 3.6 Mi memory
2023-07-05 13:23:32.737679: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270335v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:32.893865: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.0588 seconds and 73.2 Mi memory
2023-07-05 13:23:32.894123: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:33.040605: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270335v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3024 seconds and 41.1 Mi memory
2023-07-05 13:23:33.040863: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270335v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:33.047365: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270335v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0058 seconds and 3.7 Mi memory
2023-07-05 13:23:33.069182: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270754v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:33.372951: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270754v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3031 seconds and 41.1 Mi memory
2023-07-05 13:23:33.373205: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270754v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:33.379715: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270754v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0058 seconds and 3.8 Mi memory
2023-07-05 13:23:33.388121: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2232 seconds and 3.8 Mi memory
2023-07-05 13:23:33.410731: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270465v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:33.489291: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.1819 seconds and 100.3 Mi memory
2023-07-05 13:23:33.489543: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:33.701804: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:33.716483: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270465v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.305 seconds and 41.1 Mi memory
2023-07-05 13:23:33.716733: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270465v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:33.723280: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270465v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0059 seconds and 3.8 Mi memory
2023-07-05 13:23:33.744446: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270752v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:34.052863: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270752v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3078 seconds and 41.1 Mi memory
2023-07-05 13:23:34.053126: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270752v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:34.058870: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270752v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0051 seconds and 3.7 Mi memory
2023-07-05 13:23:34.079458: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270394v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:34.396608: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270394v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3166 seconds and 41.1 Mi memory
2023-07-05 13:23:34.396862: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270394v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:34.402352: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270394v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0048 seconds and 3.8 Mi memory
2023-07-05 13:23:34.414865: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.2978 seconds and 68.8 Mi memory
2023-07-05 13:23:34.415198: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:34.440887: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270379v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:34.478349: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.0585 seconds and 108.3 Mi memory
2023-07-05 13:23:34.478733: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:34.728922: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.1522 seconds and 123.8 Mi memory
2023-07-05 13:23:34.729302: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:34.759334: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270379v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3177 seconds and 41.1 Mi memory
2023-07-05 13:23:34.759702: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270379v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:34.765536: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270379v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0051 seconds and 3.6 Mi memory
2023-07-05 13:23:34.796046: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270304v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:34.865554: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.0505 seconds and 69.7 Mi memory
2023-07-05 13:23:34.865794: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:34.985093: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0901 seconds and 3.7 Mi memory
2023-07-05 13:23:35.110142: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270304v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3135 seconds and 41.1 Mi memory
2023-07-05 13:23:35.110387: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270304v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:35.116464: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270304v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0054 seconds and 3.7 Mi memory
2023-07-05 13:23:35.133564: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:35.142875: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270591v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:35.242154: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.8227 seconds and 82.3 Mi memory
2023-07-05 13:23:35.242419: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:35.330964: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8405 seconds and 3.8 Mi memory
2023-07-05 13:23:35.452944: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270591v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3095 seconds and 41.1 Mi memory
2023-07-05 13:23:35.453196: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270591v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:35.462051: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270591v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0082 seconds and 3.8 Mi memory
2023-07-05 13:23:35.470828: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrY_KI270740v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:35.487440: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:35.704117: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.3451 seconds and 42.5 Mi memory
2023-07-05 13:23:35.704391: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:35.711979: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.3244 seconds and 40.2 Mi memory
2023-07-05 13:23:35.712247: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:35.778809: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrY_KI270740v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3074 seconds and 41.1 Mi memory
2023-07-05 13:23:35.779175: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrY_KI270740v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:35.785174: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrY_KI270740v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0053 seconds and 3.8 Mi memory
2023-07-05 13:23:35.803114: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:36.102079: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.4148 seconds and 66.6 Mi memory
2023-07-05 13:23:36.102461: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:36.219447: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8035 seconds and 3.8 Mi memory
2023-07-05 13:23:36.255877: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7762 seconds and 3.8 Mi memory
2023-07-05 13:23:36.418673: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:36.431648: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:36.440837: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.2013 seconds and 65.2 Mi memory
2023-07-05 13:23:36.441094: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:36.629086: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.7711 seconds and 51.1 Mi memory
2023-07-05 13:23:36.629356: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:36.814007: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5708 seconds and 3.6 Mi memory
2023-07-05 13:23:36.825737: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0955 seconds and 3.7 Mi memory
2023-07-05 13:23:36.886095: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.2483 seconds and 76.9 Mi memory
2023-07-05 13:23:36.886349: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:36.953113: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:36.988943: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:37.097765: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2311 seconds and 3.7 Mi memory
2023-07-05 13:23:37.228956: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:37.381032: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6759 seconds and 3.7 Mi memory
2023-07-05 13:23:37.468976: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7559 seconds and 3.8 Mi memory
2023-07-05 13:23:37.524661: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:37.632036: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.4474 seconds and 64.3 Mi memory
2023-07-05 13:23:37.632306: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:37.640830: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:37.702630: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0726 seconds and 3.7 Mi memory
2023-07-05 13:23:37.767457: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6641 seconds and 3.9 Mi memory
2023-07-05 13:23:37.837006: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.6417 seconds and 58.1 Mi memory
2023-07-05 13:23:37.837262: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:37.845988: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9589 seconds and 3.7 Mi memory
2023-07-05 13:23:37.920836: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:37.978099: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:38.069764: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:38.070538: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6286 seconds and 3.8 Mi memory
2023-07-05 13:23:38.212972: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:38.286825: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.1061 seconds and 233.2 Mi memory
2023-07-05 13:23:38.287201: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:38.795170: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9572 seconds and 3.8 Mi memory
2023-07-05 13:23:38.889490: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:38.918415: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.7839 seconds and 31.2 Mi memory
2023-07-05 13:23:38.918658: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:38.943271: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3101 seconds and 3.8 Mi memory
2023-07-05 13:23:39.094805: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.6784 seconds and 51.9 Mi memory
2023-07-05 13:23:39.095200: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:39.144410: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:39.304251: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.34 seconds and 35.6 Mi memory
2023-07-05 13:23:39.304514: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:39.320597: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.8321 seconds and 31.8 Mi memory
2023-07-05 13:23:39.320974: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:39.448162: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5286 seconds and 3.8 Mi memory
2023-07-05 13:23:39.541323: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:39.784058: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4622 seconds and 3.7 Mi memory
2023-07-05 13:23:39.829331: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:39.980073: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.2771 seconds and 41.2 Mi memory
2023-07-05 13:23:39.980360: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:40.110559: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.6908 seconds and 35.7 Mi memory
2023-07-05 13:23:40.110811: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:40.147969: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8426 seconds and 3.8 Mi memory
2023-07-05 13:23:40.160930: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.556 seconds and 57.8 Mi memory
2023-07-05 13:23:40.161316: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:40.198185: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.7653 seconds and 41.3 Mi memory
2023-07-05 13:23:40.198573: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:40.285744: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.9845 seconds and 89.8 Mi memory
2023-07-05 13:23:40.286124: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:40.307102: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2109 seconds and 3.8 Mi memory
2023-07-05 13:23:40.347828: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:40.432919: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.591 seconds and 99.8 Mi memory
2023-07-05 13:23:40.433166: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:40.527213: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:40.549182: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2611 seconds and 3.7 Mi memory
2023-07-05 13:23:40.552251: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.3514 seconds and 53.1 Mi memory
2023-07-05 13:23:40.552635: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:40.555516: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.2615 seconds and 43.0 Mi memory
2023-07-05 13:23:40.555846: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:40.646345: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.6924 seconds and 38.5 Mi memory
2023-07-05 13:23:40.646604: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:40.666060: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.6763 seconds and 49.8 Mi memory
2023-07-05 13:23:40.666311: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:40.674494: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5628 seconds and 3.8 Mi memory
2023-07-05 13:23:40.686576: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:40.699820: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5003 seconds and 3.7 Mi memory
2023-07-05 13:23:40.736091: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:40.757280: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:40.848496: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8673 seconds and 3.8 Mi memory
2023-07-05 13:23:40.903115: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.6814 seconds and 99.3 Mi memory
2023-07-05 13:23:40.903374: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:40.984400: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.6143 seconds and 49.1 Mi memory
2023-07-05 13:23:40.984670: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:40.994683: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.7647 seconds and 23.8 Mi memory
2023-07-05 13:23:40.994939: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:41.033693: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:41.206000: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5586 seconds and 3.6 Mi memory
2023-07-05 13:23:41.267704: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:41.272625: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6054 seconds and 3.7 Mi memory
2023-07-05 13:23:41.310547: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.7849 seconds and 29.2 Mi memory
2023-07-05 13:23:41.310801: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:41.340462: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:41.411387: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.7697 seconds and 13.2 Mi memory
2023-07-05 13:23:41.411649: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:41.420857: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4251 seconds and 3.8 Mi memory
2023-07-05 13:23:41.445335: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2831 seconds and 3.7 Mi memory
2023-07-05 13:23:41.489887: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:41.634664: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.7127 seconds and 28.9 Mi memory
2023-07-05 13:23:41.634918: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:41.665377: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:41.739898: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3059 seconds and 3.7 Mi memory
2023-07-05 13:23:41.756909: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4452 seconds and 3.9 Mi memory
2023-07-05 13:23:41.808473: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2517 seconds and 3.8 Mi memory
2023-07-05 13:23:41.832914: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5459 seconds and 3.7 Mi memory
2023-07-05 13:23:41.855584: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:41.911941: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.6981 seconds and 27.2 Mi memory
2023-07-05 13:23:41.912213: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:41.919871: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9344 seconds and 3.7 Mi memory
2023-07-05 13:23:41.964802: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5523 seconds and 3.8 Mi memory
2023-07-05 13:23:41.988001: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4345 seconds and 3.7 Mi memory
2023-07-05 13:23:42.050126: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:42.082921: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:42.115412: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chrUn_KI270744v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:42.119430: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2153 seconds and 3.7 Mi memory
2023-07-05 13:23:42.130935: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chrUn_KI270744v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0149 seconds and 3.1 Mi memory
2023-07-05 13:23:42.131089: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chrUn_KI270744v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:42.133974: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:42.135858: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chrUn_KI270744v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0044 seconds and 3.8 Mi memory
2023-07-05 13:23:42.203125: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5674 seconds and 3.8 Mi memory
2023-07-05 13:23:42.261924: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chrUn_KI270744v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:42.270032: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:42.272823: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chrUn_KI270744v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0101 seconds and 3.1 Mi memory
2023-07-05 13:23:42.272971: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chrUn_KI270744v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:42.273662: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:42.278274: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chrUn_KI270744v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0049 seconds and 3.8 Mi memory
2023-07-05 13:23:42.327097: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:42.328333: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4153 seconds and 3.8 Mi memory
2023-07-05 13:23:42.338016: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:42.373594: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:42.378252: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:43.800389: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8212 seconds and 82.6 Mi memory
2023-07-05 13:23:43.800779: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:44.244952: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.5575 seconds and 60.4 Mi memory
2023-07-05 13:23:44.245229: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:44.444913: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.374 seconds and 93.9 Mi memory
2023-07-05 13:23:44.445178: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:44.605978: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8044 seconds and 3.7 Mi memory
2023-07-05 13:23:44.671651: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4257 seconds and 3.7 Mi memory
2023-07-05 13:23:44.784018: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:44.854833: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:45.073024: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.1826 seconds and 59.4 Mi memory
2023-07-05 13:23:45.073301: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:45.230659: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.0851 seconds and 69.1 Mi memory
2023-07-05 13:23:45.231039: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:45.331399: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8854 seconds and 3.8 Mi memory
2023-07-05 13:23:45.512302: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:45.913882: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8399 seconds and 3.7 Mi memory
2023-07-05 13:23:46.099708: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8678 seconds and 3.8 Mi memory
2023-07-05 13:23:46.116602: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:46.329729: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:46.384521: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8561 seconds and 52.7 Mi memory
2023-07-05 13:23:46.384798: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:46.385027: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.0363 seconds and 55.3 Mi memory
2023-07-05 13:23:46.385290: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:46.978648: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5925 seconds and 3.8 Mi memory
2023-07-05 13:23:47.181985: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7964 seconds and 3.8 Mi memory
2023-07-05 13:23:47.225811: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:47.414636: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:47.418958: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.7525 seconds and 52.3 Mi memory
2023-07-05 13:23:47.419220: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:47.852784: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.3106 seconds and 64.1 Mi memory
2023-07-05 13:23:47.853045: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:47.879276: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.7952 seconds and 87.5 Mi memory
2023-07-05 13:23:47.879533: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:48.040392: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.2367 seconds and 43.6 Mi memory
2023-07-05 13:23:48.040656: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:48.114365: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9792 seconds and 59.9 Mi memory
2023-07-05 13:23:48.114745: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:48.162253: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.425 seconds and 47.3 Mi memory
2023-07-05 13:23:48.162510: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:48.198503: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9278 seconds and 74.3 Mi memory
2023-07-05 13:23:48.198757: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:48.201711: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7817 seconds and 3.6 Mi memory
2023-07-05 13:23:48.233523: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.4033 seconds and 60.2 Mi memory
2023-07-05 13:23:48.233902: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:48.397834: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.0702 seconds and 90.8 Mi memory
2023-07-05 13:23:48.398103: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:48.529238: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:48.717794: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6022 seconds and 3.7 Mi memory
2023-07-05 13:23:48.735253: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.855 seconds and 3.8 Mi memory
2023-07-05 13:23:48.738328: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8845 seconds and 3.7 Mi memory
2023-07-05 13:23:49.009935: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:49.040979: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.2829 seconds and 112.2 Mi memory
2023-07-05 13:23:49.041229: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:49.047793: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:49.056458: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8569 seconds and 3.8 Mi memory
2023-07-05 13:23:49.058964: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:49.166053: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0027 seconds and 3.8 Mi memory
2023-07-05 13:23:49.186150: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:49.242030: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8431 seconds and 3.6 Mi memory
2023-07-05 13:23:49.369851: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:49.406187: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:49.435785: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2009 seconds and 3.7 Mi memory
2023-07-05 13:23:49.565457: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:49.812592: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.4713 seconds and 137.0 Mi memory
2023-07-05 13:23:49.812865: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:49.814320: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.773 seconds and 3.8 Mi memory
2023-07-05 13:23:49.938695: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270373v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:49.955806: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9138 seconds and 3.8 Mi memory
2023-07-05 13:23:50.019994: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.5292 seconds and 44.5 Mi memory
2023-07-05 13:23:50.020384: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:50.073860: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.8053 seconds and 43.9 Mi memory
2023-07-05 13:23:50.074110: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:50.152099: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.2957 seconds and 49.2 Mi memory
2023-07-05 13:23:50.152374: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:50.155192: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:50.271319: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270373v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3318 seconds and 41.1 Mi memory
2023-07-05 13:23:50.271578: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270373v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:50.278159: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270373v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0059 seconds and 3.7 Mi memory
2023-07-05 13:23:50.298084: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270507v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:50.322261: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chrY.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 63.1933 seconds and 18.1 Mi memory
2023-07-05 13:23:50.322537: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chrY.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:50.575742: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chrY.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2525 seconds and 3.8 Mi memory
2023-07-05 13:23:50.600562: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270507v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3018 seconds and 41.1 Mi memory
2023-07-05 13:23:50.600812: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270507v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:50.607406: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270507v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0059 seconds and 3.6 Mi memory
2023-07-05 13:23:50.610857: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.3363 seconds and 45.7 Mi memory
2023-07-05 13:23:50.611100: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:50.648553: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270583v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:50.698469: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:50.759674: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.946 seconds and 3.6 Mi memory
2023-07-05 13:23:50.854026: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.475 seconds and 49.1 Mi memory
2023-07-05 13:23:50.854253: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:50.870365: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.8192 seconds and 76.2 Mi memory
2023-07-05 13:23:50.870620: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:50.939367: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:50.956721: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270583v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3075 seconds and 41.1 Mi memory
2023-07-05 13:23:50.957094: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270583v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:50.962915: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270583v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0051 seconds and 3.6 Mi memory
2023-07-05 13:23:50.974613: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270411v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:51.020198: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.867 seconds and 3.7 Mi memory
2023-07-05 13:23:51.254300: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:51.281190: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270411v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.306 seconds and 41.1 Mi memory
2023-07-05 13:23:51.281387: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2602 seconds and 3.7 Mi memory
2023-07-05 13:23:51.281451: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270411v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:51.283314: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2084 seconds and 3.7 Mi memory
2023-07-05 13:23:51.288122: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270411v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.006 seconds and 3.8 Mi memory
2023-07-05 13:23:51.294170: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.955 seconds and 41.3 Mi memory
2023-07-05 13:23:51.294520: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:51.355164: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270303v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:51.531664: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.1571 seconds and 39.6 Mi memory
2023-07-05 13:23:51.531931: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:51.552162: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:51.561462: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:51.661467: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270303v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3057 seconds and 41.1 Mi memory
2023-07-05 13:23:51.661734: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270303v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:51.668555: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270303v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0061 seconds and 3.7 Mi memory
2023-07-05 13:23:51.675585: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270742v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:51.851282: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2394 seconds and 3.8 Mi memory
2023-07-05 13:23:51.958494: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:51.995564: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270742v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3194 seconds and 41.4 Mi memory
2023-07-05 13:23:51.995818: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270742v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:52.003239: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270742v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0067 seconds and 3.7 Mi memory
2023-07-05 13:23:52.023599: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270340v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:52.253624: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3822 seconds and 3.8 Mi memory
2023-07-05 13:23:52.283286: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4283 seconds and 3.8 Mi memory
2023-07-05 13:23:52.325725: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270340v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3016 seconds and 41.1 Mi memory
2023-07-05 13:23:52.325975: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270340v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:52.336646: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270340v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.01 seconds and 3.8 Mi memory
2023-07-05 13:23:52.394966: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrEBV.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:52.528583: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2332 seconds and 3.7 Mi memory
2023-07-05 13:23:52.652247: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:52.695183: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:52.712568: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrEBV.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3169 seconds and 41.4 Mi memory
2023-07-05 13:23:52.712941: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrEBV.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:52.719279: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrEBV.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0056 seconds and 3.7 Mi memory
2023-07-05 13:23:52.760414: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270539v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:52.789258: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2566 seconds and 3.7 Mi memory
2023-07-05 13:23:52.943930: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:53.062762: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270539v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3018 seconds and 41.1 Mi memory
2023-07-05 13:23:53.063018: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270539v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:53.069536: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270539v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0058 seconds and 3.7 Mi memory
2023-07-05 13:23:53.114414: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270518v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:53.127796: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:53.151189: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.4519 seconds and 29.9 Mi memory
2023-07-05 13:23:53.151419: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:53.213576: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.1789 seconds and 44.0 Mi memory
2023-07-05 13:23:53.213842: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:53.410345: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.6255 seconds and 145.3 Mi memory
2023-07-05 13:23:53.410612: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:53.419387: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270518v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3042 seconds and 41.1 Mi memory
2023-07-05 13:23:53.419766: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270518v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:53.425522: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270518v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.005 seconds and 3.7 Mi memory
2023-07-05 13:23:53.432667: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270745v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:53.534380: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3822 seconds and 3.8 Mi memory
2023-07-05 13:23:53.615057: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:53.739579: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270745v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3063 seconds and 41.1 Mi memory
2023-07-05 13:23:53.739954: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270745v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:53.745564: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270745v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0049 seconds and 3.7 Mi memory
2023-07-05 13:23:53.782503: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270316v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:54.085837: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270316v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3027 seconds and 41.1 Mi memory
2023-07-05 13:23:54.086207: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270316v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:54.091380: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270316v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0044 seconds and 3.8 Mi memory
2023-07-05 13:23:54.130481: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270337v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:54.382174: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chrY.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 66.5019 seconds and 9.9 Mi memory
2023-07-05 13:23:54.382429: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chrY.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:54.415365: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2007 seconds and 3.8 Mi memory
2023-07-05 13:23:54.433575: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270337v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3024 seconds and 41.1 Mi memory
2023-07-05 13:23:54.433941: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270337v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:54.439695: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270337v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.005 seconds and 3.8 Mi memory
2023-07-05 13:23:54.455743: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:54.681931: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chrY.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2987 seconds and 3.7 Mi memory
2023-07-05 13:23:54.729269: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chrY.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 66.7345 seconds and 9.9 Mi memory
2023-07-05 13:23:54.729525: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chrY.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:54.734371: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3229 seconds and 3.7 Mi memory
2023-07-05 13:23:54.836338: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:54.905488: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8565 seconds and 55.3 Mi memory
2023-07-05 13:23:54.905843: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:54.964643: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:54.969612: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chrY.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2394 seconds and 3.6 Mi memory
2023-07-05 13:23:55.013967: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:55.027572: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:55.339274: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.7728 seconds and 45.8 Mi memory
2023-07-05 13:23:55.339539: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:55.410494: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.0396 seconds and 33.7 Mi memory
2023-07-05 13:23:55.410878: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:55.565221: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6585 seconds and 3.8 Mi memory
2023-07-05 13:23:55.665342: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:55.983086: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6427 seconds and 3.8 Mi memory
2023-07-05 13:23:56.177253: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:56.199974: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.0438 seconds and 87.2 Mi memory
2023-07-05 13:23:56.200232: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:56.235200: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8234 seconds and 3.8 Mi memory
2023-07-05 13:23:56.374513: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:56.783028: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8429 seconds and 52.6 Mi memory
2023-07-05 13:23:56.783298: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:56.851093: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.9952 seconds and 101.1 Mi memory
2023-07-05 13:23:56.851472: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:57.017454: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8165 seconds and 3.7 Mi memory
2023-07-05 13:23:57.257051: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:57.318962: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.8056 seconds and 100.6 Mi memory
2023-07-05 13:23:57.319228: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:57.373622: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.1184 seconds and 31.1 Mi memory
2023-07-05 13:23:57.374001: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:57.436630: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8741 seconds and 82.9 Mi memory
2023-07-05 13:23:57.436895: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:57.458895: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6747 seconds and 3.7 Mi memory
2023-07-05 13:23:57.463330: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.91 seconds and 84.9 Mi memory
2023-07-05 13:23:57.463718: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:57.513447: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6762 seconds and 25.1 Mi memory
2023-07-05 13:23:57.513669: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:57.643008: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:57.817014: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8575 seconds and 84.9 Mi memory
2023-07-05 13:23:57.817396: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:57.876498: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3621 seconds and 3.7 Mi memory
2023-07-05 13:23:57.952549: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:57.984381: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.956 seconds and 21.5 Mi memory
2023-07-05 13:23:57.984619: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:57.991054: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6162 seconds and 3.8 Mi memory
2023-07-05 13:23:58.134747: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.697 seconds and 3.8 Mi memory
2023-07-05 13:23:58.238235: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.9075 seconds and 119.9 Mi memory
2023-07-05 13:23:58.238491: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:58.269290: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:58.292458: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.175 seconds and 55.2 Mi memory
2023-07-05 13:23:58.292693: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:58.294573: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8299 seconds and 3.8 Mi memory
2023-07-05 13:23:58.300274: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3149 seconds and 3.8 Mi memory
2023-07-05 13:23:58.463319: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:58.489562: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1696 seconds and 3.8 Mi memory
2023-07-05 13:23:58.491518: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8383 seconds and 52.7 Mi memory
2023-07-05 13:23:58.491785: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:58.514796: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:58.535395: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7171 seconds and 3.8 Mi memory
2023-07-05 13:23:58.637550: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:58.647089: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9506 seconds and 86.7 Mi memory
2023-07-05 13:23:58.647360: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:58.654940: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8025 seconds and 3.7 Mi memory
2023-07-05 13:23:58.661906: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:58.669962: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0071 seconds and 3.1 Mi memory
2023-07-05 13:23:58.670106: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:58.674570: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0041 seconds and 3.7 Mi memory
2023-07-05 13:23:59.017862: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chrUn_KI270751v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:59.020958: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:59.035054: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chrUn_KI270751v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0152 seconds and 3.1 Mi memory
2023-07-05 13:23:59.035209: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chrUn_KI270751v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:59.040167: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chrUn_KI270751v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0046 seconds and 3.8 Mi memory
2023-07-05 13:23:59.214507: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:59.245730: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5975 seconds and 3.7 Mi memory
2023-07-05 13:23:59.288826: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7963 seconds and 3.8 Mi memory
2023-07-05 13:23:59.289148: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:59.343909: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.1173 seconds and 43.1 Mi memory
2023-07-05 13:23:59.344159: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:59.402012: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:59.417742: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:59.474797: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2355 seconds and 3.8 Mi memory
2023-07-05 13:23:59.509081: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2156 seconds and 3.7 Mi memory
2023-07-05 13:23:59.617270: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:59.624660: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0066 seconds and 3.0 Mi memory
2023-07-05 13:23:59.624799: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:59.629120: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0039 seconds and 3.7 Mi memory
2023-07-05 13:23:59.813373: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.3977 seconds and 45.0 Mi memory
2023-07-05 13:23:59.813619: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:23:59.829489: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:23:59.851747: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:00.752795: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.2226 seconds and 50.9 Mi memory
2023-07-05 13:24:00.753057: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:00.973691: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6286 seconds and 3.8 Mi memory
2023-07-05 13:24:00.982239: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1678 seconds and 3.8 Mi memory
2023-07-05 13:24:01.103351: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.0434 seconds and 103.6 Mi memory
2023-07-05 13:24:01.103721: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:01.214189: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.203 seconds and 54.2 Mi memory
2023-07-05 13:24:01.214569: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:01.337546: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.9304 seconds and 107.0 Mi memory
2023-07-05 13:24:01.337877: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:01.436557: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.2496 seconds and 61.8 Mi memory
2023-07-05 13:24:01.436817: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:01.456685: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.4418 seconds and 98.1 Mi memory
2023-07-05 13:24:01.456927: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:01.541880: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:01.542676: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:02.337306: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5834 seconds and 3.7 Mi memory
2023-07-05 13:24:02.362466: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9048 seconds and 3.8 Mi memory
2023-07-05 13:24:02.485135: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:02.494378: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0084 seconds and 3.0 Mi memory
2023-07-05 13:24:02.494540: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:02.498834: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0039 seconds and 3.7 Mi memory
2023-07-05 13:24:02.517089: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:02.746188: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.2899 seconds and 44.9 Mi memory
2023-07-05 13:24:02.746451: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:02.802488: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6979 seconds and 3.8 Mi memory
2023-07-05 13:24:02.922106: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:02.966443: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7509 seconds and 3.6 Mi memory
2023-07-05 13:24:03.019776: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.681 seconds and 3.8 Mi memory
2023-07-05 13:24:03.057378: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:03.065896: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0076 seconds and 3.1 Mi memory
2023-07-05 13:24:03.066051: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:03.072917: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0063 seconds and 3.6 Mi memory
2023-07-05 13:24:03.161142: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7235 seconds and 3.7 Mi memory
2023-07-05 13:24:03.580999: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:03.690465: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:03.732313: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:03.791256: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.8257 seconds and 66.7 Mi memory
2023-07-05 13:24:03.791585: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:03.818334: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:03.934957: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1877 seconds and 3.7 Mi memory
2023-07-05 13:24:04.028845: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270384v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:04.351954: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270384v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3223 seconds and 41.1 Mi memory
2023-07-05 13:24:04.352230: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270384v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:04.358917: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270384v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.006 seconds and 3.7 Mi memory
2023-07-05 13:24:04.375351: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270333v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:04.676757: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270333v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3008 seconds and 41.1 Mi memory
2023-07-05 13:24:04.677015: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270333v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:04.678684: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8862 seconds and 3.7 Mi memory
2023-07-05 13:24:04.683709: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270333v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.006 seconds and 3.8 Mi memory
2023-07-05 13:24:04.735449: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr1_KI270713v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:04.930487: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:05.044135: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr1_KI270713v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.308 seconds and 41.1 Mi memory
2023-07-05 13:24:05.044404: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr1_KI270713v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:05.050962: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr1_KI270713v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0058 seconds and 3.8 Mi memory
2023-07-05 13:24:05.060732: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270385v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:05.365695: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270385v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3044 seconds and 41.1 Mi memory
2023-07-05 13:24:05.365952: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270385v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:05.371955: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270385v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0053 seconds and 3.8 Mi memory
2023-07-05 13:24:05.389764: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:06.356277: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.4112 seconds and 67.9 Mi memory
2023-07-05 13:24:06.356527: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:06.616205: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.4872 seconds and 59.9 Mi memory
2023-07-05 13:24:06.616491: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:07.664071: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.0482 seconds and 56.2 Mi memory
2023-07-05 13:24:07.664297: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:07.861470: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.1952 seconds and 34.9 Mi memory
2023-07-05 13:24:07.861852: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:08.025553: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.8102 seconds and 55.2 Mi memory
2023-07-05 13:24:08.025830: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:08.084736: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4675 seconds and 3.7 Mi memory
2023-07-05 13:24:08.103677: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.8129 seconds and 95.0 Mi memory
2023-07-05 13:24:08.103899: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:08.301633: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9443 seconds and 3.8 Mi memory
2023-07-05 13:24:08.353228: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.1745 seconds and 82.2 Mi memory
2023-07-05 13:24:08.353500: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:08.428887: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:08.539089: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.1637 seconds and 58.8 Mi memory
2023-07-05 13:24:08.539347: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:08.645006: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:08.713245: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.8828 seconds and 118.9 Mi memory
2023-07-05 13:24:08.713511: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:08.876069: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.023 seconds and 40.3 Mi memory
2023-07-05 13:24:08.876350: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:08.906760: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8801 seconds and 3.7 Mi memory
2023-07-05 13:24:09.151047: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:09.332384: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2277 seconds and 3.8 Mi memory
2023-07-05 13:24:09.371947: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.1139 seconds and 106.5 Mi memory
2023-07-05 13:24:09.372203: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:09.541649: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1873 seconds and 3.6 Mi memory
2023-07-05 13:24:09.557504: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6947 seconds and 3.8 Mi memory
2023-07-05 13:24:09.634554: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:09.667923: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.024 seconds and 101.6 Mi memory
2023-07-05 13:24:09.668202: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:09.694649: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:09.702286: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0069 seconds and 2.9 Mi memory
2023-07-05 13:24:09.702439: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:09.706696: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0038 seconds and 3.8 Mi memory
2023-07-05 13:24:09.737649: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0726 seconds and 3.7 Mi memory
2023-07-05 13:24:09.775744: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8985 seconds and 3.7 Mi memory
2023-07-05 13:24:09.784559: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:09.795044: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0096 seconds and 3.0 Mi memory
2023-07-05 13:24:09.795201: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:09.799752: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0042 seconds and 3.8 Mi memory
2023-07-05 13:24:09.851181: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.4212 seconds and 8.4 Mi memory
2023-07-05 13:24:09.851446: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:09.926100: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3859 seconds and 3.7 Mi memory
2023-07-05 13:24:10.002952: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2886 seconds and 3.8 Mi memory
2023-07-05 13:24:10.116091: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.264 seconds and 3.8 Mi memory
2023-07-05 13:24:10.130265: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:10.138735: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:10.146830: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0073 seconds and 3.1 Mi memory
2023-07-05 13:24:10.146978: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:10.151162: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0038 seconds and 3.7 Mi memory
2023-07-05 13:24:10.183373: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:10.188929: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:10.189555: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:10.430293: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:10.433547: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.1627 seconds and 62.0 Mi memory
2023-07-05 13:24:10.433933: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:10.462914: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.919 seconds and 48.2 Mi memory
2023-07-05 13:24:10.463166: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:10.499201: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:10.503135: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.8647 seconds and 106.8 Mi memory
2023-07-05 13:24:10.503392: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:10.628663: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.0858 seconds and 46.1 Mi memory
2023-07-05 13:24:10.628928: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:10.711361: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3384 seconds and 3.7 Mi memory
2023-07-05 13:24:10.748336: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.1022 seconds and 15.0 Mi memory
2023-07-05 13:24:10.748607: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:10.802150: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.2864 seconds and 170.7 Mi memory
2023-07-05 13:24:10.802492: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:10.913431: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:10.920550: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0064 seconds and 3.0 Mi memory
2023-07-05 13:24:10.920690: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:10.925220: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0041 seconds and 3.7 Mi memory
2023-07-05 13:24:11.023913: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.0017 seconds and 58.3 Mi memory
2023-07-05 13:24:11.024306: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:11.062761: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:11.083174: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3337 seconds and 3.8 Mi memory
2023-07-05 13:24:11.167866: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4988 seconds and 3.6 Mi memory
2023-07-05 13:24:11.220551: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:11.308794: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:11.319995: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:11.329768: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0089 seconds and 2.9 Mi memory
2023-07-05 13:24:11.329922: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:11.334382: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0041 seconds and 3.7 Mi memory
2023-07-05 13:24:11.419560: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chrUn_GL000224v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 80.1212 seconds and 3.0 Mi memory
2023-07-05 13:24:11.419812: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chrUn_GL000224v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:11.432321: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chrUn_GL000224v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0119 seconds and 3.7 Mi memory
2023-07-05 13:24:11.501110: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.0824 seconds and 61.7 Mi memory
2023-07-05 13:24:11.501500: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:11.585305: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.1824 seconds and 50.9 Mi memory
2023-07-05 13:24:11.585659: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:11.615445: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:11.735765: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2717 seconds and 3.8 Mi memory
2023-07-05 13:24:11.807111: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:11.878762: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2489 seconds and 3.7 Mi memory
2023-07-05 13:24:11.885370: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.962 seconds and 31.8 Mi memory
2023-07-05 13:24:11.885625: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:11.949336: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:12.161568: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7267 seconds and 3.8 Mi memory
2023-07-05 13:24:12.174506: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:12.190962: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.7268 seconds and 116.3 Mi memory
2023-07-05 13:24:12.191197: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:12.247399: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7432 seconds and 3.8 Mi memory
2023-07-05 13:24:12.359872: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.7779 seconds and 78.2 Mi memory
2023-07-05 13:24:12.360137: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:12.538712: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7354 seconds and 3.7 Mi memory
2023-07-05 13:24:12.670029: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.9784 seconds and 86.5 Mi memory
2023-07-05 13:24:12.670420: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:12.696302: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.9628 seconds and 56.3 Mi memory
2023-07-05 13:24:12.696680: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:12.714548: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.7611 seconds and 77.4 Mi memory
2023-07-05 13:24:12.714781: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:12.755206: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.73 seconds and 3.7 Mi memory
2023-07-05 13:24:12.755400: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:12.801298: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:12.808333: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0063 seconds and 3.0 Mi memory
2023-07-05 13:24:12.808491: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:12.813210: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0043 seconds and 3.6 Mi memory
2023-07-05 13:24:12.880438: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:12.900241: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.081 seconds and 58.6 Mi memory
2023-07-05 13:24:12.900502: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:13.095275: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2089 seconds and 3.7 Mi memory
2023-07-05 13:24:13.202433: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7 seconds and 3.8 Mi memory
2023-07-05 13:24:13.252925: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:13.255171: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8942 seconds and 3.7 Mi memory
2023-07-05 13:24:13.282201: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6954 seconds and 3.7 Mi memory
2023-07-05 13:24:13.490417: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:13.521725: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:13.532006: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0092 seconds and 3.1 Mi memory
2023-07-05 13:24:13.532163: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:13.536567: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.004 seconds and 3.6 Mi memory
2023-07-05 13:24:13.561259: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:13.570769: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0083 seconds and 3.0 Mi memory
2023-07-05 13:24:13.570915: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:13.575305: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.004 seconds and 3.8 Mi memory
2023-07-05 13:24:13.585707: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9144 seconds and 3.7 Mi memory
2023-07-05 13:24:13.591915: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8943 seconds and 3.8 Mi memory
2023-07-05 13:24:13.639908: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:13.756962: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:13.796392: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8951 seconds and 3.7 Mi memory
2023-07-05 13:24:13.957699: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:14.001193: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:14.008031: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:14.050367: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:14.090891: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:14.281133: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0892 seconds and 3.8 Mi memory
2023-07-05 13:24:14.514942: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.9967 seconds and 175.2 Mi memory
2023-07-05 13:24:14.515209: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:14.571868: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8563 seconds and 3.8 Mi memory
2023-07-05 13:24:15.191954: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.384 seconds and 32.5 Mi memory
2023-07-05 13:24:15.192173: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:15.285459: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:15.538102: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3452 seconds and 3.7 Mi memory
2023-07-05 13:24:15.610240: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chrY.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 83.3737 seconds and 15.2 Mi memory
2023-07-05 13:24:15.610495: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chrY.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:15.626981: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:15.710305: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1942 seconds and 3.8 Mi memory
2023-07-05 13:24:15.763787: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:15.834651: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:15.841030: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0057 seconds and 3.0 Mi memory
2023-07-05 13:24:15.841180: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:15.845132: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0036 seconds and 3.7 Mi memory
2023-07-05 13:24:15.925566: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chrY.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3144 seconds and 3.8 Mi memory
2023-07-05 13:24:15.952512: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr1_KI270707v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 82.4258 seconds and 3.2 Mi memory
2023-07-05 13:24:15.952872: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr1_KI270707v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:15.959440: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr1_KI270707v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0059 seconds and 3.7 Mi memory
2023-07-05 13:24:16.010589: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6203 seconds and 43.4 Mi memory
2023-07-05 13:24:16.010845: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:16.052854: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:16.164593: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chrY.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:16.176294: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:17.580456: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5689 seconds and 3.7 Mi memory
2023-07-05 13:24:17.683149: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:17.727572: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chrY.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.5622 seconds and 10.1 Mi memory
2023-07-05 13:24:17.727795: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chrY.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:17.902427: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.8388 seconds and 46.2 Mi memory
2023-07-05 13:24:17.902663: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:17.976565: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chrY.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.248 seconds and 3.8 Mi memory
2023-07-05 13:24:18.046945: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:18.311775: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.3802 seconds and 42.1 Mi memory
2023-07-05 13:24:18.312022: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:18.657945: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7545 seconds and 3.8 Mi memory
2023-07-05 13:24:18.749816: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6962 seconds and 33.5 Mi memory
2023-07-05 13:24:18.750045: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:18.761703: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:18.830185: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0677 seconds and 3.1 Mi memory
2023-07-05 13:24:18.830357: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:18.858104: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0273 seconds and 3.7 Mi memory
2023-07-05 13:24:18.882443: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:19.058361: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.9273 seconds and 38.5 Mi memory
2023-07-05 13:24:19.058637: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:19.175004: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4241 seconds and 3.7 Mi memory
2023-07-05 13:24:19.177613: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.9933 seconds and 41.7 Mi memory
2023-07-05 13:24:19.177878: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:19.247703: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:19.282528: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.0928 seconds and 51.7 Mi memory
2023-07-05 13:24:19.282798: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:19.432335: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.932 seconds and 46.3 Mi memory
2023-07-05 13:24:19.432605: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:19.433784: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 86.5076 seconds and 28.9 Mi memory
2023-07-05 13:24:19.434038: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:19.798168: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3634 seconds and 3.8 Mi memory
2023-07-05 13:24:19.867498: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:19.914055: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chrY.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 84.9487 seconds and 13.9 Mi memory
2023-07-05 13:24:19.914299: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chrY.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:20.025322: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9659 seconds and 3.8 Mi memory
2023-07-05 13:24:20.080635: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.8594 seconds and 54.0 Mi memory
2023-07-05 13:24:20.080899: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:20.086156: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7733 seconds and 3.8 Mi memory
2023-07-05 13:24:20.088648: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.91 seconds and 3.7 Mi memory
2023-07-05 13:24:20.102615: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 87.166 seconds and 32.7 Mi memory
2023-07-05 13:24:20.102870: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:20.119248: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chrY.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2042 seconds and 3.7 Mi memory
2023-07-05 13:24:20.183037: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:20.210467: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.9007 seconds and 56.8 Mi memory
2023-07-05 13:24:20.210839: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:20.270719: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9871 seconds and 3.8 Mi memory
2023-07-05 13:24:20.353933: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.7377 seconds and 89.5 Mi memory
2023-07-05 13:24:20.354202: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:20.363144: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2595 seconds and 3.8 Mi memory
2023-07-05 13:24:20.374791: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 87.2434 seconds and 25.0 Mi memory
2023-07-05 13:24:20.375068: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:20.497608: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0641 seconds and 3.8 Mi memory
2023-07-05 13:24:20.524655: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:20.541134: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:20.541790: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chrEBV.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:20.544858: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:20.547606: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:20.583094: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.8986 seconds and 51.4 Mi memory
2023-07-05 13:24:20.583347: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:20.627894: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 87.5756 seconds and 38.2 Mi memory
2023-07-05 13:24:20.628155: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:20.650491: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6027 seconds and 33.6 Mi memory
2023-07-05 13:24:20.650720: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:20.747844: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:20.781806: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.406 seconds and 3.8 Mi memory
2023-07-05 13:24:20.860932: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:20.919013: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 87.8671 seconds and 34.0 Mi memory
2023-07-05 13:24:20.919299: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:20.944768: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chrEBV.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.4017 seconds and 3.0 Mi memory
2023-07-05 13:24:20.945145: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chrEBV.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:20.973099: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 87.1851 seconds and 33.4 Mi memory
2023-07-05 13:24:20.973363: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:20.996273: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chrEBV.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0504 seconds and 3.7 Mi memory
2023-07-05 13:24:21.023655: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3948 seconds and 3.8 Mi memory
2023-07-05 13:24:21.031122: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4469 seconds and 3.8 Mi memory
2023-07-05 13:24:21.050079: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3985 seconds and 3.7 Mi memory
2023-07-05 13:24:21.088056: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:21.107675: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:21.115407: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9037 seconds and 3.8 Mi memory
2023-07-05 13:24:21.137465: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 88.2111 seconds and 33.8 Mi memory
2023-07-05 13:24:21.137726: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:21.158063: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8718 seconds and 24.2 Mi memory
2023-07-05 13:24:21.158290: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:21.185027: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:21.210891: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 88.285 seconds and 28.2 Mi memory
2023-07-05 13:24:21.211173: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:21.217136: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:21.333731: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.252 seconds and 3.7 Mi memory
2023-07-05 13:24:21.336385: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 88.0121 seconds and 38.2 Mi memory
2023-07-05 13:24:21.336670: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:21.337893: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3638 seconds and 3.8 Mi memory
2023-07-05 13:24:21.343403: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4233 seconds and 3.7 Mi memory
2023-07-05 13:24:21.430409: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:21.444491: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.306 seconds and 3.8 Mi memory
2023-07-05 13:24:21.454046: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:21.501773: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:21.515180: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.748 seconds and 44.9 Mi memory
2023-07-05 13:24:21.515414: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:21.576526: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:21.580372: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:21.617510: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2625 seconds and 3.8 Mi memory
2023-07-05 13:24:21.641101: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4291 seconds and 3.7 Mi memory
2023-07-05 13:24:21.663784: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.9068 seconds and 48.1 Mi memory
2023-07-05 13:24:21.664196: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:21.731191: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:21.737012: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5779 seconds and 3.8 Mi memory
2023-07-05 13:24:21.767994: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4305 seconds and 3.7 Mi memory
2023-07-05 13:24:21.875745: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:21.938050: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 88.2053 seconds and 17.6 Mi memory
2023-07-05 13:24:21.938310: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:21.965441: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:21.982631: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:21.991692: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 87.729 seconds and 37.5 Mi memory
2023-07-05 13:24:21.991945: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:22.040734: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.1591 seconds and 88.5 Mi memory
2023-07-05 13:24:22.040999: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:22.073331: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chrY.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 84.6783 seconds and 17.1 Mi memory
2023-07-05 13:24:22.073585: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chrY.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:22.097134: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.1306 seconds and 2.9 Mi memory
2023-07-05 13:24:22.097351: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:22.115070: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0172 seconds and 3.7 Mi memory
2023-07-05 13:24:22.120768: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.0321 seconds and 11.3 Mi memory
2023-07-05 13:24:22.121031: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:22.121536: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.8675 seconds and 98.3 Mi memory
2023-07-05 13:24:22.121807: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:22.138569: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6224 seconds and 3.7 Mi memory
2023-07-05 13:24:22.149709: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:22.243497: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chrY.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.1692 seconds and 3.8 Mi memory
2023-07-05 13:24:22.269810: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:22.320209: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.1983 seconds and 3.6 Mi memory
2023-07-05 13:24:22.321415: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:22.328058: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3354 seconds and 3.7 Mi memory
2023-07-05 13:24:22.344336: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4053 seconds and 3.9 Mi memory
2023-07-05 13:24:22.361453: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.091 seconds and 3.1 Mi memory
2023-07-05 13:24:22.361632: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:22.382650: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0205 seconds and 3.6 Mi memory
2023-07-05 13:24:22.394080: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.9024 seconds and 79.3 Mi memory
2023-07-05 13:24:22.394338: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:22.402520: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 88.1049 seconds and 26.9 Mi memory
2023-07-05 13:24:22.402776: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:22.418447: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:22.435984: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:22.446345: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:22.461771: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:22.759344: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.6073 seconds and 106.3 Mi memory
2023-07-05 13:24:22.759732: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:22.780307: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3769 seconds and 3.7 Mi memory
2023-07-05 13:24:22.784432: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.1489 seconds and 104.3 Mi memory
2023-07-05 13:24:22.784758: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:22.833762: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:22.892130: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.8407 seconds and 32.8 Mi memory
2023-07-05 13:24:22.892419: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:22.942024: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2769 seconds and 3.8 Mi memory
2023-07-05 13:24:23.034416: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9118 seconds and 3.7 Mi memory
2023-07-05 13:24:23.076942: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.0679 seconds and 46.1 Mi memory
2023-07-05 13:24:23.077216: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:23.114912: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0731 seconds and 3.8 Mi memory
2023-07-05 13:24:23.205561: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 88.6839 seconds and 32.1 Mi memory
2023-07-05 13:24:23.205809: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:23.245741: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:23.335596: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.1518 seconds and 34.6 Mi memory
2023-07-05 13:24:23.335823: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:23.416596: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:23.457516: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:23.456402: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 89.1604 seconds and 36.5 Mi memory
2023-07-05 13:24:23.456680: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:23.481075: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0859 seconds and 3.7 Mi memory
2023-07-05 13:24:23.569961: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3634 seconds and 3.7 Mi memory
2023-07-05 13:24:23.635958: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.4453 seconds and 58.9 Mi memory
2023-07-05 13:24:23.636235: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:23.669021: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3324 seconds and 3.7 Mi memory
2023-07-05 13:24:23.673493: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2422 seconds and 90.4 Mi memory
2023-07-05 13:24:23.673751: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:23.686655: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:23.786786: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3294 seconds and 3.7 Mi memory
2023-07-05 13:24:23.808202: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:23.862091: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:23.893587: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:24.008422: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 87.5121 seconds and 32.6 Mi memory
2023-07-05 13:24:24.008843: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:24.048077: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1548 seconds and 3.7 Mi memory
2023-07-05 13:24:24.156954: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.079 seconds and 3.7 Mi memory
2023-07-05 13:24:24.282633: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:24.328745: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3189 seconds and 3.8 Mi memory
2023-07-05 13:24:24.329385: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 86.6216 seconds and 25.1 Mi memory
2023-07-05 13:24:24.329631: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:24.436481: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:24.446422: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:24.627436: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2972 seconds and 3.8 Mi memory
2023-07-05 13:24:24.670131: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8845 seconds and 3.7 Mi memory
2023-07-05 13:24:24.714035: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:24.718611: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9579 seconds and 3.8 Mi memory
2023-07-05 13:24:24.948030: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.7708 seconds and 130.3 Mi memory
2023-07-05 13:24:24.948300: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:24.977123: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3401 seconds and 3.8 Mi memory
2023-07-05 13:24:25.013887: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6918 seconds and 37.4 Mi memory
2023-07-05 13:24:25.014116: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:25.043743: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3692 seconds and 3.8 Mi memory
2023-07-05 13:24:25.048295: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 87.776 seconds and 32.5 Mi memory
2023-07-05 13:24:25.048549: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:25.123868: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:25.126249: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:25.288780: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.1615 seconds and 4.8 Mi memory
2023-07-05 13:24:25.289162: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:25.335460: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3206 seconds and 3.7 Mi memory
2023-07-05 13:24:25.338484: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0485 seconds and 3.8 Mi memory
2023-07-05 13:24:25.350498: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.1748 seconds and 57.9 Mi memory
2023-07-05 13:24:25.350741: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:25.373703: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:25.388697: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3393 seconds and 3.8 Mi memory
2023-07-05 13:24:25.435196: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.4843 seconds and 69.6 Mi memory
2023-07-05 13:24:25.435446: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:25.450892: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:25.469506: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:25.564545: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:25.582159: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:25.909600: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 88.7093 seconds and 31.8 Mi memory
2023-07-05 13:24:25.909853: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:26.158982: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2484 seconds and 3.8 Mi memory
2023-07-05 13:24:26.162932: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.7878 seconds and 7.3 Mi memory
2023-07-05 13:24:26.163199: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:26.186782: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2376 seconds and 3.8 Mi memory
2023-07-05 13:24:26.220579: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:26.305305: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:26.305930: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.142 seconds and 3.7 Mi memory
2023-07-05 13:24:26.341932: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:26.604389: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.4793 seconds and 19.3 Mi memory
2023-07-05 13:24:26.604656: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:26.635435: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 87.6958 seconds and 27.4 Mi memory
2023-07-05 13:24:26.635693: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:26.707190: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 87.7244 seconds and 34.8 Mi memory
2023-07-05 13:24:26.707445: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:26.738853: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3027 seconds and 3.7 Mi memory
2023-07-05 13:24:26.759625: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.1763 seconds and 10.6 Mi memory
2023-07-05 13:24:26.759890: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:26.877792: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2724 seconds and 3.7 Mi memory
2023-07-05 13:24:26.910977: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.153 seconds and 89.3 Mi memory
2023-07-05 13:24:26.911227: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:26.994878: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:27.018248: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.31 seconds and 3.7 Mi memory
2023-07-05 13:24:27.030627: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9221 seconds and 60.5 Mi memory
2023-07-05 13:24:27.030871: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:27.030808: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.3897 seconds and 51.9 Mi memory
2023-07-05 13:24:27.031062: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:27.054844: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2942 seconds and 3.8 Mi memory
2023-07-05 13:24:27.077074: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4406 seconds and 3.8 Mi memory
2023-07-05 13:24:27.165457: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:27.177351: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.175 seconds and 92.2 Mi memory
2023-07-05 13:24:27.177687: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:27.192966: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chrY.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 83.4044 seconds and 13.2 Mi memory
2023-07-05 13:24:27.193231: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chrY.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:27.199713: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:27.206497: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2478 seconds and 57.0 Mi memory
2023-07-05 13:24:27.206898: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:27.209255: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:27.214608: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:27.241180: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8897 seconds and 3.7 Mi memory
2023-07-05 13:24:27.369283: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chrY.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.1753 seconds and 3.8 Mi memory
2023-07-05 13:24:27.484009: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:27.561564: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.4698 seconds and 87.2 Mi memory
2023-07-05 13:24:27.561830: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:27.614698: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:27.981042: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9495 seconds and 3.7 Mi memory
2023-07-05 13:24:28.038771: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr1_KI270709v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:28.318437: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.1082 seconds and 15.5 Mi memory
2023-07-05 13:24:28.318820: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:28.356458: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr1_KI270709v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3167 seconds and 41.1 Mi memory
2023-07-05 13:24:28.356713: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr1_KI270709v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:28.363258: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr1_KI270709v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0058 seconds and 3.8 Mi memory
2023-07-05 13:24:28.379346: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:28.473903: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5618 seconds and 3.8 Mi memory
2023-07-05 13:24:28.538971: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2194 seconds and 3.8 Mi memory
2023-07-05 13:24:28.550471: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3427 seconds and 3.7 Mi memory
2023-07-05 13:24:28.556427: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5245 seconds and 3.8 Mi memory
2023-07-05 13:24:28.717402: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:28.899715: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3371 seconds and 3.7 Mi memory
2023-07-05 13:24:28.911630: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:28.940334: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chrY.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 80.7138 seconds and 11.4 Mi memory
2023-07-05 13:24:28.940633: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chrY.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:28.962832: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:28.978369: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.3506 seconds and 104.2 Mi memory
2023-07-05 13:24:28.978604: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:28.982485: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:29.016278: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.4005 seconds and 7.6 Mi memory
2023-07-05 13:24:29.016654: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:29.069858: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8911 seconds and 3.6 Mi memory
2023-07-05 13:24:29.213810: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chrY.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2724 seconds and 3.8 Mi memory
2023-07-05 13:24:29.229393: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:29.302700: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2852 seconds and 3.7 Mi memory
2023-07-05 13:24:29.326699: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:29.415735: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:29.452509: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:29.724601: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chrY.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 80.928 seconds and 9.6 Mi memory
2023-07-05 13:24:29.724897: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chrY.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:30.037514: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.5526 seconds and 32.5 Mi memory
2023-07-05 13:24:30.037748: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:30.105238: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chrY.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3558 seconds and 3.8 Mi memory
2023-07-05 13:24:30.163738: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:30.243055: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.3302 seconds and 8.9 Mi memory
2023-07-05 13:24:30.243313: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:30.253168: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.7995 seconds and 8.9 Mi memory
2023-07-05 13:24:30.253425: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:30.287659: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.3043 seconds and 14.7 Mi memory
2023-07-05 13:24:30.287862: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:30.392307: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3538 seconds and 3.8 Mi memory
2023-07-05 13:24:30.405669: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.1514 seconds and 3.7 Mi memory
2023-07-05 13:24:30.428741: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.1846 seconds and 3.8 Mi memory
2023-07-05 13:24:30.502905: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:30.520917: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2324 seconds and 3.7 Mi memory
2023-07-05 13:24:30.538297: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:30.546393: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:30.580451: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:30.602091: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6226 seconds and 3.8 Mi memory
2023-07-05 13:24:30.772486: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 83.8647 seconds and 17.3 Mi memory
2023-07-05 13:24:30.772806: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:30.792943: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.829 seconds and 10.1 Mi memory
2023-07-05 13:24:30.793211: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:30.802890: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr14_GL000194v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:30.814994: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr14_GL000194v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0112 seconds and 3.1 Mi memory
2023-07-05 13:24:30.815129: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr14_GL000194v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:30.820074: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr14_GL000194v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0045 seconds and 3.7 Mi memory
2023-07-05 13:24:30.877107: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chrUn_GL000214v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:30.883168: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chrUn_GL000214v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0056 seconds and 3.1 Mi memory
2023-07-05 13:24:30.883294: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chrUn_GL000214v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:30.888273: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chrUn_GL000214v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0046 seconds and 3.7 Mi memory
2023-07-05 13:24:30.911275: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chrUn_KI270746v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:30.917651: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chrUn_KI270746v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0059 seconds and 3.1 Mi memory
2023-07-05 13:24:30.917769: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chrUn_KI270746v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:30.922128: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chrUn_KI270746v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.004 seconds and 3.6 Mi memory
2023-07-05 13:24:30.971250: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chrUn_KI270743v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:30.986438: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chrUn_KI270743v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0147 seconds and 3.1 Mi memory
2023-07-05 13:24:30.986569: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chrUn_KI270743v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:30.993807: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chrUn_KI270743v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0068 seconds and 3.8 Mi memory
2023-07-05 13:24:31.025954: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 84.1708 seconds and 35.4 Mi memory
2023-07-05 13:24:31.026256: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:31.032944: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:31.131517: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3375 seconds and 3.6 Mi memory
2023-07-05 13:24:31.172563: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:31.270596: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.0401 seconds and 21.7 Mi memory
2023-07-05 13:24:31.270863: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:31.271446: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.8521 seconds and 46.4 Mi memory
2023-07-05 13:24:31.271704: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:31.369484: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5958 seconds and 3.8 Mi memory
2023-07-05 13:24:31.441521: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:31.465218: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4381 seconds and 3.8 Mi memory
2023-07-05 13:24:31.512494: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:31.647434: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3757 seconds and 3.6 Mi memory
2023-07-05 13:24:31.666717: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 84.3656 seconds and 25.4 Mi memory
2023-07-05 13:24:31.667014: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:31.690939: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:32.012739: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3449 seconds and 3.8 Mi memory
2023-07-05 13:24:32.089305: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:32.099120: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.5568 seconds and 53.7 Mi memory
2023-07-05 13:24:32.099394: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:32.258972: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.9314 seconds and 30.8 Mi memory
2023-07-05 13:24:32.259240: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:32.475591: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.203 seconds and 3.8 Mi memory
2023-07-05 13:24:32.620302: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:32.633258: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3732 seconds and 3.8 Mi memory
2023-07-05 13:24:32.652021: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chrUn_GL000224v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 81.6276 seconds and 3.0 Mi memory
2023-07-05 13:24:32.652313: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chrUn_GL000224v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:32.660890: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chrUn_GL000224v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0074 seconds and 3.7 Mi memory
2023-07-05 13:24:32.699759: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:32.717121: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.5526 seconds and 33.0 Mi memory
2023-07-05 13:24:32.717331: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:32.812165: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:32.962216: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.3847 seconds and 65.8 Mi memory
2023-07-05 13:24:32.962474: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:33.109654: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3917 seconds and 3.8 Mi memory
2023-07-05 13:24:33.186417: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:33.238615: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1383 seconds and 3.8 Mi memory
2023-07-05 13:24:33.275993: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 85.2036 seconds and 19.6 Mi memory
2023-07-05 13:24:33.276291: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:33.349543: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:33.573310: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 83.8051 seconds and 33.9 Mi memory
2023-07-05 13:24:33.573616: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:33.614564: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3374 seconds and 3.6 Mi memory
2023-07-05 13:24:33.699747: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:33.767215: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2186 seconds and 69.2 Mi memory
2023-07-05 13:24:33.767478: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:33.771758: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2257 seconds and 67.1 Mi memory
2023-07-05 13:24:33.772019: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:33.817354: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 86.6873 seconds and 33.3 Mi memory
2023-07-05 13:24:33.817610: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:33.958576: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3841 seconds and 3.6 Mi memory
2023-07-05 13:24:33.978279: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chrY.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 81.7165 seconds and 3.2 Mi memory
2023-07-05 13:24:33.978579: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chrY.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:33.995670: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chrY.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0163 seconds and 3.7 Mi memory
2023-07-05 13:24:34.001583: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:34.052893: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 86.9568 seconds and 27.2 Mi memory
2023-07-05 13:24:34.053186: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:34.061986: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:34.070045: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.321 seconds and 63.2 Mi memory
2023-07-05 13:24:34.070307: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:34.082983: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1197 seconds and 3.7 Mi memory
2023-07-05 13:24:34.081408: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.2132 seconds and 90.2 Mi memory
2023-07-05 13:24:34.081644: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:34.128076: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3095 seconds and 3.7 Mi memory
2023-07-05 13:24:34.165217: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.9472 seconds and 67.3 Mi memory
2023-07-05 13:24:34.165447: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:34.198338: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:34.203737: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:34.340668: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.8381 seconds and 106.1 Mi memory
2023-07-05 13:24:34.340902: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:34.423571: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3694 seconds and 3.7 Mi memory
2023-07-05 13:24:34.462323: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:34.477688: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.0258 seconds and 43.6 Mi memory
2023-07-05 13:24:34.478058: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:34.551468: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.3029 seconds and 128.9 Mi memory
2023-07-05 13:24:34.551709: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:34.708843: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2773 seconds and 99.6 Mi memory
2023-07-05 13:24:34.709224: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:34.791771: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.3369 seconds and 59.1 Mi memory
2023-07-05 13:24:34.792002: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:35.294974: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.7695 seconds and 48.7 Mi memory
2023-07-05 13:24:35.295305: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:35.386995: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 84.5095 seconds and 32.4 Mi memory
2023-07-05 13:24:35.387298: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:35.473241: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.1305 seconds and 34.9 Mi memory
2023-07-05 13:24:35.473623: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:35.502878: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.7709 seconds and 48.8 Mi memory
2023-07-05 13:24:35.503151: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:35.504298: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6911 seconds and 32.2 Mi memory
2023-07-05 13:24:35.504578: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:35.509677: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7413 seconds and 3.9 Mi memory
2023-07-05 13:24:35.515863: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4334 seconds and 3.7 Mi memory
2023-07-05 13:24:35.551056: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.6743 seconds and 90.0 Mi memory
2023-07-05 13:24:35.551441: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:35.575866: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0968 seconds and 3.8 Mi memory
2023-07-05 13:24:35.704968: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9322 seconds and 3.8 Mi memory
2023-07-05 13:24:35.744545: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3563 seconds and 3.7 Mi memory
2023-07-05 13:24:35.763372: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.9016 seconds and 95.7 Mi memory
2023-07-05 13:24:35.763704: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:35.836201: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chrY.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 76.6127 seconds and 9.6 Mi memory
2023-07-05 13:24:35.836501: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chrY.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:35.878097: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3727 seconds and 3.8 Mi memory
2023-07-05 13:24:35.881254: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:35.935934: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:35.956883: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 87.047 seconds and 34.9 Mi memory
2023-07-05 13:24:35.957156: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:35.974411: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8083 seconds and 3.8 Mi memory
2023-07-05 13:24:35.987732: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.8019 seconds and 96.4 Mi memory
2023-07-05 13:24:35.987968: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:36.028147: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.0323 seconds and 60.9 Mi memory
2023-07-05 13:24:36.028544: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:36.029527: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:36.029631: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chrY.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.1921 seconds and 3.8 Mi memory
2023-07-05 13:24:36.098280: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.1149 seconds and 80.2 Mi memory
2023-07-05 13:24:36.098529: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:36.103258: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0322 seconds and 3.7 Mi memory
2023-07-05 13:24:36.109991: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.7594 seconds and 19.7 Mi memory
2023-07-05 13:24:36.110252: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:36.113558: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:36.124472: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:36.155771: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chrY.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 73.059 seconds and 13.2 Mi memory
2023-07-05 13:24:36.156058: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chrY.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:36.158869: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.9435 seconds and 82.3 Mi memory
2023-07-05 13:24:36.159136: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:36.173735: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:36.190973: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8494 seconds and 3.7 Mi memory
2023-07-05 13:24:36.268121: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chrY.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 74.9726 seconds and 9.1 Mi memory
2023-07-05 13:24:36.268407: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chrY.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:36.284379: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr1_KI270712v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:36.284903: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chrUn_GL000214v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:36.301631: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr1_KI270712v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0162 seconds and 3.0 Mi memory
2023-07-05 13:24:36.301781: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr1_KI270712v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:36.302462: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chrUn_GL000214v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0165 seconds and 3.0 Mi memory
2023-07-05 13:24:36.302618: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chrUn_GL000214v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:36.309344: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chrUn_GL000214v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0062 seconds and 3.8 Mi memory
2023-07-05 13:24:36.309439: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr1_KI270712v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0072 seconds and 3.8 Mi memory
2023-07-05 13:24:36.330418: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6201 seconds and 3.8 Mi memory
2023-07-05 13:24:36.328919: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3708 seconds and 3.7 Mi memory
2023-07-05 13:24:36.360075: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chrY.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2031 seconds and 3.7 Mi memory
2023-07-05 13:24:36.374741: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2638 seconds and 3.7 Mi memory
2023-07-05 13:24:36.426316: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:36.430103: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:36.433852: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:36.453871: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:36.479141: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:36.486373: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2395 seconds and 62.0 Mi memory
2023-07-05 13:24:36.486764: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:36.506417: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.0887 seconds and 54.4 Mi memory
2023-07-05 13:24:36.506682: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:36.519879: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chrY.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2505 seconds and 3.8 Mi memory
2023-07-05 13:24:36.525445: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.1455 seconds and 43.9 Mi memory
2023-07-05 13:24:36.525712: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:36.619219: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8262 seconds and 3.7 Mi memory
2023-07-05 13:24:36.631860: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.7488 seconds and 98.7 Mi memory
2023-07-05 13:24:36.632096: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:36.661693: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.0805 seconds and 57.6 Mi memory
2023-07-05 13:24:36.661932: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:36.670362: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:36.706532: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2321 seconds and 3.8 Mi memory
2023-07-05 13:24:36.713268: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1608 seconds and 3.7 Mi memory
2023-07-05 13:24:36.725610: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:36.895921: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.8331 seconds and 38.0 Mi memory
2023-07-05 13:24:36.896196: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:36.897897: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8644 seconds and 34.8 Mi memory
2023-07-05 13:24:36.898138: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:36.935109: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:36.942190: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9128 seconds and 3.8 Mi memory
2023-07-05 13:24:36.999061: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.5519 seconds and 111.0 Mi memory
2023-07-05 13:24:36.999304: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:37.039642: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.1764 seconds and 89.5 Mi memory
2023-07-05 13:24:37.039911: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:37.054251: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:37.060074: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.8555 seconds and 30.8 Mi memory
2023-07-05 13:24:37.060476: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:37.087596: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9276 seconds and 3.8 Mi memory
2023-07-05 13:24:37.096926: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8008 seconds and 3.8 Mi memory
2023-07-05 13:24:37.178399: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:37.250871: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3538 seconds and 3.7 Mi memory
2023-07-05 13:24:37.293527: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:37.299461: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.8408 seconds and 73.5 Mi memory
2023-07-05 13:24:37.299843: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:37.339147: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:37.349288: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:37.398413: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8458 seconds and 3.7 Mi memory
2023-07-05 13:24:37.428251: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9016 seconds and 3.8 Mi memory
2023-07-05 13:24:37.436463: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.3219 seconds and 11.6 Mi memory
2023-07-05 13:24:37.436716: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:37.457739: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3964 seconds and 3.8 Mi memory
2023-07-05 13:24:37.517821: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.343 seconds and 10.7 Mi memory
2023-07-05 13:24:37.518200: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:37.525489: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chrY.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 74.1464 seconds and 14.1 Mi memory
2023-07-05 13:24:37.525806: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chrY.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:37.549171: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:37.556802: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270510v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:37.568388: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chrUn_KI270742v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:37.583794: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chrUn_KI270742v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0144 seconds and 3.0 Mi memory
2023-07-05 13:24:37.583941: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chrUn_KI270742v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:37.588531: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chrUn_KI270742v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0042 seconds and 3.7 Mi memory
2023-07-05 13:24:37.617000: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6282 seconds and 3.8 Mi memory
2023-07-05 13:24:37.617690: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7187 seconds and 3.8 Mi memory
2023-07-05 13:24:37.625788: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.1883 seconds and 3.7 Mi memory
2023-07-05 13:24:37.632972: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.1703 seconds and 63.0 Mi memory
2023-07-05 13:24:37.633496: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:37.638787: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1348 seconds and 3.7 Mi memory
2023-07-05 13:24:37.675207: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9106 seconds and 3.8 Mi memory
2023-07-05 13:24:37.684334: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2466 seconds and 83.6 Mi memory
2023-07-05 13:24:37.684591: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:37.682706: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5833 seconds and 3.7 Mi memory
2023-07-05 13:24:37.686192: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:37.707137: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.1881 seconds and 3.8 Mi memory
2023-07-05 13:24:37.766543: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:37.793392: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.0667 seconds and 12.8 Mi memory
2023-07-05 13:24:37.793621: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:37.796008: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:37.799899: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chrY.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.273 seconds and 3.8 Mi memory
2023-07-05 13:24:37.819099: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.5352 seconds and 57.1 Mi memory
2023-07-05 13:24:37.819477: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:37.892667: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270510v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3347 seconds and 41.1 Mi memory
2023-07-05 13:24:37.892914: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270510v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:37.898515: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270510v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0049 seconds and 3.7 Mi memory
2023-07-05 13:24:37.906943: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:37.942705: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chrUn_KI270438v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:37.950013: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:37.950089: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chrUn_KI270438v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0065 seconds and 2.9 Mi memory
2023-07-05 13:24:37.950233: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chrUn_KI270438v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:37.954768: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chrUn_KI270438v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0041 seconds and 3.7 Mi memory
2023-07-05 13:24:37.962718: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:37.972656: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:37.995393: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.2772 seconds and 48.0 Mi memory
2023-07-05 13:24:37.995655: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:38.001739: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2072 seconds and 3.7 Mi memory
2023-07-05 13:24:38.067323: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:38.094966: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:38.135102: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4724 seconds and 3.8 Mi memory
2023-07-05 13:24:38.178394: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chrUn_GL000214v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:38.192741: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.7653 seconds and 15.9 Mi memory
2023-07-05 13:24:38.193009: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:38.195977: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chrUn_GL000214v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0165 seconds and 3.1 Mi memory
2023-07-05 13:24:38.196128: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chrUn_GL000214v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:38.203771: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chrUn_GL000214v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0072 seconds and 3.7 Mi memory
2023-07-05 13:24:38.277363: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.5625 seconds and 114.4 Mi memory
2023-07-05 13:24:38.277594: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:38.320371: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8327 seconds and 3.7 Mi memory
2023-07-05 13:24:38.369026: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:38.372858: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8655 seconds and 3.7 Mi memory
2023-07-05 13:24:38.419554: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4195 seconds and 3.7 Mi memory
2023-07-05 13:24:38.525638: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chrUn_KI270743v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:38.535157: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chrUn_KI270743v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0086 seconds and 3.0 Mi memory
2023-07-05 13:24:38.535299: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chrUn_KI270743v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:38.539536: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chrUn_KI270743v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0038 seconds and 3.7 Mi memory
2023-07-05 13:24:38.544874: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.351 seconds and 3.6 Mi memory
2023-07-05 13:24:38.582450: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.1659 seconds and 34.6 Mi memory
2023-07-05 13:24:38.582690: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:38.590834: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.904 seconds and 8.9 Mi memory
2023-07-05 13:24:38.591083: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:38.637576: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3368 seconds and 3.7 Mi memory
2023-07-05 13:24:38.642805: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.8082 seconds and 111.9 Mi memory
2023-07-05 13:24:38.643061: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:38.648277: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:38.723305: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:38.746328: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.1545 seconds and 3.7 Mi memory
2023-07-05 13:24:38.747211: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:38.752090: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1192 seconds and 3.7 Mi memory
2023-07-05 13:24:38.808064: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:38.808957: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:38.815865: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:38.867453: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8269 seconds and 3.8 Mi memory
2023-07-05 13:24:38.878761: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:38.885837: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8893 seconds and 3.6 Mi memory
2023-07-05 13:24:38.894610: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:38.895927: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.0869 seconds and 59.3 Mi memory
2023-07-05 13:24:38.896284: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:38.933294: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.463 seconds and 65.5 Mi memory
2023-07-05 13:24:38.933527: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.012590: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.1181 seconds and 121.8 Mi memory
2023-07-05 13:24:39.012937: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.027872: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.9025 seconds and 33.5 Mi memory
2023-07-05 13:24:39.028235: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.028221: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr1_KI270708v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 74.2257 seconds and 3.1 Mi memory
2023-07-05 13:24:39.028647: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr1_KI270708v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.033222: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chrUn_KI270743v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:39.038597: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr1_KI270708v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0089 seconds and 3.7 Mi memory
2023-07-05 13:24:39.048344: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chrUn_KI270743v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0141 seconds and 3.0 Mi memory
2023-07-05 13:24:39.048491: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chrUn_KI270743v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.053425: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chrUn_KI270743v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0045 seconds and 3.7 Mi memory
2023-07-05 13:24:39.067066: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6321 seconds and 27.3 Mi memory
2023-07-05 13:24:39.067321: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.075579: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_GL000224v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:39.090978: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_GL000224v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0147 seconds and 3.0 Mi memory
2023-07-05 13:24:39.091155: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_GL000224v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.097197: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_GL000224v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0055 seconds and 3.8 Mi memory
2023-07-05 13:24:39.102486: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:39.119366: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:39.136129: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:39.141244: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270749v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:39.156240: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270749v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0144 seconds and 3.0 Mi memory
2023-07-05 13:24:39.156381: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270749v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.161546: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270749v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0047 seconds and 3.7 Mi memory
2023-07-05 13:24:39.212107: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr1_KI270707v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:39.221057: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr1_KI270707v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0085 seconds and 3.0 Mi memory
2023-07-05 13:24:39.221186: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr1_KI270707v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.225573: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr1_KI270707v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0039 seconds and 3.7 Mi memory
2023-07-05 13:24:39.256794: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270386v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:39.261759: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270386v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0045 seconds and 3.1 Mi memory
2023-07-05 13:24:39.261880: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270386v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.266434: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270386v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0041 seconds and 3.7 Mi memory
2023-07-05 13:24:39.302677: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.1523 seconds and 58.5 Mi memory
2023-07-05 13:24:39.303055: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.313544: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270317v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:39.313625: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6422 seconds and 33.0 Mi memory
2023-07-05 13:24:39.314008: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.319924: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270317v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0057 seconds and 3.1 Mi memory
2023-07-05 13:24:39.320065: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270317v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.322390: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.7831 seconds and 75.4 Mi memory
2023-07-05 13:24:39.322647: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.325128: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6907 seconds and 3.8 Mi memory
2023-07-05 13:24:39.325178: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270317v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0046 seconds and 3.7 Mi memory
2023-07-05 13:24:39.356136: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:39.358849: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:39.359009: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr22_KI270735v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:39.365539: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr22_KI270735v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.006 seconds and 3.0 Mi memory
2023-07-05 13:24:39.365661: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr22_KI270735v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.370779: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr22_KI270735v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0046 seconds and 3.7 Mi memory
2023-07-05 13:24:39.381236: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270382v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:39.382071: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3527 seconds and 3.8 Mi memory
2023-07-05 13:24:39.386352: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270382v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0046 seconds and 2.9 Mi memory
2023-07-05 13:24:39.386471: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270382v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.391389: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270382v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0044 seconds and 3.8 Mi memory
2023-07-05 13:24:39.419034: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3507 seconds and 3.9 Mi memory
2023-07-05 13:24:39.435304: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270305v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:39.443823: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270305v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.008 seconds and 3.1 Mi memory
2023-07-05 13:24:39.443948: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270305v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.450712: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270305v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0063 seconds and 3.7 Mi memory
2023-07-05 13:24:39.480876: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.9337 seconds and 129.8 Mi memory
2023-07-05 13:24:39.481143: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.496736: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrY.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:39.506963: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:39.509141: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:39.531815: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.9506 seconds and 25.6 Mi memory
2023-07-05 13:24:39.532058: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.543365: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8579 seconds and 3.7 Mi memory
2023-07-05 13:24:39.552705: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:39.610909: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.9234 seconds and 152.9 Mi memory
2023-07-05 13:24:39.611293: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.632374: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.3261 seconds and 193.5 Mi memory
2023-07-05 13:24:39.632641: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.670059: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8497 seconds and 3.7 Mi memory
2023-07-05 13:24:39.680944: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3659 seconds and 3.8 Mi memory
2023-07-05 13:24:39.742395: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:39.767287: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr22_KI270738v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:39.779633: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr22_KI270738v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0112 seconds and 3.0 Mi memory
2023-07-05 13:24:39.779796: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr22_KI270738v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.784638: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr22_KI270738v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0044 seconds and 3.7 Mi memory
2023-07-05 13:24:39.787535: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.204 seconds and 3.7 Mi memory
2023-07-05 13:24:39.843229: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 75.5046 seconds and 29.9 Mi memory
2023-07-05 13:24:39.843689: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.858814: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 75.1418 seconds and 26.6 Mi memory
2023-07-05 13:24:39.859136: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.894612: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 75.1188 seconds and 34.6 Mi memory
2023-07-05 13:24:39.895087: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.937319: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 75.471 seconds and 33.3 Mi memory
2023-07-05 13:24:39.937559: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.944751: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.2201 seconds and 15.7 Mi memory
2023-07-05 13:24:39.945127: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:39.993586: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.8731 seconds and 6.5 Mi memory
2023-07-05 13:24:39.993857: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:40.015146: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.5679 seconds and 134.3 Mi memory
2023-07-05 13:24:40.015386: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:40.031526: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 75.0408 seconds and 33.1 Mi memory
2023-07-05 13:24:40.031964: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:40.034205: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:40.054071: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:40.060626: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 75.4862 seconds and 25.8 Mi memory
2023-07-05 13:24:40.060926: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:40.112665: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 75.4789 seconds and 25.2 Mi memory
2023-07-05 13:24:40.113115: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:40.135039: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 75.5874 seconds and 34.0 Mi memory
2023-07-05 13:24:40.135344: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:40.179059: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.1845 seconds and 3.7 Mi memory
2023-07-05 13:24:40.186291: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3261 seconds and 3.7 Mi memory
2023-07-05 13:24:40.189007: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3443 seconds and 3.8 Mi memory
2023-07-05 13:24:40.200981: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:40.203563: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3075 seconds and 3.8 Mi memory
2023-07-05 13:24:40.217066: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9386 seconds and 3.6 Mi memory
2023-07-05 13:24:40.228099: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 75.4861 seconds and 33.1 Mi memory
2023-07-05 13:24:40.228542: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:40.239520: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2935 seconds and 3.7 Mi memory
2023-07-05 13:24:40.248150: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3097 seconds and 3.7 Mi memory
2023-07-05 13:24:40.248727: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 75.3729 seconds and 35.6 Mi memory
2023-07-05 13:24:40.249020: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:40.260634: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 75.4481 seconds and 32.5 Mi memory
2023-07-05 13:24:40.260915: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:40.282491: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.109 seconds and 54.0 Mi memory
2023-07-05 13:24:40.282879: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:40.307127: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:40.338899: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.695 seconds and 3.8 Mi memory
2023-07-05 13:24:40.356049: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:40.361660: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3286 seconds and 3.8 Mi memory
2023-07-05 13:24:40.361710: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:40.367880: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:40.372882: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:40.399139: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3372 seconds and 3.7 Mi memory
2023-07-05 13:24:40.400453: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:40.402394: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9204 seconds and 3.8 Mi memory
2023-07-05 13:24:40.437357: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 75.7242 seconds and 35.1 Mi memory
2023-07-05 13:24:40.437657: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:40.444082: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3298 seconds and 3.8 Mi memory
2023-07-05 13:24:40.458129: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.4844 seconds and 20.2 Mi memory
2023-07-05 13:24:40.458523: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:40.482183: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3457 seconds and 3.8 Mi memory
2023-07-05 13:24:40.513597: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:40.515012: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:40.528097: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.8363 seconds and 49.6 Mi memory
2023-07-05 13:24:40.528504: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:40.531158: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2077 seconds and 3.7 Mi memory
2023-07-05 13:24:40.533011: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2713 seconds and 3.8 Mi memory
2023-07-05 13:24:40.539664: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:40.543513: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3138 seconds and 3.8 Mi memory
2023-07-05 13:24:40.558416: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3083 seconds and 3.8 Mi memory
2023-07-05 13:24:40.564665: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:40.580558: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6833 seconds and 3.7 Mi memory
2023-07-05 13:24:40.587693: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 75.8311 seconds and 36.7 Mi memory
2023-07-05 13:24:40.588016: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:40.588943: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr14_GL000194v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:40.615270: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:40.615537: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 75.9375 seconds and 37.9 Mi memory
2023-07-05 13:24:40.615583: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 75.7857 seconds and 30.6 Mi memory
2023-07-05 13:24:40.615829: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:40.615875: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:40.626505: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:40.652139: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:40.653428: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr14_GL000194v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0633 seconds and 3.0 Mi memory
2023-07-05 13:24:40.653653: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr14_GL000194v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:40.665200: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr14_GL000194v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.011 seconds and 3.8 Mi memory
2023-07-05 13:24:40.676669: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:40.680721: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:40.694598: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:40.697084: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.4966 seconds and 73.7 Mi memory
2023-07-05 13:24:40.697336: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:40.731880: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.3746 seconds and 19.4 Mi memory
2023-07-05 13:24:40.732130: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:40.740763: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.302 seconds and 3.7 Mi memory
2023-07-05 13:24:40.746173: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.9293 seconds and 13.5 Mi memory
2023-07-05 13:24:40.746437: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:40.747567: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8131 seconds and 3.8 Mi memory
2023-07-05 13:24:40.796979: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.6307 seconds and 49.8 Mi memory
2023-07-05 13:24:40.797194: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:40.797318: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:40.803926: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3444 seconds and 3.7 Mi memory
2023-07-05 13:24:40.811968: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 75.7901 seconds and 32.4 Mi memory
2023-07-05 13:24:40.812405: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:40.819032: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2861 seconds and 3.8 Mi memory
2023-07-05 13:24:40.893443: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:40.907536: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2907 seconds and 3.7 Mi memory
2023-07-05 13:24:40.929690: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3129 seconds and 3.8 Mi memory
2023-07-05 13:24:40.933032: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3441 seconds and 3.8 Mi memory
2023-07-05 13:24:40.944562: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:40.970595: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9567 seconds and 3.7 Mi memory
2023-07-05 13:24:40.973234: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3397 seconds and 3.7 Mi memory
2023-07-05 13:24:40.975538: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.7542 seconds and 78.4 Mi memory
2023-07-05 13:24:40.975768: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:40.987044: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2541 seconds and 3.8 Mi memory
2023-07-05 13:24:40.991941: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 76.044 seconds and 31.7 Mi memory
2023-07-05 13:24:40.992363: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:41.051755: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3044 seconds and 3.8 Mi memory
2023-07-05 13:24:41.076679: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:41.082381: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2689 seconds and 3.7 Mi memory
2023-07-05 13:24:41.117667: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:41.119161: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:41.121922: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.5566 seconds and 134.7 Mi memory
2023-07-05 13:24:41.122157: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:41.124569: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:41.193017: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9092 seconds and 3.8 Mi memory
2023-07-05 13:24:41.210332: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:41.232733: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:41.307717: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3142 seconds and 3.9 Mi memory
2023-07-05 13:24:41.365336: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:41.386518: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:41.398815: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8694 seconds and 3.7 Mi memory
2023-07-05 13:24:41.439116: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:41.443044: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8308 seconds and 3.7 Mi memory
2023-07-05 13:24:41.456285: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:41.497437: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 19.0608 seconds and 87.9 Mi memory
2023-07-05 13:24:41.497771: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:41.502324: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1983 seconds and 3.8 Mi memory
2023-07-05 13:24:41.522567: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.4874 seconds and 9.0 Mi memory
2023-07-05 13:24:41.522795: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:41.584451: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:41.604690: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrY.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.1073 seconds and 56.3 Mi memory
2023-07-05 13:24:41.604952: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrY.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:41.607909: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.4054 seconds and 13.9 Mi memory
2023-07-05 13:24:41.608167: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:41.651294: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:41.730323: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:41.731555: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7154 seconds and 3.7 Mi memory
2023-07-05 13:24:41.795572: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.272 seconds and 3.8 Mi memory
2023-07-05 13:24:41.832872: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.224 seconds and 3.7 Mi memory
2023-07-05 13:24:41.902779: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:41.956947: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:41.958751: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chrUn_KI270435v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:41.969488: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chrUn_KI270435v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0096 seconds and 3.0 Mi memory
2023-07-05 13:24:41.969628: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chrUn_KI270435v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:41.974212: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chrUn_KI270435v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0042 seconds and 3.7 Mi memory
2023-07-05 13:24:41.999633: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:42.011827: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrY.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4059 seconds and 3.8 Mi memory
2023-07-05 13:24:42.021667: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:42.041687: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270376v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:42.049421: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270376v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0069 seconds and 3.0 Mi memory
2023-07-05 13:24:42.049560: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270376v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:42.054298: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270376v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0043 seconds and 3.6 Mi memory
2023-07-05 13:24:42.099959: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_GL000218v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:42.114990: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_GL000218v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0145 seconds and 2.9 Mi memory
2023-07-05 13:24:42.115120: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_GL000218v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:42.120371: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_GL000218v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0048 seconds and 3.8 Mi memory
2023-07-05 13:24:42.131091: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6763 seconds and 48.3 Mi memory
2023-07-05 13:24:42.131364: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:42.173843: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr21.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:42.196673: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:42.291814: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8118 seconds and 39.0 Mi memory
2023-07-05 13:24:42.292048: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:42.543572: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chrUn_KI270438v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:42.557398: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chrUn_KI270438v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0128 seconds and 3.1 Mi memory
2023-07-05 13:24:42.557541: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chrUn_KI270438v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:42.562812: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chrUn_KI270438v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0048 seconds and 3.8 Mi memory
2023-07-05 13:24:42.619786: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:42.630478: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9323 seconds and 3.8 Mi memory
2023-07-05 13:24:42.657338: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8591 seconds and 3.8 Mi memory
2023-07-05 13:24:42.809044: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:42.809762: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6867 seconds and 3.7 Mi memory
2023-07-05 13:24:42.847931: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8714 seconds and 3.7 Mi memory
2023-07-05 13:24:42.905464: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7732 seconds and 3.7 Mi memory
2023-07-05 13:24:42.923856: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8687 seconds and 37.4 Mi memory
2023-07-05 13:24:42.924089: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:43.036248: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4862 seconds and 54.5 Mi memory
2023-07-05 13:24:43.036500: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:43.043302: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:43.146378: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8536 seconds and 3.8 Mi memory
2023-07-05 13:24:43.202135: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8518 seconds and 45.8 Mi memory
2023-07-05 13:24:43.202484: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:43.316891: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:43.591660: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5543 seconds and 3.9 Mi memory
2023-07-05 13:24:43.592032: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.524 seconds and 45.9 Mi memory
2023-07-05 13:24:43.592307: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:43.628302: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6647 seconds and 40.1 Mi memory
2023-07-05 13:24:43.628530: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:43.679846: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr16_KI270728v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:43.700187: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr16_KI270728v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.019 seconds and 3.1 Mi memory
2023-07-05 13:24:43.700350: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr16_KI270728v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:43.705396: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr16_KI270728v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0046 seconds and 3.7 Mi memory
2023-07-05 13:24:43.725951: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:43.809367: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8844 seconds and 3.7 Mi memory
2023-07-05 13:24:43.836796: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:43.895881: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:43.906333: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.4077 seconds and 3.6 Mi memory
2023-07-05 13:24:43.932448: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:43.992324: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:44.000545: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:44.044937: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8415 seconds and 3.7 Mi memory
2023-07-05 13:24:44.144847: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.5235 seconds and 70.3 Mi memory
2023-07-05 13:24:44.145230: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:44.209124: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.839 seconds and 27.8 Mi memory
2023-07-05 13:24:44.209349: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:44.249731: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:44.253274: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6239 seconds and 3.8 Mi memory
2023-07-05 13:24:44.298619: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:44.389718: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.8858 seconds and 77.9 Mi memory
2023-07-05 13:24:44.389949: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:44.406334: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:44.418637: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8254 seconds and 3.8 Mi memory
2023-07-05 13:24:44.465973: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6568 seconds and 18.1 Mi memory
2023-07-05 13:24:44.466212: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:44.466794: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.7189 seconds and 43.6 Mi memory
2023-07-05 13:24:44.467040: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:44.512670: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3754 seconds and 56.5 Mi memory
2023-07-05 13:24:44.512901: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:44.532776: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6372 seconds and 52.3 Mi memory
2023-07-05 13:24:44.533135: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:44.534869: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:44.648409: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.1126 seconds and 3.1 Mi memory
2023-07-05 13:24:44.648620: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:44.669879: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8597 seconds and 47.0 Mi memory
2023-07-05 13:24:44.670220: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:44.670439: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0212 seconds and 3.8 Mi memory
2023-07-05 13:24:44.686001: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:44.836761: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr21.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6623 seconds and 46.2 Mi memory
2023-07-05 13:24:44.837031: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr21.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:45.026073: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8159 seconds and 3.7 Mi memory
2023-07-05 13:24:45.125979: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.6835 seconds and 32.3 Mi memory
2023-07-05 13:24:45.126387: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:45.128042: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.7681 seconds and 49.0 Mi memory
2023-07-05 13:24:45.128279: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:45.159750: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:45.199151: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6855 seconds and 3.7 Mi memory
2023-07-05 13:24:45.226469: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7596 seconds and 3.8 Mi memory
2023-07-05 13:24:45.226449: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.7131 seconds and 78.5 Mi memory
2023-07-05 13:24:45.226726: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:45.231055: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr21.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3931 seconds and 3.8 Mi memory
2023-07-05 13:24:45.285028: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr22_KI270732v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:45.293476: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr22_KI270732v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0077 seconds and 2.9 Mi memory
2023-07-05 13:24:45.293612: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr22_KI270732v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:45.298231: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr22_KI270732v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0042 seconds and 3.6 Mi memory
2023-07-05 13:24:45.310843: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6398 seconds and 3.7 Mi memory
2023-07-05 13:24:45.323255: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270511v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:45.329052: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270511v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0053 seconds and 3.0 Mi memory
2023-07-05 13:24:45.329172: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270511v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:45.329565: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7955 seconds and 3.8 Mi memory
2023-07-05 13:24:45.333606: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270511v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.004 seconds and 3.8 Mi memory
2023-07-05 13:24:45.367848: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8999 seconds and 3.6 Mi memory
2023-07-05 13:24:45.379994: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8698 seconds and 62.1 Mi memory
2023-07-05 13:24:45.380200: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:45.380483: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:45.389943: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr4.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:45.445330: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:45.450272: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:45.457559: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:45.466881: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:45.546336: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0786 seconds and 3.1 Mi memory
2023-07-05 13:24:45.546636: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:45.563688: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0164 seconds and 3.7 Mi memory
2023-07-05 13:24:45.589994: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:45.724706: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5785 seconds and 3.7 Mi memory
2023-07-05 13:24:45.732005: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.6418 seconds and 67.9 Mi memory
2023-07-05 13:24:45.732285: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:45.880298: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:45.955449: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8265 seconds and 3.7 Mi memory
2023-07-05 13:24:46.033602: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:46.196999: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.4964 seconds and 78.9 Mi memory
2023-07-05 13:24:46.197270: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:46.225679: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8447 seconds and 3.8 Mi memory
2023-07-05 13:24:46.317333: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:46.329076: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9384 seconds and 3.7 Mi memory
2023-07-05 13:24:46.473547: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2863 seconds and 52.1 Mi memory
2023-07-05 13:24:46.473814: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:46.473855: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9593 seconds and 31.7 Mi memory
2023-07-05 13:24:46.474223: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:46.587587: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3599 seconds and 3.8 Mi memory
2023-07-05 13:24:46.785199: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6578 seconds and 3.7 Mi memory
2023-07-05 13:24:46.905353: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.8096 seconds and 115.8 Mi memory
2023-07-05 13:24:46.905621: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:46.985900: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.1891 seconds and 70.5 Mi memory
2023-07-05 13:24:46.986125: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:47.035181: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.2678 seconds and 38.0 Mi memory
2023-07-05 13:24:47.035443: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:47.059514: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.672 seconds and 49.8 Mi memory
2023-07-05 13:24:47.059869: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:47.115046: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.4144 seconds and 66.3 Mi memory
2023-07-05 13:24:47.115298: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:47.161609: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.2109 seconds and 43.4 Mi memory
2023-07-05 13:24:47.161869: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:47.221922: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:47.250040: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.3131 seconds and 107.6 Mi memory
2023-07-05 13:24:47.250309: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:47.272001: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5387 seconds and 3.7 Mi memory
2023-07-05 13:24:47.300961: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8259 seconds and 3.6 Mi memory
2023-07-05 13:24:47.350558: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.348 seconds and 48.0 Mi memory
2023-07-05 13:24:47.350847: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:47.365607: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9992 seconds and 24.4 Mi memory
2023-07-05 13:24:47.365846: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:47.412083: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6804 seconds and 34.8 Mi memory
2023-07-05 13:24:47.412452: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:47.433314: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4331 seconds and 24.6 Mi memory
2023-07-05 13:24:47.433668: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:47.475812: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:47.568903: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.3697 seconds and 58.4 Mi memory
2023-07-05 13:24:47.569138: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:47.679013: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.7995 seconds and 60.6 Mi memory
2023-07-05 13:24:47.679285: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:47.688717: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.628 seconds and 3.7 Mi memory
2023-07-05 13:24:47.749764: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:47.771628: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.7488 seconds and 34.6 Mi memory
2023-07-05 13:24:47.771994: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:47.837254: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6395 seconds and 56.4 Mi memory
2023-07-05 13:24:47.837490: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:47.866634: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3919 seconds and 3.7 Mi memory
2023-07-05 13:24:47.887678: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:47.951675: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3313 seconds and 46.2 Mi memory
2023-07-05 13:24:47.951916: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:48.034103: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.836 seconds and 3.7 Mi memory
2023-07-05 13:24:48.041546: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.3924 seconds and 41.7 Mi memory
2023-07-05 13:24:48.041932: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:48.127352: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:48.143999: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2375 seconds and 3.8 Mi memory
2023-07-05 13:24:48.199569: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8329 seconds and 3.8 Mi memory
2023-07-05 13:24:48.238489: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2517 seconds and 3.8 Mi memory
2023-07-05 13:24:48.273157: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8386 seconds and 3.6 Mi memory
2023-07-05 13:24:48.299937: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8865 seconds and 3.6 Mi memory
2023-07-05 13:24:48.321020: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2845 seconds and 3.8 Mi memory
2023-07-05 13:24:48.352873: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:48.376167: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4626 seconds and 50.7 Mi memory
2023-07-05 13:24:48.376426: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:48.378184: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.568 seconds and 50.4 Mi memory
2023-07-05 13:24:48.378419: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:48.380674: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:48.394967: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.9317 seconds and 63.5 Mi memory
2023-07-05 13:24:48.395175: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:48.421043: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:48.461390: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.5248 seconds and 68.3 Mi memory
2023-07-05 13:24:48.461650: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:48.467636: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.305 seconds and 3.8 Mi memory
2023-07-05 13:24:48.478540: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:48.521762: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:48.556675: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270521v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:48.555014: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6023 seconds and 3.6 Mi memory
2023-07-05 13:24:48.561423: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:48.564546: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:48.599108: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.1195 seconds and 3.0 Mi memory
2023-07-05 13:24:48.599330: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:48.605966: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.7246 seconds and 17.9 Mi memory
2023-07-05 13:24:48.606222: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:48.612433: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7742 seconds and 3.7 Mi memory
2023-07-05 13:24:48.623619: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.3291 seconds and 90.3 Mi memory
2023-07-05 13:24:48.623880: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:48.625028: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.025 seconds and 3.7 Mi memory
2023-07-05 13:24:48.667381: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:48.683071: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5669 seconds and 3.7 Mi memory
2023-07-05 13:24:48.684703: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:48.694750: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.5152 seconds and 121.7 Mi memory
2023-07-05 13:24:48.695023: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:48.709054: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:48.709219: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9363 seconds and 3.7 Mi memory
2023-07-05 13:24:48.712967: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.462 seconds and 3.8 Mi memory
2023-07-05 13:24:48.824147: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4725 seconds and 3.7 Mi memory
2023-07-05 13:24:48.853431: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:48.864247: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:48.889332: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2823 seconds and 3.8 Mi memory
2023-07-05 13:24:48.908313: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270521v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3507 seconds and 41.1 Mi memory
2023-07-05 13:24:48.908681: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270521v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:48.914561: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270521v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0051 seconds and 3.7 Mi memory
2023-07-05 13:24:48.951868: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270442v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:48.964561: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:49.003650: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3235 seconds and 3.8 Mi memory
2023-07-05 13:24:49.004284: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:49.015209: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6359 seconds and 3.7 Mi memory
2023-07-05 13:24:49.021632: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:49.031302: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.149 seconds and 29.3 Mi memory
2023-07-05 13:24:49.031699: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:49.096536: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5265 seconds and 3.7 Mi memory
2023-07-05 13:24:49.118898: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.1135 seconds and 3.1 Mi memory
2023-07-05 13:24:49.119108: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:49.125091: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.8169 seconds and 54.5 Mi memory
2023-07-05 13:24:49.125357: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:49.140330: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0206 seconds and 3.7 Mi memory
2023-07-05 13:24:49.223606: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:49.245195: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2147 seconds and 58.4 Mi memory
2023-07-05 13:24:49.245473: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:49.248604: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:49.281554: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:49.288334: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.9195 seconds and 44.4 Mi memory
2023-07-05 13:24:49.288725: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:49.306429: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270442v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3539 seconds and 41.4 Mi memory
2023-07-05 13:24:49.306679: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270442v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:49.315932: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270442v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0086 seconds and 3.7 Mi memory
2023-07-05 13:24:49.343070: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3003 seconds and 3.7 Mi memory
2023-07-05 13:24:49.359970: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270579v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:49.421784: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.9908 seconds and 107.6 Mi memory
2023-07-05 13:24:49.422020: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:49.426938: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chrUn_GL000214v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:49.438945: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chrUn_GL000214v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0107 seconds and 3.0 Mi memory
2023-07-05 13:24:49.439108: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chrUn_GL000214v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:49.444443: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chrUn_GL000214v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0049 seconds and 3.8 Mi memory
2023-07-05 13:24:49.553327: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:49.563445: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.63 seconds and 39.0 Mi memory
2023-07-05 13:24:49.563680: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:49.634578: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.7374 seconds and 36.6 Mi memory
2023-07-05 13:24:49.634806: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:49.666707: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270579v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3062 seconds and 41.1 Mi memory
2023-07-05 13:24:49.666952: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270579v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:49.672526: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270579v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0049 seconds and 3.9 Mi memory
2023-07-05 13:24:49.717937: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270320v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:49.757644: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1329 seconds and 3.8 Mi memory
2023-07-05 13:24:49.777396: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:49.806535: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.969 seconds and 31.0 Mi memory
2023-07-05 13:24:49.806901: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:49.869967: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1741 seconds and 3.6 Mi memory
2023-07-05 13:24:49.875959: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.7504 seconds and 58.9 Mi memory
2023-07-05 13:24:49.876344: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:49.878321: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8847 seconds and 33.5 Mi memory
2023-07-05 13:24:49.878571: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:49.890694: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:49.896828: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5971 seconds and 37.2 Mi memory
2023-07-05 13:24:49.897062: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:49.914113: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5368 seconds and 3.7 Mi memory
2023-07-05 13:24:49.983789: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:50.018453: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:50.024598: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270320v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.306 seconds and 41.1 Mi memory
2023-07-05 13:24:50.024853: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270320v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:50.029183: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:50.031456: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270320v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0059 seconds and 3.7 Mi memory
2023-07-05 13:24:50.041574: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9154 seconds and 3.7 Mi memory
2023-07-05 13:24:50.056859: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5943 seconds and 3.7 Mi memory
2023-07-05 13:24:50.076305: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270590v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:50.121090: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.9099 seconds and 44.1 Mi memory
2023-07-05 13:24:50.121337: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:50.127534: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:50.202611: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:50.237696: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:50.251416: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8553 seconds and 3.7 Mi memory
2023-07-05 13:24:50.383850: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270590v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3069 seconds and 41.1 Mi memory
2023-07-05 13:24:50.384223: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270590v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:50.389859: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270590v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0049 seconds and 3.7 Mi memory
2023-07-05 13:24:50.405389: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.8198 seconds and 130.6 Mi memory
2023-07-05 13:24:50.405645: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:50.408748: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1184 seconds and 3.8 Mi memory
2023-07-05 13:24:50.422146: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270544v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:50.475997: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8403 seconds and 3.7 Mi memory
2023-07-05 13:24:50.531180: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9666 seconds and 3.8 Mi memory
2023-07-05 13:24:50.562963: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6835 seconds and 3.8 Mi memory
2023-07-05 13:24:50.575117: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2349 seconds and 60.9 Mi memory
2023-07-05 13:24:50.575506: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:50.588384: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7805 seconds and 3.8 Mi memory
2023-07-05 13:24:50.654562: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:50.665162: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.5615 seconds and 58.8 Mi memory
2023-07-05 13:24:50.665571: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:50.691955: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:50.706347: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8085 seconds and 3.7 Mi memory
2023-07-05 13:24:50.727289: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270544v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3046 seconds and 41.1 Mi memory
2023-07-05 13:24:50.727542: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270544v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:50.730688: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:50.734181: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270544v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.006 seconds and 3.8 Mi memory
2023-07-05 13:24:50.734770: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:50.744426: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270425v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:50.747556: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:50.777063: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3308 seconds and 54.4 Mi memory
2023-07-05 13:24:50.777407: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:50.860606: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.957 seconds and 54.2 Mi memory
2023-07-05 13:24:50.860867: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:50.860766: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.903 seconds and 111.0 Mi memory
2023-07-05 13:24:50.861142: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:50.859593: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.827 seconds and 3.8 Mi memory
2023-07-05 13:24:50.897440: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:50.941084: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5183 seconds and 3.7 Mi memory
2023-07-05 13:24:50.998831: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr16_KI270728v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:51.019960: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr16_KI270728v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0198 seconds and 3.1 Mi memory
2023-07-05 13:24:51.020113: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr16_KI270728v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:51.029432: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr16_KI270728v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0088 seconds and 3.7 Mi memory
2023-07-05 13:24:51.050414: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270425v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3054 seconds and 41.1 Mi memory
2023-07-05 13:24:51.050669: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270425v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:51.057114: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270425v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0058 seconds and 3.7 Mi memory
2023-07-05 13:24:51.078178: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8317 seconds and 3.8 Mi memory
2023-07-05 13:24:51.093713: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270389v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:51.133962: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0117 seconds and 3.8 Mi memory
2023-07-05 13:24:51.182973: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3057 seconds and 3.7 Mi memory
2023-07-05 13:24:51.213832: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:51.293298: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.4279 seconds and 18.9 Mi memory
2023-07-05 13:24:51.293549: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:51.347263: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9408 seconds and 3.8 Mi memory
2023-07-05 13:24:51.400128: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270389v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3057 seconds and 41.1 Mi memory
2023-07-05 13:24:51.400399: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270389v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:51.407032: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:51.411115: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270389v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.01 seconds and 3.8 Mi memory
2023-07-05 13:24:51.426458: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr14_GL000194v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:51.455413: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr14_GL000194v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0278 seconds and 3.0 Mi memory
2023-07-05 13:24:51.455598: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr14_GL000194v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:51.459771: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:51.462180: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr14_GL000194v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0061 seconds and 3.7 Mi memory
2023-07-05 13:24:51.471174: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:51.532865: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7546 seconds and 3.8 Mi memory
2023-07-05 13:24:51.587697: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:51.590073: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2955 seconds and 3.8 Mi memory
2023-07-05 13:24:51.650632: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:51.683838: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:51.699688: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.6445 seconds and 49.9 Mi memory
2023-07-05 13:24:51.699940: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:51.912088: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3356 seconds and 3.8 Mi memory
2023-07-05 13:24:51.963945: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.3477 seconds and 95.3 Mi memory
2023-07-05 13:24:51.964219: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:52.011629: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.9672 seconds and 49.1 Mi memory
2023-07-05 13:24:52.012023: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:52.012830: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.3353 seconds and 107.6 Mi memory
2023-07-05 13:24:52.013084: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:52.116226: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2545 seconds and 3.6 Mi memory
2023-07-05 13:24:52.120611: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2584 seconds and 3.7 Mi memory
2023-07-05 13:24:52.188707: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:52.248288: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:52.261331: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5947 seconds and 3.8 Mi memory
2023-07-05 13:24:52.350865: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.4053 seconds and 57.3 Mi memory
2023-07-05 13:24:52.351122: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:52.358249: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:52.392529: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:52.396813: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:52.411617: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:52.574179: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:52.581272: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.8542 seconds and 56.8 Mi memory
2023-07-05 13:24:52.581554: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:52.588697: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6041 seconds and 22.5 Mi memory
2023-07-05 13:24:52.588960: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:52.596259: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.7046 seconds and 25.6 Mi memory
2023-07-05 13:24:52.596507: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:52.732245: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.5285 seconds and 14.5 Mi memory
2023-07-05 13:24:52.732509: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:52.745956: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.0027 seconds and 118.3 Mi memory
2023-07-05 13:24:52.746221: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:52.852102: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.344 seconds and 75.3 Mi memory
2023-07-05 13:24:52.852504: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:52.882309: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2851 seconds and 3.8 Mi memory
2023-07-05 13:24:52.912940: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:52.954357: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3647 seconds and 3.7 Mi memory
2023-07-05 13:24:52.990646: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:52.994489: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.4407 seconds and 69.8 Mi memory
2023-07-05 13:24:52.994754: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:53.037291: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3365 seconds and 3.6 Mi memory
2023-07-05 13:24:53.070722: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3374 seconds and 3.7 Mi memory
2023-07-05 13:24:53.091946: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8688 seconds and 57.5 Mi memory
2023-07-05 13:24:53.092189: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:53.132644: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:53.160459: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:53.181401: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.5294 seconds and 72.8 Mi memory
2023-07-05 13:24:53.181657: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:53.214870: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4639 seconds and 47.0 Mi memory
2023-07-05 13:24:53.215177: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:53.312360: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2993 seconds and 3.7 Mi memory
2023-07-05 13:24:53.384006: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.9266 seconds and 52.9 Mi memory
2023-07-05 13:24:53.384285: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:53.421758: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:53.447003: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.482 seconds and 3.8 Mi memory
2023-07-05 13:24:53.481706: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.1247 seconds and 77.9 Mi memory
2023-07-05 13:24:53.481991: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:53.498545: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.0973 seconds and 100.9 Mi memory
2023-07-05 13:24:53.498814: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:53.541067: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:53.563554: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2008 seconds and 77.9 Mi memory
2023-07-05 13:24:53.563826: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:53.641184: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6272 seconds and 3.6 Mi memory
2023-07-05 13:24:53.705012: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1226 seconds and 3.7 Mi memory
2023-07-05 13:24:53.746860: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:53.748772: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2328 seconds and 59.3 Mi memory
2023-07-05 13:24:53.749057: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:53.812962: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5969 seconds and 3.7 Mi memory
2023-07-05 13:24:53.839475: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5217 seconds and 51.6 Mi memory
2023-07-05 13:24:53.839717: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:53.850811: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:53.863789: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3012 seconds and 31.8 Mi memory
2023-07-05 13:24:53.864133: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:53.884019: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7908 seconds and 3.7 Mi memory
2023-07-05 13:24:53.901653: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2198 seconds and 65.6 Mi memory
2023-07-05 13:24:53.901911: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:53.911306: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:53.912918: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2598 seconds and 94.6 Mi memory
2023-07-05 13:24:53.913176: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:53.937445: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.3098 seconds and 150.8 Mi memory
2023-07-05 13:24:53.937726: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:53.954776: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4317 seconds and 44.1 Mi memory
2023-07-05 13:24:53.955117: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:54.002916: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.651 seconds and 3.7 Mi memory
2023-07-05 13:24:54.020230: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.4546 seconds and 76.6 Mi memory
2023-07-05 13:24:54.020520: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:54.033615: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:54.043951: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.5032 seconds and 76.7 Mi memory
2023-07-05 13:24:54.044227: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:54.097218: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2028 seconds and 53.9 Mi memory
2023-07-05 13:24:54.097503: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:54.107404: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:54.112054: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9833 seconds and 69.2 Mi memory
2023-07-05 13:24:54.112347: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:54.151141: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.1165 seconds and 3.1 Mi memory
2023-07-05 13:24:54.151335: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:54.172505: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0206 seconds and 3.6 Mi memory
2023-07-05 13:24:54.197532: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:54.203200: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.5077 seconds and 97.0 Mi memory
2023-07-05 13:24:54.203490: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:54.204240: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.8304 seconds and 61.5 Mi memory
2023-07-05 13:24:54.204530: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:54.351735: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2329 seconds and 92.3 Mi memory
2023-07-05 13:24:54.352116: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:54.370413: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3746 seconds and 3.8 Mi memory
2023-07-05 13:24:54.409261: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.9691 seconds and 97.0 Mi memory
2023-07-05 13:24:54.409548: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:54.456632: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.3788 seconds and 77.6 Mi memory
2023-07-05 13:24:54.456932: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:54.463530: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5986 seconds and 3.8 Mi memory
2023-07-05 13:24:54.473944: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.3537 seconds and 152.6 Mi memory
2023-07-05 13:24:54.474228: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:54.536871: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.3032 seconds and 78.1 Mi memory
2023-07-05 13:24:54.537150: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:54.547025: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:54.603473: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.8054 seconds and 129.1 Mi memory
2023-07-05 13:24:54.603756: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:54.659641: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6943 seconds and 50.5 Mi memory
2023-07-05 13:24:54.659897: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:54.710102: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chrUn_GL000214v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:54.722502: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chrUn_GL000214v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0114 seconds and 3.1 Mi memory
2023-07-05 13:24:54.722663: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chrUn_GL000214v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:54.729334: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chrUn_GL000214v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0061 seconds and 3.7 Mi memory
2023-07-05 13:24:54.770055: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5876 seconds and 3.7 Mi memory
2023-07-05 13:24:54.770668: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.52 seconds and 41.1 Mi memory
2023-07-05 13:24:54.770916: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:54.804618: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.8032 seconds and 52.6 Mi memory
2023-07-05 13:24:54.804854: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:54.875281: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:54.904124: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.0493 seconds and 44.6 Mi memory
2023-07-05 13:24:54.904524: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:54.910603: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.4978 seconds and 16.3 Mi memory
2023-07-05 13:24:54.910977: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:54.971633: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:54.982593: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5755 seconds and 38.3 Mi memory
2023-07-05 13:24:54.982833: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:54.988863: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0328 seconds and 3.7 Mi memory
2023-07-05 13:24:54.990400: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1368 seconds and 3.7 Mi memory
2023-07-05 13:24:54.993103: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.246 seconds and 3.8 Mi memory
2023-07-05 13:24:55.000523: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6154 seconds and 3.7 Mi memory
2023-07-05 13:24:55.039693: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1992 seconds and 3.6 Mi memory
2023-07-05 13:24:55.040738: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9276 seconds and 3.7 Mi memory
2023-07-05 13:24:55.107820: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.0848 seconds and 56.9 Mi memory
2023-07-05 13:24:55.108095: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:55.157388: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:55.204977: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:55.251683: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3398 seconds and 3.6 Mi memory
2023-07-05 13:24:55.290616: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:55.308090: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8252 seconds and 3.6 Mi memory
2023-07-05 13:24:55.314402: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:55.320443: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:55.487047: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8263 seconds and 3.8 Mi memory
2023-07-05 13:24:55.507453: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0077 seconds and 3.8 Mi memory
2023-07-05 13:24:55.522748: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.3612 seconds and 17.7 Mi memory
2023-07-05 13:24:55.523014: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:55.540689: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.762 seconds and 49.1 Mi memory
2023-07-05 13:24:55.541092: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:55.607068: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:55.614331: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0496 seconds and 3.8 Mi memory
2023-07-05 13:24:55.689253: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9393 seconds and 3.8 Mi memory
2023-07-05 13:24:55.727652: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8248 seconds and 3.7 Mi memory
2023-07-05 13:24:55.758457: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8444 seconds and 3.8 Mi memory
2023-07-05 13:24:55.768253: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2443 seconds and 3.7 Mi memory
2023-07-05 13:24:55.836071: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:55.838241: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.457 seconds and 61.9 Mi memory
2023-07-05 13:24:55.838488: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:55.845734: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.685 seconds and 26.0 Mi memory
2023-07-05 13:24:55.845969: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:55.907505: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8624 seconds and 3.8 Mi memory
2023-07-05 13:24:55.908037: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8886 seconds and 42.8 Mi memory
2023-07-05 13:24:55.908294: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:55.910025: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7055 seconds and 3.8 Mi memory
2023-07-05 13:24:55.926723: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.3845 seconds and 38.0 Mi memory
2023-07-05 13:24:55.926989: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:55.928589: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8197 seconds and 3.7 Mi memory
2023-07-05 13:24:55.930844: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8324 seconds and 3.7 Mi memory
2023-07-05 13:24:55.934548: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9959 seconds and 3.7 Mi memory
2023-07-05 13:24:55.939449: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.481 seconds and 39.2 Mi memory
2023-07-05 13:24:55.939688: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:55.975170: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8464 seconds and 57.0 Mi memory
2023-07-05 13:24:55.975407: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:56.022768: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1171 seconds and 3.6 Mi memory
2023-07-05 13:24:56.040729: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0192 seconds and 3.7 Mi memory
2023-07-05 13:24:56.043841: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5928 seconds and 27.4 Mi memory
2023-07-05 13:24:56.044082: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:56.073268: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2675 seconds and 3.8 Mi memory
2023-07-05 13:24:56.107056: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9015 seconds and 3.7 Mi memory
2023-07-05 13:24:56.139442: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7863 seconds and 3.7 Mi memory
2023-07-05 13:24:56.204758: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7469 seconds and 3.8 Mi memory
2023-07-05 13:24:56.215234: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8043 seconds and 3.7 Mi memory
2023-07-05 13:24:56.226259: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6882 seconds and 3.6 Mi memory
2023-07-05 13:24:56.236818: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chrUn_GL000214v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:56.246026: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.5613 seconds and 37.1 Mi memory
2023-07-05 13:24:56.246274: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:56.246885: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6421 seconds and 3.7 Mi memory
2023-07-05 13:24:56.250269: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7751 seconds and 3.7 Mi memory
2023-07-05 13:24:56.254638: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chrUn_GL000214v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0167 seconds and 3.1 Mi memory
2023-07-05 13:24:56.254801: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chrUn_GL000214v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:56.261228: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3335 seconds and 3.8 Mi memory
2023-07-05 13:24:56.259854: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr14_GL000194v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:56.261549: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2778 seconds and 3.7 Mi memory
2023-07-05 13:24:56.265294: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chrUn_GL000214v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0099 seconds and 3.8 Mi memory
2023-07-05 13:24:56.295583: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr14_GL000194v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0346 seconds and 3.1 Mi memory
2023-07-05 13:24:56.295774: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr14_GL000194v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:56.309703: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr14_GL000194v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0134 seconds and 3.7 Mi memory
2023-07-05 13:24:56.318999: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7768 seconds and 3.7 Mi memory
2023-07-05 13:24:56.331287: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.5836 seconds and 30.2 Mi memory
2023-07-05 13:24:56.331546: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:56.339929: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:56.343488: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:56.345282: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:56.456663: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.1123 seconds and 2.9 Mi memory
2023-07-05 13:24:56.456864: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:56.468167: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6963 seconds and 3.7 Mi memory
2023-07-05 13:24:56.484340: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0268 seconds and 3.7 Mi memory
2023-07-05 13:24:56.507830: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6094 seconds and 51.6 Mi memory
2023-07-05 13:24:56.508066: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:56.510180: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.4018 seconds and 16.6 Mi memory
2023-07-05 13:24:56.510441: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:56.532312: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6233 seconds and 3.8 Mi memory
2023-07-05 13:24:56.618444: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2861 seconds and 3.7 Mi memory
2023-07-05 13:24:56.654954: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:56.659556: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:56.689625: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:56.695448: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:56.711110: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7347 seconds and 3.8 Mi memory
2023-07-05 13:24:56.757017: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2457 seconds and 3.7 Mi memory
2023-07-05 13:24:56.788498: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:56.789670: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.1336 seconds and 3.1 Mi memory
2023-07-05 13:24:56.790018: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:56.794001: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr16_KI270728v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:56.795922: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.7615 seconds and 66.2 Mi memory
2023-07-05 13:24:56.796167: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:56.808637: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0179 seconds and 3.7 Mi memory
2023-07-05 13:24:56.810368: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr16_KI270728v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0153 seconds and 3.1 Mi memory
2023-07-05 13:24:56.810512: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr16_KI270728v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:56.815854: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr16_KI270728v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0048 seconds and 3.7 Mi memory
2023-07-05 13:24:56.817668: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5706 seconds and 3.7 Mi memory
2023-07-05 13:24:56.825842: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5075 seconds and 50.2 Mi memory
2023-07-05 13:24:56.825890: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:56.826204: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:56.844972: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:56.875514: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:56.875539: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:56.883307: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:56.921232: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:56.991935: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:56.997580: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.052315: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chrUn_GL000214v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.067791: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chrUn_GL000214v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.014 seconds and 3.1 Mi memory
2023-07-05 13:24:57.067970: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chrUn_GL000214v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:57.072727: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1323 seconds and 3.7 Mi memory
2023-07-05 13:24:57.073239: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chrUn_GL000214v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0047 seconds and 3.7 Mi memory
2023-07-05 13:24:57.111154: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chrUn_GL000214v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.129116: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chrUn_GL000214v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0167 seconds and 3.1 Mi memory
2023-07-05 13:24:57.129270: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chrUn_GL000214v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:57.138585: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chrUn_GL000214v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0088 seconds and 3.7 Mi memory
2023-07-05 13:24:57.150808: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6419 seconds and 3.7 Mi memory
2023-07-05 13:24:57.155783: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5043 seconds and 54.5 Mi memory
2023-07-05 13:24:57.156049: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:57.157795: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1129 seconds and 3.9 Mi memory
2023-07-05 13:24:57.185880: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3391 seconds and 3.7 Mi memory
2023-07-05 13:24:57.199931: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.211518: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.226666: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.0117 seconds and 35.6 Mi memory
2023-07-05 13:24:57.227016: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:57.327110: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.354330: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.360942: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.365270: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5259 seconds and 3.8 Mi memory
2023-07-05 13:24:57.401965: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.5253 seconds and 32.1 Mi memory
2023-07-05 13:24:57.402228: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:57.426280: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.494174: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.523522: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.3653 seconds and 17.4 Mi memory
2023-07-05 13:24:57.523793: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:57.558309: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.676211: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.682406: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.695886: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.700936: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.544 seconds and 3.7 Mi memory
2023-07-05 13:24:57.754166: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3511 seconds and 3.7 Mi memory
2023-07-05 13:24:57.785020: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.791300: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr16_KI270728v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.796770: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.818649: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.820635: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.828562: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr16_KI270728v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0361 seconds and 3.0 Mi memory
2023-07-05 13:24:57.828734: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr16_KI270728v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:57.834161: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6062 seconds and 3.7 Mi memory
2023-07-05 13:24:57.835957: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr16_KI270728v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0067 seconds and 3.8 Mi memory
2023-07-05 13:24:57.849477: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3248 seconds and 3.8 Mi memory
2023-07-05 13:24:57.857352: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.869844: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.871213: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.896088: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.069 seconds and 3.8 Mi memory
2023-07-05 13:24:57.898045: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.912019: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.932985: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.932995: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.933029: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.945116: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.954024: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:57.996317: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:58.004232: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.7547 seconds and 33.6 Mi memory
2023-07-05 13:24:58.004462: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:58.027509: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:58.030609: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:58.273912: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9146 seconds and 47.7 Mi memory
2023-07-05 13:24:58.274186: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:58.338317: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5415 seconds and 3.7 Mi memory
2023-07-05 13:24:58.345501: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.8687 seconds and 22.2 Mi memory
2023-07-05 13:24:58.345866: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:58.363635: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4499 seconds and 48.3 Mi memory
2023-07-05 13:24:58.364014: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:58.464970: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:58.481133: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4896 seconds and 80.6 Mi memory
2023-07-05 13:24:58.481518: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:58.484961: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.2949 seconds and 32.8 Mi memory
2023-07-05 13:24:58.485363: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:58.485661: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.597 seconds and 45.4 Mi memory
2023-07-05 13:24:58.485896: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:58.608981: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.0335 seconds and 50.9 Mi memory
2023-07-05 13:24:58.609377: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:58.685056: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5515 seconds and 42.9 Mi memory
2023-07-05 13:24:58.685431: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:58.768402: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.763 seconds and 3.7 Mi memory
2023-07-05 13:24:58.860237: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:58.903891: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6288 seconds and 3.8 Mi memory
2023-07-05 13:24:58.934533: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr4.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.5439 seconds and 183.1 Mi memory
2023-07-05 13:24:58.934960: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr4.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:58.970171: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:59.051486: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5691 seconds and 3.6 Mi memory
2023-07-05 13:24:59.050667: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.669 seconds and 58.0 Mi memory
2023-07-05 13:24:59.050900: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:59.121388: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7565 seconds and 3.7 Mi memory
2023-07-05 13:24:59.125852: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:59.144352: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4587 seconds and 54.2 Mi memory
2023-07-05 13:24:59.144710: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:59.151213: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.6034 seconds and 32.8 Mi memory
2023-07-05 13:24:59.151441: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:59.193582: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:59.228767: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5425 seconds and 3.7 Mi memory
2023-07-05 13:24:59.272781: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6624 seconds and 3.7 Mi memory
2023-07-05 13:24:59.321717: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:59.381199: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6713 seconds and 29.4 Mi memory
2023-07-05 13:24:59.381555: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:59.392880: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:59.456700: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9703 seconds and 3.7 Mi memory
2023-07-05 13:24:59.548825: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:59.645003: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4928 seconds and 3.7 Mi memory
2023-07-05 13:24:59.665438: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4158 seconds and 51.6 Mi memory
2023-07-05 13:24:59.666005: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:59.693336: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:24:59.735006: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.3811 seconds and 50.3 Mi memory
2023-07-05 13:24:59.735388: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:59.786455: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4397 seconds and 3.8 Mi memory
2023-07-05 13:24:59.912039: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.4895 seconds and 53.1 Mi memory
2023-07-05 13:24:59.912430: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:24:59.927487: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:00.122863: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.5572 seconds and 52.4 Mi memory
2023-07-05 13:25:00.123132: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:00.127827: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6411 seconds and 3.7 Mi memory
2023-07-05 13:25:00.177910: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1262 seconds and 3.6 Mi memory
2023-07-05 13:25:00.226200: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:00.290019: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:00.534941: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr4.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.599 seconds and 3.8 Mi memory
2023-07-05 13:25:00.595616: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.623 seconds and 26.1 Mi memory
2023-07-05 13:25:00.595873: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:00.616864: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.93 seconds and 81.2 Mi memory
2023-07-05 13:25:00.617217: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:00.630545: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr3_GL000221v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:00.646209: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr3_GL000221v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0148 seconds and 3.0 Mi memory
2023-07-05 13:25:00.646363: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr3_GL000221v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:00.651826: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr3_GL000221v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.005 seconds and 3.7 Mi memory
2023-07-05 13:25:00.671325: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270388v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:00.675683: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270388v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0039 seconds and 3.0 Mi memory
2023-07-05 13:25:00.675805: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270388v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:00.679906: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270388v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0037 seconds and 3.7 Mi memory
2023-07-05 13:25:00.695052: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270363v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:00.699994: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270363v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0045 seconds and 3.1 Mi memory
2023-07-05 13:25:00.700114: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270363v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:00.702442: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5568 seconds and 3.7 Mi memory
2023-07-05 13:25:00.704577: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270363v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.004 seconds and 3.7 Mi memory
2023-07-05 13:25:00.751490: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270395v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:00.759578: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270395v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0076 seconds and 3.0 Mi memory
2023-07-05 13:25:00.759705: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270395v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:00.768229: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270395v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0081 seconds and 3.7 Mi memory
2023-07-05 13:25:00.784057: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr1_KI270706v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:00.798961: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:00.801284: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr1_KI270706v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0166 seconds and 3.1 Mi memory
2023-07-05 13:25:00.801455: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr1_KI270706v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:00.808704: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.5257 seconds and 93.2 Mi memory
2023-07-05 13:25:00.807362: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr1_KI270706v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0054 seconds and 3.7 Mi memory
2023-07-05 13:25:00.809101: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:00.815848: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr22_KI270736v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:00.827831: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr22_KI270736v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0115 seconds and 2.9 Mi memory
2023-07-05 13:25:00.827965: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr22_KI270736v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:00.833247: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr22_KI270736v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0048 seconds and 3.8 Mi memory
2023-07-05 13:25:00.841231: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr14_GL000194v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:00.843852: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5225 seconds and 43.4 Mi memory
2023-07-05 13:25:00.844247: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:00.856419: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1895 seconds and 3.7 Mi memory
2023-07-05 13:25:00.857872: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr14_GL000194v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0162 seconds and 3.1 Mi memory
2023-07-05 13:25:00.858008: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr14_GL000194v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:00.863374: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr14_GL000194v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0049 seconds and 3.7 Mi memory
2023-07-05 13:25:00.876130: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr14_KI270724v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:00.882832: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr14_KI270724v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0062 seconds and 3.1 Mi memory
2023-07-05 13:25:00.882965: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr14_KI270724v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:00.887468: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr14_KI270724v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0041 seconds and 3.7 Mi memory
2023-07-05 13:25:00.894449: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.512 seconds and 3.7 Mi memory
2023-07-05 13:25:00.916443: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270515v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:00.924657: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270515v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0077 seconds and 2.9 Mi memory
2023-07-05 13:25:00.924781: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270515v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:00.931449: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270515v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0062 seconds and 3.7 Mi memory
2023-07-05 13:25:00.939707: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270417v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:00.944577: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270417v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0044 seconds and 3.0 Mi memory
2023-07-05 13:25:00.944696: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270417v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:00.948978: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270417v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0038 seconds and 3.7 Mi memory
2023-07-05 13:25:00.956120: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:00.967420: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270580v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:00.975043: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270580v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.007 seconds and 3.1 Mi memory
2023-07-05 13:25:00.975172: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270580v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:00.981527: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270580v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0059 seconds and 3.6 Mi memory
2023-07-05 13:25:01.003162: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270517v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.007647: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270517v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.004 seconds and 3.0 Mi memory
2023-07-05 13:25:01.007772: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270517v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.012048: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270517v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0038 seconds and 3.7 Mi memory
2023-07-05 13:25:01.017223: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.023839: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270538v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.031150: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270538v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0068 seconds and 3.1 Mi memory
2023-07-05 13:25:01.031278: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270538v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.036016: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270538v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0043 seconds and 3.8 Mi memory
2023-07-05 13:25:01.048016: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_GL000214v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.060490: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_GL000214v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.012 seconds and 3.1 Mi memory
2023-07-05 13:25:01.060617: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_GL000214v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.065265: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_GL000214v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0042 seconds and 3.7 Mi memory
2023-07-05 13:25:01.079748: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr22_KI270738v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.087854: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr22_KI270738v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0077 seconds and 3.0 Mi memory
2023-07-05 13:25:01.087983: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr22_KI270738v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.092553: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr22_KI270738v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0041 seconds and 3.7 Mi memory
2023-07-05 13:25:01.099864: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270756v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.106381: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270756v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0061 seconds and 3.0 Mi memory
2023-07-05 13:25:01.106502: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270756v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.110916: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270756v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.004 seconds and 3.8 Mi memory
2023-07-05 13:25:01.117571: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270466v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.121959: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270466v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0039 seconds and 2.9 Mi memory
2023-07-05 13:25:01.122079: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270466v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.126622: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270466v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0041 seconds and 3.7 Mi memory
2023-07-05 13:25:01.132620: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270746v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.141008: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270746v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0079 seconds and 3.0 Mi memory
2023-07-05 13:25:01.141131: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270746v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.145566: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270746v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.004 seconds and 3.8 Mi memory
2023-07-05 13:25:01.152477: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270753v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.161573: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270753v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0086 seconds and 2.9 Mi memory
2023-07-05 13:25:01.161698: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270753v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.166901: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270753v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0048 seconds and 3.7 Mi memory
2023-07-05 13:25:01.173818: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270530v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.180172: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270530v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0058 seconds and 3.1 Mi memory
2023-07-05 13:25:01.180296: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270530v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.184569: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270530v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0038 seconds and 3.8 Mi memory
2023-07-05 13:25:01.189935: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr9_KI270718v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.195974: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4601 seconds and 45.1 Mi memory
2023-07-05 13:25:01.196219: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.196272: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr9_KI270718v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0059 seconds and 3.0 Mi memory
2023-07-05 13:25:01.196403: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr9_KI270718v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.200989: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr9_KI270718v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0041 seconds and 3.8 Mi memory
2023-07-05 13:25:01.208089: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270414v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.212613: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270414v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0041 seconds and 3.1 Mi memory
2023-07-05 13:25:01.212739: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270414v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.216923: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270414v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0037 seconds and 3.7 Mi memory
2023-07-05 13:25:01.222497: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270747v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.233419: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270747v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0105 seconds and 3.0 Mi memory
2023-07-05 13:25:01.233547: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270747v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.235680: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.6811 seconds and 58.8 Mi memory
2023-07-05 13:25:01.236078: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.238848: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270747v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0048 seconds and 3.7 Mi memory
2023-07-05 13:25:01.244967: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr14_KI270722v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.260234: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr14_KI270722v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0148 seconds and 3.1 Mi memory
2023-07-05 13:25:01.260360: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr14_KI270722v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.266642: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr14_KI270722v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0058 seconds and 3.8 Mi memory
2023-07-05 13:25:01.273503: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270529v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.278335: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270529v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0044 seconds and 3.1 Mi memory
2023-07-05 13:25:01.278462: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270529v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.282659: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270529v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0037 seconds and 3.7 Mi memory
2023-07-05 13:25:01.297036: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr1_KI270712v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.314647: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr1_KI270712v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0171 seconds and 3.1 Mi memory
2023-07-05 13:25:01.314777: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr1_KI270712v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.320027: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr1_KI270712v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0047 seconds and 3.7 Mi memory
2023-07-05 13:25:01.321827: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4848 seconds and 44.2 Mi memory
2023-07-05 13:25:01.322213: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.335988: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270743v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.341741: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6488 seconds and 44.2 Mi memory
2023-07-05 13:25:01.342090: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.352920: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.756 seconds and 3.8 Mi memory
2023-07-05 13:25:01.354253: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270743v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0177 seconds and 3.2 Mi memory
2023-07-05 13:25:01.354386: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270743v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.360117: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270743v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0052 seconds and 3.8 Mi memory
2023-07-05 13:25:01.398729: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270468v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.403829: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270468v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0045 seconds and 3.1 Mi memory
2023-07-05 13:25:01.403964: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270468v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.408784: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270468v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0044 seconds and 3.7 Mi memory
2023-07-05 13:25:01.419831: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5747 seconds and 3.8 Mi memory
2023-07-05 13:25:01.441543: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270589v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.448425: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270589v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0063 seconds and 3.0 Mi memory
2023-07-05 13:25:01.448568: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270589v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.453202: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270589v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0042 seconds and 3.6 Mi memory
2023-07-05 13:25:01.460044: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5466 seconds and 3.6 Mi memory
2023-07-05 13:25:01.488197: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.0163 seconds and 44.1 Mi memory
2023-07-05 13:25:01.488453: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.495004: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7587 seconds and 3.8 Mi memory
2023-07-05 13:25:01.496398: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.498167: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270582v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.506953: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270582v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0081 seconds and 3.0 Mi memory
2023-07-05 13:25:01.507104: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270582v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.507696: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.7591 seconds and 37.7 Mi memory
2023-07-05 13:25:01.507935: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.512815: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270582v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0052 seconds and 3.8 Mi memory
2023-07-05 13:25:01.529447: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.530137: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr16_KI270728v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.578306: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.587845: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0902 seconds and 3.0 Mi memory
2023-07-05 13:25:01.588173: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.604158: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0152 seconds and 3.8 Mi memory
2023-07-05 13:25:01.608581: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.632757: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr16_KI270728v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.102 seconds and 3.4 Mi memory
2023-07-05 13:25:01.632995: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr16_KI270728v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.636314: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.652517: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr16_KI270728v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0187 seconds and 3.8 Mi memory
2023-07-05 13:25:01.669655: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.4309 seconds and 107.6 Mi memory
2023-07-05 13:25:01.670039: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.672223: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270438v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.681483: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5575 seconds and 3.8 Mi memory
2023-07-05 13:25:01.680179: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270438v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0074 seconds and 3.0 Mi memory
2023-07-05 13:25:01.680309: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270438v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.685095: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270438v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0043 seconds and 3.8 Mi memory
2023-07-05 13:25:01.702777: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr9_KI270720v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.709826: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr9_KI270720v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0064 seconds and 3.1 Mi memory
2023-07-05 13:25:01.709947: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr9_KI270720v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.714476: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr9_KI270720v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0041 seconds and 3.7 Mi memory
2023-07-05 13:25:01.722937: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.3611 seconds and 34.3 Mi memory
2023-07-05 13:25:01.723176: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.728854: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270390v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.733669: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270390v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0043 seconds and 2.9 Mi memory
2023-07-05 13:25:01.733789: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270390v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:01.738399: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270390v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0042 seconds and 3.8 Mi memory
2023-07-05 13:25:01.756689: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr16.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.801592: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:01.860822: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5377 seconds and 3.6 Mi memory
2023-07-05 13:25:01.929425: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:02.025497: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2153 seconds and 3.6 Mi memory
2023-07-05 13:25:02.063603: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.473 seconds and 125.0 Mi memory
2023-07-05 13:25:02.063854: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:02.086401: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.3545 seconds and 49.3 Mi memory
2023-07-05 13:25:02.086646: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:02.123489: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:02.172496: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8317 seconds and 48.3 Mi memory
2023-07-05 13:25:02.172885: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:02.285182: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5612 seconds and 3.8 Mi memory
2023-07-05 13:25:02.327645: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.672 seconds and 68.0 Mi memory
2023-07-05 13:25:02.327911: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:02.333464: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:02.395952: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.7055 seconds and 57.6 Mi memory
2023-07-05 13:25:02.396226: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:02.524660: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2876 seconds and 3.8 Mi memory
2023-07-05 13:25:02.549761: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3526 seconds and 3.8 Mi memory
2023-07-05 13:25:02.603450: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.7576 seconds and 51.8 Mi memory
2023-07-05 13:25:02.603710: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:02.609001: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.61 seconds and 24.9 Mi memory
2023-07-05 13:25:02.609393: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:02.657110: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:02.675656: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1865 seconds and 3.7 Mi memory
2023-07-05 13:25:02.695399: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:02.767691: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr9_KI270717v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:02.780445: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6067 seconds and 3.7 Mi memory
2023-07-05 13:25:02.780582: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.7877 seconds and 43.4 Mi memory
2023-07-05 13:25:02.780967: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:02.822755: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.3619 seconds and 104.1 Mi memory
2023-07-05 13:25:02.822992: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:02.830944: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.4231 seconds and 93.2 Mi memory
2023-07-05 13:25:02.831208: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:02.852993: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6514 seconds and 46.5 Mi memory
2023-07-05 13:25:02.853391: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:02.856912: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:02.890061: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3812 seconds and 3.8 Mi memory
2023-07-05 13:25:02.927297: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.3091 seconds and 3.8 Mi memory
2023-07-05 13:25:02.953748: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5568 seconds and 3.8 Mi memory
2023-07-05 13:25:03.025631: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:03.028351: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.4396 seconds and 165.9 Mi memory
2023-07-05 13:25:03.028732: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.028438: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6854 seconds and 3.8 Mi memory
2023-07-05 13:25:03.067908: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5082 seconds and 34.6 Mi memory
2023-07-05 13:25:03.068281: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.074614: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:03.076082: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6485 seconds and 44.4 Mi memory
2023-07-05 13:25:03.076387: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.110996: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr9_KI270717v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3425 seconds and 41.1 Mi memory
2023-07-05 13:25:03.111251: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr9_KI270717v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.118217: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr9_KI270717v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0063 seconds and 3.7 Mi memory
2023-07-05 13:25:03.141329: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_GL000195v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:03.176750: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5058 seconds and 3.7 Mi memory
2023-07-05 13:25:03.177763: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5731 seconds and 3.7 Mi memory
2023-07-05 13:25:03.181900: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:03.206369: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4085 seconds and 42.7 Mi memory
2023-07-05 13:25:03.206654: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.270708: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:03.281360: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8587 seconds and 42.1 Mi memory
2023-07-05 13:25:03.281610: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.291824: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:03.306406: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:03.310633: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6134 seconds and 45.6 Mi memory
2023-07-05 13:25:03.311024: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.311071: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3767 seconds and 49.2 Mi memory
2023-07-05 13:25:03.311353: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.354608: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.677 seconds and 46.5 Mi memory
2023-07-05 13:25:03.354881: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.439853: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3525 seconds and 3.6 Mi memory
2023-07-05 13:25:03.463734: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_GL000195v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3217 seconds and 41.1 Mi memory
2023-07-05 13:25:03.464098: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_GL000195v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.470787: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_GL000195v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0059 seconds and 3.8 Mi memory
2023-07-05 13:25:03.480072: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_GL000226v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:03.489625: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8059 seconds and 59.6 Mi memory
2023-07-05 13:25:03.489915: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.555909: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:03.557029: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6577 seconds and 48.0 Mi memory
2023-07-05 13:25:03.557308: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.598633: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.7403 seconds and 51.7 Mi memory
2023-07-05 13:25:03.598892: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.599650: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6867 seconds and 58.1 Mi memory
2023-07-05 13:25:03.600032: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.615241: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7636 seconds and 64.5 Mi memory
2023-07-05 13:25:03.615495: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.698515: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0881 seconds and 3.7 Mi memory
2023-07-05 13:25:03.706302: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8351 seconds and 32.9 Mi memory
2023-07-05 13:25:03.706588: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.755969: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.3581 seconds and 38.8 Mi memory
2023-07-05 13:25:03.756254: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.767588: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9478 seconds and 26.9 Mi memory
2023-07-05 13:25:03.767838: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.783452: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.714 seconds and 3.7 Mi memory
2023-07-05 13:25:03.787840: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_GL000226v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3072 seconds and 41.1 Mi memory
2023-07-05 13:25:03.788092: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_GL000226v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.791974: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8577 seconds and 43.1 Mi memory
2023-07-05 13:25:03.792260: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.794616: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_GL000226v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0058 seconds and 3.7 Mi memory
2023-07-05 13:25:03.802454: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:03.825025: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.043 seconds and 3.7 Mi memory
2023-07-05 13:25:03.836453: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.4429 seconds and 77.3 Mi memory
2023-07-05 13:25:03.836839: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.840676: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270755v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:03.850371: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9776 seconds and 31.8 Mi memory
2023-07-05 13:25:03.850755: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.890007: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.968 seconds and 34.1 Mi memory
2023-07-05 13:25:03.890249: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.899244: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0447 seconds and 3.8 Mi memory
2023-07-05 13:25:03.904429: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:03.906567: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8419 seconds and 3.8 Mi memory
2023-07-05 13:25:03.922353: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:03.928938: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9318 seconds and 56.7 Mi memory
2023-07-05 13:25:03.929319: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.932026: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6032 seconds and 3.7 Mi memory
2023-07-05 13:25:03.941104: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.3615 seconds and 29.7 Mi memory
2023-07-05 13:25:03.941374: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:03.958676: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8815 seconds and 3.7 Mi memory
2023-07-05 13:25:03.977672: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1539 seconds and 3.7 Mi memory
2023-07-05 13:25:03.982090: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.0478 seconds and 51.8 Mi memory
2023-07-05 13:25:03.982441: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:04.012589: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.2262 seconds and 43.3 Mi memory
2023-07-05 13:25:04.012994: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:04.016328: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7037 seconds and 3.8 Mi memory
2023-07-05 13:25:04.044764: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.0984 seconds and 47.4 Mi memory
2023-07-05 13:25:04.045046: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:04.058548: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.4491 seconds and 25.6 Mi memory
2023-07-05 13:25:04.058918: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:04.071801: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7159 seconds and 3.8 Mi memory
2023-07-05 13:25:04.082908: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.2794 seconds and 3.1 Mi memory
2023-07-05 13:25:04.083177: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:04.083181: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.1589 seconds and 3.0 Mi memory
2023-07-05 13:25:04.083171: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.1278 seconds and 55.5 Mi memory
2023-07-05 13:25:04.083391: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:04.083458: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:04.091242: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:04.108731: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:04.111615: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0274 seconds and 3.7 Mi memory
2023-07-05 13:25:04.118064: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0338 seconds and 3.8 Mi memory
2023-07-05 13:25:04.144062: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9365 seconds and 3.6 Mi memory
2023-07-05 13:25:04.151174: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270755v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3099 seconds and 41.1 Mi memory
2023-07-05 13:25:04.151415: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270755v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:04.157618: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:04.158017: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270755v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0059 seconds and 3.8 Mi memory
2023-07-05 13:25:04.179424: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1498 seconds and 3.8 Mi memory
2023-07-05 13:25:04.186376: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.3833 seconds and 16.3 Mi memory
2023-07-05 13:25:04.186580: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:04.225717: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6674 seconds and 3.8 Mi memory
2023-07-05 13:25:04.252918: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9706 seconds and 3.7 Mi memory
2023-07-05 13:25:04.280223: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3381 seconds and 3.7 Mi memory
2023-07-05 13:25:04.290541: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9783 seconds and 3.7 Mi memory
2023-07-05 13:25:04.352462: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7528 seconds and 3.7 Mi memory
2023-07-05 13:25:04.352096: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8611 seconds and 3.8 Mi memory
2023-07-05 13:25:04.403625: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.344 seconds and 3.7 Mi memory
2023-07-05 13:25:04.425996: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8249 seconds and 3.8 Mi memory
2023-07-05 13:25:04.428403: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5964 seconds and 3.8 Mi memory
2023-07-05 13:25:04.446516: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6777 seconds and 3.7 Mi memory
2023-07-05 13:25:04.484549: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.8166 seconds and 81.9 Mi memory
2023-07-05 13:25:04.484781: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:04.509750: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6578 seconds and 3.7 Mi memory
2023-07-05 13:25:04.513228: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.326 seconds and 3.7 Mi memory
2023-07-05 13:25:04.513834: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:04.514080: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:04.532412: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr22_KI270733v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:04.558205: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7649 seconds and 3.7 Mi memory
2023-07-05 13:25:04.569296: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:04.585140: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.9773 seconds and 52.3 Mi memory
2023-07-05 13:25:04.585409: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:04.600497: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.893 seconds and 3.8 Mi memory
2023-07-05 13:25:04.613346: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:04.651307: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7602 seconds and 3.7 Mi memory
2023-07-05 13:25:04.655852: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:04.664062: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:04.718098: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7876 seconds and 3.8 Mi memory
2023-07-05 13:25:04.784302: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6997 seconds and 3.7 Mi memory
2023-07-05 13:25:04.803980: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.8917 seconds and 49.6 Mi memory
2023-07-05 13:25:04.804180: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:04.804810: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8214 seconds and 3.7 Mi memory
2023-07-05 13:25:04.806793: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:04.812685: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6881 seconds and 31.8 Mi memory
2023-07-05 13:25:04.812948: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:04.842236: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8282 seconds and 3.7 Mi memory
2023-07-05 13:25:04.851295: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:04.857516: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:04.861984: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chr22_KI270733v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3284 seconds and 41.1 Mi memory
2023-07-05 13:25:04.862352: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr22_KI270733v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:04.869704: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chr22_KI270733v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0066 seconds and 3.7 Mi memory
2023-07-05 13:25:04.879053: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:04.879399: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:04.883447: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270750v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:04.890049: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:04.912513: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1555 seconds and 3.7 Mi memory
2023-07-05 13:25:04.943071: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:04.948537: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9024 seconds and 3.7 Mi memory
2023-07-05 13:25:04.973161: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3569 seconds and 3.8 Mi memory
2023-07-05 13:25:05.024478: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.024608: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.041092: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.3829 seconds and 18.7 Mi memory
2023-07-05 13:25:05.041357: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:05.055100: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.056867: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.057310: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.069101: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.081835: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.083312: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.097541: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.106662: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.108720: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.108811: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.128411: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.133829: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3201 seconds and 3.7 Mi memory
2023-07-05 13:25:05.132685: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.1069 seconds and 3.1 Mi memory
2023-07-05 13:25:05.133008: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:05.136973: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.149694: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.151963: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0182 seconds and 3.8 Mi memory
2023-07-05 13:25:05.160011: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3223 seconds and 3.8 Mi memory
2023-07-05 13:25:05.174127: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.198584: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.199839: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270750v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3158 seconds and 41.1 Mi memory
2023-07-05 13:25:05.200225: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270750v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:05.207422: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270750v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0065 seconds and 3.7 Mi memory
2023-07-05 13:25:05.208758: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.9844 seconds and 81.3 Mi memory
2023-07-05 13:25:05.209001: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:05.236535: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.258197: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270512v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.285698: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2436 seconds and 3.7 Mi memory
2023-07-05 13:25:05.320839: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.332961: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.334647: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.485561: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8993 seconds and 3.8 Mi memory
2023-07-05 13:25:05.569590: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270512v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3108 seconds and 41.1 Mi memory
2023-07-05 13:25:05.569830: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270512v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:05.576028: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270512v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0055 seconds and 3.7 Mi memory
2023-07-05 13:25:05.593938: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.608878: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270311v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.668870: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.3614 seconds and 24.6 Mi memory
2023-07-05 13:25:05.669129: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:05.912684: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_KI270311v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.3032 seconds and 41.1 Mi memory
2023-07-05 13:25:05.912945: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270311v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:05.918382: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2484 seconds and 3.7 Mi memory
2023-07-05 13:25:05.919849: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_KI270311v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0062 seconds and 3.7 Mi memory
2023-07-05 13:25:05.952926: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_GL000220v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:05.965432: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:06.011611: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.8055 seconds and 38.9 Mi memory
2023-07-05 13:25:06.011883: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:06.139277: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.8238 seconds and 36.1 Mi memory
2023-07-05 13:25:06.139565: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:06.270485: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH_.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/chrUn_GL000220v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.317 seconds and 41.1 Mi memory
2023-07-05 13:25:06.270735: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_GL000220v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:06.276404: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bd6/1608/tmpvum8u1gi/_MINIGRAPH__chrUn_GL000220v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0051 seconds and 3.7 Mi memory
2023-07-05 13:25:06.275211: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4702 seconds and 3.8 Mi memory
2023-07-05 13:25:06.382672: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.897 seconds and 3.7 Mi memory
2023-07-05 13:25:06.427435: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:06.574135: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.7525 seconds and 114.5 Mi memory
2023-07-05 13:25:06.574395: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:06.613938: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.5214 seconds and 15.3 Mi memory
2023-07-05 13:25:06.614319: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:06.664900: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:06.668545: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.9744 seconds and 42.6 Mi memory
2023-07-05 13:25:06.668774: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:06.817512: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.7874 seconds and 83.6 Mi memory
2023-07-05 13:25:06.817740: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:06.833021: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6743 seconds and 46.0 Mi memory
2023-07-05 13:25:06.833282: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:06.875892: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2607 seconds and 3.6 Mi memory
2023-07-05 13:25:06.893280: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6834 seconds and 3.7 Mi memory
2023-07-05 13:25:06.906318: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:07.067750: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:07.144078: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3101 seconds and 3.9 Mi memory
2023-07-05 13:25:07.177754: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:07.186372: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr16.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4291 seconds and 87.7 Mi memory
2023-07-05 13:25:07.186639: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr16.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:07.309649: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.4291 seconds and 17.3 Mi memory
2023-07-05 13:25:07.309975: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:07.312754: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1724 seconds and 3.7 Mi memory
2023-07-05 13:25:07.419336: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:07.487710: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.3889 seconds and 38.3 Mi memory
2023-07-05 13:25:07.487979: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:07.492655: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6161 seconds and 45.5 Mi memory
2023-07-05 13:25:07.492999: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:07.523228: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6387 seconds and 30.5 Mi memory
2023-07-05 13:25:07.523510: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:07.559327: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2485 seconds and 3.8 Mi memory
2023-07-05 13:25:07.579242: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5665 seconds and 3.7 Mi memory
2023-07-05 13:25:07.590428: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:07.629320: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9597 seconds and 3.8 Mi memory
2023-07-05 13:25:07.668433: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.8413 seconds and 28.2 Mi memory
2023-07-05 13:25:07.668705: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:07.676357: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.3539 seconds and 18.0 Mi memory
2023-07-05 13:25:07.676618: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:07.684879: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:07.790396: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2152 seconds and 3.7 Mi memory
2023-07-05 13:25:07.844450: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.9643 seconds and 50.7 Mi memory
2023-07-05 13:25:07.844695: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:07.853835: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3651 seconds and 3.8 Mi memory
2023-07-05 13:25:07.865281: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:07.896926: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:07.899366: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:07.928270: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2508 seconds and 3.7 Mi memory
2023-07-05 13:25:07.971663: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.8448 seconds and 123.8 Mi memory
2023-07-05 13:25:07.972042: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:07.974468: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:08.102891: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.9083 seconds and 119.7 Mi memory
2023-07-05 13:25:08.103148: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:08.110139: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr16.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9225 seconds and 3.7 Mi memory
2023-07-05 13:25:08.157653: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270334v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:08.165369: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270334v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0067 seconds and 3.1 Mi memory
2023-07-05 13:25:08.165507: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270334v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:08.169781: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270334v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0038 seconds and 3.8 Mi memory
2023-07-05 13:25:08.175930: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270509v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:08.180328: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270509v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0039 seconds and 3.1 Mi memory
2023-07-05 13:25:08.180446: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270509v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:08.184714: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270509v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0038 seconds and 3.7 Mi memory
2023-07-05 13:25:08.190833: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr22_KI270734v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:08.192880: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3474 seconds and 3.7 Mi memory
2023-07-05 13:25:08.205684: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr22_KI270734v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0144 seconds and 3.0 Mi memory
2023-07-05 13:25:08.205806: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr22_KI270734v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:08.211106: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr22_KI270734v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0048 seconds and 3.8 Mi memory
2023-07-05 13:25:08.224198: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrX.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:08.235882: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:08.261843: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.9393 seconds and 42.4 Mi memory
2023-07-05 13:25:08.262104: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:08.621209: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5896 seconds and 26.4 Mi memory
2023-07-05 13:25:08.621444: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:08.671725: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8533 seconds and 3.7 Mi memory
2023-07-05 13:25:08.685372: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1912 seconds and 3.8 Mi memory
2023-07-05 13:25:08.689152: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4174 seconds and 37.1 Mi memory
2023-07-05 13:25:08.689384: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:08.813470: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:08.953375: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:09.013422: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4891 seconds and 3.7 Mi memory
2023-07-05 13:25:09.144634: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:09.162781: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4933 seconds and 3.7 Mi memory
2023-07-05 13:25:09.218572: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2456 seconds and 3.7 Mi memory
2023-07-05 13:25:09.273750: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5835 seconds and 3.7 Mi memory
2023-07-05 13:25:09.283391: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:09.322459: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:09.330774: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2268 seconds and 3.7 Mi memory
2023-07-05 13:25:09.385717: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.0515 seconds and 46.2 Mi memory
2023-07-05 13:25:09.385953: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:09.397348: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:09.428657: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:09.471117: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2083 seconds and 3.8 Mi memory
2023-07-05 13:25:09.492983: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.522 seconds and 36.4 Mi memory
2023-07-05 13:25:09.493375: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:09.592833: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:09.685994: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0637 seconds and 3.8 Mi memory
2023-07-05 13:25:09.797981: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.9368 seconds and 29.7 Mi memory
2023-07-05 13:25:09.798225: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:09.806303: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:09.957038: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5631 seconds and 50.3 Mi memory
2023-07-05 13:25:09.957416: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:10.095689: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7091 seconds and 3.7 Mi memory
2023-07-05 13:25:10.120391: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4554 seconds and 57.8 Mi memory
2023-07-05 13:25:10.120654: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:10.175947: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5617 seconds and 63.7 Mi memory
2023-07-05 13:25:10.176230: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:10.297548: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.7477 seconds and 27.8 Mi memory
2023-07-05 13:25:10.297936: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:10.322508: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:10.326866: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.67 seconds and 72.3 Mi memory
2023-07-05 13:25:10.327103: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:10.332070: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.1339 seconds and 102.0 Mi memory
2023-07-05 13:25:10.332306: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:10.389722: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.8594 seconds and 39.4 Mi memory
2023-07-05 13:25:10.389997: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:10.580702: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5244 seconds and 36.6 Mi memory
2023-07-05 13:25:10.581076: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:10.675582: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5542 seconds and 3.7 Mi memory
2023-07-05 13:25:10.716046: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5166 seconds and 58.9 Mi memory
2023-07-05 13:25:10.716323: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:10.749687: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:10.912961: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5774 seconds and 58.4 Mi memory
2023-07-05 13:25:10.913242: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:10.965201: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7881 seconds and 3.7 Mi memory
2023-07-05 13:25:11.046145: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:11.067172: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5728 seconds and 3.7 Mi memory
2023-07-05 13:25:11.096907: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.1667 seconds and 52.2 Mi memory
2023-07-05 13:25:11.097158: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:11.099073: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.8064 seconds and 83.0 Mi memory
2023-07-05 13:25:11.099320: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:11.133159: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8053 seconds and 3.8 Mi memory
2023-07-05 13:25:11.213080: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:11.220023: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:11.244433: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6624 seconds and 3.6 Mi memory
2023-07-05 13:25:11.306902: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5079 seconds and 3.7 Mi memory
2023-07-05 13:25:11.372047: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4137 seconds and 3.8 Mi memory
2023-07-05 13:25:11.391283: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0923 seconds and 3.7 Mi memory
2023-07-05 13:25:11.452622: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:11.473341: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5594 seconds and 3.8 Mi memory
2023-07-05 13:25:11.489780: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:11.500509: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7833 seconds and 3.8 Mi memory
2023-07-05 13:25:11.517284: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:11.531848: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:11.546081: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.6883 seconds and 84.4 Mi memory
2023-07-05 13:25:11.546333: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:11.555901: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5897 seconds and 54.0 Mi memory
2023-07-05 13:25:11.556153: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:11.571298: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:11.600051: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:11.653840: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.263 seconds and 3.7 Mi memory
2023-07-05 13:25:11.669890: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.6434 seconds and 95.2 Mi memory
2023-07-05 13:25:11.670147: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:11.748616: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:12.126025: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.8333 seconds and 41.7 Mi memory
2023-07-05 13:25:12.126285: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:12.289327: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7324 seconds and 3.8 Mi memory
2023-07-05 13:25:12.301080: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6349 seconds and 51.6 Mi memory
2023-07-05 13:25:12.301314: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:12.359949: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4529 seconds and 48.6 Mi memory
2023-07-05 13:25:12.360214: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:12.370264: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:12.428681: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3307 seconds and 3.8 Mi memory
2023-07-05 13:25:12.512755: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1796 seconds and 3.7 Mi memory
2023-07-05 13:25:12.562567: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8916 seconds and 3.8 Mi memory
2023-07-05 13:25:12.563784: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:12.595762: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.9354 seconds and 53.7 Mi memory
2023-07-05 13:25:12.596036: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:12.620588: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.442 seconds and 53.8 Mi memory
2023-07-05 13:25:12.620852: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:12.619660: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5509 seconds and 44.7 Mi memory
2023-07-05 13:25:12.619895: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:12.666043: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:12.709579: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.3625 seconds and 86.1 Mi memory
2023-07-05 13:25:12.709821: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:12.740340: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.864 seconds and 65.8 Mi memory
2023-07-05 13:25:12.740617: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:12.769018: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2219 seconds and 3.8 Mi memory
2023-07-05 13:25:12.787627: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:12.865253: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.1688 seconds and 58.2 Mi memory
2023-07-05 13:25:12.865491: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:12.875107: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:12.911120: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.6985 seconds and 61.9 Mi memory
2023-07-05 13:25:12.911362: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:13.125852: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7649 seconds and 3.6 Mi memory
2023-07-05 13:25:13.157748: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8556 seconds and 3.8 Mi memory
2023-07-05 13:25:13.190214: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.599 seconds and 75.1 Mi memory
2023-07-05 13:25:13.190589: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:13.201859: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:13.250665: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1506 seconds and 3.7 Mi memory
2023-07-05 13:25:13.282797: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.7874 seconds and 80.2 Mi memory
2023-07-05 13:25:13.283184: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:13.305580: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6848 seconds and 3.6 Mi memory
2023-07-05 13:25:13.315864: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.9878 seconds and 88.3 Mi memory
2023-07-05 13:25:13.316101: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:13.374504: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2474 seconds and 3.8 Mi memory
2023-07-05 13:25:13.380792: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.5904 seconds and 85.9 Mi memory
2023-07-05 13:25:13.381039: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:13.384419: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7627 seconds and 3.7 Mi memory
2023-07-05 13:25:13.508218: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5328 seconds and 57.9 Mi memory
2023-07-05 13:25:13.508604: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:13.512316: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6122 seconds and 58.4 Mi memory
2023-07-05 13:25:13.512561: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:13.537053: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:13.543330: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:13.546588: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:13.600432: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.5721 seconds and 102.0 Mi memory
2023-07-05 13:25:13.600787: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:13.613731: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:13.624250: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.7655 seconds and 55.2 Mi memory
2023-07-05 13:25:13.624608: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:13.626781: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.7743 seconds and 63.5 Mi memory
2023-07-05 13:25:13.627033: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:13.634642: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:13.830332: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.4749 seconds and 62.2 Mi memory
2023-07-05 13:25:13.830585: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:13.860874: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6694 seconds and 3.7 Mi memory
2023-07-05 13:25:13.928104: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:14.088543: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5791 seconds and 3.7 Mi memory
2023-07-05 13:25:14.172178: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:14.304159: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3497 seconds and 40.0 Mi memory
2023-07-05 13:25:14.304401: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:14.313778: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8004 seconds and 3.6 Mi memory
2023-07-05 13:25:14.390163: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:14.431369: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5259 seconds and 71.7 Mi memory
2023-07-05 13:25:14.431733: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:14.462732: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.2261 seconds and 96.8 Mi memory
2023-07-05 13:25:14.462995: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:14.521210: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7796 seconds and 3.9 Mi memory
2023-07-05 13:25:14.541557: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9136 seconds and 3.8 Mi memory
2023-07-05 13:25:14.596418: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9995 seconds and 3.7 Mi memory
2023-07-05 13:25:14.686134: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.2202 seconds and 80.3 Mi memory
2023-07-05 13:25:14.686386: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:14.693904: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:14.753509: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3554 seconds and 33.6 Mi memory
2023-07-05 13:25:14.753764: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:14.775363: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6656 seconds and 51.8 Mi memory
2023-07-05 13:25:14.775640: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:14.867171: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2416 seconds and 3.6 Mi memory
2023-07-05 13:25:14.921587: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:14.939260: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.073 seconds and 3.8 Mi memory
2023-07-05 13:25:14.992934: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6877 seconds and 3.7 Mi memory
2023-07-05 13:25:15.006767: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:15.018207: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:15.042332: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.3318 seconds and 3.8 Mi memory
2023-07-05 13:25:15.093138: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5224 seconds and 52.4 Mi memory
2023-07-05 13:25:15.093536: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:15.103253: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1912 seconds and 3.7 Mi memory
2023-07-05 13:25:15.137032: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8201 seconds and 3.7 Mi memory
2023-07-05 13:25:15.277932: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.2194 seconds and 52.7 Mi memory
2023-07-05 13:25:15.278204: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:15.291700: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6969 seconds and 32.6 Mi memory
2023-07-05 13:25:15.291965: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:15.342430: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8785 seconds and 3.8 Mi memory
2023-07-05 13:25:15.354162: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5997 seconds and 3.8 Mi memory
2023-07-05 13:25:15.396243: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0145 seconds and 3.7 Mi memory
2023-07-05 13:25:15.408742: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:15.410033: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6021 seconds and 60.4 Mi memory
2023-07-05 13:25:15.410440: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:15.439583: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1553 seconds and 3.8 Mi memory
2023-07-05 13:25:15.445975: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:15.469588: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:15.493804: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5444 seconds and 41.1 Mi memory
2023-07-05 13:25:15.494193: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:15.495598: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4375 seconds and 48.0 Mi memory
2023-07-05 13:25:15.495883: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:15.524256: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:15.524985: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9233 seconds and 3.6 Mi memory
2023-07-05 13:25:15.529356: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:15.546756: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6549 seconds and 25.4 Mi memory
2023-07-05 13:25:15.547028: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:15.547587: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4771 seconds and 22.1 Mi memory
2023-07-05 13:25:15.547866: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:15.570568: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4877 seconds and 30.8 Mi memory
2023-07-05 13:25:15.570783: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:15.636009: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.61 seconds and 39.8 Mi memory
2023-07-05 13:25:15.636304: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:15.648161: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:15.675801: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5374 seconds and 49.9 Mi memory
2023-07-05 13:25:15.676071: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:15.674956: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:15.676156: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5661 seconds and 45.5 Mi memory
2023-07-05 13:25:15.676447: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:15.678677: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5706 seconds and 50.4 Mi memory
2023-07-05 13:25:15.678981: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:15.703894: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.553 seconds and 41.8 Mi memory
2023-07-05 13:25:15.704178: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:15.782093: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6973 seconds and 22.2 Mi memory
2023-07-05 13:25:15.782359: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:15.801182: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4672 seconds and 45.0 Mi memory
2023-07-05 13:25:15.801465: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:15.800437: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9691 seconds and 3.6 Mi memory
2023-07-05 13:25:15.802157: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6922 seconds and 55.4 Mi memory
2023-07-05 13:25:15.802510: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:15.809440: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:15.888763: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:15.893941: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.7641 seconds and 66.3 Mi memory
2023-07-05 13:25:15.894213: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:15.939591: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:16.062465: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:16.132804: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.2041 seconds and 81.3 Mi memory
2023-07-05 13:25:16.133063: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:16.195553: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7629 seconds and 3.7 Mi memory
2023-07-05 13:25:16.305341: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:16.419264: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6426 seconds and 3.6 Mi memory
2023-07-05 13:25:16.560072: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8728 seconds and 3.7 Mi memory
2023-07-05 13:25:16.601711: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:16.657622: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3648 seconds and 3.7 Mi memory
2023-07-05 13:25:16.693235: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5987 seconds and 3.7 Mi memory
2023-07-05 13:25:16.710451: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.4834 seconds and 169.4 Mi memory
2023-07-05 13:25:16.710695: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:16.728485: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4493 seconds and 3.8 Mi memory
2023-07-05 13:25:16.758388: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.2677 seconds and 33.5 Mi memory
2023-07-05 13:25:16.758620: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:16.797179: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:16.856350: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4448 seconds and 3.6 Mi memory
2023-07-05 13:25:16.870848: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:16.896410: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:16.951417: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4547 seconds and 3.7 Mi memory
2023-07-05 13:25:16.952118: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4567 seconds and 3.6 Mi memory
2023-07-05 13:25:16.952662: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:16.956792: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4079 seconds and 3.7 Mi memory
2023-07-05 13:25:16.970692: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3334 seconds and 3.7 Mi memory
2023-07-05 13:25:17.048513: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.2485 seconds and 117.6 Mi memory
2023-07-05 13:25:17.048754: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:17.053613: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3484 seconds and 3.7 Mi memory
2023-07-05 13:25:17.066485: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.7755 seconds and 69.6 Mi memory
2023-07-05 13:25:17.066724: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:17.076106: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3987 seconds and 3.8 Mi memory
2023-07-05 13:25:17.088505: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3051 seconds and 3.8 Mi memory
2023-07-05 13:25:17.090966: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:17.096881: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5489 seconds and 3.8 Mi memory
2023-07-05 13:25:17.113262: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4334 seconds and 3.7 Mi memory
2023-07-05 13:25:17.132626: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3291 seconds and 3.7 Mi memory
2023-07-05 13:25:17.152132: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3cee/16b7/tmphs21winw/HG03492.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4752 seconds and 3.7 Mi memory
2023-07-05 13:25:17.165730: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2706 seconds and 3.7 Mi memory
2023-07-05 13:25:17.172831: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:17.190659: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:17.197049: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6255 seconds and 3.7 Mi memory
2023-07-05 13:25:17.211799: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:17.217559: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:17.226577: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c53/835f/tmpacykrbkf/HG00673.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4242 seconds and 3.7 Mi memory
2023-07-05 13:25:17.268583: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:17.468952: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:17.481099: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7217 seconds and 3.8 Mi memory
2023-07-05 13:25:17.522699: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:17.534092: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:17.551153: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:17.556425: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:17.558384: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:17.563312: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.5453 seconds and 117.1 Mi memory
2023-07-05 13:25:17.563560: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:17.570709: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:17.666637: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:17.677150: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7792 seconds and 55.0 Mi memory
2023-07-05 13:25:17.677523: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:17.793409: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.1563 seconds and 95.9 Mi memory
2023-07-05 13:25:17.793695: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:17.867630: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.9105 seconds and 69.7 Mi memory
2023-07-05 13:25:17.867998: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:18.203263: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0693 seconds and 3.7 Mi memory
2023-07-05 13:25:18.457886: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:18.472895: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6842 seconds and 42.5 Mi memory
2023-07-05 13:25:18.473241: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:18.753708: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrX.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5289 seconds and 150.4 Mi memory
2023-07-05 13:25:18.753973: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrX.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:18.875882: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8263 seconds and 3.6 Mi memory
2023-07-05 13:25:18.914688: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.4851 seconds and 133.1 Mi memory
2023-07-05 13:25:18.914954: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:18.968620: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.645 seconds and 50.3 Mi memory
2023-07-05 13:25:18.968998: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:19.048258: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3698 seconds and 3.8 Mi memory
2023-07-05 13:25:19.051939: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:19.065183: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.591 seconds and 3.7 Mi memory
2023-07-05 13:25:19.177570: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chrUn_KI270442v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:19.177174: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.4807 seconds and 78.4 Mi memory
2023-07-05 13:25:19.177506: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:19.241687: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chrUn_KI270442v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0634 seconds and 3.0 Mi memory
2023-07-05 13:25:19.241880: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chrUn_KI270442v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:19.255310: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chrUn_KI270442v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0129 seconds and 3.7 Mi memory
2023-07-05 13:25:19.257084: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.1814 seconds and 64.6 Mi memory
2023-07-05 13:25:19.257324: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:19.274279: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.7268 seconds and 33.5 Mi memory
2023-07-05 13:25:19.274503: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:19.277080: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6415 seconds and 51.6 Mi memory
2023-07-05 13:25:19.277317: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:19.340411: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.629 seconds and 3.8 Mi memory
2023-07-05 13:25:19.347946: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7541 seconds and 56.0 Mi memory
2023-07-05 13:25:19.348331: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:19.378851: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.3113 seconds and 3.8 Mi memory
2023-07-05 13:25:19.383913: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:19.418917: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8042 seconds and 38.0 Mi memory
2023-07-05 13:25:19.419189: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:19.449632: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:19.531287: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.7808 seconds and 37.6 Mi memory
2023-07-05 13:25:19.531554: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:19.582782: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.3997 seconds and 73.3 Mi memory
2023-07-05 13:25:19.583147: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:19.586511: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:19.609402: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:19.634385: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8394 seconds and 3.7 Mi memory
2023-07-05 13:25:19.780869: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.7338 seconds and 86.9 Mi memory
2023-07-05 13:25:19.781249: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:19.874838: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:19.893445: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.3291 seconds and 3.7 Mi memory
2023-07-05 13:25:19.894506: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6193 seconds and 3.7 Mi memory
2023-07-05 13:25:19.946805: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0779 seconds and 3.8 Mi memory
2023-07-05 13:25:19.965556: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6874 seconds and 3.6 Mi memory
2023-07-05 13:25:20.028162: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.4977 seconds and 36.8 Mi memory
2023-07-05 13:25:20.028400: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:20.052653: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:20.143599: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrX.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3887 seconds and 3.8 Mi memory
2023-07-05 13:25:20.154965: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:20.164876: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7449 seconds and 3.6 Mi memory
2023-07-05 13:25:20.296748: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.0758 seconds and 57.1 Mi memory
2023-07-05 13:25:20.297017: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:20.300850: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:20.315087: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:20.330203: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4144 seconds and 3.8 Mi memory
2023-07-05 13:25:20.336494: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:20.347315: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:20.375419: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.8033 seconds and 33.2 Mi memory
2023-07-05 13:25:20.375677: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:20.375812: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4059 seconds and 3.8 Mi memory
2023-07-05 13:25:20.422944: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.822 seconds and 81.3 Mi memory
2023-07-05 13:25:20.423200: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:20.456355: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:20.501368: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.9444 seconds and 78.1 Mi memory
2023-07-05 13:25:20.501614: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:20.541078: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5118 seconds and 3.7 Mi memory
2023-07-05 13:25:20.604029: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6809 seconds and 56.7 Mi memory
2023-07-05 13:25:20.604297: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:20.635758: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:20.638482: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:20.666862: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.1515 seconds and 56.0 Mi memory
2023-07-05 13:25:20.667147: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:20.668593: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8865 seconds and 3.8 Mi memory
2023-07-05 13:25:20.744473: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.212 seconds and 3.8 Mi memory
2023-07-05 13:25:20.750877: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:20.757453: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3105 seconds and 22.7 Mi memory
2023-07-05 13:25:20.757807: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:20.860918: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5117 seconds and 3.7 Mi memory
2023-07-05 13:25:20.873121: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:20.975924: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9563 seconds and 25.3 Mi memory
2023-07-05 13:25:20.976207: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:20.976749: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.4617 seconds and 108.7 Mi memory
2023-07-05 13:25:20.977148: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:21.035793: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8574 seconds and 3.8 Mi memory
2023-07-05 13:25:21.040021: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.63 seconds and 35.1 Mi memory
2023-07-05 13:25:21.040253: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:21.068664: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.6974 seconds and 58.1 Mi memory
2023-07-05 13:25:21.068941: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:21.123516: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:21.158074: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6329 seconds and 30.7 Mi memory
2023-07-05 13:25:21.158315: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:21.267573: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8911 seconds and 3.8 Mi memory
2023-07-05 13:25:21.288217: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.683 seconds and 3.7 Mi memory
2023-07-05 13:25:21.329030: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.905 seconds and 3.7 Mi memory
2023-07-05 13:25:21.347473: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0496 seconds and 3.8 Mi memory
2023-07-05 13:25:21.356256: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7721 seconds and 3.8 Mi memory
2023-07-05 13:25:21.381041: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:21.462933: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.7869 seconds and 52.9 Mi memory
2023-07-05 13:25:21.463182: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:21.463543: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2054 seconds and 3.8 Mi memory
2023-07-05 13:25:21.472694: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:21.531704: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:21.535695: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:21.534858: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr17_KI270729v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:21.541219: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8914 seconds and 37.3 Mi memory
2023-07-05 13:25:21.541457: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:21.548340: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr17_KI270729v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0125 seconds and 2.9 Mi memory
2023-07-05 13:25:21.548697: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr17_KI270729v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:21.554181: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr17_KI270729v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.005 seconds and 3.7 Mi memory
2023-07-05 13:25:21.569549: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6795 seconds and 31.2 Mi memory
2023-07-05 13:25:21.569901: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:21.585158: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8264 seconds and 3.8 Mi memory
2023-07-05 13:25:21.590747: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6137 seconds and 3.7 Mi memory
2023-07-05 13:25:21.610538: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8 seconds and 57.8 Mi memory
2023-07-05 13:25:21.610894: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:21.625502: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:21.695856: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9462 seconds and 44.8 Mi memory
2023-07-05 13:25:21.696261: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:21.730159: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.7894 seconds and 39.8 Mi memory
2023-07-05 13:25:21.730510: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:21.786750: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.7221 seconds and 28.7 Mi memory
2023-07-05 13:25:21.787132: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:21.792279: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6329 seconds and 3.7 Mi memory
2023-07-05 13:25:21.794957: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:21.842947: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8019 seconds and 3.7 Mi memory
2023-07-05 13:25:21.845597: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:21.959537: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8898 seconds and 3.8 Mi memory
2023-07-05 13:25:21.969055: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:21.998429: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.7957 seconds and 42.9 Mi memory
2023-07-05 13:25:21.998689: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:22.035110: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:22.120621: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:22.126128: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:22.148107: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:22.218807: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7548 seconds and 3.8 Mi memory
2023-07-05 13:25:22.234241: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.669 seconds and 59.2 Mi memory
2023-07-05 13:25:22.234528: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:22.258895: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.5912 seconds and 34.8 Mi memory
2023-07-05 13:25:22.259156: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:22.265822: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.7216 seconds and 88.5 Mi memory
2023-07-05 13:25:22.266073: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:22.310727: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7686 seconds and 3.7 Mi memory
2023-07-05 13:25:22.336301: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.605 seconds and 3.7 Mi memory
2023-07-05 13:25:22.348425: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.1108 seconds and 106.8 Mi memory
2023-07-05 13:25:22.348782: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:22.437144: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8664 seconds and 3.7 Mi memory
2023-07-05 13:25:22.454019: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7858 seconds and 3.7 Mi memory
2023-07-05 13:25:22.460160: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.2852 seconds and 53.3 Mi memory
2023-07-05 13:25:22.460448: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:22.468141: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6801 seconds and 3.7 Mi memory
2023-07-05 13:25:22.470050: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8032 seconds and 66.8 Mi memory
2023-07-05 13:25:22.470322: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:22.506283: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8944 seconds and 3.6 Mi memory
2023-07-05 13:25:22.527690: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6516 seconds and 99.0 Mi memory
2023-07-05 13:25:22.527957: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:22.541993: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.1134 seconds and 76.5 Mi memory
2023-07-05 13:25:22.542251: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:22.616632: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:22.637597: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:22.641653: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.7127 seconds and 81.3 Mi memory
2023-07-05 13:25:22.641964: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:22.669877: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9727 seconds and 3.7 Mi memory
2023-07-05 13:25:22.670644: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:22.715674: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:22.723299: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8513 seconds and 41.6 Mi memory
2023-07-05 13:25:22.723523: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:22.727424: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:22.732352: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:22.743917: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:22.770890: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chrUn_KI270442v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:22.848207: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chrUn_KI270442v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0764 seconds and 3.2 Mi memory
2023-07-05 13:25:22.848396: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chrUn_KI270442v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:22.857628: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5976 seconds and 3.6 Mi memory
2023-07-05 13:25:22.863289: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chrUn_KI270442v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0143 seconds and 3.8 Mi memory
2023-07-05 13:25:22.917067: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.7441 seconds and 43.2 Mi memory
2023-07-05 13:25:22.917331: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:22.920110: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:22.941580: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.4392 seconds and 3.7 Mi memory
2023-07-05 13:25:23.001630: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:23.205695: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.8146 seconds and 37.4 Mi memory
2023-07-05 13:25:23.205956: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:23.206486: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:23.277034: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2775 seconds and 3.7 Mi memory
2023-07-05 13:25:23.296968: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7588 seconds and 58.1 Mi memory
2023-07-05 13:25:23.297252: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:23.306363: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.582 seconds and 3.7 Mi memory
2023-07-05 13:25:23.335184: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.357 seconds and 3.8 Mi memory
2023-07-05 13:25:23.416825: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:23.453246: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1864 seconds and 3.6 Mi memory
2023-07-05 13:25:23.589924: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:23.609635: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3743 seconds and 3.8 Mi memory
2023-07-05 13:25:23.610014: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:23.674020: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:23.792799: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:23.794860: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.152 seconds and 3.8 Mi memory
2023-07-05 13:25:23.797335: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2685 seconds and 3.8 Mi memory
2023-07-05 13:25:23.845244: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3741 seconds and 3.8 Mi memory
2023-07-05 13:25:23.865367: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.1789 seconds and 71.0 Mi memory
2023-07-05 13:25:23.865648: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:23.936068: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:24.069484: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6106 seconds and 43.4 Mi memory
2023-07-05 13:25:24.069834: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:24.086086: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7364 seconds and 3.9 Mi memory
2023-07-05 13:25:24.091885: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.6712 seconds and 91.3 Mi memory
2023-07-05 13:25:24.092162: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:24.178271: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.7077 seconds and 128.8 Mi memory
2023-07-05 13:25:24.178535: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:24.182094: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.264 seconds and 3.7 Mi memory
2023-07-05 13:25:24.191218: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:24.218857: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:24.232826: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:24.264614: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9665 seconds and 3.6 Mi memory
2023-07-05 13:25:24.302608: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:24.405987: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.711 seconds and 67.9 Mi memory
2023-07-05 13:25:24.406248: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:24.423428: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.37 seconds and 28.6 Mi memory
2023-07-05 13:25:24.423656: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:24.433204: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:24.485922: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2792 seconds and 3.8 Mi memory
2023-07-05 13:25:24.522243: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.3662 seconds and 32.3 Mi memory
2023-07-05 13:25:24.522491: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:24.586470: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:24.659081: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1976 seconds and 3.7 Mi memory
2023-07-05 13:25:24.729800: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.345 seconds and 40.2 Mi memory
2023-07-05 13:25:24.730037: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:24.796368: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2533 seconds and 3.7 Mi memory
2023-07-05 13:25:24.805884: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7982 seconds and 44.2 Mi memory
2023-07-05 13:25:24.806145: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:24.846046: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.9798 seconds and 98.1 Mi memory
2023-07-05 13:25:24.846278: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:24.886792: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8337 seconds and 25.5 Mi memory
2023-07-05 13:25:24.887177: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:24.946831: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:24.960884: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8902 seconds and 3.8 Mi memory
2023-07-05 13:25:24.964082: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3766 seconds and 40.0 Mi memory
2023-07-05 13:25:24.964311: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:24.969539: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.545 seconds and 3.7 Mi memory
2023-07-05 13:25:25.004738: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4814 seconds and 3.8 Mi memory
2023-07-05 13:25:25.078963: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:25.098277: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9189 seconds and 3.6 Mi memory
2023-07-05 13:25:25.111545: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:25.180747: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:25.211326: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:25.217669: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6072 seconds and 17.9 Mi memory
2023-07-05 13:25:25.217906: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:25.228569: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:25.442478: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7116 seconds and 3.6 Mi memory
2023-07-05 13:25:25.443563: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5676 seconds and 40.1 Mi memory
2023-07-05 13:25:25.443937: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:25.471765: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.6574 seconds and 90.4 Mi memory
2023-07-05 13:25:25.472001: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:25.547168: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.2623 seconds and 91.4 Mi memory
2023-07-05 13:25:25.547546: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:25.555239: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:25.652541: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7645 seconds and 3.7 Mi memory
2023-07-05 13:25:25.670613: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7055 seconds and 3.7 Mi memory
2023-07-05 13:25:25.726262: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3191 seconds and 3.8 Mi memory
2023-07-05 13:25:25.755378: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.6095 seconds and 94.0 Mi memory
2023-07-05 13:25:25.755668: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:25.834431: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0275 seconds and 3.6 Mi memory
2023-07-05 13:25:25.943203: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8501 seconds and 3.8 Mi memory
2023-07-05 13:25:25.952418: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6148 seconds and 37.2 Mi memory
2023-07-05 13:25:25.952659: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:25.961980: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:25.963035: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6147 seconds and 54.5 Mi memory
2023-07-05 13:25:25.963267: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:25.985053: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:26.017851: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.7017 seconds and 31.2 Mi memory
2023-07-05 13:25:26.018083: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:26.041135: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5962 seconds and 3.7 Mi memory
2023-07-05 13:25:26.061087: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:26.074210: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8554 seconds and 3.6 Mi memory
2023-07-05 13:25:26.126152: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:26.148329: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.3408 seconds and 89.4 Mi memory
2023-07-05 13:25:26.148569: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:26.226580: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.4306 seconds and 31.8 Mi memory
2023-07-05 13:25:26.226819: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:26.231676: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.3651 seconds and 3.8 Mi memory
2023-07-05 13:25:26.298086: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:26.303669: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:26.324737: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:26.523714: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:26.574190: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6207 seconds and 3.8 Mi memory
2023-07-05 13:25:26.705313: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:26.706864: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6879 seconds and 3.7 Mi memory
2023-07-05 13:25:26.714245: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4865 seconds and 3.7 Mi memory
2023-07-05 13:25:26.743380: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7794 seconds and 3.8 Mi memory
2023-07-05 13:25:26.808973: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:26.904828: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:26.966110: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:26.979733: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5968 seconds and 55.7 Mi memory
2023-07-05 13:25:26.980091: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:26.987627: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3612 seconds and 40.0 Mi memory
2023-07-05 13:25:26.987915: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:27.065091: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2179 seconds and 3.8 Mi memory
2023-07-05 13:25:27.226596: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6781 seconds and 3.7 Mi memory
2023-07-05 13:25:27.262330: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4153 seconds and 36.7 Mi memory
2023-07-05 13:25:27.262685: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:27.289155: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:27.365443: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3949 seconds and 45.9 Mi memory
2023-07-05 13:25:27.365834: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:27.369156: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.2475 seconds and 33.6 Mi memory
2023-07-05 13:25:27.369389: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:27.480526: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:27.519048: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7626 seconds and 3.9 Mi memory
2023-07-05 13:25:27.582743: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5939 seconds and 3.7 Mi memory
2023-07-05 13:25:27.632625: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.1786 seconds and 78.5 Mi memory
2023-07-05 13:25:27.632962: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:27.673621: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6373 seconds and 47.5 Mi memory
2023-07-05 13:25:27.673988: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:27.771292: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.1346 seconds and 41.3 Mi memory
2023-07-05 13:25:27.771653: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:27.771596: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:27.793306: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.2604 seconds and 63.2 Mi memory
2023-07-05 13:25:27.793571: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:27.793981: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6449 seconds and 47.0 Mi memory
2023-07-05 13:25:27.794229: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:27.805746: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8248 seconds and 3.8 Mi memory
2023-07-05 13:25:27.900773: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:27.905706: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.3872 seconds and 68.8 Mi memory
2023-07-05 13:25:27.905998: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:27.922894: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.7086 seconds and 68.8 Mi memory
2023-07-05 13:25:27.923178: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:27.952854: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.4798 seconds and 3.7 Mi memory
2023-07-05 13:25:27.959819: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:27.964714: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.6412 seconds and 77.4 Mi memory
2023-07-05 13:25:27.964943: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:27.971439: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3536 seconds and 33.5 Mi memory
2023-07-05 13:25:27.971678: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:27.991770: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.8177 seconds and 42.7 Mi memory
2023-07-05 13:25:27.992153: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:28.033854: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3171 seconds and 54.5 Mi memory
2023-07-05 13:25:28.034100: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:28.080375: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4087 seconds and 32.8 Mi memory
2023-07-05 13:25:28.080622: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:28.107114: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7404 seconds and 3.7 Mi memory
2023-07-05 13:25:28.131403: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.398 seconds and 54.4 Mi memory
2023-07-05 13:25:28.131649: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:28.136500: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.408 seconds and 35.9 Mi memory
2023-07-05 13:25:28.136733: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:28.139060: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.769 seconds and 3.6 Mi memory
2023-07-05 13:25:28.197952: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:28.205429: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9419 seconds and 3.7 Mi memory
2023-07-05 13:25:28.244360: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.0105 seconds and 40.2 Mi memory
2023-07-05 13:25:28.244595: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:28.262455: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5162 seconds and 23.5 Mi memory
2023-07-05 13:25:28.262729: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:28.266393: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:28.280322: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:28.346510: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:28.350223: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.7116 seconds and 20.1 Mi memory
2023-07-05 13:25:28.350587: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:28.370376: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2208 seconds and 3.7 Mi memory
2023-07-05 13:25:28.518702: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8438 seconds and 3.7 Mi memory
2023-07-05 13:25:28.536696: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7417 seconds and 3.6 Mi memory
2023-07-05 13:25:28.633478: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.661 seconds and 3.7 Mi memory
2023-07-05 13:25:28.667673: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.46 seconds and 47.7 Mi memory
2023-07-05 13:25:28.668038: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:28.703967: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:28.751688: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:28.777589: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6452 seconds and 3.8 Mi memory
2023-07-05 13:25:28.786974: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:28.797187: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0246 seconds and 3.9 Mi memory
2023-07-05 13:25:28.802588: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7212 seconds and 3.6 Mi memory
2023-07-05 13:25:28.827729: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5824 seconds and 3.8 Mi memory
2023-07-05 13:25:28.829412: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:28.906148: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8714 seconds and 3.8 Mi memory
2023-07-05 13:25:28.938669: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:28.941470: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8039 seconds and 3.7 Mi memory
2023-07-05 13:25:28.972136: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:28.976607: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:29.024583: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7608 seconds and 3.6 Mi memory
2023-07-05 13:25:29.053964: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/efee/50f3/tmpg_b4cqg6/HG02145.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0609 seconds and 3.8 Mi memory
2023-07-05 13:25:29.061731: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:29.080300: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4049 seconds and 37.9 Mi memory
2023-07-05 13:25:29.080570: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:29.096307: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:29.103794: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7523 seconds and 3.8 Mi memory
2023-07-05 13:25:29.232788: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.642 seconds and 47.2 Mi memory
2023-07-05 13:25:29.233042: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:29.243699: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:29.246055: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:29.311646: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:29.459318: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7904 seconds and 3.7 Mi memory
2023-07-05 13:25:29.541300: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:29.678144: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8837 seconds and 3.7 Mi memory
2023-07-05 13:25:29.678525: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5969 seconds and 3.8 Mi memory
2023-07-05 13:25:29.793034: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1591 seconds and 3.7 Mi memory
2023-07-05 13:25:29.849767: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.9288 seconds and 46.9 Mi memory
2023-07-05 13:25:29.850125: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:29.883174: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:29.913557: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:29.924287: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4738 seconds and 85.9 Mi memory
2023-07-05 13:25:29.924681: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:29.943431: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7097 seconds and 3.7 Mi memory
2023-07-05 13:25:29.947167: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.3908 seconds and 34.0 Mi memory
2023-07-05 13:25:29.947410: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:30.092749: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:30.100049: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chrUn_KI270435v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:30.109346: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chrUn_KI270435v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0083 seconds and 3.1 Mi memory
2023-07-05 13:25:30.109494: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chrUn_KI270435v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:30.114409: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chrUn_KI270435v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0044 seconds and 3.7 Mi memory
2023-07-05 13:25:30.119472: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2127 seconds and 3.7 Mi memory
2023-07-05 13:25:30.123128: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:30.357342: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.4333 seconds and 3.7 Mi memory
2023-07-05 13:25:30.397967: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:30.414059: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6623 seconds and 97.8 Mi memory
2023-07-05 13:25:30.414323: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:30.536110: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.5704 seconds and 3.8 Mi memory
2023-07-05 13:25:30.574971: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6267 seconds and 3.8 Mi memory
2023-07-05 13:25:30.609083: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7351 seconds and 62.3 Mi memory
2023-07-05 13:25:30.609358: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:30.636383: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4067 seconds and 22.4 Mi memory
2023-07-05 13:25:30.636615: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:30.647929: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:30.710011: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:30.711268: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:30.720651: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5386 seconds and 25.6 Mi memory
2023-07-05 13:25:30.720928: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:30.743346: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.795 seconds and 31.5 Mi memory
2023-07-05 13:25:30.743627: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:30.805901: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.3486 seconds and 85.2 Mi memory
2023-07-05 13:25:30.806297: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:30.881746: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0307 seconds and 3.7 Mi memory
2023-07-05 13:25:30.976478: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b181/c98a/tmp2_kpfmi6/HG01361.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0509 seconds and 3.8 Mi memory
2023-07-05 13:25:31.125323: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:31.135595: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6029 seconds and 78.5 Mi memory
2023-07-05 13:25:31.135865: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:31.262852: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7893 seconds and 56.6 Mi memory
2023-07-05 13:25:31.263123: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:31.277300: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6372 seconds and 72.8 Mi memory
2023-07-05 13:25:31.277531: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:31.298073: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.0076 seconds and 17.2 Mi memory
2023-07-05 13:25:31.298428: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:31.303491: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5817 seconds and 3.7 Mi memory
2023-07-05 13:25:31.310197: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7734 seconds and 53.2 Mi memory
2023-07-05 13:25:31.310461: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:31.327846: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3418 seconds and 33.6 Mi memory
2023-07-05 13:25:31.328084: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:31.349323: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6048 seconds and 3.8 Mi memory
2023-07-05 13:25:31.382455: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7451 seconds and 3.7 Mi memory
2023-07-05 13:25:31.388911: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.4832 seconds and 34.2 Mi memory
2023-07-05 13:25:31.389281: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:31.452172: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:31.545671: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:31.575499: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9653 seconds and 3.7 Mi memory
2023-07-05 13:25:31.593805: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.2889 seconds and 23.6 Mi memory
2023-07-05 13:25:31.594203: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:31.603241: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:31.647417: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6845 seconds and 33.5 Mi memory
2023-07-05 13:25:31.647835: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:31.649692: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5249 seconds and 54.6 Mi memory
2023-07-05 13:25:31.649941: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:31.761105: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.346 seconds and 3.8 Mi memory
2023-07-05 13:25:31.792085: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6649 seconds and 51.0 Mi memory
2023-07-05 13:25:31.792361: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:31.870045: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4798 seconds and 3.7 Mi memory
2023-07-05 13:25:31.876699: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:31.885044: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5854 seconds and 30.0 Mi memory
2023-07-05 13:25:31.885328: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:31.892947: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5936 seconds and 3.8 Mi memory
2023-07-05 13:25:31.990665: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:32.044058: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2298/65e1/tmpebantirk/HG01358.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2368 seconds and 3.7 Mi memory
2023-07-05 13:25:32.043331: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:32.083985: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.9715 seconds and 55.7 Mi memory
2023-07-05 13:25:32.084225: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:32.084269: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7553 seconds and 3.8 Mi memory
2023-07-05 13:25:32.110271: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:32.119900: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4135 seconds and 51.8 Mi memory
2023-07-05 13:25:32.120261: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:32.140145: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5449 seconds and 3.8 Mi memory
2023-07-05 13:25:32.209382: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.4369 seconds and 33.5 Mi memory
2023-07-05 13:25:32.209663: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:32.215287: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:32.219670: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6947 seconds and 48.3 Mi memory
2023-07-05 13:25:32.220064: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:32.229092: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5804 seconds and 3.7 Mi memory
2023-07-05 13:25:32.271107: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9599 seconds and 3.8 Mi memory
2023-07-05 13:25:32.271566: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9456 seconds and 22.3 Mi memory
2023-07-05 13:25:32.271810: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:32.272662: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.1928 seconds and 85.6 Mi memory
2023-07-05 13:25:32.273020: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:32.303073: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:32.355553: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:32.483777: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.347 seconds and 3.7 Mi memory
2023-07-05 13:25:32.528132: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:32.549802: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5827 seconds and 22.0 Mi memory
2023-07-05 13:25:32.550164: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:32.626324: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3625 seconds and 3.8 Mi memory
2023-07-05 13:25:32.700161: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.0965 seconds and 87.4 Mi memory
2023-07-05 13:25:32.700445: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:32.718997: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5979 seconds and 3.7 Mi memory
2023-07-05 13:25:32.738371: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5277 seconds and 3.6 Mi memory
2023-07-05 13:25:32.743467: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8572 seconds and 3.6 Mi memory
2023-07-05 13:25:32.748824: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45e3/7f48/tmpu6_vd63k/HG01071.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4705 seconds and 3.8 Mi memory
2023-07-05 13:25:32.762374: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:32.774528: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.5756 seconds and 44.9 Mi memory
2023-07-05 13:25:32.774808: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:32.860117: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:32.878033: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.657 seconds and 3.8 Mi memory
2023-07-05 13:25:32.897446: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:32.968478: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:33.006262: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.5883 seconds and 58.0 Mi memory
2023-07-05 13:25:33.006527: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:33.015543: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2224 seconds and 3.8 Mi memory
2023-07-05 13:25:33.022789: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.7554 seconds and 37.1 Mi memory
2023-07-05 13:25:33.023182: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:33.067048: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.584 seconds and 43.6 Mi memory
2023-07-05 13:25:33.067453: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:33.107017: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8335 seconds and 3.6 Mi memory
2023-07-05 13:25:33.112553: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cd9f/2ce6/tmphkz5qx66/HG02818.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4619 seconds and 3.7 Mi memory
2023-07-05 13:25:33.153366: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.3484 seconds and 32.8 Mi memory
2023-07-05 13:25:33.153749: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:33.155752: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.4509 seconds and 33.6 Mi memory
2023-07-05 13:25:33.156105: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:33.158158: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chrUn_KI270442v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:33.163689: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0785 seconds and 3.8 Mi memory
2023-07-05 13:25:33.168516: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.8621 seconds and 96.1 Mi memory
2023-07-05 13:25:33.168793: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:33.178633: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:33.230391: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chrUn_KI270442v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0713 seconds and 3.2 Mi memory
2023-07-05 13:25:33.230593: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chrUn_KI270442v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:33.231483: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.2919 seconds and 37.9 Mi memory
2023-07-05 13:25:33.231724: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:33.293511: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6825 seconds and 105.8 Mi memory
2023-07-05 13:25:33.293847: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:33.304076: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:33.314698: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:33.334235: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.8102 seconds and 69.7 Mi memory
2023-07-05 13:25:33.334514: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:33.335727: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.3581 seconds and 26.1 Mi memory
2023-07-05 13:25:33.335966: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:33.414567: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.412 seconds and 46.8 Mi memory
2023-07-05 13:25:33.414943: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:33.426133: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:33.506755: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7308 seconds and 3.6 Mi memory
2023-07-05 13:25:33.506757: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.7035 seconds and 89.9 Mi memory
2023-07-05 13:25:33.507067: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:33.508838: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5481 seconds and 54.4 Mi memory
2023-07-05 13:25:33.509076: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:33.569129: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:33.569301: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:33.573821: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:33.586761: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.4947 seconds and 66.7 Mi memory
2023-07-05 13:25:33.727755: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:33.739991: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5831 seconds and 3.8 Mi memory
2023-07-05 13:25:33.740004: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.5208 seconds and 55.1 Mi memory
2023-07-05 13:25:33.740294: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:33.774810: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.8771 seconds and 154.0 Mi memory
2023-07-05 13:25:33.775111: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:33.789741: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.836 seconds and 84.6 Mi memory
2023-07-05 13:25:33.790062: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:33.836542: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.284 seconds and 101.5 Mi memory
2023-07-05 13:25:33.837274: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:33.838001: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:33.838622: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5571 seconds and 37.9 Mi memory
2023-07-05 13:25:33.838860: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:33.853383: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9516 seconds and 43.8 Mi memory
2023-07-05 13:25:33.853673: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:33.855823: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.6083 seconds and 33.1 Mi memory
2023-07-05 13:25:33.856064: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:33.867227: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5191 seconds and 27.1 Mi memory
2023-07-05 13:25:33.867467: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:33.875149: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6424 seconds and 3.8 Mi memory
2023-07-05 13:25:33.900497: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.5967 seconds and 46.2 Mi memory
2023-07-05 13:25:33.900896: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:33.934437: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5977 seconds and 3.6 Mi memory
2023-07-05 13:25:33.947016: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5767 seconds and 3.8 Mi memory
2023-07-05 13:25:33.964129: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:33.978128: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.7083 seconds and 66.6 Mi memory
2023-07-05 13:25:33.978413: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:33.980568: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:33.991851: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.4321 seconds and 29.7 Mi memory
2023-07-05 13:25:33.992139: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:34.054815: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0475 seconds and 3.6 Mi memory
2023-07-05 13:25:34.151928: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.594 seconds and 100.4 Mi memory
2023-07-05 13:25:34.152008: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.96 seconds and 75.5 Mi memory
2023-07-05 13:25:34.152214: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:34.152213: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:34.168902: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.6983 seconds and 85.9 Mi memory
2023-07-05 13:25:34.169194: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:34.180423: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.3706 seconds and 56.2 Mi memory
2023-07-05 13:25:34.200668: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4068 seconds and 45.7 Mi memory
2023-07-05 13:25:34.201048: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:34.204576: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chrUn_KI270442v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:34.228618: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr17_KI270729v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:34.301612: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chrUn_KI270442v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0139 seconds and 3.7 Mi memory
2023-07-05 13:25:34.305322: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7178 seconds and 61.3 Mi memory
2023-07-05 13:25:34.305711: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:34.352543: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:34.358052: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:34.361219: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.531 seconds and 27.4 Mi memory
2023-07-05 13:25:34.361464: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:34.408390: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.3146 seconds and 32.8 Mi memory
2023-07-05 13:25:34.431998: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5751 seconds and 3.7 Mi memory
2023-07-05 13:25:34.448770: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:34.504735: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.9326 seconds and 73.0 Mi memory
2023-07-05 13:25:34.505029: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:34.508579: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:34.529383: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6612 seconds and 3.7 Mi memory
2023-07-05 13:25:34.550337: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.015 seconds and 84.5 Mi memory
2023-07-05 13:25:34.550613: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:34.607195: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4148 seconds and 54.3 Mi memory
2023-07-05 13:25:34.607471: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:34.615296: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8625 seconds and 25.3 Mi memory
2023-07-05 13:25:34.615527: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:34.631001: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3363 seconds and 3.8 Mi memory
2023-07-05 13:25:34.648506: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8087 seconds and 3.8 Mi memory
2023-07-05 13:25:34.800891: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.5887 seconds and 141.1 Mi memory
2023-07-05 13:25:34.801169: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:34.828916: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6089 seconds and 59.1 Mi memory
2023-07-05 13:25:34.829171: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:34.852510: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/566e/dae9/tmpfoglk31q/NA21309.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4367 seconds and 3.8 Mi memory
2023-07-05 13:25:34.894082: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1813 seconds and 19.6 Mi memory
2023-07-05 13:25:34.894317: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:34.906104: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4718 seconds and 46.5 Mi memory
2023-07-05 13:25:34.906501: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:34.929857: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0753 seconds and 3.8 Mi memory
2023-07-05 13:25:34.934206: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5246 seconds and 3.7 Mi memory
2023-07-05 13:25:34.939295: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3764 seconds and 3.8 Mi memory
2023-07-05 13:25:35.067488: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.7543 seconds and 19.7 Mi memory
2023-07-05 13:25:35.067901: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:35.198263: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6561 seconds and 33.5 Mi memory
2023-07-05 13:25:35.198508: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:35.247788: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8856 seconds and 3.8 Mi memory
2023-07-05 13:25:35.254008: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:35.258457: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:35.263992: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3622 seconds and 3.6 Mi memory
2023-07-05 13:25:35.281479: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:35.305606: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1241 seconds and 3.8 Mi memory
2023-07-05 13:25:35.353566: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7372 seconds and 3.7 Mi memory
2023-07-05 13:25:35.372196: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.6707 seconds and 3.8 Mi memory
2023-07-05 13:25:35.446689: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5514 seconds and 3.8 Mi memory
2023-07-05 13:25:35.487503: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:35.499100: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:35.522372: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:35.528914: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:35.578317: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:35.685675: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e204/ab13/tmpy6mohexj/HG02109.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4837 seconds and 3.8 Mi memory
2023-07-05 13:25:35.690692: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3841 seconds and 3.8 Mi memory
2023-07-05 13:25:35.696688: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chrUn_KI270467v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:35.704659: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5808 seconds and 51.4 Mi memory
2023-07-05 13:25:35.705012: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:35.706669: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chrUn_KI270467v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0089 seconds and 3.1 Mi memory
2023-07-05 13:25:35.706809: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chrUn_KI270467v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:35.712809: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chrUn_KI270467v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0055 seconds and 3.7 Mi memory
2023-07-05 13:25:35.737094: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de0f/d2c0/tmpp94vfd0t/HG02486.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1288 seconds and 3.8 Mi memory
2023-07-05 13:25:35.738829: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:35.766207: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9643 seconds and 3.8 Mi memory
2023-07-05 13:25:35.765609: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:35.767437: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6984 seconds and 3.7 Mi memory
2023-07-05 13:25:35.781081: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.273 seconds and 3.7 Mi memory
2023-07-05 13:25:35.786003: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:35.841618: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9573 seconds and 51.8 Mi memory
2023-07-05 13:25:35.842040: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:35.856935: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.6872 seconds and 3.8 Mi memory
2023-07-05 13:25:35.946177: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7467 seconds and 3.8 Mi memory
2023-07-05 13:25:35.946994: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:35.963512: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a34b/b2cb/tmp7nipvrnb/HG02723.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0561 seconds and 3.6 Mi memory
2023-07-05 13:25:35.975606: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.64 seconds and 3.7 Mi memory
2023-07-05 13:25:36.079364: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.5499 seconds and 3.8 Mi memory
2023-07-05 13:25:36.109142: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.1943 seconds and 34.6 Mi memory
2023-07-05 13:25:36.109424: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:36.113976: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.526 seconds and 3.7 Mi memory
2023-07-05 13:25:36.142777: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:36.143465: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.3053 seconds and 3.7 Mi memory
2023-07-05 13:25:36.151864: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.7526 seconds and 25.3 Mi memory
2023-07-05 13:25:36.152135: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:36.162789: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.6159 seconds and 31.2 Mi memory
2023-07-05 13:25:36.163043: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:36.180512: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.3894 seconds and 3.7 Mi memory
2023-07-05 13:25:36.254181: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:36.285701: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:36.294719: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4649 seconds and 3.8 Mi memory
2023-07-05 13:25:36.297323: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.3179 seconds and 3.7 Mi memory
2023-07-05 13:25:36.307145: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.5658 seconds and 3.7 Mi memory
2023-07-05 13:25:36.313073: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:36.358022: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.5819 seconds and 3.8 Mi memory
2023-07-05 13:25:36.368186: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6618 seconds and 3.7 Mi memory
2023-07-05 13:25:36.384393: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.3913 seconds and 3.9 Mi memory
2023-07-05 13:25:36.395982: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2426 seconds and 3.7 Mi memory
2023-07-05 13:25:36.470099: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:36.486940: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.3336 seconds and 3.8 Mi memory
2023-07-05 13:25:36.497136: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6538 seconds and 3.7 Mi memory
2023-07-05 13:25:36.527311: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4653 seconds and 54.5 Mi memory
2023-07-05 13:25:36.527974: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:36.539618: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr22_KI270733v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:36.560762: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chr22_KI270733v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0203 seconds and 3.1 Mi memory
2023-07-05 13:25:36.560925: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr22_KI270733v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:36.565709: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chr22_KI270733v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0044 seconds and 3.7 Mi memory
2023-07-05 13:25:36.599537: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.4293 seconds and 3.7 Mi memory
2023-07-05 13:25:36.657724: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chrUn_GL000220v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:36.666910: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/chrUn_GL000220v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0088 seconds and 3.0 Mi memory
2023-07-05 13:25:36.667032: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chrUn_GL000220v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:36.671154: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/81ea/148f/tmpojznr15h/HG02559.1_chrUn_GL000220v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0037 seconds and 3.7 Mi memory
2023-07-05 13:25:36.718844: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6084 seconds and 3.7 Mi memory
2023-07-05 13:25:36.720075: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.0084 seconds and 56.0 Mi memory
2023-07-05 13:25:36.720350: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:36.726705: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2207 seconds and 3.7 Mi memory
2023-07-05 13:25:36.757876: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:36.772810: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6456 seconds and 42.2 Mi memory
2023-07-05 13:25:36.773208: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:36.801642: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6378 seconds and 3.8 Mi memory
2023-07-05 13:25:36.817301: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6642 seconds and 3.8 Mi memory
2023-07-05 13:25:36.821454: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:36.828272: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2767 seconds and 3.7 Mi memory
2023-07-05 13:25:36.855890: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.4995 seconds and 63.0 Mi memory
2023-07-05 13:25:36.856257: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:36.866450: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:36.930100: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.6259 seconds and 31.8 Mi memory
2023-07-05 13:25:36.930354: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:36.988459: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:37.009978: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:37.012439: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:37.099347: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.883 seconds and 32.8 Mi memory
2023-07-05 13:25:37.099719: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:37.106747: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:37.148072: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:37.194827: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:37.238438: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:37.245754: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:37.255419: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:37.291415: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:37.296187: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:37.302583: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:37.313229: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:37.329252: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:37.360119: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:37.379322: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr17.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:37.471775: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7506 seconds and 3.7 Mi memory
2023-07-05 13:25:37.482096: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.625 seconds and 3.7 Mi memory
2023-07-05 13:25:37.499004: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.85 seconds and 56.3 Mi memory
2023-07-05 13:25:37.499249: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:37.551027: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:37.556572: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6252 seconds and 3.6 Mi memory
2023-07-05 13:25:37.559746: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.2578 seconds and 239.1 Mi memory
2023-07-05 13:25:37.559992: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:37.561935: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.1089 seconds and 35.4 Mi memory
2023-07-05 13:25:37.562210: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:37.589953: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4893 seconds and 3.7 Mi memory
2023-07-05 13:25:37.601814: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9975 seconds and 24.5 Mi memory
2023-07-05 13:25:37.602088: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:37.634065: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:37.653772: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:37.663670: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:37.981295: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ffe/d75e/tmpc72kbnlr/HG03540.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4526 seconds and 3.8 Mi memory
2023-07-05 13:25:38.000914: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.1025 seconds and 39.7 Mi memory
2023-07-05 13:25:38.001276: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:38.037546: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.5246 seconds and 47.7 Mi memory
2023-07-05 13:25:38.037768: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:38.137203: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.1641 seconds and 87.0 Mi memory
2023-07-05 13:25:38.137556: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:38.239808: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/494b/7abf/tmpwr_7qi5o/HG03486.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4657 seconds and 3.8 Mi memory
2023-07-05 13:25:38.274600: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7116 seconds and 3.8 Mi memory
2023-07-05 13:25:38.378865: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.0739 seconds and 40.1 Mi memory
2023-07-05 13:25:38.379106: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:38.399485: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.796 seconds and 3.6 Mi memory
2023-07-05 13:25:38.443637: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:38.446383: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9461 seconds and 3.7 Mi memory
2023-07-05 13:25:38.600743: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:38.677482: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.639 seconds and 3.8 Mi memory
2023-07-05 13:25:38.713559: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7114 seconds and 3.8 Mi memory
2023-07-05 13:25:38.726986: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.3681 seconds and 36.1 Mi memory
2023-07-05 13:25:38.727220: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:38.762725: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:38.802458: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:38.822972: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:38.861521: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4816 seconds and 3.7 Mi memory
2023-07-05 13:25:38.914359: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:38.956929: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6413 seconds and 18.9 Mi memory
2023-07-05 13:25:38.957199: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:39.083971: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.467 seconds and 35.1 Mi memory
2023-07-05 13:25:39.084212: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:39.130689: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9509 seconds and 30.7 Mi memory
2023-07-05 13:25:39.130990: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:39.201601: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4737 seconds and 3.7 Mi memory
2023-07-05 13:25:39.256907: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:39.325607: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1872 seconds and 3.6 Mi memory
2023-07-05 13:25:39.431667: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:39.661097: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7032 seconds and 3.8 Mi memory
2023-07-05 13:25:39.671271: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1104 seconds and 3.8 Mi memory
2023-07-05 13:25:39.705147: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5732 seconds and 3.8 Mi memory
2023-07-05 13:25:39.725239: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6402 seconds and 3.7 Mi memory
2023-07-05 13:25:39.801931: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:39.824340: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:39.829337: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.8378 seconds and 84.8 Mi memory
2023-07-05 13:25:39.829559: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:39.846752: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:39.850709: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr2_KI270715v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:39.862742: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr2_KI270715v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.011 seconds and 2.9 Mi memory
2023-07-05 13:25:39.862891: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr2_KI270715v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:39.867992: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr2_KI270715v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0046 seconds and 3.6 Mi memory
2023-07-05 13:25:39.886588: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr5_GL000208v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:39.894446: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr5_GL000208v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0074 seconds and 3.2 Mi memory
2023-07-05 13:25:39.894575: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr5_GL000208v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:39.899223: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr5_GL000208v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0041 seconds and 3.6 Mi memory
2023-07-05 13:25:39.917649: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270392v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:39.922202: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270392v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0041 seconds and 3.0 Mi memory
2023-07-05 13:25:39.922320: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270392v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:39.926776: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270392v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.004 seconds and 3.7 Mi memory
2023-07-05 13:25:39.986472: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270383v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0039 seconds and 3.1 Mi memory
2023-07-05 13:25:39.986592: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270383v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:39.990545: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270383v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0035 seconds and 3.6 Mi memory
2023-07-05 13:25:39.996412: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270435v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:40.094757: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.6062 seconds and 33.3 Mi memory
2023-07-05 13:25:40.095155: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:40.183533: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9027 seconds and 40.8 Mi memory
2023-07-05 13:25:40.183809: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:40.441307: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.5802 seconds and 41.0 Mi memory
2023-07-05 13:25:40.441571: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:40.514846: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.5661 seconds and 62.7 Mi memory
2023-07-05 13:25:40.515139: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:40.570432: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4744 seconds and 3.8 Mi memory
2023-07-05 13:25:40.584636: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.8561 seconds and 56.3 Mi memory
2023-07-05 13:25:40.584888: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:40.616932: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:40.673002: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.5293 seconds and 64.7 Mi memory
2023-07-05 13:25:40.673243: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:40.848737: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0184 seconds and 3.7 Mi memory
2023-07-05 13:25:40.925095: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.96 seconds and 29.9 Mi memory
2023-07-05 13:25:40.925336: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:40.928345: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7437 seconds and 3.8 Mi memory
2023-07-05 13:25:41.015901: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.4458 seconds and 40.5 Mi memory
2023-07-05 13:25:41.016287: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:41.020772: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.761 seconds and 49.8 Mi memory
2023-07-05 13:25:41.020986: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:41.021924: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4913 seconds and 21.5 Mi memory
2023-07-05 13:25:41.022199: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:41.086759: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:41.095717: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.2279 seconds and 33.3 Mi memory
2023-07-05 13:25:41.095994: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:41.115507: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chrUn_KI270467v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:41.118066: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6019 seconds and 3.8 Mi memory
2023-07-05 13:25:41.126006: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chrUn_KI270467v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0097 seconds and 3.1 Mi memory
2023-07-05 13:25:41.126156: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chrUn_KI270467v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:41.131802: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chrUn_KI270467v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0052 seconds and 3.8 Mi memory
2023-07-05 13:25:41.136565: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.0923 seconds and 51.9 Mi memory
2023-07-05 13:25:41.136807: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:41.157122: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:41.168628: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:41.239240: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.2577 seconds and 54.7 Mi memory
2023-07-05 13:25:41.239495: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:41.246811: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4594 seconds and 46.5 Mi memory
2023-07-05 13:25:41.247230: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:41.318453: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6443 seconds and 3.8 Mi memory
2023-07-05 13:25:41.321062: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5809 seconds and 51.1 Mi memory
2023-07-05 13:25:41.321153: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8787 seconds and 3.7 Mi memory
2023-07-05 13:25:41.321424: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:41.400848: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:41.412012: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.5732 seconds and 30.0 Mi memory
2023-07-05 13:25:41.412252: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:41.500932: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9153 seconds and 3.7 Mi memory
2023-07-05 13:25:41.545757: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.1922 seconds and 38.5 Mi memory
2023-07-05 13:25:41.546131: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:41.576376: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:41.604657: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.0949 seconds and 30.3 Mi memory
2023-07-05 13:25:41.604897: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:41.639898: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.6427 seconds and 55.8 Mi memory
2023-07-05 13:25:41.640138: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:41.679598: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3651 seconds and 36.2 Mi memory
2023-07-05 13:25:41.679882: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:41.697059: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.1225 seconds and 79.2 Mi memory
2023-07-05 13:25:41.697277: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:41.711067: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:41.721914: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6249 seconds and 3.8 Mi memory
2023-07-05 13:25:41.749021: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8228 seconds and 3.7 Mi memory
2023-07-05 13:25:41.749730: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.728 seconds and 3.7 Mi memory
2023-07-05 13:25:41.771881: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:41.809310: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7862 seconds and 3.7 Mi memory
2023-07-05 13:25:41.855252: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:41.858039: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3866 seconds and 25.5 Mi memory
2023-07-05 13:25:41.858292: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:41.897886: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5755 seconds and 3.8 Mi memory
2023-07-05 13:25:41.915419: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8982 seconds and 3.8 Mi memory
2023-07-05 13:25:41.958027: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7096 seconds and 3.8 Mi memory
2023-07-05 13:25:41.968845: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:41.996958: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:42.032019: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:42.215931: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4566 seconds and 39.2 Mi memory
2023-07-05 13:25:42.216302: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:42.237703: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:42.271545: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:42.293657: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.0386 seconds and 39.2 Mi memory
2023-07-05 13:25:42.293903: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:42.295911: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4731 seconds and 35.1 Mi memory
2023-07-05 13:25:42.296184: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:42.347593: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1072 seconds and 3.8 Mi memory
2023-07-05 13:25:42.349660: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7441 seconds and 3.7 Mi memory
2023-07-05 13:25:42.365344: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9522 seconds and 3.7 Mi memory
2023-07-05 13:25:42.385431: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7045 seconds and 3.7 Mi memory
2023-07-05 13:25:42.451754: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3024 seconds and 44.8 Mi memory
2023-07-05 13:25:42.451984: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:42.498664: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.361 seconds and 3.7 Mi memory
2023-07-05 13:25:42.504824: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4934 seconds and 52.1 Mi memory
2023-07-05 13:25:42.505210: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:42.541045: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.2843 seconds and 56.2 Mi memory
2023-07-05 13:25:42.541438: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:42.559268: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6811 seconds and 46.2 Mi memory
2023-07-05 13:25:42.559533: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:42.598977: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.901 seconds and 3.7 Mi memory
2023-07-05 13:25:42.625790: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0788 seconds and 3.8 Mi memory
2023-07-05 13:25:42.638216: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5268 seconds and 71.5 Mi memory
2023-07-05 13:25:42.638486: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:42.641548: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:42.667136: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:42.675607: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8163 seconds and 3.8 Mi memory
2023-07-05 13:25:42.687134: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:42.688177: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.492 seconds and 57.6 Mi memory
2023-07-05 13:25:42.688439: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:42.706683: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4664 seconds and 38.9 Mi memory
2023-07-05 13:25:42.706984: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:42.724181: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0832 seconds and 3.7 Mi memory
2023-07-05 13:25:42.742149: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4373 seconds and 37.7 Mi memory
2023-07-05 13:25:42.742462: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:42.749419: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:42.773081: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.7593 seconds and 38.8 Mi memory
2023-07-05 13:25:42.773363: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:42.775276: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.445 seconds and 46.0 Mi memory
2023-07-05 13:25:42.775558: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:42.783076: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4856 seconds and 52.9 Mi memory
2023-07-05 13:25:42.783351: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:42.849530: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:42.887567: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6407 seconds and 56.7 Mi memory
2023-07-05 13:25:42.887843: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:42.896533: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5993 seconds and 3.8 Mi memory
2023-07-05 13:25:42.913724: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:42.919766: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8118 seconds and 57.0 Mi memory
2023-07-05 13:25:42.920028: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:42.924199: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:42.941679: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6486 seconds and 52.3 Mi memory
2023-07-05 13:25:42.941923: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:42.972091: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6575 seconds and 42.4 Mi memory
2023-07-05 13:25:42.972365: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:42.988065: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:43.001751: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7071 seconds and 3.7 Mi memory
2023-07-05 13:25:43.034095: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:43.058844: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.678 seconds and 31.0 Mi memory
2023-07-05 13:25:43.059137: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:43.059401: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6979 seconds and 25.3 Mi memory
2023-07-05 13:25:43.059695: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:43.075335: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5456 seconds and 54.5 Mi memory
2023-07-05 13:25:43.075615: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:43.078580: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8612 seconds and 3.8 Mi memory
2023-07-05 13:25:43.081068: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.3177 seconds and 91.3 Mi memory
2023-07-05 13:25:43.081329: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:43.083354: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.4814 seconds and 36.4 Mi memory
2023-07-05 13:25:43.083742: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:43.126154: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4614 seconds and 34.9 Mi memory
2023-07-05 13:25:43.126507: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:43.156908: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:43.231736: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chrUn_KI270467v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:43.235943: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7832 seconds and 3.8 Mi memory
2023-07-05 13:25:43.249294: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chrUn_KI270467v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0167 seconds and 3.0 Mi memory
2023-07-05 13:25:43.249442: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chrUn_KI270467v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:43.258996: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chrUn_KI270467v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0091 seconds and 3.8 Mi memory
2023-07-05 13:25:43.310680: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:43.313291: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:43.360033: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:43.383768: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.414 seconds and 55.4 Mi memory
2023-07-05 13:25:43.384157: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:43.410186: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8676 seconds and 3.6 Mi memory
2023-07-05 13:25:43.423842: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9176 seconds and 3.8 Mi memory
2023-07-05 13:25:43.487825: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7036 seconds and 3.9 Mi memory
2023-07-05 13:25:43.532982: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7566 seconds and 3.7 Mi memory
2023-07-05 13:25:43.565229: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7908 seconds and 3.8 Mi memory
2023-07-05 13:25:43.574128: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8306 seconds and 3.9 Mi memory
2023-07-05 13:25:43.600447: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9111 seconds and 3.8 Mi memory
2023-07-05 13:25:43.609011: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6879 seconds and 3.8 Mi memory
2023-07-05 13:25:43.618016: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.675 seconds and 3.7 Mi memory
2023-07-05 13:25:43.644887: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5601 seconds and 3.7 Mi memory
2023-07-05 13:25:43.649676: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.2051 seconds and 35.7 Mi memory
2023-07-05 13:25:43.649733: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:43.650055: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:43.658964: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6856 seconds and 3.8 Mi memory
2023-07-05 13:25:43.693085: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9849 seconds and 3.8 Mi memory
2023-07-05 13:25:43.711344: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.2844 seconds and 84.4 Mi memory
2023-07-05 13:25:43.711615: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:43.717059: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8283 seconds and 3.8 Mi memory
2023-07-05 13:25:43.735791: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:43.754470: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:43.763375: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6358 seconds and 3.9 Mi memory
2023-07-05 13:25:43.775283: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:43.779939: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0fb0/c3cd/tmpzo4mwdvs/HG02257.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1407 seconds and 3.7 Mi memory
2023-07-05 13:25:43.796856: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:43.797567: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7369 seconds and 3.7 Mi memory
2023-07-05 13:25:43.821888: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7617 seconds and 3.7 Mi memory
2023-07-05 13:25:43.937785: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:43.997638: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:43.997664: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:43.998126: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:44.038809: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:44.041540: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:44.061173: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.0716 seconds and 41.0 Mi memory
2023-07-05 13:25:44.061415: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:44.070814: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:44.075615: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:44.082753: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5019/8217/tmpnljaimcp/HG02818.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5224 seconds and 3.8 Mi memory
2023-07-05 13:25:44.100439: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4495 seconds and 3.7 Mi memory
2023-07-05 13:25:44.100631: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:44.142058: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:44.160909: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:44.175935: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:44.235145: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6474/bcdf/tmpgkev15ad/HG02630.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1588 seconds and 3.8 Mi memory
2023-07-05 13:25:44.423347: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6f62/59d0/tmpm9eqmk2p/HG03492.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0383 seconds and 3.8 Mi memory
2023-07-05 13:25:44.445760: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.5979 seconds and 33.6 Mi memory
2023-07-05 13:25:44.446162: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:44.499094: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.6958 seconds and 32.8 Mi memory
2023-07-05 13:25:44.499370: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:44.504505: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.8694 seconds and 54.7 Mi memory
2023-07-05 13:25:44.504754: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:44.525750: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4436 seconds and 3.8 Mi memory
2023-07-05 13:25:44.729085: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr22_KI270733v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:44.739397: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6773 seconds and 3.8 Mi memory
2023-07-05 13:25:44.749256: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/chr22_KI270733v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0192 seconds and 2.9 Mi memory
2023-07-05 13:25:44.749405: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr22_KI270733v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:44.754345: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b87/beab/tmpcrfdg84l/HG00621.2_chr22_KI270733v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0045 seconds and 3.8 Mi memory
2023-07-05 13:25:44.789259: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.1345 seconds and 84.6 Mi memory
2023-07-05 13:25:44.789624: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:44.828155: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.2763 seconds and 104.5 Mi memory
2023-07-05 13:25:44.828387: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:44.890665: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4413 seconds and 39.5 Mi memory
2023-07-05 13:25:44.890936: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:44.980539: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4803 seconds and 3.7 Mi memory
2023-07-05 13:25:44.999919: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.4206 seconds and 48.3 Mi memory
2023-07-05 13:25:45.000266: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:45.025807: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chrUn_KI270467v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:45.035873: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chrUn_KI270467v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0092 seconds and 3.1 Mi memory
2023-07-05 13:25:45.036019: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chrUn_KI270467v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:45.040347: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:45.041628: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chrUn_KI270467v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0052 seconds and 3.6 Mi memory
2023-07-05 13:25:45.072122: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.625 seconds and 3.7 Mi memory
2023-07-05 13:25:45.077751: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:45.125628: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:45.133013: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4205 seconds and 3.7 Mi memory
2023-07-05 13:25:45.298870: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr17.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.2805 seconds and 81.0 Mi memory
2023-07-05 13:25:45.299155: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr17.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:45.301296: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr22_KI270733v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:45.314326: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/chr22_KI270733v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0122 seconds and 3.1 Mi memory
2023-07-05 13:25:45.314467: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr22_KI270733v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:45.318566: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d86/62cb/tmpnmb1qdt9/HG00733.1_chr22_KI270733v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0037 seconds and 3.7 Mi memory
2023-07-05 13:25:45.347675: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8419 seconds and 3.8 Mi memory
2023-07-05 13:25:45.526040: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:45.527775: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.737 seconds and 3.8 Mi memory
2023-07-05 13:25:45.561995: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.4742 seconds and 36.9 Mi memory
2023-07-05 13:25:45.562252: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:45.611248: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.8477 seconds and 30.0 Mi memory
2023-07-05 13:25:45.611479: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:45.624866: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.3422 seconds and 54.4 Mi memory
2023-07-05 13:25:45.625268: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:45.713739: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.2813 seconds and 85.9 Mi memory
2023-07-05 13:25:45.713977: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:45.715729: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.2156 seconds and 78.4 Mi memory
2023-07-05 13:25:45.716021: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:45.736300: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:45.785237: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.9818 seconds and 84.9 Mi memory
2023-07-05 13:25:45.785606: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:45.875893: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0468 seconds and 3.7 Mi memory
2023-07-05 13:25:45.905901: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr17.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6059 seconds and 3.7 Mi memory
2023-07-05 13:25:45.939953: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.0248 seconds and 52.4 Mi memory
2023-07-05 13:25:45.940189: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:45.957264: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4337 seconds and 39.5 Mi memory
2023-07-05 13:25:45.957678: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:45.990088: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270522v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:45.996177: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270522v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0053 seconds and 3.1 Mi memory
2023-07-05 13:25:45.996321: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270522v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:46.001234: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270522v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0045 seconds and 3.7 Mi memory
2023-07-05 13:25:46.041419: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270366v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:46.046237: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270366v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0043 seconds and 3.0 Mi memory
2023-07-05 13:25:46.046366: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270366v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:46.050593: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270366v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0038 seconds and 3.8 Mi memory
2023-07-05 13:25:46.087384: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5243 seconds and 3.7 Mi memory
2023-07-05 13:25:46.091931: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270378v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:46.096651: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270378v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0042 seconds and 3.1 Mi memory
2023-07-05 13:25:46.096768: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270378v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:46.101126: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270378v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0039 seconds and 3.8 Mi memory
2023-07-05 13:25:46.103404: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3df4/af14/tmp22fgj6ni/NA21309.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2117 seconds and 3.8 Mi memory
2023-07-05 13:25:46.133877: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr1_KI270714v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:46.140051: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr1_KI270714v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0057 seconds and 2.9 Mi memory
2023-07-05 13:25:46.140170: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr1_KI270714v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:46.144491: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr1_KI270714v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0039 seconds and 3.8 Mi memory
2023-07-05 13:25:46.160230: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:46.163361: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:46.175543: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr11_KI270721v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:46.188756: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr11_KI270721v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0127 seconds and 3.0 Mi memory
2023-07-05 13:25:46.188880: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr11_KI270721v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:46.203723: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr11_KI270721v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0143 seconds and 3.7 Mi memory
2023-07-05 13:25:46.213615: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr17_KI270729v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:46.213705: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.956 seconds and 40.4 Mi memory
2023-07-05 13:25:46.213948: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:46.230180: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr17_KI270729v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.016 seconds and 3.0 Mi memory
2023-07-05 13:25:46.230355: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr17_KI270729v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:46.237454: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr17_KI270729v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0065 seconds and 3.7 Mi memory
2023-07-05 13:25:46.242139: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2409 seconds and 3.7 Mi memory
2023-07-05 13:25:46.277081: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270396v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:46.282117: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270396v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0045 seconds and 3.0 Mi memory
2023-07-05 13:25:46.282242: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270396v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:46.286987: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270396v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0043 seconds and 3.7 Mi memory
2023-07-05 13:25:46.333661: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr18.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:46.400130: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.1553 seconds and 88.2 Mi memory
2023-07-05 13:25:46.400363: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:46.440987: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.4078 seconds and 30.7 Mi memory
2023-07-05 13:25:46.441222: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:46.447835: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.5915 seconds and 63.2 Mi memory
2023-07-05 13:25:46.448178: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:46.538565: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:46.549030: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8342 seconds and 3.8 Mi memory
2023-07-05 13:25:46.592936: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.5947 seconds and 27.6 Mi memory
2023-07-05 13:25:46.593224: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:46.603659: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.317 seconds and 154.8 Mi memory
2023-07-05 13:25:46.604051: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:46.666487: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0542 seconds and 3.8 Mi memory
2023-07-05 13:25:46.666729: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7257 seconds and 3.7 Mi memory
2023-07-05 13:25:46.705671: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9192 seconds and 3.8 Mi memory
2023-07-05 13:25:46.709581: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2.fa --region-file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4542 seconds and 51.7 Mi memory
2023-07-05 13:25:46.709978: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:46.874133: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:46.919273: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.094 seconds and 31.2 Mi memory
2023-07-05 13:25:46.919515: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:47.054309: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4602 seconds and 3.7 Mi memory
2023-07-05 13:25:47.096258: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6543 seconds and 3.7 Mi memory
2023-07-05 13:25:47.112669: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:47.125266: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6761 seconds and 3.8 Mi memory
2023-07-05 13:25:47.125302: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:47.126683: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4992/0b06/tmp56j1n77h/NA18906.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5005 seconds and 3.7 Mi memory
2023-07-05 13:25:47.129113: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9144 seconds and 3.8 Mi memory
2023-07-05 13:25:47.133516: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:47.157824: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:47.163525: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b437/ce25/tmp47b_w5ef/HG02717.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4467 seconds and 3.8 Mi memory
2023-07-05 13:25:47.164626: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:47.300905: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:47.390731: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:47.393251: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/afe9/87cc/tmpx3q4vtca/NA20129.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4347 seconds and 3.8 Mi memory
2023-07-05 13:25:47.655297: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7344 seconds and 3.8 Mi memory
2023-07-05 13:25:47.657093: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.0394 seconds and 41.3 Mi memory
2023-07-05 13:25:47.657320: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:47.669665: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.3086 seconds and 31.8 Mi memory
2023-07-05 13:25:47.669894: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:47.700921: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2311/3c78/tmpxho7qau5/CHM13_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.096 seconds and 3.7 Mi memory
2023-07-05 13:25:47.729361: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4566 seconds and 38.0 Mi memory
2023-07-05 13:25:47.729708: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:47.957374: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.7876 seconds and 52.6 Mi memory
2023-07-05 13:25:47.957646: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:48.009961: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:48.043390: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.3926 seconds and 31.0 Mi memory
2023-07-05 13:25:48.043665: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:48.073833: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3233 seconds and 40.5 Mi memory
2023-07-05 13:25:48.074108: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:48.152927: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.4161 seconds and 33.8 Mi memory
2023-07-05 13:25:48.153206: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:48.157338: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f9eb/d088/tmpfadqu1nb/HG02886.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4465 seconds and 3.8 Mi memory
2023-07-05 13:25:48.159766: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4891 seconds and 3.8 Mi memory
2023-07-05 13:25:48.237107: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:48.286807: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.348 seconds and 31.7 Mi memory
2023-07-05 13:25:48.287103: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:48.348207: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.9465 seconds and 55.7 Mi memory
2023-07-05 13:25:48.348449: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:48.387537: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7294 seconds and 3.8 Mi memory
2023-07-05 13:25:48.421336: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.2951 seconds and 98.2 Mi memory
2023-07-05 13:25:48.421583: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:48.585454: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chrUn_KI270467v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:48.590299: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8595 seconds and 3.7 Mi memory
2023-07-05 13:25:48.591717: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6023 seconds and 31.0 Mi memory
2023-07-05 13:25:48.591996: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:48.599864: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chrUn_KI270467v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0137 seconds and 3.0 Mi memory
2023-07-05 13:25:48.600013: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chrUn_KI270467v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:48.606662: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chrUn_KI270467v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0062 seconds and 3.8 Mi memory
2023-07-05 13:25:48.635007: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:48.649703: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6051 seconds and 3.8 Mi memory
2023-07-05 13:25:48.703690: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:48.712371: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3979 seconds and 48.2 Mi memory
2023-07-05 13:25:48.712625: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:48.716567: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:48.749330: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5911 seconds and 60.6 Mi memory
2023-07-05 13:25:48.749717: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:48.752388: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6772 seconds and 3.7 Mi memory
2023-07-05 13:25:48.784820: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6307 seconds and 3.7 Mi memory
2023-07-05 13:25:48.824671: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.4236 seconds and 3.8 Mi memory
2023-07-05 13:25:48.861849: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:48.879143: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:48.971019: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0125 seconds and 3.8 Mi memory
2023-07-05 13:25:48.973195: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6852 seconds and 3.8 Mi memory
2023-07-05 13:25:48.992283: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:49.043719: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:49.114329: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7649 seconds and 3.8 Mi memory
2023-07-05 13:25:49.124358: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3687 seconds and 50.5 Mi memory
2023-07-05 13:25:49.124626: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:49.129670: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:49.153650: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5606 seconds and 3.8 Mi memory
2023-07-05 13:25:49.188859: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3909 seconds and 40.2 Mi memory
2023-07-05 13:25:49.189120: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:49.197288: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.4244 seconds and 55.3 Mi memory
2023-07-05 13:25:49.197504: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:49.229300: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.1894 seconds and 54.4 Mi memory
2023-07-05 13:25:49.229561: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:49.295619: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:49.316640: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5659 seconds and 3.7 Mi memory
2023-07-05 13:25:49.321360: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3221 seconds and 24.5 Mi memory
2023-07-05 13:25:49.321615: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:49.375676: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3769 seconds and 54.4 Mi memory
2023-07-05 13:25:49.375937: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:49.399575: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.5487 seconds and 66.6 Mi memory
2023-07-05 13:25:49.399810: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:49.409471: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3666 seconds and 54.5 Mi memory
2023-07-05 13:25:49.409744: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:49.423130: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:49.439545: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.3671 seconds and 42.0 Mi memory
2023-07-05 13:25:49.439818: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:49.448197: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:49.505611: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.792 seconds and 3.7 Mi memory
2023-07-05 13:25:49.530585: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4537 seconds and 45.6 Mi memory
2023-07-05 13:25:49.530862: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:49.544874: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.4018 seconds and 23.5 Mi memory
2023-07-05 13:25:49.545075: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:49.551258: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5526 seconds and 19.9 Mi memory
2023-07-05 13:25:49.551543: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:49.594774: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:49.642455: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5405 seconds and 52.6 Mi memory
2023-07-05 13:25:49.642738: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:49.730813: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.5685 seconds and 35.9 Mi memory
2023-07-05 13:25:49.731263: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:49.991525: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7611 seconds and 3.7 Mi memory
2023-07-05 13:25:50.005685: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8157 seconds and 3.7 Mi memory
2023-07-05 13:25:50.018804: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.642 seconds and 3.8 Mi memory
2023-07-05 13:25:50.037621: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7151 seconds and 3.8 Mi memory
2023-07-05 13:25:50.059025: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9333 seconds and 3.7 Mi memory
2023-07-05 13:25:50.129436: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6888 seconds and 3.8 Mi memory
2023-07-05 13:25:50.149949: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:50.162851: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:50.186753: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:50.195645: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7849 seconds and 3.7 Mi memory
2023-07-05 13:25:50.221548: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:50.236430: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:50.241476: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6957 seconds and 3.6 Mi memory
2023-07-05 13:25:50.244719: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0463 seconds and 3.8 Mi memory
2023-07-05 13:25:50.268308: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:50.276400: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7445 seconds and 3.8 Mi memory
2023-07-05 13:25:50.282073: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:50.309009: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9084 seconds and 3.8 Mi memory
2023-07-05 13:25:50.327610: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.775 seconds and 3.8 Mi memory
2023-07-05 13:25:50.358896: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7151 seconds and 3.7 Mi memory
2023-07-05 13:25:50.360082: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:50.437823: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7054 seconds and 3.8 Mi memory
2023-07-05 13:25:50.449635: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:50.496780: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:50.523394: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:50.550664: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chrUn_KI270467v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:50.561403: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chrUn_KI270467v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0094 seconds and 3.0 Mi memory
2023-07-05 13:25:50.561568: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chrUn_KI270467v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:50.568969: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chrUn_KI270467v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0069 seconds and 3.8 Mi memory
2023-07-05 13:25:50.587146: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:50.612897: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:50.666130: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:50.744808: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.3223 seconds and 3.7 Mi memory
2023-07-05 13:25:50.759137: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.9826 seconds and 28.4 Mi memory
2023-07-05 13:25:50.759411: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:50.980680: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:51.096646: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.9199 seconds and 39.5 Mi memory
2023-07-05 13:25:51.096904: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:51.100187: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.5787 seconds and 102.9 Mi memory
2023-07-05 13:25:51.100431: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:51.340119: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.7698 seconds and 79.7 Mi memory
2023-07-05 13:25:51.340357: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:51.533669: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7734 seconds and 3.8 Mi memory
2023-07-05 13:25:51.622984: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr18.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.2887 seconds and 78.2 Mi memory
2023-07-05 13:25:51.623231: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr18.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:51.644896: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:51.781272: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6836 seconds and 3.8 Mi memory
2023-07-05 13:25:51.955321: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:52.025544: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.9843 seconds and 39.4 Mi memory
2023-07-05 13:25:52.025940: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:52.094323: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.9676 seconds and 74.9 Mi memory
2023-07-05 13:25:52.094732: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:52.389312: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr18.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7652 seconds and 3.8 Mi memory
2023-07-05 13:25:52.458665: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270393v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:52.464612: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270393v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0051 seconds and 3.0 Mi memory
2023-07-05 13:25:52.464759: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270393v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:52.469208: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270393v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.004 seconds and 3.8 Mi memory
2023-07-05 13:25:52.488576: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr17_KI270730v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:52.497556: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr17_KI270730v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0085 seconds and 3.1 Mi memory
2023-07-05 13:25:52.497689: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr17_KI270730v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:52.502371: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr17_KI270730v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0042 seconds and 3.7 Mi memory
2023-07-05 13:25:52.524221: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr20.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:52.665659: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.8994 seconds and 133.6 Mi memory
2023-07-05 13:25:52.665909: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:52.710159: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6833 seconds and 3.7 Mi memory
2023-07-05 13:25:52.898367: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.9046 seconds and 13.5 Mi memory
2023-07-05 13:25:52.898723: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:52.978622: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:53.023250: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.8621 seconds and 40.5 Mi memory
2023-07-05 13:25:53.023523: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:53.066602: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9709 seconds and 3.6 Mi memory
2023-07-05 13:25:53.221239: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1201 seconds and 3.7 Mi memory
2023-07-05 13:25:53.266491: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.5616 seconds and 32.8 Mi memory
2023-07-05 13:25:53.266768: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:53.279423: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.7392 seconds and 53.7 Mi memory
2023-07-05 13:25:53.279808: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:53.289397: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:53.378856: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.4987 seconds and 32.7 Mi memory
2023-07-05 13:25:53.379178: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:53.385184: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:53.400240: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5006 seconds and 3.7 Mi memory
2023-07-05 13:25:53.458879: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:53.670325: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.3292 seconds and 3.8 Mi memory
2023-07-05 13:25:53.745786: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7214 seconds and 3.7 Mi memory
2023-07-05 13:25:53.753292: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4854 seconds and 3.8 Mi memory
2023-07-05 13:25:53.800469: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:53.846192: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:53.863898: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.268 seconds and 35.6 Mi memory
2023-07-05 13:25:53.864137: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:53.961686: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.7961 seconds and 37.7 Mi memory
2023-07-05 13:25:53.961916: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:54.010688: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.7141 seconds and 37.6 Mi memory
2023-07-05 13:25:54.010970: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:54.032300: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:54.036241: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6562 seconds and 3.8 Mi memory
2023-07-05 13:25:54.088338: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:54.138223: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.689 seconds and 59.8 Mi memory
2023-07-05 13:25:54.138613: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:54.165868: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8851 seconds and 3.8 Mi memory
2023-07-05 13:25:54.324256: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:54.399264: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.2648 seconds and 34.2 Mi memory
2023-07-05 13:25:54.399545: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:54.475574: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6105 seconds and 3.7 Mi memory
2023-07-05 13:25:54.482746: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.3189 seconds and 32.2 Mi memory
2023-07-05 13:25:54.483038: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:54.499998: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.198 seconds and 97.8 Mi memory
2023-07-05 13:25:54.500251: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:54.529008: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:54.534565: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.3835 seconds and 35.8 Mi memory
2023-07-05 13:25:54.534839: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:54.557973: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8913 seconds and 3.7 Mi memory
2023-07-05 13:25:54.620827: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4811 seconds and 3.8 Mi memory
2023-07-05 13:25:54.643627: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.4062 seconds and 35.3 Mi memory
2023-07-05 13:25:54.643896: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:54.652359: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6404 seconds and 3.7 Mi memory
2023-07-05 13:25:54.663981: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7011 seconds and 3.8 Mi memory
2023-07-05 13:25:54.706577: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.4835 seconds and 35.8 Mi memory
2023-07-05 13:25:54.706843: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:54.742292: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.5543 seconds and 28.9 Mi memory
2023-07-05 13:25:54.742591: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:54.742499: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:54.744961: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:54.747700: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:54.751659: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.3012 seconds and 34.3 Mi memory
2023-07-05 13:25:54.751934: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:54.781542: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.4203 seconds and 44.1 Mi memory
2023-07-05 13:25:54.781782: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:54.866513: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.5835 seconds and 64.2 Mi memory
2023-07-05 13:25:54.866775: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:54.875439: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:54.940256: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.7023 seconds and 84.9 Mi memory
2023-07-05 13:25:54.940494: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:54.973278: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.7039 seconds and 64.0 Mi memory
2023-07-05 13:25:54.973544: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:54.981629: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.9932 seconds and 25.8 Mi memory
2023-07-05 13:25:54.981857: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:55.072764: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.5482 seconds and 33.6 Mi memory
2023-07-05 13:25:55.073169: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:55.179142: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.6808 seconds and 49.6 Mi memory
2023-07-05 13:25:55.179426: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:55.197148: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.713 seconds and 3.7 Mi memory
2023-07-05 13:25:55.221514: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.6332 seconds and 32.5 Mi memory
2023-07-05 13:25:55.221771: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:55.249723: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7136 seconds and 3.7 Mi memory
2023-07-05 13:25:55.249963: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:55.293499: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7923 seconds and 3.8 Mi memory
2023-07-05 13:25:55.302436: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:55.303367: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5506 seconds and 3.7 Mi memory
2023-07-05 13:25:55.319709: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6119 seconds and 3.8 Mi memory
2023-07-05 13:25:55.366110: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6226 seconds and 3.7 Mi memory
2023-07-05 13:25:55.380240: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:55.417821: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7731 seconds and 3.7 Mi memory
2023-07-05 13:25:55.421460: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:55.426054: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5582 seconds and 3.7 Mi memory
2023-07-05 13:25:55.452256: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:55.476451: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:55.499260: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7157 seconds and 3.7 Mi memory
2023-07-05 13:25:55.506613: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:55.526833: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1265 seconds and 3.7 Mi memory
2023-07-05 13:25:55.581689: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5989 seconds and 3.9 Mi memory
2023-07-05 13:25:55.599732: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:55.603569: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.7407 seconds and 56.2 Mi memory
2023-07-05 13:25:55.603828: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:55.615376: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:55.678446: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6042 seconds and 3.7 Mi memory
2023-07-05 13:25:55.691545: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:55.695968: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7214 seconds and 3.8 Mi memory
2023-07-05 13:25:55.700208: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7588 seconds and 3.8 Mi memory
2023-07-05 13:25:55.749223: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:55.768670: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:55.793461: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5706 seconds and 3.7 Mi memory
2023-07-05 13:25:55.794129: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.0762 seconds and 29.7 Mi memory
2023-07-05 13:25:55.794533: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:55.864694: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6841 seconds and 3.7 Mi memory
2023-07-05 13:25:55.874218: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:55.882509: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:55.934690: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:55.938630: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:56.031309: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.207 seconds and 105.2 Mi memory
2023-07-05 13:25:56.031656: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:56.109295: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.0645 seconds and 44.3 Mi memory
2023-07-05 13:25:56.109680: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:56.536831: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9321 seconds and 3.7 Mi memory
2023-07-05 13:25:56.669305: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr20.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1444 seconds and 63.2 Mi memory
2023-07-05 13:25:56.669687: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr20.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:56.690437: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:56.723239: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9276 seconds and 3.7 Mi memory
2023-07-05 13:25:56.921965: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8113 seconds and 3.8 Mi memory
2023-07-05 13:25:56.963794: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:57.137593: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:57.210911: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.8245 seconds and 19.4 Mi memory
2023-07-05 13:25:57.211344: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:57.277279: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr20.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6066 seconds and 3.7 Mi memory
2023-07-05 13:25:57.328617: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr13.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:57.642090: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.8404 seconds and 33.3 Mi memory
2023-07-05 13:25:57.642445: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:57.651105: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4388 seconds and 3.7 Mi memory
2023-07-05 13:25:57.700800: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:57.750690: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7179 seconds and 3.8 Mi memory
2023-07-05 13:25:57.870452: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:58.070025: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.9123 seconds and 108.0 Mi memory
2023-07-05 13:25:58.070264: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:58.240195: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5966 seconds and 3.7 Mi memory
2023-07-05 13:25:58.298116: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:58.579409: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.8307 seconds and 31.8 Mi memory
2023-07-05 13:25:58.579769: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:58.981410: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.4039 seconds and 121.2 Mi memory
2023-07-05 13:25:58.981793: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:59.012594: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.0427 seconds and 79.2 Mi memory
2023-07-05 13:25:59.012956: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:59.178566: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.4666 seconds and 98.3 Mi memory
2023-07-05 13:25:59.178805: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:59.202764: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6221 seconds and 3.7 Mi memory
2023-07-05 13:25:59.285971: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:25:59.286568: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.0479 seconds and 53.6 Mi memory
2023-07-05 13:25:59.286841: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:59.665908: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 16.9766 seconds and 88.5 Mi memory
2023-07-05 13:25:59.666158: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:59.920825: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.0458 seconds and 62.5 Mi memory
2023-07-05 13:25:59.921090: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:25:59.971994: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.0573 seconds and 66.4 Mi memory
2023-07-05 13:25:59.972240: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:00.023551: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.3554 seconds and 112.2 Mi memory
2023-07-05 13:26:00.023811: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:00.053026: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.4104 seconds and 52.5 Mi memory
2023-07-05 13:26:00.053265: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:00.214407: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1434 seconds and 3.8 Mi memory
2023-07-05 13:26:00.322275: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.3969 seconds and 102.9 Mi memory
2023-07-05 13:26:00.322617: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:00.370169: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:00.544019: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.509 seconds and 89.3 Mi memory
2023-07-05 13:26:00.544264: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:00.650825: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.3395 seconds and 76.4 Mi memory
2023-07-05 13:26:00.651087: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:00.979486: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9968 seconds and 3.6 Mi memory
2023-07-05 13:26:01.033129: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.1856 seconds and 72.5 Mi memory
2023-07-05 13:26:01.033415: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:01.103611: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:01.106405: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.0171 seconds and 43.1 Mi memory
2023-07-05 13:26:01.106675: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:01.227814: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9401 seconds and 3.7 Mi memory
2023-07-05 13:26:01.387747: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:01.574810: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.561 seconds and 3.7 Mi memory
2023-07-05 13:26:01.606834: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6849 seconds and 3.7 Mi memory
2023-07-05 13:26:01.738676: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:01.767565: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.588 seconds and 3.7 Mi memory
2023-07-05 13:26:01.793282: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.759 seconds and 3.7 Mi memory
2023-07-05 13:26:01.812482: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.0665 seconds and 70.9 Mi memory
2023-07-05 13:26:01.812772: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:01.813013: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.283 seconds and 45.1 Mi memory
2023-07-05 13:26:01.813301: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:01.847440: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1805 seconds and 3.7 Mi memory
2023-07-05 13:26:01.933324: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr14_GL000225v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:01.949272: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr14_GL000225v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.015 seconds and 3.0 Mi memory
2023-07-05 13:26:01.949431: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr14_GL000225v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:01.954737: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr14_GL000225v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0049 seconds and 3.6 Mi memory
2023-07-05 13:26:01.968677: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:02.023938: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9994 seconds and 3.7 Mi memory
2023-07-05 13:26:02.035041: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9273 seconds and 3.7 Mi memory
2023-07-05 13:26:02.054208: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:02.065514: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0925 seconds and 3.8 Mi memory
2023-07-05 13:26:02.082621: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr14_KI270725v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:02.095976: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr14_KI270725v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0125 seconds and 3.0 Mi memory
2023-07-05 13:26:02.096109: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr14_KI270725v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:02.101578: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:02.104402: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr14_KI270725v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0079 seconds and 3.7 Mi memory
2023-07-05 13:26:02.107657: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.364 seconds and 53.9 Mi memory
2023-07-05 13:26:02.107940: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:02.111194: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.2395 seconds and 39.2 Mi memory
2023-07-05 13:26:02.111536: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:02.188016: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:02.227548: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.7677 seconds and 45.4 Mi memory
2023-07-05 13:26:02.227783: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:02.267404: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:02.274934: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2207 seconds and 3.7 Mi memory
2023-07-05 13:26:02.279280: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:02.288110: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:02.298544: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.0475 seconds and 44.2 Mi memory
2023-07-05 13:26:02.298962: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:02.343258: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.962 seconds and 40.7 Mi memory
2023-07-05 13:26:02.343524: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:02.364749: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8198 seconds and 3.6 Mi memory
2023-07-05 13:26:02.366413: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.0629 seconds and 42.9 Mi memory
2023-07-05 13:26:02.366821: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:02.403871: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.9264 seconds and 39.8 Mi memory
2023-07-05 13:26:02.404155: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:02.415573: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:02.498529: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:02.565245: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7516 seconds and 3.7 Mi memory
2023-07-05 13:26:02.643984: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.1362 seconds and 65.0 Mi memory
2023-07-05 13:26:02.644275: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:02.657118: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.2038 seconds and 42.5 Mi memory
2023-07-05 13:26:02.657527: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:02.657949: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.2347 seconds and 27.9 Mi memory
2023-07-05 13:26:02.658335: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:02.736611: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.8613 seconds and 33.6 Mi memory
2023-07-05 13:26:02.736986: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:02.747982: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.1471 seconds and 31.0 Mi memory
2023-07-05 13:26:02.748284: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:02.758878: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.107 seconds and 3.8 Mi memory
2023-07-05 13:26:02.764968: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.8292 seconds and 29.4 Mi memory
2023-07-05 13:26:02.765247: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:02.775566: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.0253 seconds and 41.0 Mi memory
2023-07-05 13:26:02.775843: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:02.780847: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6683 seconds and 3.7 Mi memory
2023-07-05 13:26:02.812773: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.7344 seconds and 73.5 Mi memory
2023-07-05 13:26:02.813151: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:02.852271: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.5288 seconds and 3.7 Mi memory
2023-07-05 13:26:02.853427: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.3262 seconds and 75.6 Mi memory
2023-07-05 13:26:02.853688: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:02.885208: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.1155 seconds and 56.3 Mi memory
2023-07-05 13:26:02.885493: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:02.888065: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:02.890499: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:02.912880: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:03.014863: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:03.036453: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2221 seconds and 3.8 Mi memory
2023-07-05 13:26:03.115407: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0066 seconds and 3.7 Mi memory
2023-07-05 13:26:03.171007: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.4329 seconds and 108.1 Mi memory
2023-07-05 13:26:03.171250: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:03.227125: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9985 seconds and 3.6 Mi memory
2023-07-05 13:26:03.296604: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9287 seconds and 3.7 Mi memory
2023-07-05 13:26:03.348768: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:03.356093: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0116 seconds and 3.8 Mi memory
2023-07-05 13:26:03.365876: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0657 seconds and 3.8 Mi memory
2023-07-05 13:26:03.372615: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9676 seconds and 3.7 Mi memory
2023-07-05 13:26:03.443483: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:03.450743: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7913 seconds and 3.7 Mi memory
2023-07-05 13:26:03.544118: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr17_GL000205v2_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:03.555730: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr17_GL000205v2_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0107 seconds and 3.1 Mi memory
2023-07-05 13:26:03.555875: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr17_GL000205v2_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:03.561842: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr17_GL000205v2_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0055 seconds and 3.8 Mi memory
2023-07-05 13:26:03.563664: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:03.574810: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8366 seconds and 3.7 Mi memory
2023-07-05 13:26:03.595009: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chrUn_KI270467v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:03.609862: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chrUn_KI270467v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0138 seconds and 3.1 Mi memory
2023-07-05 13:26:03.610024: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chrUn_KI270467v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:03.620772: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chrUn_KI270467v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0102 seconds and 3.8 Mi memory
2023-07-05 13:26:03.649196: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8724 seconds and 3.6 Mi memory
2023-07-05 13:26:03.652238: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:03.655571: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:03.661429: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:03.668250: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:03.707204: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0621 seconds and 3.7 Mi memory
2023-07-05 13:26:03.717709: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:03.730476: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9813 seconds and 3.8 Mi memory
2023-07-05 13:26:03.808871: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0428 seconds and 3.7 Mi memory
2023-07-05 13:26:03.847901: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1894 seconds and 3.7 Mi memory
2023-07-05 13:26:03.866316: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:03.874302: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2072 seconds and 60.7 Mi memory
2023-07-05 13:26:03.874556: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:03.910010: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0236 seconds and 3.8 Mi memory
2023-07-05 13:26:04.009842: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:04.091428: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:04.146459: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:04.170207: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chrUn_KI270467v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:04.185063: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chrUn_KI270467v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0138 seconds and 3.1 Mi memory
2023-07-05 13:26:04.185218: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chrUn_KI270467v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:04.191549: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chrUn_KI270467v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0058 seconds and 3.7 Mi memory
2023-07-05 13:26:04.191422: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:04.241032: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:04.270473: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:04.375155: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr13.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.0456 seconds and 110.7 Mi memory
2023-07-05 13:26:04.375427: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr13.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:04.409867: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 18.2452 seconds and 114.9 Mi memory
2023-07-05 13:26:04.410232: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:04.632056: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.5182 seconds and 97.2 Mi memory
2023-07-05 13:26:04.632330: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:04.647336: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.2762 seconds and 17.8 Mi memory
2023-07-05 13:26:04.647576: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:04.647543: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.2557 seconds and 108.4 Mi memory
2023-07-05 13:26:04.647786: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:04.716075: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.5897 seconds and 73.3 Mi memory
2023-07-05 13:26:04.716320: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:04.812600: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.6536 seconds and 137.1 Mi memory
2023-07-05 13:26:04.812838: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:04.957133: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.143 seconds and 3.6 Mi memory
2023-07-05 13:26:04.996870: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1422 seconds and 3.8 Mi memory
2023-07-05 13:26:05.035607: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.3433 seconds and 63.2 Mi memory
2023-07-05 13:26:05.035846: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:05.183289: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.0788 seconds and 31.7 Mi memory
2023-07-05 13:26:05.183538: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:05.293624: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:05.301683: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6532 seconds and 3.6 Mi memory
2023-07-05 13:26:05.322917: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:05.371097: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:05.392266: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2201 seconds and 3.8 Mi memory
2023-07-05 13:26:05.521703: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6464 seconds and 3.8 Mi memory
2023-07-05 13:26:05.523178: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:05.597752: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr13.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2213 seconds and 3.7 Mi memory
2023-07-05 13:26:05.598660: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.2098 seconds and 31.7 Mi memory
2023-07-05 13:26:05.598942: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:05.738089: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.7272 seconds and 73.5 Mi memory
2023-07-05 13:26:05.738338: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:05.791047: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.0512 seconds and 21.8 Mi memory
2023-07-05 13:26:05.791295: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:05.845667: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6613 seconds and 3.7 Mi memory
2023-07-05 13:26:05.930841: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr17_GL000205v2_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:05.952898: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr17_GL000205v2_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0208 seconds and 3.2 Mi memory
2023-07-05 13:26:05.953089: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr17_GL000205v2_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:05.960163: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr17_GL000205v2_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0065 seconds and 3.8 Mi memory
2023-07-05 13:26:05.968692: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:05.999087: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270312v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:06.005229: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270312v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0055 seconds and 3.1 Mi memory
2023-07-05 13:26:06.005371: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270312v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:06.010779: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270312v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0049 seconds and 3.8 Mi memory
2023-07-05 13:26:06.058539: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270757v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:06.066541: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270757v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0073 seconds and 3.1 Mi memory
2023-07-05 13:26:06.066669: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270757v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:06.071707: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270757v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0046 seconds and 3.7 Mi memory
2023-07-05 13:26:06.116984: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr4_GL000008v2_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:06.137094: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr4_GL000008v2_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0196 seconds and 3.0 Mi memory
2023-07-05 13:26:06.137232: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr4_GL000008v2_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:06.144356: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr4_GL000008v2_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0066 seconds and 3.7 Mi memory
2023-07-05 13:26:06.199418: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5996 seconds and 3.7 Mi memory
2023-07-05 13:26:06.205002: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270387v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:06.211172: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270387v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0054 seconds and 3.0 Mi memory
2023-07-05 13:26:06.211319: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270387v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:06.211915: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.0811 seconds and 76.6 Mi memory
2023-07-05 13:26:06.212195: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:06.216570: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270387v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0047 seconds and 3.8 Mi memory
2023-07-05 13:26:06.242098: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2054 seconds and 3.6 Mi memory
2023-07-05 13:26:06.255509: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270302v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:06.261090: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270302v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0051 seconds and 3.0 Mi memory
2023-07-05 13:26:06.261211: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270302v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:06.265570: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270302v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0039 seconds and 3.8 Mi memory
2023-07-05 13:26:06.298170: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.3286 seconds and 35.2 Mi memory
2023-07-05 13:26:06.298503: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:06.313537: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270429v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:06.315754: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:06.327661: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270429v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0135 seconds and 3.1 Mi memory
2023-07-05 13:26:06.327876: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270429v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:06.333256: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270429v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0048 seconds and 3.7 Mi memory
2023-07-05 13:26:06.375969: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270467v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:06.380109: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.2773 seconds and 28.9 Mi memory
2023-07-05 13:26:06.380713: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:06.381306: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270467v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0048 seconds and 3.0 Mi memory
2023-07-05 13:26:06.381439: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270467v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:06.386603: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270467v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0047 seconds and 3.8 Mi memory
2023-07-05 13:26:06.428907: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:06.447340: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6552 seconds and 3.6 Mi memory
2023-07-05 13:26:06.468520: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.833 seconds and 48.9 Mi memory
2023-07-05 13:26:06.468737: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:06.481296: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.2923 seconds and 29.6 Mi memory
2023-07-05 13:26:06.481534: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:06.510322: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:06.521340: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8882 seconds and 3.7 Mi memory
2023-07-05 13:26:06.547584: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:06.580827: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:06.637170: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.3479 seconds and 31.2 Mi memory
2023-07-05 13:26:06.637413: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:06.766951: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.3557 seconds and 3.7 Mi memory
2023-07-05 13:26:06.813920: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.3975 seconds and 16.0 Mi memory
2023-07-05 13:26:06.814159: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:06.823417: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:06.857007: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5576 seconds and 3.6 Mi memory
2023-07-05 13:26:06.947204: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:06.957691: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:06.962152: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5803 seconds and 3.7 Mi memory
2023-07-05 13:26:06.974813: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.4754 seconds and 19.1 Mi memory
2023-07-05 13:26:06.975204: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:07.037076: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:07.099478: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.617 seconds and 3.9 Mi memory
2023-07-05 13:26:07.107534: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4692 seconds and 3.7 Mi memory
2023-07-05 13:26:07.111581: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1976 seconds and 27.1 Mi memory
2023-07-05 13:26:07.111806: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:07.205407: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:07.210449: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:07.260412: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.5434 seconds and 3.7 Mi memory
2023-07-05 13:26:07.282002: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.4684 seconds and 3.7 Mi memory
2023-07-05 13:26:07.369603: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.721 seconds and 3.8 Mi memory
2023-07-05 13:26:07.375749: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.9515 seconds and 108.3 Mi memory
2023-07-05 13:26:07.376334: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:07.377536: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.0786 seconds and 66.6 Mi memory
2023-07-05 13:26:07.377888: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:07.409200: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:07.436440: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:07.451540: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7499 seconds and 72.0 Mi memory
2023-07-05 13:26:07.451899: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:07.468473: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6535 seconds and 3.6 Mi memory
2023-07-05 13:26:07.481960: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.4659 seconds and 21.7 Mi memory
2023-07-05 13:26:07.482206: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:07.502087: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.526 seconds and 3.7 Mi memory
2023-07-05 13:26:07.579626: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:07.596687: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:07.617209: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:07.686598: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5741 seconds and 3.7 Mi memory
2023-07-05 13:26:07.736762: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:07.962711: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4797 seconds and 3.8 Mi memory
2023-07-05 13:26:08.070781: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.7456 seconds and 74.8 Mi memory
2023-07-05 13:26:08.071025: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:08.084324: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:08.097243: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.4835 seconds and 82.7 Mi memory
2023-07-05 13:26:08.097514: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:08.143502: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9303 seconds and 3.7 Mi memory
2023-07-05 13:26:08.279817: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:08.365005: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.0783 seconds and 65.5 Mi memory
2023-07-05 13:26:08.365255: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:08.366398: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.6272 seconds and 3.8 Mi memory
2023-07-05 13:26:08.595537: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:08.666476: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2877 seconds and 3.7 Mi memory
2023-07-05 13:26:08.676277: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2067 seconds and 3.8 Mi memory
2023-07-05 13:26:08.784124: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3312 seconds and 3.7 Mi memory
2023-07-05 13:26:08.863635: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:08.872995: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.227 seconds and 72.1 Mi memory
2023-07-05 13:26:08.873276: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:08.879867: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:09.033720: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:09.332667: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9666 seconds and 3.7 Mi memory
2023-07-05 13:26:09.368714: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.0717 seconds and 28.4 Mi memory
2023-07-05 13:26:09.368977: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:09.500657: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1235 seconds and 3.8 Mi memory
2023-07-05 13:26:09.508587: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1843 seconds and 40.4 Mi memory
2023-07-05 13:26:09.508819: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:09.542860: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.0188 seconds and 22.2 Mi memory
2023-07-05 13:26:09.543218: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:09.564198: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:09.631968: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5601 seconds and 3.6 Mi memory
2023-07-05 13:26:09.651522: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:09.855934: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.8995 seconds and 102.4 Mi memory
2023-07-05 13:26:09.856220: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:09.881853: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7835 seconds and 3.7 Mi memory
2023-07-05 13:26:09.960235: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4507 seconds and 3.7 Mi memory
2023-07-05 13:26:09.987365: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6175 seconds and 3.7 Mi memory
2023-07-05 13:26:10.016613: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:10.071627: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:10.108287: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:10.119338: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5752 seconds and 3.7 Mi memory
2023-07-05 13:26:10.194048: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:10.209946: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:10.665558: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.6859 seconds and 73.3 Mi memory
2023-07-05 13:26:10.665827: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:10.869801: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.3052 seconds and 94.4 Mi memory
2023-07-05 13:26:10.870037: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:10.961336: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.6709 seconds and 41.1 Mi memory
2023-07-05 13:26:10.961717: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:10.986854: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1622 seconds and 16.0 Mi memory
2023-07-05 13:26:10.987100: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:11.099313: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1512 seconds and 31.7 Mi memory
2023-07-05 13:26:11.099538: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:11.201472: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.3273 seconds and 3.8 Mi memory
2023-07-05 13:26:11.391487: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:11.392712: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.359 seconds and 62.7 Mi memory
2023-07-05 13:26:11.392998: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:11.475661: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.0655 seconds and 24.8 Mi memory
2023-07-05 13:26:11.475894: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:11.534832: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.0972 seconds and 23.5 Mi memory
2023-07-05 13:26:11.535229: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:11.540198: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5523 seconds and 3.8 Mi memory
2023-07-05 13:26:11.608251: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:11.686163: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5859 seconds and 3.6 Mi memory
2023-07-05 13:26:11.724705: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:11.770575: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1517 seconds and 32.7 Mi memory
2023-07-05 13:26:11.770954: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:11.847204: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9763 seconds and 3.7 Mi memory
2023-07-05 13:26:11.983795: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5071 seconds and 3.8 Mi memory
2023-07-05 13:26:12.088126: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:12.114020: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:12.115647: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5795 seconds and 3.7 Mi memory
2023-07-05 13:26:12.147197: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2901 seconds and 3.7 Mi memory
2023-07-05 13:26:12.164399: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:12.257311: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.9762 seconds and 29.3 Mi memory
2023-07-05 13:26:12.257556: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:12.311334: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:12.333280: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.0651 seconds and 82.8 Mi memory
2023-07-05 13:26:12.333632: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:12.362227: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5904 seconds and 3.7 Mi memory
2023-07-05 13:26:12.406331: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:12.553454: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.6769 seconds and 75.5 Mi memory
2023-07-05 13:26:12.553704: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:12.570412: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.679 seconds and 87.7 Mi memory
2023-07-05 13:26:12.570648: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:12.585854: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.9893 seconds and 44.9 Mi memory
2023-07-05 13:26:12.586076: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:12.857359: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5987 seconds and 3.7 Mi memory
2023-07-05 13:26:12.875154: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2086 seconds and 3.8 Mi memory
2023-07-05 13:26:12.914567: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:12.967812: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1029 seconds and 32.0 Mi memory
2023-07-05 13:26:12.968169: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:13.097556: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.4809 seconds and 98.8 Mi memory
2023-07-05 13:26:13.097801: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:13.120382: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:13.171215: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5843 seconds and 3.7 Mi memory
2023-07-05 13:26:13.189309: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.3057 seconds and 68.6 Mi memory
2023-07-05 13:26:13.189598: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:13.212335: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.6305 seconds and 86.4 Mi memory
2023-07-05 13:26:13.212591: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:13.233767: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:13.418753: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.4561 seconds and 3.8 Mi memory
2023-07-05 13:26:13.483373: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5143 seconds and 3.8 Mi memory
2023-07-05 13:26:13.545374: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:13.554945: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2203 seconds and 3.7 Mi memory
2023-07-05 13:26:13.642494: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.7028 seconds and 106.6 Mi memory
2023-07-05 13:26:13.642734: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:13.676905: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:13.773088: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:13.775558: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.123 seconds and 34.1 Mi memory
2023-07-05 13:26:13.775874: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:13.787433: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2159 seconds and 3.7 Mi memory
2023-07-05 13:26:13.854043: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.4602 seconds and 3.8 Mi memory
2023-07-05 13:26:13.900113: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:14.025062: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:14.043066: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.3515 seconds and 82.2 Mi memory
2023-07-05 13:26:14.043331: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:14.065753: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8524 seconds and 3.8 Mi memory
2023-07-05 13:26:14.087439: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.0699 seconds and 27.6 Mi memory
2023-07-05 13:26:14.087716: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:14.246385: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:14.304876: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5281 seconds and 3.6 Mi memory
2023-07-05 13:26:14.355392: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:14.564348: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4756 seconds and 3.7 Mi memory
2023-07-05 13:26:14.627920: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.2559 seconds and 49.5 Mi memory
2023-07-05 13:26:14.628155: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:14.632995: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:14.766417: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.6279 seconds and 80.0 Mi memory
2023-07-05 13:26:14.766696: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:14.778578: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.8134 seconds and 54.1 Mi memory
2023-07-05 13:26:14.778855: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:15.029761: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.4753 seconds and 3.8 Mi memory
2023-07-05 13:26:15.085117: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.1154 seconds and 45.8 Mi memory
2023-07-05 13:26:15.085390: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:15.184013: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9936 seconds and 3.8 Mi memory
2023-07-05 13:26:15.200240: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1015 seconds and 3.7 Mi memory
2023-07-05 13:26:15.238505: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:15.299194: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.7508 seconds and 43.4 Mi memory
2023-07-05 13:26:15.299436: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:15.332427: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.9398 seconds and 32.3 Mi memory
2023-07-05 13:26:15.332820: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:15.374804: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:15.393712: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:15.511600: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8679 seconds and 3.8 Mi memory
2023-07-05 13:26:15.630333: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:15.696037: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0672 seconds and 3.7 Mi memory
2023-07-05 13:26:15.767298: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.4501 seconds and 134.1 Mi memory
2023-07-05 13:26:15.767674: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:15.773291: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.8924 seconds and 67.0 Mi memory
2023-07-05 13:26:15.773650: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:15.898449: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:15.927227: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5934 seconds and 3.7 Mi memory
2023-07-05 13:26:15.978438: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.9439 seconds and 93.1 Mi memory
2023-07-05 13:26:15.978676: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:15.985350: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:16.017885: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.2803 seconds and 61.6 Mi memory
2023-07-05 13:26:16.018257: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:16.227572: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1414 seconds and 3.7 Mi memory
2023-07-05 13:26:16.249036: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.6838 seconds and 85.6 Mi memory
2023-07-05 13:26:16.249271: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:16.289404: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2452 seconds and 3.9 Mi memory
2023-07-05 13:26:16.366108: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chrUn_KI270744v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:16.372539: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.414 seconds and 99.6 Mi memory
2023-07-05 13:26:16.372781: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:16.380317: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chrUn_KI270744v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0134 seconds and 2.9 Mi memory
2023-07-05 13:26:16.380469: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chrUn_KI270744v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:16.388801: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chrUn_KI270744v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0079 seconds and 3.6 Mi memory
2023-07-05 13:26:16.425516: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:16.428280: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1157 seconds and 36.0 Mi memory
2023-07-05 13:26:16.428541: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:16.438827: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:16.458538: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.2523 seconds and 60.9 Mi memory
2023-07-05 13:26:16.458777: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:16.507953: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.9103 seconds and 73.7 Mi memory
2023-07-05 13:26:16.508324: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:16.559879: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2596 seconds and 3.8 Mi memory
2023-07-05 13:26:16.590615: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.079 seconds and 39.0 Mi memory
2023-07-05 13:26:16.590992: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:16.637113: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8694 seconds and 3.7 Mi memory
2023-07-05 13:26:16.780291: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:16.809288: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.7242 seconds and 73.5 Mi memory
2023-07-05 13:26:16.809535: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:16.820898: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.783 seconds and 68.5 Mi memory
2023-07-05 13:26:16.821131: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:16.865998: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:16.876083: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6648 seconds and 90.8 Mi memory
2023-07-05 13:26:16.876321: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:16.876453: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0967 seconds and 3.7 Mi memory
2023-07-05 13:26:16.932254: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1576 seconds and 3.8 Mi memory
2023-07-05 13:26:16.934425: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6844 seconds and 3.7 Mi memory
2023-07-05 13:26:16.938084: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5087 seconds and 3.7 Mi memory
2023-07-05 13:26:17.037486: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:17.059713: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0754 seconds and 3.7 Mi memory
2023-07-05 13:26:17.152454: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.5715 seconds and 73.8 Mi memory
2023-07-05 13:26:17.152686: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:17.194827: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:17.212853: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1937 seconds and 3.8 Mi memory
2023-07-05 13:26:17.228860: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1072 seconds and 37.7 Mi memory
2023-07-05 13:26:17.229129: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:17.242832: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4743 seconds and 3.7 Mi memory
2023-07-05 13:26:17.354794: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:17.354849: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:17.389512: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:17.412426: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:17.419738: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:17.494379: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1208 seconds and 3.7 Mi memory
2023-07-05 13:26:17.499504: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9903 seconds and 3.7 Mi memory
2023-07-05 13:26:17.644594: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.185 seconds and 3.7 Mi memory
2023-07-05 13:26:17.650090: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:17.700283: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.022 seconds and 41.0 Mi memory
2023-07-05 13:26:17.700568: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:17.727325: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:17.738367: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.928 seconds and 3.7 Mi memory
2023-07-05 13:26:17.832489: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:17.855120: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.625 seconds and 3.8 Mi memory
2023-07-05 13:26:17.866443: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:17.903592: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:17.917971: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3261 seconds and 3.7 Mi memory
2023-07-05 13:26:17.992068: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1701 seconds and 3.8 Mi memory
2023-07-05 13:26:18.041415: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1642 seconds and 3.7 Mi memory
2023-07-05 13:26:18.158821: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1328 seconds and 46.0 Mi memory
2023-07-05 13:26:18.159259: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:18.191585: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4902 seconds and 3.8 Mi memory
2023-07-05 13:26:18.197232: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:18.264773: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:18.265872: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:18.282183: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:18.405846: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2524 seconds and 3.8 Mi memory
2023-07-05 13:26:18.514326: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chrUn_KI270744v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:18.535401: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chrUn_KI270744v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0202 seconds and 2.9 Mi memory
2023-07-05 13:26:18.535662: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chrUn_KI270744v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:18.541408: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chrUn_KI270744v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0052 seconds and 3.7 Mi memory
2023-07-05 13:26:18.624364: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:18.768636: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6084 seconds and 3.7 Mi memory
2023-07-05 13:26:18.824314: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:18.974179: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.9017 seconds and 42.9 Mi memory
2023-07-05 13:26:18.974423: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:19.379316: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1394 seconds and 36.6 Mi memory
2023-07-05 13:26:19.379674: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:19.460892: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.066 seconds and 24.0 Mi memory
2023-07-05 13:26:19.461294: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:19.542665: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1665 seconds and 32.5 Mi memory
2023-07-05 13:26:19.543045: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:19.559556: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.4503 seconds and 54.7 Mi memory
2023-07-05 13:26:19.559826: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:19.628842: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.4181 seconds and 56.5 Mi memory
2023-07-05 13:26:19.629076: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:19.754710: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.6993 seconds and 121.9 Mi memory
2023-07-05 13:26:19.755104: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:19.758064: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1268 seconds and 41.3 Mi memory
2023-07-05 13:26:19.758299: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:19.853119: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.5716 seconds and 98.8 Mi memory
2023-07-05 13:26:19.853397: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:19.940371: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5598 seconds and 3.8 Mi memory
2023-07-05 13:26:19.988416: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:20.101326: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6391 seconds and 3.7 Mi memory
2023-07-05 13:26:20.111037: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.915 seconds and 59.4 Mi memory
2023-07-05 13:26:20.111293: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:20.140069: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5961 seconds and 3.9 Mi memory
2023-07-05 13:26:20.168358: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:20.213239: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:20.217544: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2425 seconds and 3.8 Mi memory
2023-07-05 13:26:20.270031: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5109 seconds and 3.8 Mi memory
2023-07-05 13:26:20.362279: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:20.423614: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:20.565578: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.6764 seconds and 104.8 Mi memory
2023-07-05 13:26:20.565850: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:20.655157: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.2284 seconds and 39.5 Mi memory
2023-07-05 13:26:20.655544: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:20.692605: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0627 seconds and 3.7 Mi memory
2023-07-05 13:26:20.696410: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.0874 seconds and 46.7 Mi memory
2023-07-05 13:26:20.696645: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:20.828956: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2681 seconds and 3.8 Mi memory
2023-07-05 13:26:20.878908: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.0974 seconds and 28.4 Mi memory
2023-07-05 13:26:20.879164: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:20.918197: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:21.058125: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.7082 seconds and 107.8 Mi memory
2023-07-05 13:26:21.058415: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:21.071548: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.4146 seconds and 114.7 Mi memory
2023-07-05 13:26:21.071824: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:21.102671: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:21.162660: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.9973 seconds and 79.2 Mi memory
2023-07-05 13:26:21.163074: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:21.332216: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.2431 seconds and 46.4 Mi memory
2023-07-05 13:26:21.332233: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.4312 seconds and 68.3 Mi memory
2023-07-05 13:26:21.332455: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:21.332485: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:21.337694: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.3264 seconds and 112.2 Mi memory
2023-07-05 13:26:21.337978: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:21.362538: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.9178 seconds and 71.9 Mi memory
2023-07-05 13:26:21.362836: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:21.370258: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1741 seconds and 29.3 Mi memory
2023-07-05 13:26:21.370546: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:21.374003: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7175 seconds and 3.8 Mi memory
2023-07-05 13:26:21.390148: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.7373 seconds and 115.3 Mi memory
2023-07-05 13:26:21.390388: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:21.433188: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:21.504528: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3923 seconds and 3.7 Mi memory
2023-07-05 13:26:21.525714: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.433 seconds and 77.4 Mi memory
2023-07-05 13:26:21.525995: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:21.549744: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.8872 seconds and 116.3 Mi memory
2023-07-05 13:26:21.550021: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:21.564314: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6842 seconds and 3.8 Mi memory
2023-07-05 13:26:21.638795: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9132 seconds and 84.3 Mi memory
2023-07-05 13:26:21.639175: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:21.703641: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.985 seconds and 59.5 Mi memory
2023-07-05 13:26:21.703922: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:21.708658: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 18.0387 seconds and 118.1 Mi memory
2023-07-05 13:26:21.708935: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:21.710007: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:21.738296: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.8706 seconds and 60.4 Mi memory
2023-07-05 13:26:21.738558: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:21.818133: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:21.825035: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.4177 seconds and 81.7 Mi memory
2023-07-05 13:26:21.825270: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:21.854005: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.5822 seconds and 111.6 Mi memory
2023-07-05 13:26:21.854484: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:22.015688: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.8228 seconds and 62.8 Mi memory
2023-07-05 13:26:22.015977: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:22.060849: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3635 seconds and 3.8 Mi memory
2023-07-05 13:26:22.104956: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.9569 seconds and 73.0 Mi memory
2023-07-05 13:26:22.105239: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:22.151927: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7805 seconds and 3.7 Mi memory
2023-07-05 13:26:22.175141: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.9334 seconds and 86.3 Mi memory
2023-07-05 13:26:22.175422: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:22.211216: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0473 seconds and 3.7 Mi memory
2023-07-05 13:26:22.221953: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:22.246436: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:22.267541: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.5114 seconds and 3.8 Mi memory
2023-07-05 13:26:22.360624: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:22.388178: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:22.406736: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0734 seconds and 3.8 Mi memory
2023-07-05 13:26:22.416217: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.5618 seconds and 3.7 Mi memory
2023-07-05 13:26:22.564283: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:22.600329: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:22.701047: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7855 seconds and 45.1 Mi memory
2023-07-05 13:26:22.701333: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:22.721356: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.4868 seconds and 60.8 Mi memory
2023-07-05 13:26:22.721597: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:22.725784: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3927 seconds and 3.7 Mi memory
2023-07-05 13:26:22.800056: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1599 seconds and 3.8 Mi memory
2023-07-05 13:26:22.887740: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0615 seconds and 3.7 Mi memory
2023-07-05 13:26:22.912512: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:23.043512: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:23.057636: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.5115 seconds and 88.7 Mi memory
2023-07-05 13:26:23.057864: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:23.064392: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:23.193666: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.2941 seconds and 93.4 Mi memory
2023-07-05 13:26:23.193901: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:23.229026: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.6621 seconds and 3.7 Mi memory
2023-07-05 13:26:23.612316: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.1726 seconds and 79.7 Mi memory
2023-07-05 13:26:23.612601: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:23.621667: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2578 seconds and 3.7 Mi memory
2023-07-05 13:26:23.624116: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.5648 seconds and 3.8 Mi memory
2023-07-05 13:26:23.627349: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:23.677239: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.3382 seconds and 3.8 Mi memory
2023-07-05 13:26:23.817983: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.4618 seconds and 118.2 Mi memory
2023-07-05 13:26:23.818224: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:23.820122: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2932 seconds and 3.8 Mi memory
2023-07-05 13:26:23.877512: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:23.881525: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.2475 seconds and 76.1 Mi memory
2023-07-05 13:26:23.881804: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:23.891301: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.3402 seconds and 3.7 Mi memory
2023-07-05 13:26:23.926142: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.5346 seconds and 3.7 Mi memory
2023-07-05 13:26:23.952380: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:23.958026: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:23.970856: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.5575 seconds and 60.6 Mi memory
2023-07-05 13:26:23.971120: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:23.976991: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.1097 seconds and 90.8 Mi memory
2023-07-05 13:26:23.977228: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:23.998757: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.9259 seconds and 3.7 Mi memory
2023-07-05 13:26:24.002128: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2923 seconds and 3.8 Mi memory
2023-07-05 13:26:24.009147: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3069 seconds and 3.7 Mi memory
2023-07-05 13:26:24.014097: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1586 seconds and 3.7 Mi memory
2023-07-05 13:26:24.042402: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.3913 seconds and 88.4 Mi memory
2023-07-05 13:26:24.042763: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:24.045161: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8505 seconds and 3.8 Mi memory
2023-07-05 13:26:24.049845: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:24.088469: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.3836 seconds and 3.7 Mi memory
2023-07-05 13:26:24.192472: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 17.7627 seconds and 232.6 Mi memory
2023-07-05 13:26:24.192729: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:24.196926: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:24.200214: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:24.211836: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1531 seconds and 3.7 Mi memory
2023-07-05 13:26:24.247444: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5249 seconds and 3.7 Mi memory
2023-07-05 13:26:24.264246: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.397 seconds and 84.6 Mi memory
2023-07-05 13:26:24.264482: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:24.276714: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.8559 seconds and 53.0 Mi memory
2023-07-05 13:26:24.277002: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:24.319293: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.5796 seconds and 3.6 Mi memory
2023-07-05 13:26:24.346311: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.24 seconds and 3.7 Mi memory
2023-07-05 13:26:24.379519: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:24.417225: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2409 seconds and 3.8 Mi memory
2023-07-05 13:26:24.455085: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:24.493455: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:24.494113: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:24.504000: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8906 seconds and 3.7 Mi memory
2023-07-05 13:26:24.525671: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.6924 seconds and 27.6 Mi memory
2023-07-05 13:26:24.525908: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:24.572263: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:24.586473: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.5696 seconds and 3.7 Mi memory
2023-07-05 13:26:24.658578: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:24.685942: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:24.702790: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:24.764527: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:24.778420: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.0495 seconds and 96.2 Mi memory
2023-07-05 13:26:24.778654: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:24.783209: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8113 seconds and 3.7 Mi memory
2023-07-05 13:26:24.809854: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:24.814229: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:24.836373: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:24.864560: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9818 seconds and 3.7 Mi memory
2023-07-05 13:26:24.876137: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8325 seconds and 3.7 Mi memory
2023-07-05 13:26:24.919289: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.6525 seconds and 59.6 Mi memory
2023-07-05 13:26:24.919518: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:24.945025: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6671 seconds and 3.8 Mi memory
2023-07-05 13:26:24.961963: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.764 seconds and 93.7 Mi memory
2023-07-05 13:26:24.962199: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:24.992203: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:25.004814: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0267 seconds and 3.6 Mi memory
2023-07-05 13:26:25.062748: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7975 seconds and 3.7 Mi memory
2023-07-05 13:26:25.088655: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.4636 seconds and 35.6 Mi memory
2023-07-05 13:26:25.089017: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:25.209152: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.39 seconds and 3.8 Mi memory
2023-07-05 13:26:25.229537: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:25.243122: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:25.310135: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:25.328283: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8016 seconds and 3.7 Mi memory
2023-07-05 13:26:25.341041: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:25.430899: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:25.462817: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:25.581800: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:25.619143: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6328 seconds and 63.0 Mi memory
2023-07-05 13:26:25.619332: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.5044 seconds and 149.0 Mi memory
2023-07-05 13:26:25.619430: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:25.619585: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:25.685696: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:25.735443: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7726 seconds and 3.7 Mi memory
2023-07-05 13:26:25.802981: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8827 seconds and 3.6 Mi memory
2023-07-05 13:26:25.907372: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1279 seconds and 3.7 Mi memory
2023-07-05 13:26:26.018026: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:26.019284: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9294 seconds and 3.8 Mi memory
2023-07-05 13:26:26.187945: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:26.248822: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr14_GL000009v2_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:26.262568: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr14_GL000009v2_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0128 seconds and 3.1 Mi memory
2023-07-05 13:26:26.262705: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr14_GL000009v2_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:26.267344: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr14_GL000009v2_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0042 seconds and 3.8 Mi memory
2023-07-05 13:26:26.298717: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:26.305895: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1123 seconds and 3.7 Mi memory
2023-07-05 13:26:26.425972: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:26.444476: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr19.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:26.538471: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.5 seconds and 49.5 Mi memory
2023-07-05 13:26:26.538742: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:26.628191: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0077 seconds and 3.8 Mi memory
2023-07-05 13:26:26.710489: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.3205 seconds and 30.2 Mi memory
2023-07-05 13:26:26.710757: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:26.735806: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:26.817409: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.2518 seconds and 32.7 Mi memory
2023-07-05 13:26:26.817677: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:26.947790: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3273 seconds and 3.8 Mi memory
2023-07-05 13:26:27.216962: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.3125 seconds and 38.4 Mi memory
2023-07-05 13:26:27.217356: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:27.231741: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5198 seconds and 3.8 Mi memory
2023-07-05 13:26:27.272769: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.8482 seconds and 51.6 Mi memory
2023-07-05 13:26:27.273136: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:27.304074: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:27.336140: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:27.364100: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.081 seconds and 41.3 Mi memory
2023-07-05 13:26:27.364382: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:27.430194: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6114 seconds and 3.8 Mi memory
2023-07-05 13:26:27.490613: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:27.520659: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2733 seconds and 154.4 Mi memory
2023-07-05 13:26:27.520901: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:27.595186: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0555 seconds and 3.8 Mi memory
2023-07-05 13:26:27.746226: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1171 seconds and 31.2 Mi memory
2023-07-05 13:26:27.746495: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:27.822054: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:27.917045: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.643 seconds and 3.8 Mi memory
2023-07-05 13:26:27.981828: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1028 seconds and 37.1 Mi memory
2023-07-05 13:26:27.982208: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:28.016347: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.0971 seconds and 67.9 Mi memory
2023-07-05 13:26:28.016702: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:28.043737: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:28.178138: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.2188 seconds and 46.4 Mi memory
2023-07-05 13:26:28.178427: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:28.193535: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.239 seconds and 32.2 Mi memory
2023-07-05 13:26:28.193813: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:28.194241: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.996 seconds and 19.3 Mi memory
2023-07-05 13:26:28.194509: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:28.219538: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8543 seconds and 3.8 Mi memory
2023-07-05 13:26:28.241901: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1904 seconds and 50.6 Mi memory
2023-07-05 13:26:28.242293: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:28.266255: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.0648 seconds and 53.6 Mi memory
2023-07-05 13:26:28.266595: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:28.272339: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0541 seconds and 3.8 Mi memory
2023-07-05 13:26:28.362356: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6149 seconds and 3.7 Mi memory
2023-07-05 13:26:28.402581: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.9068 seconds and 24.2 Mi memory
2023-07-05 13:26:28.402818: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:28.429436: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.655 seconds and 102.6 Mi memory
2023-07-05 13:26:28.429809: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:28.468182: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:28.492709: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:28.570176: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.0753 seconds and 51.6 Mi memory
2023-07-05 13:26:28.570421: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:28.576488: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:28.609796: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.153 seconds and 28.9 Mi memory
2023-07-05 13:26:28.610074: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:28.616607: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.2357 seconds and 49.8 Mi memory
2023-07-05 13:26:28.616881: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:28.678177: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.5743 seconds and 52.7 Mi memory
2023-07-05 13:26:28.678436: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:28.685584: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1115 seconds and 44.4 Mi memory
2023-07-05 13:26:28.685786: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:28.700453: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5055 seconds and 3.8 Mi memory
2023-07-05 13:26:28.712479: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7292 seconds and 3.8 Mi memory
2023-07-05 13:26:28.763480: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:28.763909: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.0595 seconds and 36.9 Mi memory
2023-07-05 13:26:28.764164: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:28.769030: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5896 seconds and 3.6 Mi memory
2023-07-05 13:26:28.776323: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5087 seconds and 3.8 Mi memory
2023-07-05 13:26:28.807810: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:28.810903: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.1236 seconds and 51.8 Mi memory
2023-07-05 13:26:28.811333: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:28.852669: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:28.858463: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 4.0205 seconds and 28.6 Mi memory
2023-07-05 13:26:28.858845: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:28.863416: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3417 seconds and 3.8 Mi memory
2023-07-05 13:26:28.899369: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:28.904991: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.0798 seconds and 50.1 Mi memory
2023-07-05 13:26:28.905256: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:28.905454: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6622 seconds and 3.7 Mi memory
2023-07-05 13:26:28.966379: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.7188 seconds and 50.2 Mi memory
2023-07-05 13:26:28.966618: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:29.011275: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9936 seconds and 3.8 Mi memory
2023-07-05 13:26:29.031731: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6279 seconds and 3.8 Mi memory
2023-07-05 13:26:29.032487: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8369 seconds and 3.8 Mi memory
2023-07-05 13:26:29.037789: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:29.139390: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:29.149401: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:29.242482: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.556 seconds and 3.7 Mi memory
2023-07-05 13:26:29.276860: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6657 seconds and 3.7 Mi memory
2023-07-05 13:26:29.288809: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6709 seconds and 3.7 Mi memory
2023-07-05 13:26:29.304977: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7335 seconds and 3.8 Mi memory
2023-07-05 13:26:29.307797: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:29.315589: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:29.343042: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5779 seconds and 3.7 Mi memory
2023-07-05 13:26:29.378775: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:29.378808: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:29.403196: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:29.415180: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:29.438178: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:29.443915: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.0824 seconds and 87.4 Mi memory
2023-07-05 13:26:29.444360: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:29.445909: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6335 seconds and 3.7 Mi memory
2023-07-05 13:26:29.501392: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6414 seconds and 3.8 Mi memory
2023-07-05 13:26:29.522400: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:29.582026: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:29.689369: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.01 seconds and 3.7 Mi memory
2023-07-05 13:26:29.826484: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.7611 seconds and 83.3 Mi memory
2023-07-05 13:26:29.826736: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:29.836498: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.869 seconds and 3.8 Mi memory
2023-07-05 13:26:29.854313: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.865 seconds and 86.9 Mi memory
2023-07-05 13:26:29.854554: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:29.871445: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7019 seconds and 39.2 Mi memory
2023-07-05 13:26:29.871842: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:29.888928: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:29.990837: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.776 seconds and 67.9 Mi memory
2023-07-05 13:26:29.991203: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:30.075754: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1696 seconds and 3.6 Mi memory
2023-07-05 13:26:30.103192: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.1897 seconds and 40.7 Mi memory
2023-07-05 13:26:30.103558: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:30.119918: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:30.175601: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.1309 seconds and 77.6 Mi memory
2023-07-05 13:26:30.175840: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:30.273209: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr19.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.8276 seconds and 57.6 Mi memory
2023-07-05 13:26:30.273495: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr19.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:30.327364: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.9714 seconds and 101.7 Mi memory
2023-07-05 13:26:30.327602: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:30.330846: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:30.406582: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9759 seconds and 3.7 Mi memory
2023-07-05 13:26:30.486331: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.041 seconds and 3.8 Mi memory
2023-07-05 13:26:30.536286: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1731 seconds and 79.2 Mi memory
2023-07-05 13:26:30.536649: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:30.668094: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2776 seconds and 66.1 Mi memory
2023-07-05 13:26:30.668434: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:30.720754: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr19.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4464 seconds and 3.7 Mi memory
2023-07-05 13:26:30.743965: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.3881 seconds and 78.6 Mi memory
2023-07-05 13:26:30.744202: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:30.795482: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:30.797429: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_GL000219v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:30.817249: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_GL000219v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.019 seconds and 3.1 Mi memory
2023-07-05 13:26:30.817389: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_GL000219v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:30.823505: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_GL000219v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0056 seconds and 3.7 Mi memory
2023-07-05 13:26:30.831282: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0037 seconds and 3.7 Mi memory
2023-07-05 13:26:30.841217: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9684 seconds and 3.7 Mi memory
2023-07-05 13:26:30.873342: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr9.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:30.900345: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:30.965186: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chrUn_KI270744v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:30.980340: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chrUn_KI270744v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0143 seconds and 3.0 Mi memory
2023-07-05 13:26:30.980521: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chrUn_KI270744v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:30.986276: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chrUn_KI270744v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.005 seconds and 3.8 Mi memory
2023-07-05 13:26:31.032351: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:31.041579: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:31.064001: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2083 seconds and 3.8 Mi memory
2023-07-05 13:26:31.123511: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9469 seconds and 3.8 Mi memory
2023-07-05 13:26:31.287641: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1831 seconds and 3.6 Mi memory
2023-07-05 13:26:31.291680: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8575 seconds and 86.9 Mi memory
2023-07-05 13:26:31.291954: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:31.337791: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:31.404897: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:31.467432: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4752 seconds and 3.9 Mi memory
2023-07-05 13:26:31.520590: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8095 seconds and 48.0 Mi memory
2023-07-05 13:26:31.520872: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:31.627136: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:31.635980: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.976 seconds and 54.7 Mi memory
2023-07-05 13:26:31.636375: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:31.711053: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:31.767105: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.5441 seconds and 44.9 Mi memory
2023-07-05 13:26:31.767387: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:31.795999: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2582 seconds and 3.8 Mi memory
2023-07-05 13:26:31.855362: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.6248 seconds and 85.9 Mi memory
2023-07-05 13:26:31.855635: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:31.867537: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.0521 seconds and 74.6 Mi memory
2023-07-05 13:26:31.867783: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:31.980503: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:32.065997: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3967 seconds and 3.8 Mi memory
2023-07-05 13:26:32.091221: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3463 seconds and 3.8 Mi memory
2023-07-05 13:26:32.151639: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8233 seconds and 3.7 Mi memory
2023-07-05 13:26:32.321164: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.5101 seconds and 65.0 Mi memory
2023-07-05 13:26:32.321518: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:32.369129: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0764 seconds and 3.8 Mi memory
2023-07-05 13:26:32.377352: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7399 seconds and 3.7 Mi memory
2023-07-05 13:26:32.506717: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chrUn_KI270751v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:32.520144: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chrUn_KI270751v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.012 seconds and 3.0 Mi memory
2023-07-05 13:26:32.520286: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chrUn_KI270751v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:32.525201: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chrUn_KI270751v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0045 seconds and 3.7 Mi memory
2023-07-05 13:26:32.538635: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.682 seconds and 3.8 Mi memory
2023-07-05 13:26:32.554479: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chrUn_KI270744v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:32.567811: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chrUn_KI270744v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0124 seconds and 3.1 Mi memory
2023-07-05 13:26:32.567951: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chrUn_KI270744v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:32.572644: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.704 seconds and 3.7 Mi memory
2023-07-05 13:26:32.573320: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chrUn_KI270744v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0049 seconds and 3.6 Mi memory
2023-07-05 13:26:32.606831: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.0238 seconds and 95.0 Mi memory
2023-07-05 13:26:32.607089: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:32.781970: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:32.808154: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.9046 seconds and 15.9 Mi memory
2023-07-05 13:26:32.808370: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:32.830335: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:32.875372: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:32.921496: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:32.957540: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4359 seconds and 3.8 Mi memory
2023-07-05 13:26:32.961920: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:32.986025: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:32.996128: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:33.059279: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7369 seconds and 3.8 Mi memory
2023-07-05 13:26:33.101921: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chrUn_KI270744v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:33.123643: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chrUn_KI270744v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0205 seconds and 3.1 Mi memory
2023-07-05 13:26:33.123816: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chrUn_KI270744v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:33.128794: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chrUn_KI270744v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0045 seconds and 3.7 Mi memory
2023-07-05 13:26:33.132862: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3647 seconds and 3.7 Mi memory
2023-07-05 13:26:33.169082: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.36 seconds and 3.7 Mi memory
2023-07-05 13:26:33.291056: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:33.319265: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.053 seconds and 62.8 Mi memory
2023-07-05 13:26:33.319503: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:33.341371: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:33.410405: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.6737 seconds and 87.0 Mi memory
2023-07-05 13:26:33.410673: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:33.427632: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:33.433567: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:33.664703: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0569 seconds and 3.7 Mi memory
2023-07-05 13:26:33.876581: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:34.047777: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6362 seconds and 3.7 Mi memory
2023-07-05 13:26:34.270430: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:34.630138: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.8071 seconds and 87.0 Mi memory
2023-07-05 13:26:34.630403: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:35.479243: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8479 seconds and 3.7 Mi memory
2023-07-05 13:26:35.514900: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.021 seconds and 41.9 Mi memory
2023-07-05 13:26:35.515319: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:35.523508: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2032 seconds and 3.8 Mi memory
2023-07-05 13:26:35.731458: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:35.848768: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.271 seconds and 64.0 Mi memory
2023-07-05 13:26:35.849032: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:35.898317: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:35.960772: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.3591 seconds and 126.6 Mi memory
2023-07-05 13:26:35.961129: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:36.187597: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6714 seconds and 3.7 Mi memory
2023-07-05 13:26:36.447433: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.6283 seconds and 74.0 Mi memory
2023-07-05 13:26:36.447671: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:36.545709: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6958 seconds and 3.7 Mi memory
2023-07-05 13:26:36.730322: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.2386 seconds and 60.1 Mi memory
2023-07-05 13:26:36.730686: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:36.760031: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:36.811849: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:36.874626: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.5694 seconds and 55.2 Mi memory
2023-07-05 13:26:36.874905: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:36.881786: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.5494 seconds and 37.0 Mi memory
2023-07-05 13:26:36.882061: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:37.111930: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7748 seconds and 73.3 Mi memory
2023-07-05 13:26:37.112290: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:37.143771: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.29 seconds and 45.9 Mi memory
2023-07-05 13:26:37.144191: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:37.318382: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.2761 seconds and 40.5 Mi memory
2023-07-05 13:26:37.318658: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:37.366318: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.5574 seconds and 41.3 Mi memory
2023-07-05 13:26:37.366596: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:37.736012: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7739 seconds and 3.8 Mi memory
2023-07-05 13:26:37.769621: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8867 seconds and 3.8 Mi memory
2023-07-05 13:26:37.818247: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.0537 seconds and 54.9 Mi memory
2023-07-05 13:26:37.818639: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:37.948755: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.0483 seconds and 79.9 Mi memory
2023-07-05 13:26:37.949017: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:37.971088: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.6321 seconds and 36.7 Mi memory
2023-07-05 13:26:37.971421: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:37.988374: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.5189 seconds and 49.5 Mi memory
2023-07-05 13:26:37.988762: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:38.045322: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3137 seconds and 3.8 Mi memory
2023-07-05 13:26:38.111105: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.235 seconds and 3.7 Mi memory
2023-07-05 13:26:38.143074: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8236 seconds and 3.7 Mi memory
2023-07-05 13:26:38.148695: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:38.162067: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.1232 seconds and 48.7 Mi memory
2023-07-05 13:26:38.162418: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:38.261757: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chrUn_KI270744v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:38.282770: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chrUn_KI270744v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0196 seconds and 3.0 Mi memory
2023-07-05 13:26:38.283282: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chrUn_KI270744v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:38.284505: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.8524 seconds and 101.1 Mi memory
2023-07-05 13:26:38.284743: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:38.289567: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chrUn_KI270744v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0057 seconds and 3.6 Mi memory
2023-07-05 13:26:38.294226: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.1538 seconds and 80.2 Mi memory
2023-07-05 13:26:38.294480: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:38.321378: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1761 seconds and 3.7 Mi memory
2023-07-05 13:26:38.373845: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.3804 seconds and 125.3 Mi memory
2023-07-05 13:26:38.374126: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:38.394616: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 8.9784 seconds and 46.7 Mi memory
2023-07-05 13:26:38.394889: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:38.395308: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0278 seconds and 3.8 Mi memory
2023-07-05 13:26:38.417494: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.7053 seconds and 90.0 Mi memory
2023-07-05 13:26:38.417740: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:38.431545: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.6661 seconds and 102.0 Mi memory
2023-07-05 13:26:38.431763: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:38.441120: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.4596 seconds and 86.2 Mi memory
2023-07-05 13:26:38.441353: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:38.519684: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4064 seconds and 3.8 Mi memory
2023-07-05 13:26:38.525886: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2818 seconds and 76.6 Mi memory
2023-07-05 13:26:38.526252: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:38.557634: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2156 seconds and 93.8 Mi memory
2023-07-05 13:26:38.557894: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:38.567476: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6677 seconds and 13.1 Mi memory
2023-07-05 13:26:38.567703: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:38.573632: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1253 seconds and 3.7 Mi memory
2023-07-05 13:26:38.578579: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:38.581089: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.2644 seconds and 59.1 Mi memory
2023-07-05 13:26:38.581469: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:38.594728: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:38.596934: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:38.648157: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:38.685308: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.2463 seconds and 49.0 Mi memory
2023-07-05 13:26:38.685592: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:38.769800: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7972 seconds and 3.7 Mi memory
2023-07-05 13:26:38.773910: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6234 seconds and 90.2 Mi memory
2023-07-05 13:26:38.774188: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:38.780378: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:38.799962: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:38.843509: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.4637 seconds and 80.5 Mi memory
2023-07-05 13:26:38.843783: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:38.930288: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.6189 seconds and 92.8 Mi memory
2023-07-05 13:26:38.930519: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:39.007071: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4386 seconds and 3.6 Mi memory
2023-07-05 13:26:39.024109: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.5006 seconds and 135.2 Mi memory
2023-07-05 13:26:39.024389: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:39.072207: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:39.138013: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.4512 seconds and 41.3 Mi memory
2023-07-05 13:26:39.138246: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:39.152342: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2025 seconds and 3.7 Mi memory
2023-07-05 13:26:39.187347: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:39.191217: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8114 seconds and 132.9 Mi memory
2023-07-05 13:26:39.191503: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:39.233982: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:39.243145: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6601 seconds and 45.9 Mi memory
2023-07-05 13:26:39.243485: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:39.265729: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:39.291885: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4722 seconds and 3.7 Mi memory
2023-07-05 13:26:39.325695: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.8619 seconds and 107.0 Mi memory
2023-07-05 13:26:39.326068: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:39.342682: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9004 seconds and 3.8 Mi memory
2023-07-05 13:26:39.352918: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3631 seconds and 3.8 Mi memory
2023-07-05 13:26:39.376461: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9722 seconds and 89.0 Mi memory
2023-07-05 13:26:39.376707: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:39.408901: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:39.441831: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2529 seconds and 142.9 Mi memory
2023-07-05 13:26:39.442189: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:39.481354: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0627 seconds and 3.8 Mi memory
2023-07-05 13:26:39.504983: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.4859 seconds and 57.0 Mi memory
2023-07-05 13:26:39.505325: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:39.528646: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:39.535116: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3717 seconds and 3.8 Mi memory
2023-07-05 13:26:39.544221: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1485 seconds and 3.8 Mi memory
2023-07-05 13:26:39.571099: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2757 seconds and 3.8 Mi memory
2023-07-05 13:26:39.614025: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.3145 seconds and 106.7 Mi memory
2023-07-05 13:26:39.614258: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:39.635791: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.853 seconds and 92.6 Mi memory
2023-07-05 13:26:39.636192: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:39.771490: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:39.783040: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:39.817528: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:39.866684: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:39.875952: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:39.922212: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr9.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.0482 seconds and 133.6 Mi memory
2023-07-05 13:26:39.922487: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr9.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:39.922336: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:39.930032: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3475 seconds and 3.8 Mi memory
2023-07-05 13:26:39.931483: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1563 seconds and 3.7 Mi memory
2023-07-05 13:26:39.986020: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.5594 seconds and 65.5 Mi memory
2023-07-05 13:26:39.986282: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:39.990862: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.699 seconds and 87.7 Mi memory
2023-07-05 13:26:39.991110: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:40.054677: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.6258 seconds and 69.9 Mi memory
2023-07-05 13:26:40.054976: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:40.143158: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2985 seconds and 3.7 Mi memory
2023-07-05 13:26:40.233014: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6743 seconds and 3.8 Mi memory
2023-07-05 13:26:40.254701: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5682 seconds and 3.6 Mi memory
2023-07-05 13:26:40.264840: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:40.308697: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:40.373138: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1807 seconds and 3.7 Mi memory
2023-07-05 13:26:40.404078: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1185 seconds and 3.8 Mi memory
2023-07-05 13:26:40.419386: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.987 seconds and 3.7 Mi memory
2023-07-05 13:26:40.527041: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:40.528717: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1538 seconds and 3.7 Mi memory
2023-07-05 13:26:40.553728: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0265 seconds and 3.8 Mi memory
2023-07-05 13:26:40.595494: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.57 seconds and 3.7 Mi memory
2023-07-05 13:26:40.607275: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9701 seconds and 3.7 Mi memory
2023-07-05 13:26:40.669124: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2916 seconds and 3.8 Mi memory
2023-07-05 13:26:40.716722: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:40.716994: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:40.731816: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0141 seconds and 3.0 Mi memory
2023-07-05 13:26:40.731967: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:40.738956: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0065 seconds and 3.8 Mi memory
2023-07-05 13:26:40.781445: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:40.786110: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6472 seconds and 3.6 Mi memory
2023-07-05 13:26:40.835734: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7799 seconds and 3.7 Mi memory
2023-07-05 13:26:40.841360: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9099 seconds and 3.8 Mi memory
2023-07-05 13:26:40.906030: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6615 seconds and 3.7 Mi memory
2023-07-05 13:26:40.915079: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.6473 seconds and 9.5 Mi memory
2023-07-05 13:26:40.915446: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:40.921632: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9298 seconds and 3.8 Mi memory
2023-07-05 13:26:40.927779: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:40.940005: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.011 seconds and 3.0 Mi memory
2023-07-05 13:26:40.940164: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:40.945048: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0044 seconds and 3.7 Mi memory
2023-07-05 13:26:40.950960: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:40.956594: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6296 seconds and 3.7 Mi memory
2023-07-05 13:26:41.061464: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.089342: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.122410: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6161 seconds and 3.8 Mi memory
2023-07-05 13:26:41.132463: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chrUn_KI270748v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.137588: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2213 seconds and 3.7 Mi memory
2023-07-05 13:26:41.144087: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chrUn_KI270744v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.144459: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chrUn_KI270748v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0114 seconds and 3.1 Mi memory
2023-07-05 13:26:41.144605: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chrUn_KI270748v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:41.150119: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chrUn_KI270748v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.005 seconds and 3.7 Mi memory
2023-07-05 13:26:41.161404: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chrUn_KI270744v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0162 seconds and 3.0 Mi memory
2023-07-05 13:26:41.161572: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chrUn_KI270744v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:41.164039: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.167147: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chrUn_KI270744v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.005 seconds and 3.7 Mi memory
2023-07-05 13:26:41.170407: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.176470: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0113 seconds and 3.0 Mi memory
2023-07-05 13:26:41.176626: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:41.182085: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.005 seconds and 3.7 Mi memory
2023-07-05 13:26:41.203729: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.207688: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7644 seconds and 3.8 Mi memory
2023-07-05 13:26:41.225560: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.229399: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6143 seconds and 3.8 Mi memory
2023-07-05 13:26:41.238131: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0117 seconds and 3.1 Mi memory
2023-07-05 13:26:41.238271: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:41.245913: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0073 seconds and 3.7 Mi memory
2023-07-05 13:26:41.258623: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.292740: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.332694: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.354599: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr9.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4311 seconds and 3.8 Mi memory
2023-07-05 13:26:41.378065: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.388956: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.420093: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.429214: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chrUn_KI270748v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.435612: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.440362: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chrUn_KI270748v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0105 seconds and 3.0 Mi memory
2023-07-05 13:26:41.440487: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chrUn_KI270748v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:41.445302: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chrUn_KI270748v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0043 seconds and 3.7 Mi memory
2023-07-05 13:26:41.446996: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270588v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.447444: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0108 seconds and 3.0 Mi memory
2023-07-05 13:26:41.447607: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:41.452520: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0044 seconds and 3.7 Mi memory
2023-07-05 13:26:41.455990: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270588v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0076 seconds and 3.1 Mi memory
2023-07-05 13:26:41.456136: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270588v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:41.461667: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270588v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.005 seconds and 3.6 Mi memory
2023-07-05 13:26:41.504395: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270423v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.507263: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.514579: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270423v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0095 seconds and 3.0 Mi memory
2023-07-05 13:26:41.514736: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270423v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:41.515523: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5284 seconds and 3.7 Mi memory
2023-07-05 13:26:41.519290: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270423v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.004 seconds and 3.7 Mi memory
2023-07-05 13:26:41.526320: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0177 seconds and 3.1 Mi memory
2023-07-05 13:26:41.526488: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:41.529105: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.4845 seconds and 74.7 Mi memory
2023-07-05 13:26:41.529478: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:41.531167: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0042 seconds and 3.8 Mi memory
2023-07-05 13:26:41.548881: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270744v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.561778: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chrUn_KI270751v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.566812: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.567642: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270744v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0182 seconds and 3.1 Mi memory
2023-07-05 13:26:41.567786: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270744v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:41.573840: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270744v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0056 seconds and 3.6 Mi memory
2023-07-05 13:26:41.582686: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chrUn_KI270751v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0204 seconds and 2.9 Mi memory
2023-07-05 13:26:41.582817: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chrUn_KI270751v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:41.586396: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270362v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.588808: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chrUn_KI270751v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0055 seconds and 3.8 Mi memory
2023-07-05 13:26:41.592020: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270362v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0051 seconds and 2.9 Mi memory
2023-07-05 13:26:41.592150: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270362v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:41.594371: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.597005: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270362v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0044 seconds and 3.7 Mi memory
2023-07-05 13:26:41.631139: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.657726: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270516v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.663726: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270516v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0055 seconds and 3.2 Mi memory
2023-07-05 13:26:41.663852: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270516v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:41.668162: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270516v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0038 seconds and 3.7 Mi memory
2023-07-05 13:26:41.709544: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.712844: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270412v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.719188: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270412v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0059 seconds and 3.0 Mi memory
2023-07-05 13:26:41.719316: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270412v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:41.723667: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270412v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0039 seconds and 3.8 Mi memory
2023-07-05 13:26:41.759918: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr14_KI270723v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.767751: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr14_KI270723v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0073 seconds and 3.1 Mi memory
2023-07-05 13:26:41.767878: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr14_KI270723v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:41.772223: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr14_KI270723v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0039 seconds and 3.7 Mi memory
2023-07-05 13:26:41.821036: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr14.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.858157: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.869489: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:41.994470: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:42.119439: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:42.629634: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.3208 seconds and 70.1 Mi memory
2023-07-05 13:26:42.629872: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:42.693143: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7703 seconds and 99.1 Mi memory
2023-07-05 13:26:42.693386: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:42.938708: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.0622 seconds and 60.4 Mi memory
2023-07-05 13:26:42.938994: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:42.952155: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.062 seconds and 104.6 Mi memory
2023-07-05 13:26:42.952447: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:43.003100: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.0061 seconds and 118.9 Mi memory
2023-07-05 13:26:43.003345: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:43.202834: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8606 seconds and 68.1 Mi memory
2023-07-05 13:26:43.203097: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:43.484192: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9538 seconds and 3.7 Mi memory
2023-07-05 13:26:43.727164: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.9307 seconds and 107.3 Mi memory
2023-07-05 13:26:43.727405: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:43.729942: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chrUn_GL000216v2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:43.735467: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.6146 seconds and 60.2 Mi memory
2023-07-05 13:26:43.735981: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:43.736608: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chrUn_GL000216v2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0059 seconds and 3.0 Mi memory
2023-07-05 13:26:43.736763: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chrUn_GL000216v2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:43.741615: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chrUn_GL000216v2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0044 seconds and 3.8 Mi memory
2023-07-05 13:26:43.805284: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1112 seconds and 3.7 Mi memory
2023-07-05 13:26:43.873692: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:44.079362: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:44.109757: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1698 seconds and 3.8 Mi memory
2023-07-05 13:26:44.248679: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2445 seconds and 3.7 Mi memory
2023-07-05 13:26:44.259206: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3057 seconds and 3.7 Mi memory
2023-07-05 13:26:44.319778: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2866 seconds and 98.8 Mi memory
2023-07-05 13:26:44.320026: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:44.355984: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1522 seconds and 3.7 Mi memory
2023-07-05 13:26:44.444707: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.814 seconds and 3.6 Mi memory
2023-07-05 13:26:44.593968: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:44.617046: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:44.711087: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chrUn_KI270741v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:44.733965: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chrUn_KI270741v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0217 seconds and 3.1 Mi memory
2023-07-05 13:26:44.734117: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chrUn_KI270741v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:44.739668: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chrUn_KI270741v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0051 seconds and 3.7 Mi memory
2023-07-05 13:26:44.750283: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.1223 seconds and 115.0 Mi memory
2023-07-05 13:26:44.750513: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:44.751189: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:44.943579: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.5377 seconds and 72.0 Mi memory
2023-07-05 13:26:44.943937: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:45.027922: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:45.131097: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:45.210910: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4741 seconds and 3.7 Mi memory
2023-07-05 13:26:45.456449: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:45.603320: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.146 seconds and 3.0 Mi memory
2023-07-05 13:26:45.603561: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:45.718695: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.1207 seconds and 84.9 Mi memory
2023-07-05 13:26:45.719132: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:45.734608: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0953 seconds and 3.7 Mi memory
2023-07-05 13:26:45.822488: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0943 seconds and 3.7 Mi memory
2023-07-05 13:26:45.823494: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.2273 seconds and 70.8 Mi memory
2023-07-05 13:26:45.823778: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:45.971062: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.1894 seconds and 81.5 Mi memory
2023-07-05 13:26:45.971340: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:46.001516: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6806 seconds and 3.8 Mi memory
2023-07-05 13:26:46.050289: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:46.059220: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.008 seconds and 3.1 Mi memory
2023-07-05 13:26:46.059358: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:46.065088: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0053 seconds and 3.7 Mi memory
2023-07-05 13:26:46.075009: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:46.233140: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:46.242054: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.008 seconds and 3.1 Mi memory
2023-07-05 13:26:46.242200: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:46.246880: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0042 seconds and 3.7 Mi memory
2023-07-05 13:26:46.275611: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:46.303921: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.4721 seconds and 70.7 Mi memory
2023-07-05 13:26:46.304191: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:46.306537: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.8964 seconds and 86.2 Mi memory
2023-07-05 13:26:46.306811: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:46.381937: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.4185 seconds and 57.5 Mi memory
2023-07-05 13:26:46.382213: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:46.382626: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6313 seconds and 3.8 Mi memory
2023-07-05 13:26:46.443562: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.6425 seconds and 79.0 Mi memory
2023-07-05 13:26:46.443833: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:46.496599: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.5096 seconds and 67.0 Mi memory
2023-07-05 13:26:46.496840: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:46.557031: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8369 seconds and 3.7 Mi memory
2023-07-05 13:26:46.575021: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:46.583508: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0078 seconds and 3.1 Mi memory
2023-07-05 13:26:46.583659: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:46.590059: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.006 seconds and 3.7 Mi memory
2023-07-05 13:26:46.592482: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:46.617950: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.0882 seconds and 53.4 Mi memory
2023-07-05 13:26:46.618224: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:46.625449: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8001 seconds and 3.7 Mi memory
2023-07-05 13:26:46.645544: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.7217 seconds and 69.2 Mi memory
2023-07-05 13:26:46.645939: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:46.655803: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.8708 seconds and 87.4 Mi memory
2023-07-05 13:26:46.656215: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:46.700871: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.4346 seconds and 87.0 Mi memory
2023-07-05 13:26:46.701269: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:46.759732: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7874 seconds and 3.7 Mi memory
2023-07-05 13:26:46.769947: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8251 seconds and 3.8 Mi memory
2023-07-05 13:26:46.838639: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.9705 seconds and 53.2 Mi memory
2023-07-05 13:26:46.838908: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:46.866654: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.4314 seconds and 49.3 Mi memory
2023-07-05 13:26:46.867048: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:46.918012: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.3898 seconds and 52.1 Mi memory
2023-07-05 13:26:46.918275: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:46.922106: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:46.975259: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6673 seconds and 3.7 Mi memory
2023-07-05 13:26:46.982630: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:47.048945: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:47.093116: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:47.202883: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.4845 seconds and 51.2 Mi memory
2023-07-05 13:26:47.203187: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:47.206254: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7614 seconds and 3.8 Mi memory
2023-07-05 13:26:47.227690: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.9166 seconds and 40.5 Mi memory
2023-07-05 13:26:47.227958: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:47.257407: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.4387 seconds and 97.3 Mi memory
2023-07-05 13:26:47.257671: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:47.349779: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6925 seconds and 3.8 Mi memory
2023-07-05 13:26:47.382328: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:47.390483: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.4384 seconds and 82.9 Mi memory
2023-07-05 13:26:47.390758: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:47.434338: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8153 seconds and 3.7 Mi memory
2023-07-05 13:26:47.448478: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7461 seconds and 3.6 Mi memory
2023-07-05 13:26:47.532633: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8857 seconds and 3.7 Mi memory
2023-07-05 13:26:47.545290: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:47.552787: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2778 seconds and 84.9 Mi memory
2023-07-05 13:26:47.553144: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:47.646816: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:47.659327: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.7818 seconds and 105.6 Mi memory
2023-07-05 13:26:47.659684: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:47.712030: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:47.790382: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:47.808002: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8889 seconds and 3.6 Mi memory
2023-07-05 13:26:47.818819: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:47.825525: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9856 seconds and 3.8 Mi memory
2023-07-05 13:26:47.882023: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:47.927044: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.544 seconds and 3.8 Mi memory
2023-07-05 13:26:47.955692: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7267 seconds and 3.7 Mi memory
2023-07-05 13:26:47.962975: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 7.1804 seconds and 52.6 Mi memory
2023-07-05 13:26:47.963245: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:48.005448: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8013 seconds and 3.8 Mi memory
2023-07-05 13:26:48.023397: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7183 seconds and 3.7 Mi memory
2023-07-05 13:26:48.027030: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7683 seconds and 3.7 Mi memory
2023-07-05 13:26:48.081826: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.6919 seconds and 39.0 Mi memory
2023-07-05 13:26:48.082064: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6903 seconds and 3.7 Mi memory
2023-07-05 13:26:48.082262: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:48.136136: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6385 seconds and 3.7 Mi memory
2023-07-05 13:26:48.184793: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:48.224919: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.357 seconds and 3.8 Mi memory
2023-07-05 13:26:48.252860: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:48.294654: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chrUn_KI270751v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:48.305824: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chrUn_KI270751v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0099 seconds and 3.1 Mi memory
2023-07-05 13:26:48.305979: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chrUn_KI270751v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:48.310990: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chrUn_KI270751v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0044 seconds and 3.7 Mi memory
2023-07-05 13:26:48.408429: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:48.418818: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0092 seconds and 2.9 Mi memory
2023-07-05 13:26:48.418979: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:48.423731: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0043 seconds and 3.8 Mi memory
2023-07-05 13:26:48.446899: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:48.452297: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:48.452945: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:48.489995: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:48.502420: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0109 seconds and 3.1 Mi memory
2023-07-05 13:26:48.502574: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:48.508110: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0051 seconds and 3.7 Mi memory
2023-07-05 13:26:48.509804: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:48.719902: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6366 seconds and 3.7 Mi memory
2023-07-05 13:26:48.749678: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:48.770699: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr14.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.9488 seconds and 103.7 Mi memory
2023-07-05 13:26:48.771105: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr14.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:48.823734: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:48.923654: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9595 seconds and 3.7 Mi memory
2023-07-05 13:26:48.962863: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:48.967380: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3068 seconds and 3.8 Mi memory
2023-07-05 13:26:49.033050: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.3838 seconds and 98.0 Mi memory
2023-07-05 13:26:49.033285: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:49.049863: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:49.149592: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:49.167694: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr14_GL000009v2_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:49.179059: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr14_GL000009v2_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0102 seconds and 3.0 Mi memory
2023-07-05 13:26:49.179201: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr14_GL000009v2_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:49.184310: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr14_GL000009v2_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0046 seconds and 3.7 Mi memory
2023-07-05 13:26:49.184435: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:49.193152: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0077 seconds and 3.0 Mi memory
2023-07-05 13:26:49.193290: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:49.197700: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.004 seconds and 3.6 Mi memory
2023-07-05 13:26:49.222083: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6676 seconds and 3.7 Mi memory
2023-07-05 13:26:49.340276: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:49.341558: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.6091 seconds and 101.1 Mi memory
2023-07-05 13:26:49.341813: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:49.591565: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:49.724428: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:49.764363: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr14.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9922 seconds and 3.7 Mi memory
2023-07-05 13:26:49.824599: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270593v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:49.832675: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270593v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0071 seconds and 3.0 Mi memory
2023-07-05 13:26:49.832810: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270593v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:49.837222: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270593v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0039 seconds and 3.8 Mi memory
2023-07-05 13:26:49.855303: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270448v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:49.861230: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270448v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0055 seconds and 3.1 Mi memory
2023-07-05 13:26:49.861350: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270448v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:49.863238: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6749 seconds and 56.0 Mi memory
2023-07-05 13:26:49.863470: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:49.865779: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270448v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.004 seconds and 3.7 Mi memory
2023-07-05 13:26:49.884024: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270422v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:49.889295: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270422v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0048 seconds and 3.1 Mi memory
2023-07-05 13:26:49.889420: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270422v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:49.894016: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270422v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0041 seconds and 3.8 Mi memory
2023-07-05 13:26:49.903650: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270330v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:49.908482: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270330v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0044 seconds and 3.1 Mi memory
2023-07-05 13:26:49.908603: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270330v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:49.913158: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270330v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0041 seconds and 3.6 Mi memory
2023-07-05 13:26:49.926445: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr14_GL000009v2_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:49.951402: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.1382 seconds and 50.1 Mi memory
2023-07-05 13:26:49.951792: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:49.954373: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr14_GL000009v2_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0274 seconds and 3.1 Mi memory
2023-07-05 13:26:49.954520: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr14_GL000009v2_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:49.960895: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr14_GL000009v2_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0059 seconds and 3.8 Mi memory
2023-07-05 13:26:49.967549: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270418v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:49.972724: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270418v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0047 seconds and 3.0 Mi memory
2023-07-05 13:26:49.972845: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270418v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:49.977222: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270418v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0039 seconds and 3.7 Mi memory
2023-07-05 13:26:49.981567: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9475 seconds and 3.7 Mi memory
2023-07-05 13:26:49.983116: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270391v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:49.989754: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270391v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0062 seconds and 3.0 Mi memory
2023-07-05 13:26:49.989872: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270391v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:49.994154: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270391v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0038 seconds and 3.7 Mi memory
2023-07-05 13:26:49.999927: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270548v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:50.005270: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270548v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0049 seconds and 3.1 Mi memory
2023-07-05 13:26:50.005388: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270548v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:50.012133: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270548v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0063 seconds and 3.7 Mi memory
2023-07-05 13:26:50.043279: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr1_KI270710v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:50.051319: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr1_KI270710v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0076 seconds and 3.0 Mi memory
2023-07-05 13:26:50.051442: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr1_KI270710v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:50.055766: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr1_KI270710v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0039 seconds and 3.7 Mi memory
2023-07-05 13:26:50.093791: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr5.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:50.227529: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:50.331650: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.5703 seconds and 49.7 Mi memory
2023-07-05 13:26:50.332045: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:50.758700: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6681 seconds and 54.5 Mi memory
2023-07-05 13:26:50.758998: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:51.037884: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1737 seconds and 3.8 Mi memory
2023-07-05 13:26:51.079968: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7374 seconds and 3.7 Mi memory
2023-07-05 13:26:51.192461: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8588 seconds and 75.5 Mi memory
2023-07-05 13:26:51.192692: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:51.217729: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:51.227159: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0084 seconds and 3.2 Mi memory
2023-07-05 13:26:51.227305: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:51.232135: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0044 seconds and 3.7 Mi memory
2023-07-05 13:26:51.233167: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8539 seconds and 128.5 Mi memory
2023-07-05 13:26:51.233419: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:51.242254: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:51.361340: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1566 seconds and 88.6 Mi memory
2023-07-05 13:26:51.361578: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:51.467119: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1734 seconds and 47.0 Mi memory
2023-07-05 13:26:51.467351: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:51.518171: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.3684 seconds and 58.3 Mi memory
2023-07-05 13:26:51.518565: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:51.522639: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:51.607739: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9755 seconds and 67.6 Mi memory
2023-07-05 13:26:51.607980: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:51.651072: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.0557 seconds and 49.8 Mi memory
2023-07-05 13:26:51.651296: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:51.716295: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7635 seconds and 3.7 Mi memory
2023-07-05 13:26:51.719029: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1512 seconds and 62.9 Mi memory
2023-07-05 13:26:51.719263: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:52.039128: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2793 seconds and 3.6 Mi memory
2023-07-05 13:26:52.063273: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.3526 seconds and 131.3 Mi memory
2023-07-05 13:26:52.063515: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:52.096933: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.5174 seconds and 74.9 Mi memory
2023-07-05 13:26:52.097420: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:52.131791: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1364 seconds and 56.5 Mi memory
2023-07-05 13:26:52.132048: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:52.135616: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.2649 seconds and 39.1 Mi memory
2023-07-05 13:26:52.136014: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:52.144790: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.0238 seconds and 75.7 Mi memory
2023-07-05 13:26:52.145026: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:52.182861: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8498 seconds and 3.7 Mi memory
2023-07-05 13:26:52.308922: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4499 seconds and 92.8 Mi memory
2023-07-05 13:26:52.309163: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:52.379154: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:52.385778: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:52.404076: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2107 seconds and 3.8 Mi memory
2023-07-05 13:26:52.435562: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:52.451915: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0149 seconds and 3.1 Mi memory
2023-07-05 13:26:52.452109: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:52.459566: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.007 seconds and 3.7 Mi memory
2023-07-05 13:26:52.525576: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2914 seconds and 3.7 Mi memory
2023-07-05 13:26:52.575120: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2127 seconds and 3.7 Mi memory
2023-07-05 13:26:52.644791: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.036 seconds and 3.8 Mi memory
2023-07-05 13:26:52.796195: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:52.820603: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3524 seconds and 3.8 Mi memory
2023-07-05 13:26:52.853384: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2013 seconds and 3.7 Mi memory
2023-07-05 13:26:52.869364: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3498 seconds and 3.7 Mi memory
2023-07-05 13:26:52.891977: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:52.931399: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:53.059637: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:53.122955: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:53.160108: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:53.185485: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0396 seconds and 3.8 Mi memory
2023-07-05 13:26:53.220492: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5003 seconds and 3.7 Mi memory
2023-07-05 13:26:53.284710: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:53.396997: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2599 seconds and 3.8 Mi memory
2023-07-05 13:26:53.401948: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.1664 seconds and 56.8 Mi memory
2023-07-05 13:26:53.402173: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:53.403928: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.6312 seconds and 106.5 Mi memory
2023-07-05 13:26:53.404156: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:53.419508: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3552 seconds and 3.7 Mi memory
2023-07-05 13:26:53.458634: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3258 seconds and 3.7 Mi memory
2023-07-05 13:26:53.466157: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1562 seconds and 3.7 Mi memory
2023-07-05 13:26:53.522506: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.6451 seconds and 147.2 Mi memory
2023-07-05 13:26:53.522748: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:53.715779: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:53.716243: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:53.762960: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:53.847798: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9732 seconds and 49.7 Mi memory
2023-07-05 13:26:53.848024: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:53.859170: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7606 seconds and 3.7 Mi memory
2023-07-05 13:26:53.875360: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:53.901459: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:53.930203: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:53.942022: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:54.007709: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.9448 seconds and 106.4 Mi memory
2023-07-05 13:26:54.008085: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:54.038187: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:54.048429: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.009 seconds and 3.1 Mi memory
2023-07-05 13:26:54.048590: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:54.053982: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0049 seconds and 3.7 Mi memory
2023-07-05 13:26:54.253656: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:54.463832: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.204 seconds and 50.8 Mi memory
2023-07-05 13:26:54.464112: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:54.479240: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.406 seconds and 91.0 Mi memory
2023-07-05 13:26:54.479480: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:54.695042: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2738 seconds and 126.5 Mi memory
2023-07-05 13:26:54.695322: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:54.838136: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8089 seconds and 64.0 Mi memory
2023-07-05 13:26:54.838544: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:55.012918: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4892 seconds and 3.8 Mi memory
2023-07-05 13:26:55.082368: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9503 seconds and 61.7 Mi memory
2023-07-05 13:26:55.082614: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:55.134750: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7296 seconds and 3.8 Mi memory
2023-07-05 13:26:55.162319: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:55.168849: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0057 seconds and 3.1 Mi memory
2023-07-05 13:26:55.168987: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:55.174103: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0046 seconds and 3.8 Mi memory
2023-07-05 13:26:55.230671: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3818 seconds and 3.8 Mi memory
2023-07-05 13:26:55.304968: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9018 seconds and 3.7 Mi memory
2023-07-05 13:26:55.535550: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:55.579631: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:55.592502: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0116 seconds and 2.9 Mi memory
2023-07-05 13:26:55.592654: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:55.597388: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0042 seconds and 3.6 Mi memory
2023-07-05 13:26:55.661008: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:55.715413: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7064 seconds and 3.7 Mi memory
2023-07-05 13:26:55.824599: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:55.831406: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9918 seconds and 3.6 Mi memory
2023-07-05 13:26:55.880275: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6039 seconds and 103.6 Mi memory
2023-07-05 13:26:55.880502: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:55.914700: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8387 seconds and 47.6 Mi memory
2023-07-05 13:26:55.914965: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:55.919600: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:55.928337: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0076 seconds and 3.0 Mi memory
2023-07-05 13:26:55.928478: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:55.933510: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0046 seconds and 3.8 Mi memory
2023-07-05 13:26:56.026496: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.855 seconds and 105.2 Mi memory
2023-07-05 13:26:56.026728: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:56.053069: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9696 seconds and 3.7 Mi memory
2023-07-05 13:26:56.061338: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5811 seconds and 3.7 Mi memory
2023-07-05 13:26:56.101117: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:56.242153: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:56.297131: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8321 seconds and 3.6 Mi memory
2023-07-05 13:26:56.361026: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:56.424714: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8313 seconds and 123.8 Mi memory
2023-07-05 13:26:56.424933: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:56.426191: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:56.492352: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:56.506876: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8107 seconds and 3.7 Mi memory
2023-07-05 13:26:56.693562: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6435 seconds and 128.2 Mi memory
2023-07-05 13:26:56.693804: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:56.909270: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:57.041886: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:57.075962: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.4579 seconds and 90.8 Mi memory
2023-07-05 13:26:57.076211: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:57.153726: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2724 seconds and 3.8 Mi memory
2023-07-05 13:26:57.281483: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3657 seconds and 3.7 Mi memory
2023-07-05 13:26:57.399514: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9739 seconds and 3.8 Mi memory
2023-07-05 13:26:57.400417: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:57.419640: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8733 seconds and 46.2 Mi memory
2023-07-05 13:26:57.419885: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:57.505499: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.478 seconds and 3.9 Mi memory
2023-07-05 13:26:57.693346: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:57.804323: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1097 seconds and 3.8 Mi memory
2023-07-05 13:26:57.858286: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:57.995649: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:58.092081: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.5986 seconds and 14.7 Mi memory
2023-07-05 13:26:58.092425: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:58.122352: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:58.359307: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9387 seconds and 3.7 Mi memory
2023-07-05 13:26:58.453866: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7029 seconds and 64.7 Mi memory
2023-07-05 13:26:58.454147: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:58.455262: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.362 seconds and 3.8 Mi memory
2023-07-05 13:26:58.464185: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6388 seconds and 57.6 Mi memory
2023-07-05 13:26:58.464461: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:58.564576: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:58.644099: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:58.659996: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6091 seconds and 44.1 Mi memory
2023-07-05 13:26:58.660365: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:58.772300: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6952 seconds and 3.6 Mi memory
2023-07-05 13:26:58.801850: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.7214 seconds and 105.0 Mi memory
2023-07-05 13:26:58.802100: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:58.894635: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:59.000505: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.4078 seconds and 66.3 Mi memory
2023-07-05 13:26:59.000857: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:59.095926: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1319 seconds and 49.8 Mi memory
2023-07-05 13:26:59.096176: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:59.097465: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.1006 seconds and 11.9 Mi memory
2023-07-05 13:26:59.097686: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:59.195703: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.4435 seconds and 71.5 Mi memory
2023-07-05 13:26:59.196036: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:59.314551: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2161 seconds and 3.7 Mi memory
2023-07-05 13:26:59.369492: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:59.400340: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9454 seconds and 3.8 Mi memory
2023-07-05 13:26:59.493525: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7677 seconds and 71.4 Mi memory
2023-07-05 13:26:59.493820: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:59.510412: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0451 seconds and 3.8 Mi memory
2023-07-05 13:26:59.525301: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.9301 seconds and 74.0 Mi memory
2023-07-05 13:26:59.525541: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:59.541787: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:59.727098: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.8035 seconds and 69.7 Mi memory
2023-07-05 13:26:59.727386: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:26:59.786392: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:26:59.994716: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.0109 seconds and 71.9 Mi memory
2023-07-05 13:26:59.995021: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:00.017939: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.9236 seconds and 107.2 Mi memory
2023-07-05 13:27:00.018214: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:00.028473: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3671 seconds and 3.7 Mi memory
2023-07-05 13:27:00.095398: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0937 seconds and 3.7 Mi memory
2023-07-05 13:27:00.264942: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:00.313691: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:00.323060: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.226 seconds and 3.7 Mi memory
2023-07-05 13:27:00.416678: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.0331 seconds and 53.1 Mi memory
2023-07-05 13:27:00.416957: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:00.553041: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:00.617133: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.9037 seconds and 93.0 Mi memory
2023-07-05 13:27:00.617415: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:00.696219: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8932 seconds and 3.7 Mi memory
2023-07-05 13:27:00.748268: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.865 seconds and 106.9 Mi memory
2023-07-05 13:27:00.748543: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:00.818604: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3236 seconds and 3.8 Mi memory
2023-07-05 13:27:00.839849: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.1916 seconds and 142.9 Mi memory
2023-07-05 13:27:00.840131: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:00.862149: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.0419 seconds and 53.4 Mi memory
2023-07-05 13:27:00.862403: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:01.000264: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:01.082649: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.8286 seconds and 81.1 Mi memory
2023-07-05 13:27:01.082941: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:01.143137: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.3514 seconds and 80.5 Mi memory
2023-07-05 13:27:01.143437: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:01.163318: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:01.245099: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7188 seconds and 3.8 Mi memory
2023-07-05 13:27:01.421618: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.9103 seconds and 72.3 Mi memory
2023-07-05 13:27:01.421997: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:01.431200: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9077 seconds and 100.1 Mi memory
2023-07-05 13:27:01.431420: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:01.441263: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2552 seconds and 80.7 Mi memory
2023-07-05 13:27:01.441543: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:01.446344: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.5507 seconds and 20.1 Mi memory
2023-07-05 13:27:01.446580: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:01.493450: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2965 seconds and 3.7 Mi memory
2023-07-05 13:27:01.504771: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7764 seconds and 3.6 Mi memory
2023-07-05 13:27:01.520606: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:01.614540: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.16 seconds and 56.7 Mi memory
2023-07-05 13:27:01.614823: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:01.618201: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.617 seconds and 6.7 Mi memory
2023-07-05 13:27:01.618435: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:01.723813: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7277 seconds and 3.8 Mi memory
2023-07-05 13:27:01.746391: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.299 seconds and 3.8 Mi memory
2023-07-05 13:27:01.752952: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.1337 seconds and 3.8 Mi memory
2023-07-05 13:27:01.825270: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:01.847821: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.3997 seconds and 100.6 Mi memory
2023-07-05 13:27:01.848106: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:01.880383: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:01.917409: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:01.925615: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0072 seconds and 3.0 Mi memory
2023-07-05 13:27:01.925773: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:01.931751: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0054 seconds and 3.7 Mi memory
2023-07-05 13:27:01.934542: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:01.969569: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9504 seconds and 3.7 Mi memory
2023-07-05 13:27:02.033861: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6159 seconds and 3.6 Mi memory
2023-07-05 13:27:02.199184: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5809 seconds and 3.7 Mi memory
2023-07-05 13:27:02.237258: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:02.320201: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9377 seconds and 66.1 Mi memory
2023-07-05 13:27:02.320455: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:02.334440: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:02.346759: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0107 seconds and 3.0 Mi memory
2023-07-05 13:27:02.346943: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:02.352131: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0047 seconds and 3.7 Mi memory
2023-07-05 13:27:02.356764: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:02.416936: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.9626 seconds and 99.1 Mi memory
2023-07-05 13:27:02.417197: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:02.462972: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chrUn_KI270751v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:02.488373: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chrUn_KI270751v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0242 seconds and 2.9 Mi memory
2023-07-05 13:27:02.488584: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chrUn_KI270751v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:02.495192: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chrUn_KI270751v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.006 seconds and 3.8 Mi memory
2023-07-05 13:27:02.589467: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2481 seconds and 66.8 Mi memory
2023-07-05 13:27:02.589744: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:02.609129: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.4578 seconds and 45.6 Mi memory
2023-07-05 13:27:02.609392: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:02.612906: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8635 seconds and 3.7 Mi memory
2023-07-05 13:27:02.616789: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr9_KI270719v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:02.631411: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr9_KI270719v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0138 seconds and 3.0 Mi memory
2023-07-05 13:27:02.631560: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr9_KI270719v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:02.638219: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr9_KI270719v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0061 seconds and 3.7 Mi memory
2023-07-05 13:27:02.679968: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:02.692798: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2606 seconds and 3.7 Mi memory
2023-07-05 13:27:02.758233: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.917 seconds and 3.7 Mi memory
2023-07-05 13:27:02.808511: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9156 seconds and 42.1 Mi memory
2023-07-05 13:27:02.808795: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:02.963304: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8189 seconds and 3.7 Mi memory
2023-07-05 13:27:02.972491: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:02.991607: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:02.993677: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1303 seconds and 3.7 Mi memory
2023-07-05 13:27:03.001404: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0086 seconds and 3.1 Mi memory
2023-07-05 13:27:03.001547: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:03.006599: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0046 seconds and 3.8 Mi memory
2023-07-05 13:27:03.053082: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9693 seconds and 3.7 Mi memory
2023-07-05 13:27:03.067715: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:03.166105: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:03.218046: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:03.231562: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.012 seconds and 3.0 Mi memory
2023-07-05 13:27:03.231752: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:03.237076: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0048 seconds and 3.7 Mi memory
2023-07-05 13:27:03.319625: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8965 seconds and 3.7 Mi memory
2023-07-05 13:27:03.362357: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:03.379982: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0165 seconds and 3.1 Mi memory
2023-07-05 13:27:03.380171: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:03.381440: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:03.386504: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0055 seconds and 3.7 Mi memory
2023-07-05 13:27:03.391108: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr5.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.2966 seconds and 174.9 Mi memory
2023-07-05 13:27:03.391382: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr5.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:03.392966: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0105 seconds and 3.0 Mi memory
2023-07-05 13:27:03.393132: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:03.398382: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0047 seconds and 3.8 Mi memory
2023-07-05 13:27:03.434829: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:03.483133: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8672 seconds and 3.7 Mi memory
2023-07-05 13:27:03.491939: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0496 seconds and 3.8 Mi memory
2023-07-05 13:27:03.555702: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:03.615125: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:03.629996: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0133 seconds and 3.1 Mi memory
2023-07-05 13:27:03.630136: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:03.635355: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0047 seconds and 3.7 Mi memory
2023-07-05 13:27:03.742853: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:03.749314: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9003 seconds and 3.7 Mi memory
2023-07-05 13:27:03.811182: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4899 seconds and 3.7 Mi memory
2023-07-05 13:27:03.833821: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:03.847137: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0117 seconds and 3.1 Mi memory
2023-07-05 13:27:03.847402: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:03.852251: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0043 seconds and 3.8 Mi memory
2023-07-05 13:27:03.857393: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0478 seconds and 3.7 Mi memory
2023-07-05 13:27:03.879532: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:03.893522: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0128 seconds and 3.1 Mi memory
2023-07-05 13:27:03.893681: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:03.899768: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0056 seconds and 3.8 Mi memory
2023-07-05 13:27:03.953333: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.0165 seconds and 17.2 Mi memory
2023-07-05 13:27:03.953570: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:03.953638: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:03.965364: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:04.058131: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6399 seconds and 3.8 Mi memory
2023-07-05 13:27:04.112596: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8579 seconds and 66.8 Mi memory
2023-07-05 13:27:04.112848: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:04.205194: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6145 seconds and 3.8 Mi memory
2023-07-05 13:27:04.262180: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:04.304760: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6944 seconds and 3.8 Mi memory
2023-07-05 13:27:04.338188: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.0948 seconds and 74.8 Mi memory
2023-07-05 13:27:04.338435: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:04.340807: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:04.398490: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:04.409713: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:04.413059: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.013 seconds and 3.0 Mi memory
2023-07-05 13:27:04.413286: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:04.423017: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0088 seconds and 3.7 Mi memory
2023-07-05 13:27:04.443089: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4887 seconds and 3.8 Mi memory
2023-07-05 13:27:04.485598: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:04.494122: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.7757 seconds and 41.8 Mi memory
2023-07-05 13:27:04.494479: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:04.508606: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:04.534152: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:04.544208: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:04.554867: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0095 seconds and 3.0 Mi memory
2023-07-05 13:27:04.555047: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:04.560099: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0046 seconds and 3.7 Mi memory
2023-07-05 13:27:04.571463: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:04.807457: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:04.814334: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:04.838383: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:04.876272: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.6477 seconds and 91.3 Mi memory
2023-07-05 13:27:04.876519: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:05.028625: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.5071 seconds and 15.0 Mi memory
2023-07-05 13:27:05.028873: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:05.047537: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.511 seconds and 58.8 Mi memory
2023-07-05 13:27:05.047784: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:05.191816: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0782 seconds and 3.8 Mi memory
2023-07-05 13:27:05.242823: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr5.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8506 seconds and 3.7 Mi memory
2023-07-05 13:27:05.341452: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270310v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:05.349545: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270310v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0071 seconds and 2.9 Mi memory
2023-07-05 13:27:05.349688: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270310v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:05.354296: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270310v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0041 seconds and 3.7 Mi memory
2023-07-05 13:27:05.400722: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr2_KI270716v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:05.409229: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr2_KI270716v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.008 seconds and 3.0 Mi memory
2023-07-05 13:27:05.409358: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr2_KI270716v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:05.414090: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr2_KI270716v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0043 seconds and 3.8 Mi memory
2023-07-05 13:27:05.458032: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270329v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:05.462843: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270329v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0043 seconds and 3.1 Mi memory
2023-07-05 13:27:05.462977: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270329v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:05.467531: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270329v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0041 seconds and 3.8 Mi memory
2023-07-05 13:27:05.471020: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:05.490652: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrM.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:05.498071: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrM.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0068 seconds and 3.1 Mi memory
2023-07-05 13:27:05.498199: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrM.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:05.503401: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrM.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0045 seconds and 3.7 Mi memory
2023-07-05 13:27:05.521740: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270584v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:05.524236: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6983 seconds and 55.7 Mi memory
2023-07-05 13:27:05.524589: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:05.526361: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270584v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0042 seconds and 3.1 Mi memory
2023-07-05 13:27:05.526481: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270584v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:05.531798: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270584v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0049 seconds and 3.7 Mi memory
2023-07-05 13:27:05.545830: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270751v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:05.568493: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270751v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0222 seconds and 2.9 Mi memory
2023-07-05 13:27:05.568648: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270751v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:05.573951: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270751v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0048 seconds and 3.7 Mi memory
2023-07-05 13:27:05.581001: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr14_GL000225v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:05.584730: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.4229 seconds and 93.1 Mi memory
2023-07-05 13:27:05.585090: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:05.595864: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr14_GL000225v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0144 seconds and 3.1 Mi memory
2023-07-05 13:27:05.595998: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr14_GL000225v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:05.602221: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr14_GL000225v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0058 seconds and 3.7 Mi memory
2023-07-05 13:27:05.608269: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270748v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:05.618864: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270748v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0101 seconds and 3.1 Mi memory
2023-07-05 13:27:05.619236: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270748v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:05.623817: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.594 seconds and 3.7 Mi memory
2023-07-05 13:27:05.624406: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270748v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0047 seconds and 3.7 Mi memory
2023-07-05 13:27:05.641833: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270381v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:05.650958: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270381v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0086 seconds and 3.0 Mi memory
2023-07-05 13:27:05.651086: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270381v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:05.655608: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270381v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0041 seconds and 3.7 Mi memory
2023-07-05 13:27:05.690097: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270741v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:05.703427: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270741v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0129 seconds and 3.0 Mi memory
2023-07-05 13:27:05.703554: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270741v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:05.708682: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270741v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0047 seconds and 3.7 Mi memory
2023-07-05 13:27:05.711281: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:05.730750: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr9_KI270719v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:05.748665: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr9_KI270719v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0173 seconds and 3.0 Mi memory
2023-07-05 13:27:05.748805: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr9_KI270719v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:05.754525: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr9_KI270719v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0052 seconds and 3.7 Mi memory
2023-07-05 13:27:05.773491: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr14_KI270725v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:05.790580: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr14_KI270725v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0166 seconds and 3.0 Mi memory
2023-07-05 13:27:05.790713: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr14_KI270725v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:05.796438: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr14_KI270725v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0052 seconds and 3.8 Mi memory
2023-07-05 13:27:05.811736: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_GL000216v2.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:05.821469: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3259 seconds and 3.8 Mi memory
2023-07-05 13:27:05.828230: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_GL000216v2.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.016 seconds and 3.0 Mi memory
2023-07-05 13:27:05.828361: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_GL000216v2.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:05.833756: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_GL000216v2.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0049 seconds and 3.8 Mi memory
2023-07-05 13:27:05.852464: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270420v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:05.857645: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270420v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0047 seconds and 2.9 Mi memory
2023-07-05 13:27:05.857769: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270420v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:05.866656: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270420v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0084 seconds and 3.8 Mi memory
2023-07-05 13:27:05.889831: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270419v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:05.904560: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270419v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.014 seconds and 3.0 Mi memory
2023-07-05 13:27:05.904700: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270419v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:05.908548: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5693 seconds and 3.7 Mi memory
2023-07-05 13:27:05.911902: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270419v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0068 seconds and 3.7 Mi memory
2023-07-05 13:27:05.941314: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.839 seconds and 65.2 Mi memory
2023-07-05 13:27:05.941682: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:05.952676: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr22_KI270731v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:05.967845: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr22_KI270731v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0146 seconds and 3.1 Mi memory
2023-07-05 13:27:05.967974: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr22_KI270731v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:05.976413: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr22_KI270731v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0079 seconds and 3.6 Mi memory
2023-07-05 13:27:06.029026: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270315v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:06.034563: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270315v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0049 seconds and 3.1 Mi memory
2023-07-05 13:27:06.034698: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270315v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:06.039007: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270315v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0038 seconds and 3.7 Mi memory
2023-07-05 13:27:06.042727: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:06.078617: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270519v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:06.090074: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270519v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0107 seconds and 3.1 Mi memory
2023-07-05 13:27:06.090210: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270519v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:06.095399: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270519v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0047 seconds and 3.7 Mi memory
2023-07-05 13:27:06.141431: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr10.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:06.199344: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:06.228204: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1795 seconds and 3.7 Mi memory
2023-07-05 13:27:06.239038: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.877 seconds and 110.4 Mi memory
2023-07-05 13:27:06.239297: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:06.480219: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:06.608252: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0826 seconds and 3.8 Mi memory
2023-07-05 13:27:06.653236: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.61 seconds and 50.7 Mi memory
2023-07-05 13:27:06.653516: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:06.793700: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9164 seconds and 3.8 Mi memory
2023-07-05 13:27:06.817233: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9066 seconds and 32.5 Mi memory
2023-07-05 13:27:06.817512: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:06.838756: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:06.926376: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3403 seconds and 3.7 Mi memory
2023-07-05 13:27:07.011447: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.6245 seconds and 57.8 Mi memory
2023-07-05 13:27:07.011732: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:07.218039: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2754 seconds and 3.8 Mi memory
2023-07-05 13:27:07.296541: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:07.362084: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:07.415394: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1752 seconds and 3.7 Mi memory
2023-07-05 13:27:07.481396: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.3573 seconds and 103.9 Mi memory
2023-07-05 13:27:07.481769: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:07.545252: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.4845 seconds and 90.2 Mi memory
2023-07-05 13:27:07.545499: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:07.611253: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.8139 seconds and 93.3 Mi memory
2023-07-05 13:27:07.611492: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:07.683669: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8576 seconds and 54.2 Mi memory
2023-07-05 13:27:07.683909: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:07.689852: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0355 seconds and 3.8 Mi memory
2023-07-05 13:27:07.761108: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9427 seconds and 3.8 Mi memory
2023-07-05 13:27:07.791473: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:07.803355: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.5174 seconds and 69.7 Mi memory
2023-07-05 13:27:07.803824: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:07.818147: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:07.901133: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.9686 seconds and 91.3 Mi memory
2023-07-05 13:27:07.901403: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:08.015383: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.2513 seconds and 69.9 Mi memory
2023-07-05 13:27:08.015621: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:08.105626: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:08.186468: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:08.282736: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7174 seconds and 60.6 Mi memory
2023-07-05 13:27:08.282997: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:08.382660: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.6657 seconds and 86.9 Mi memory
2023-07-05 13:27:08.382910: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:08.408279: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.5056 seconds and 89.8 Mi memory
2023-07-05 13:27:08.415114: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:08.524311: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.1609 seconds and 8.3 Mi memory
2023-07-05 13:27:08.524551: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:08.630099: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.6989 seconds and 90.0 Mi memory
2023-07-05 13:27:08.630363: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:08.645528: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.7026 seconds and 100.3 Mi memory
2023-07-05 13:27:08.645730: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:08.653680: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9691 seconds and 3.6 Mi memory
2023-07-05 13:27:08.731664: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:08.759570: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2342 seconds and 3.8 Mi memory
2023-07-05 13:27:08.805393: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.7617 seconds and 10.4 Mi memory
2023-07-05 13:27:08.805726: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:08.816357: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:08.961960: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9494 seconds and 3.7 Mi memory
2023-07-05 13:27:08.992159: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.1153 seconds and 58.0 Mi memory
2023-07-05 13:27:08.992412: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:09.174178: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3676 seconds and 3.8 Mi memory
2023-07-05 13:27:09.203671: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:09.233540: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:09.293136: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9228 seconds and 48.2 Mi memory
2023-07-05 13:27:09.293505: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:09.505724: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9594 seconds and 3.6 Mi memory
2023-07-05 13:27:09.519437: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0367 seconds and 3.8 Mi memory
2023-07-05 13:27:09.531819: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9196 seconds and 3.7 Mi memory
2023-07-05 13:27:09.657659: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7554 seconds and 3.7 Mi memory
2023-07-05 13:27:09.706486: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4227 seconds and 3.7 Mi memory
2023-07-05 13:27:09.746491: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7302 seconds and 3.7 Mi memory
2023-07-05 13:27:09.929046: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:09.941583: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.1369 seconds and 3.7 Mi memory
2023-07-05 13:27:10.054362: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:10.064788: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:10.100731: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:10.143279: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.8454 seconds and 33.1 Mi memory
2023-07-05 13:27:10.143515: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:10.150395: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7345 seconds and 3.8 Mi memory
2023-07-05 13:27:10.163025: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:10.228894: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:10.317924: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6715 seconds and 3.7 Mi memory
2023-07-05 13:27:10.360202: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0657 seconds and 3.7 Mi memory
2023-07-05 13:27:10.379186: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:10.428659: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7975 seconds and 3.8 Mi memory
2023-07-05 13:27:10.432394: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2882 seconds and 3.7 Mi memory
2023-07-05 13:27:10.483503: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.8213 seconds and 59.5 Mi memory
2023-07-05 13:27:10.483743: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:10.511449: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:10.589385: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2056 seconds and 3.7 Mi memory
2023-07-05 13:27:10.592334: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:10.629876: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.4247 seconds and 10.2 Mi memory
2023-07-05 13:27:10.630272: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:10.643254: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:10.675408: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6822 seconds and 3.8 Mi memory
2023-07-05 13:27:10.870525: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:10.892399: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2611 seconds and 3.7 Mi memory
2023-07-05 13:27:10.957652: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:10.995714: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.7524 seconds and 57.1 Mi memory
2023-07-05 13:27:10.995959: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:11.039621: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:11.090827: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:11.101938: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:11.341014: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.9137 seconds and 102.6 Mi memory
2023-07-05 13:27:11.341254: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:11.350407: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.2948 seconds and 18.7 Mi memory
2023-07-05 13:27:11.350756: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:11.552897: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.6814 seconds and 8.6 Mi memory
2023-07-05 13:27:11.553132: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:11.579394: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2277 seconds and 3.6 Mi memory
2023-07-05 13:27:11.640573: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:11.649148: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0953 seconds and 3.8 Mi memory
2023-07-05 13:27:11.713088: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.6473 seconds and 15.2 Mi memory
2023-07-05 13:27:11.713457: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:11.723487: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:11.943860: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.7796 seconds and 14.3 Mi memory
2023-07-05 13:27:11.944137: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:11.958702: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.5565 seconds and 107.8 Mi memory
2023-07-05 13:27:11.958958: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:11.974835: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.0937 seconds and 51.9 Mi memory
2023-07-05 13:27:11.975099: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:12.024358: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.31 seconds and 3.8 Mi memory
2023-07-05 13:27:12.049304: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.8191 seconds and 26.4 Mi memory
2023-07-05 13:27:12.049746: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:12.071154: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.832 seconds and 57.6 Mi memory
2023-07-05 13:27:12.071572: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:12.084442: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.9924 seconds and 8.3 Mi memory
2023-07-05 13:27:12.084799: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:12.090440: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:12.118656: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.7382 seconds and 11.1 Mi memory
2023-07-05 13:27:12.119032: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:12.121876: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.4767 seconds and 17.5 Mi memory
2023-07-05 13:27:12.122085: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:12.167585: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.0653 seconds and 20.9 Mi memory
2023-07-05 13:27:12.167823: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:12.243059: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2981 seconds and 3.7 Mi memory
2023-07-05 13:27:12.275853: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.5813 seconds and 59.4 Mi memory
2023-07-05 13:27:12.276094: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:12.278849: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.921 seconds and 129.8 Mi memory
2023-07-05 13:27:12.279259: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:12.286886: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2012 seconds and 3.8 Mi memory
2023-07-05 13:27:12.322871: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:12.360447: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6794 seconds and 123.8 Mi memory
2023-07-05 13:27:12.360734: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:12.363528: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:12.388325: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.5288 seconds and 69.9 Mi memory
2023-07-05 13:27:12.388581: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:12.432447: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4356 seconds and 3.7 Mi memory
2023-07-05 13:27:12.454471: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3316 seconds and 3.8 Mi memory
2023-07-05 13:27:12.463201: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.3602 seconds and 13.1 Mi memory
2023-07-05 13:27:12.463439: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:12.482162: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4316 seconds and 3.7 Mi memory
2023-07-05 13:27:12.487834: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0032 seconds and 3.7 Mi memory
2023-07-05 13:27:12.532349: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4125 seconds and 3.7 Mi memory
2023-07-05 13:27:12.567597: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:12.613761: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6403 seconds and 86.2 Mi memory
2023-07-05 13:27:12.614047: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:12.618700: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:12.672692: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.504 seconds and 3.8 Mi memory
2023-07-05 13:27:12.696519: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.5733 seconds and 56.8 Mi memory
2023-07-05 13:27:12.696742: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:12.699842: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:12.731383: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2672 seconds and 3.8 Mi memory
2023-07-05 13:27:12.733047: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:12.817794: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.8589 seconds and 21.5 Mi memory
2023-07-05 13:27:12.818033: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:12.825367: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7564 seconds and 67.1 Mi memory
2023-07-05 13:27:12.825755: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:12.868822: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:12.875775: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:12.887369: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:12.953727: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6114 seconds and 3.8 Mi memory
2023-07-05 13:27:13.009013: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.4522 seconds and 73.6 Mi memory
2023-07-05 13:27:13.009296: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:13.080253: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1044 seconds and 3.8 Mi memory
2023-07-05 13:27:13.133983: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3152 seconds and 3.8 Mi memory
2023-07-05 13:27:13.151303: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7155 seconds and 60.7 Mi memory
2023-07-05 13:27:13.151579: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:13.262783: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:13.308135: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.6632 seconds and 88.7 Mi memory
2023-07-05 13:27:13.308372: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:13.322227: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:13.330798: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:13.372855: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0924 seconds and 3.7 Mi memory
2023-07-05 13:27:13.457148: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0954 seconds and 3.9 Mi memory
2023-07-05 13:27:13.596880: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5243 seconds and 3.8 Mi memory
2023-07-05 13:27:13.605647: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8615 seconds and 85.7 Mi memory
2023-07-05 13:27:13.606015: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:13.710839: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:13.744743: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7783 seconds and 68.1 Mi memory
2023-07-05 13:27:13.745025: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:13.811597: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1965 seconds and 3.7 Mi memory
2023-07-05 13:27:13.835069: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0082 seconds and 3.8 Mi memory
2023-07-05 13:27:13.848335: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5712 seconds and 3.7 Mi memory
2023-07-05 13:27:13.848477: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:13.939002: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9793 seconds and 3.8 Mi memory
2023-07-05 13:27:13.941099: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5517 seconds and 3.8 Mi memory
2023-07-05 13:27:13.981436: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.0267 seconds and 81.2 Mi memory
2023-07-05 13:27:13.981694: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:14.031770: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.6997 seconds and 7.2 Mi memory
2023-07-05 13:27:14.032125: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:14.064139: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:14.136587: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.1036 seconds and 3.7 Mi memory
2023-07-05 13:27:14.154862: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8913 seconds and 84.5 Mi memory
2023-07-05 13:27:14.155173: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:14.244118: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:14.364655: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.8219 seconds and 102.7 Mi memory
2023-07-05 13:27:14.364932: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:14.364929: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6674 seconds and 3.7 Mi memory
2023-07-05 13:27:14.385193: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:14.388628: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8789 seconds and 48.7 Mi memory
2023-07-05 13:27:14.388930: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:14.406815: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:14.453565: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:14.459041: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3063 seconds and 3.8 Mi memory
2023-07-05 13:27:14.496728: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4864 seconds and 3.6 Mi memory
2023-07-05 13:27:14.499674: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:14.504938: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:14.557516: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.0707 seconds and 44.1 Mi memory
2023-07-05 13:27:14.557883: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:14.701732: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.9143 seconds and 52.4 Mi memory
2023-07-05 13:27:14.701992: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:14.707536: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1352 seconds and 105.4 Mi memory
2023-07-05 13:27:14.707818: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:14.711700: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1768 seconds and 51.4 Mi memory
2023-07-05 13:27:14.711954: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:14.748508: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9396 seconds and 65.5 Mi memory
2023-07-05 13:27:14.748896: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:14.753638: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.8833 seconds and 10.1 Mi memory
2023-07-05 13:27:14.753825: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:14.784995: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4759 seconds and 3.7 Mi memory
2023-07-05 13:27:14.933456: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:14.938514: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:14.963032: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2169 seconds and 3.8 Mi memory
2023-07-05 13:27:14.964075: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1247 seconds and 43.6 Mi memory
2023-07-05 13:27:14.964349: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:15.001174: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:15.022124: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.2064 seconds and 75.3 Mi memory
2023-07-05 13:27:15.022411: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:15.022537: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2678 seconds and 3.8 Mi memory
2023-07-05 13:27:15.058112: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4508 seconds and 3.7 Mi memory
2023-07-05 13:27:15.149418: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:15.159250: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1766 seconds and 3.6 Mi memory
2023-07-05 13:27:15.199605: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chrEBV.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:15.201202: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.9351 seconds and 52.4 Mi memory
2023-07-05 13:27:15.201442: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:15.219893: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chrEBV.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0194 seconds and 3.1 Mi memory
2023-07-05 13:27:15.220051: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chrEBV.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:15.229179: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chrEBV.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0086 seconds and 3.8 Mi memory
2023-07-05 13:27:15.281715: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.9672 seconds and 104.9 Mi memory
2023-07-05 13:27:15.281941: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:15.374847: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:15.419968: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:15.470897: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3147 seconds and 3.7 Mi memory
2023-07-05 13:27:15.543140: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1533 seconds and 3.8 Mi memory
2023-07-05 13:27:15.546392: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:15.591660: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr10.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.4495 seconds and 129.2 Mi memory
2023-07-05 13:27:15.591935: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr10.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:15.624369: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.3898 seconds and 32.4 Mi memory
2023-07-05 13:27:15.624530: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:15.624726: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:15.689467: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9773 seconds and 114.5 Mi memory
2023-07-05 13:27:15.689706: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:15.690490: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1316 seconds and 3.8 Mi memory
2023-07-05 13:27:15.703825: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.2493 seconds and 12.1 Mi memory
2023-07-05 13:27:15.704070: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:15.849231: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:15.880132: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1713 seconds and 3.8 Mi memory
2023-07-05 13:27:15.892178: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1794 seconds and 3.8 Mi memory
2023-07-05 13:27:15.894416: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.1896 seconds and 3.8 Mi memory
2023-07-05 13:27:15.924645: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:15.971069: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.8057 seconds and 52.8 Mi memory
2023-07-05 13:27:15.971457: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:15.972912: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.0847 seconds and 20.1 Mi memory
2023-07-05 13:27:15.973160: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:16.009112: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.5027 seconds and 10.1 Mi memory
2023-07-05 13:27:16.009349: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:16.029981: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:16.045152: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.295 seconds and 3.6 Mi memory
2023-07-05 13:27:16.069374: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.5154 seconds and 107.5 Mi memory
2023-07-05 13:27:16.069618: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:16.136222: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:16.165108: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:16.186959: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:16.253015: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8871 seconds and 3.8 Mi memory
2023-07-05 13:27:16.254664: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2893 seconds and 3.8 Mi memory
2023-07-05 13:27:16.261611: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2516 seconds and 3.7 Mi memory
2023-07-05 13:27:16.399392: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:16.483336: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5095 seconds and 3.8 Mi memory
2023-07-05 13:27:16.526116: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:16.556345: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8533 seconds and 3.8 Mi memory
2023-07-05 13:27:16.588194: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5644 seconds and 3.7 Mi memory
2023-07-05 13:27:16.589323: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.0771 seconds and 52.4 Mi memory
2023-07-05 13:27:16.589564: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:16.639217: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:16.747379: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5451 seconds and 3.8 Mi memory
2023-07-05 13:27:16.795012: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1693 seconds and 3.7 Mi memory
2023-07-05 13:27:16.799983: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:16.809992: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:16.860145: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.8571 seconds and 12.0 Mi memory
2023-07-05 13:27:16.860503: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:16.925737: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:16.962464: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.272 seconds and 3.6 Mi memory
2023-07-05 13:27:17.012018: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:17.073331: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr10.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4804 seconds and 3.7 Mi memory
2023-07-05 13:27:17.084265: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:17.092421: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2308 seconds and 3.8 Mi memory
2023-07-05 13:27:17.199588: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270336v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:17.209478: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270336v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0086 seconds and 2.9 Mi memory
2023-07-05 13:27:17.209624: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270336v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:17.215799: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270336v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0056 seconds and 3.7 Mi memory
2023-07-05 13:27:17.218603: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:17.224425: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:17.232965: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6426 seconds and 3.6 Mi memory
2023-07-05 13:27:17.255817: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270335v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:17.262735: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270335v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0063 seconds and 3.0 Mi memory
2023-07-05 13:27:17.262865: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270335v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:17.268166: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270335v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0047 seconds and 3.8 Mi memory
2023-07-05 13:27:17.279306: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:17.299066: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270754v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:17.305655: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270754v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0061 seconds and 3.1 Mi memory
2023-07-05 13:27:17.305786: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270754v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:17.310173: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270754v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0039 seconds and 3.7 Mi memory
2023-07-05 13:27:17.348815: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:17.351752: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270465v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:17.353561: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0709 seconds and 3.7 Mi memory
2023-07-05 13:27:17.357122: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270465v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0049 seconds and 3.1 Mi memory
2023-07-05 13:27:17.357244: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270465v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:17.361411: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270465v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0037 seconds and 3.7 Mi memory
2023-07-05 13:27:17.376263: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270752v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:17.382820: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270752v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0061 seconds and 3.0 Mi memory
2023-07-05 13:27:17.382968: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270752v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:17.387524: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270752v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0041 seconds and 3.8 Mi memory
2023-07-05 13:27:17.404694: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270394v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:17.413891: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270394v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0087 seconds and 3.1 Mi memory
2023-07-05 13:27:17.414011: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270394v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:17.421151: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270394v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0067 seconds and 3.8 Mi memory
2023-07-05 13:27:17.452432: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270379v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:17.457089: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270379v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0042 seconds and 3.1 Mi memory
2023-07-05 13:27:17.457212: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270379v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:17.461801: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270379v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0042 seconds and 3.7 Mi memory
2023-07-05 13:27:17.477160: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270304v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:17.482650: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270304v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0049 seconds and 3.0 Mi memory
2023-07-05 13:27:17.482771: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270304v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:17.487317: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270304v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0041 seconds and 3.6 Mi memory
2023-07-05 13:27:17.527456: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.1517 seconds and 16.9 Mi memory
2023-07-05 13:27:17.527731: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270591v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:17.527797: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:17.533427: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270591v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0052 seconds and 3.0 Mi memory
2023-07-05 13:27:17.533550: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270591v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:17.538722: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270591v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0047 seconds and 3.8 Mi memory
2023-07-05 13:27:17.629413: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrY_KI270740v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:17.634550: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.4674 seconds and 88.2 Mi memory
2023-07-05 13:27:17.634813: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:17.638886: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrY_KI270740v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0085 seconds and 3.0 Mi memory
2023-07-05 13:27:17.639056: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrY_KI270740v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:17.645214: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrY_KI270740v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0054 seconds and 3.7 Mi memory
2023-07-05 13:27:17.660928: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5904 seconds and 3.6 Mi memory
2023-07-05 13:27:17.689542: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr3.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:17.710135: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:17.717771: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.9164 seconds and 11.9 Mi memory
2023-07-05 13:27:17.718040: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:17.806305: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.3052 seconds and 27.8 Mi memory
2023-07-05 13:27:17.806524: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:17.882438: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.1635 seconds and 3.7 Mi memory
2023-07-05 13:27:17.892568: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9199 seconds and 3.8 Mi memory
2023-07-05 13:27:17.905284: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3766 seconds and 3.7 Mi memory
2023-07-05 13:27:18.012151: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:18.043629: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:18.079914: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:18.202451: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.4699 seconds and 84.6 Mi memory
2023-07-05 13:27:18.202704: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:18.269570: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:18.421200: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6137 seconds and 3.7 Mi memory
2023-07-05 13:27:18.484532: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.2042 seconds and 10.3 Mi memory
2023-07-05 13:27:18.484888: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:18.493119: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:18.631269: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.5457 seconds and 17.3 Mi memory
2023-07-05 13:27:18.631537: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:18.673368: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.1875 seconds and 3.7 Mi memory
2023-07-05 13:27:18.732539: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:18.896479: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2641 seconds and 3.7 Mi memory
2023-07-05 13:27:18.929641: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1124 seconds and 129.8 Mi memory
2023-07-05 13:27:18.929884: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:18.971451: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:18.974029: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.6322 seconds and 55.2 Mi memory
2023-07-05 13:27:18.974321: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:19.017160: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.3061 seconds and 10.8 Mi memory
2023-07-05 13:27:19.017402: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:19.260219: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2419 seconds and 3.7 Mi memory
2023-07-05 13:27:19.321268: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.9093 seconds and 51.6 Mi memory
2023-07-05 13:27:19.321648: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:19.328072: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:19.328123: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.2471 seconds and 11.4 Mi memory
2023-07-05 13:27:19.328358: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:19.485832: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2824 seconds and 3.7 Mi memory
2023-07-05 13:27:19.609497: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:19.612886: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9772 seconds and 3.8 Mi memory
2023-07-05 13:27:19.676718: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3476 seconds and 3.7 Mi memory
2023-07-05 13:27:19.794715: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:19.883583: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.4115 seconds and 63.6 Mi memory
2023-07-05 13:27:19.883873: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:19.984947: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:20.133171: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2024 seconds and 3.8 Mi memory
2023-07-05 13:27:20.228681: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:20.668021: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6929 seconds and 3.6 Mi memory
2023-07-05 13:27:20.755235: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4327 seconds and 3.8 Mi memory
2023-07-05 13:27:20.813800: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.5426 seconds and 14.5 Mi memory
2023-07-05 13:27:20.814065: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:20.904476: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8639 seconds and 70.7 Mi memory
2023-07-05 13:27:20.904742: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:21.124842: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:21.151043: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:21.287228: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4723 seconds and 3.7 Mi memory
2023-07-05 13:27:21.308195: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.8269 seconds and 104.0 Mi memory
2023-07-05 13:27:21.308434: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:21.308466: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.1076 seconds and 52.1 Mi memory
2023-07-05 13:27:21.308735: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:21.324806: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:21.442947: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.4567 seconds and 11.7 Mi memory
2023-07-05 13:27:21.443230: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:21.684370: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2403 seconds and 3.7 Mi memory
2023-07-05 13:27:21.718120: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:21.870003: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9852 seconds and 3.8 Mi memory
2023-07-05 13:27:21.920908: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0151 seconds and 3.8 Mi memory
2023-07-05 13:27:22.105010: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4637 seconds and 52.1 Mi memory
2023-07-05 13:27:22.105276: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:22.112431: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.3881 seconds and 79.8 Mi memory
2023-07-05 13:27:22.112792: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:22.138318: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:22.199472: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:22.365051: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.5252 seconds and 106.8 Mi memory
2023-07-05 13:27:22.365291: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:22.382892: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.5904 seconds and 65.0 Mi memory
2023-07-05 13:27:22.383181: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:22.475886: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.3847 seconds and 60.7 Mi memory
2023-07-05 13:27:22.476123: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:22.490398: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.3641 seconds and 9.9 Mi memory
2023-07-05 13:27:22.490675: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:22.512791: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.189 seconds and 44.4 Mi memory
2023-07-05 13:27:22.513063: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:22.521658: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.3693 seconds and 22.5 Mi memory
2023-07-05 13:27:22.521947: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:22.700412: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2089 seconds and 3.8 Mi memory
2023-07-05 13:27:22.730167: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:22.790635: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2678 seconds and 3.8 Mi memory
2023-07-05 13:27:22.845231: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:22.935738: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6262 seconds and 3.7 Mi memory
2023-07-05 13:27:22.963850: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.2632 seconds and 57.3 Mi memory
2023-07-05 13:27:22.964091: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:22.982618: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.7948 seconds and 58.3 Mi memory
2023-07-05 13:27:22.982902: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:23.040757: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.9341 seconds and 82.8 Mi memory
2023-07-05 13:27:23.041024: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:23.053624: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6892 seconds and 65.8 Mi memory
2023-07-05 13:27:23.053986: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:23.110610: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 15.2914 seconds and 64.0 Mi memory
2023-07-05 13:27:23.110852: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:23.110973: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9971 seconds and 3.7 Mi memory
2023-07-05 13:27:23.128331: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.1983 seconds and 107.8 Mi memory
2023-07-05 13:27:23.128695: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:23.163400: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5437 seconds and 81.0 Mi memory
2023-07-05 13:27:23.163648: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:23.225562: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.3489 seconds and 51.2 Mi memory
2023-07-05 13:27:23.225915: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:23.248676: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9849 seconds and 60.8 Mi memory
2023-07-05 13:27:23.248892: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:23.282250: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5484 seconds and 60.9 Mi memory
2023-07-05 13:27:23.282508: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:23.352771: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:23.410652: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.8422 seconds and 61.6 Mi memory
2023-07-05 13:27:23.411038: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:23.412801: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:23.507623: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0308 seconds and 3.7 Mi memory
2023-07-05 13:27:23.545255: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.439 seconds and 3.7 Mi memory
2023-07-05 13:27:23.567010: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.053 seconds and 3.8 Mi memory
2023-07-05 13:27:23.580977: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.9879 seconds and 107.5 Mi memory
2023-07-05 13:27:23.581222: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:23.697671: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.3884 seconds and 3.7 Mi memory
2023-07-05 13:27:23.737168: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:23.769478: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:23.817474: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:23.881065: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4971 seconds and 3.6 Mi memory
2023-07-05 13:27:24.022220: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0573 seconds and 3.7 Mi memory
2023-07-05 13:27:24.058444: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:24.103813: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.049 seconds and 3.7 Mi memory
2023-07-05 13:27:24.172345: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:24.225761: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:24.240225: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:24.261418: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8953 seconds and 3.6 Mi memory
2023-07-05 13:27:24.340050: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1133 seconds and 3.7 Mi memory
2023-07-05 13:27:24.347857: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0982 seconds and 3.8 Mi memory
2023-07-05 13:27:24.373296: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.1726 seconds and 18.7 Mi memory
2023-07-05 13:27:24.373685: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:24.401680: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2371 seconds and 3.6 Mi memory
2023-07-05 13:27:24.494291: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5104 seconds and 3.7 Mi memory
2023-07-05 13:27:24.510574: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0986 seconds and 3.7 Mi memory
2023-07-05 13:27:24.538308: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4087 seconds and 3.8 Mi memory
2023-07-05 13:27:24.567855: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:24.570248: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.528 seconds and 3.8 Mi memory
2023-07-05 13:27:24.649501: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:24.716181: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3414 seconds and 3.7 Mi memory
2023-07-05 13:27:24.733777: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4505 seconds and 3.9 Mi memory
2023-07-05 13:27:24.737608: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4928 seconds and 63.5 Mi memory
2023-07-05 13:27:24.737829: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:24.759795: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:24.770286: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.7103 seconds and 9.9 Mi memory
2023-07-05 13:27:24.770620: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:24.803260: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:24.881012: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:24.888112: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7378 seconds and 72.5 Mi memory
2023-07-05 13:27:24.888258: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.474 seconds and 10.6 Mi memory
2023-07-05 13:27:24.888364: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:24.888503: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:24.888524: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:24.890566: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:24.900806: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.1292 seconds and 3.7 Mi memory
2023-07-05 13:27:24.993174: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4111 seconds and 3.7 Mi memory
2023-07-05 13:27:25.003918: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:25.037079: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:25.048067: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chrEBV.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:25.073997: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chrEBV.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0247 seconds and 3.2 Mi memory
2023-07-05 13:27:25.074183: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chrEBV.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:25.083338: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chrEBV.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0087 seconds and 3.6 Mi memory
2023-07-05 13:27:25.114999: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2256 seconds and 3.7 Mi memory
2023-07-05 13:27:25.123960: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:25.169199: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0573 seconds and 3.7 Mi memory
2023-07-05 13:27:25.193925: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:25.233777: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:25.247895: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:25.470804: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:25.717402: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9788 seconds and 3.7 Mi memory
2023-07-05 13:27:25.820015: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.5924 seconds and 21.6 Mi memory
2023-07-05 13:27:25.820281: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:25.858526: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9691 seconds and 3.7 Mi memory
2023-07-05 13:27:25.895365: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:26.019455: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:26.076477: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.1945 seconds and 9.6 Mi memory
2023-07-05 13:27:26.076808: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:26.130729: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3097 seconds and 3.7 Mi memory
2023-07-05 13:27:26.197171: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:26.288097: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2104 seconds and 3.8 Mi memory
2023-07-05 13:27:26.344207: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:26.410974: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.0877 seconds and 95.2 Mi memory
2023-07-05 13:27:26.411214: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:26.428409: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.3974 seconds and 129.5 Mi memory
2023-07-05 13:27:26.428760: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:26.657278: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.2572 seconds and 59.4 Mi memory
2023-07-05 13:27:26.657513: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:26.840820: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.2008 seconds and 44.4 Mi memory
2023-07-05 13:27:26.841052: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:26.963867: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.7683 seconds and 10.1 Mi memory
2023-07-05 13:27:26.964132: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:27.041122: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6914 seconds and 84.5 Mi memory
2023-07-05 13:27:27.041475: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:27.167612: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.9329 seconds and 9.9 Mi memory
2023-07-05 13:27:27.167883: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:27.211881: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9866 seconds and 55.7 Mi memory
2023-07-05 13:27:27.212109: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:27.260623: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2956 seconds and 3.7 Mi memory
2023-07-05 13:27:27.323024: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:27.366838: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.5625 seconds and 23.5 Mi memory
2023-07-05 13:27:27.367100: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:27.510060: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.4968 seconds and 47.4 Mi memory
2023-07-05 13:27:27.510335: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:27.514111: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5873 seconds and 40.7 Mi memory
2023-07-05 13:27:27.514348: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:27.556277: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3874 seconds and 3.8 Mi memory
2023-07-05 13:27:27.584318: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1546 seconds and 3.7 Mi memory
2023-07-05 13:27:27.649896: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:27.681893: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.2097 seconds and 16.9 Mi memory
2023-07-05 13:27:27.682236: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:27.710524: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3427 seconds and 3.7 Mi memory
2023-07-05 13:27:27.757936: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.633 seconds and 23.8 Mi memory
2023-07-05 13:27:27.758165: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:27.759499: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:27.767889: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:27.793171: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3811 seconds and 3.8 Mi memory
2023-07-05 13:27:27.808719: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9669 seconds and 3.8 Mi memory
2023-07-05 13:27:27.844299: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1861 seconds and 3.8 Mi memory
2023-07-05 13:27:27.900860: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:28.018508: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3353 seconds and 3.7 Mi memory
2023-07-05 13:27:28.028305: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:28.049192: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2903 seconds and 3.7 Mi memory
2023-07-05 13:27:28.124425: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:28.137175: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:28.145036: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:28.165785: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1235 seconds and 3.7 Mi memory
2023-07-05 13:27:28.185328: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1409 seconds and 86.6 Mi memory
2023-07-05 13:27:28.185570: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:28.214744: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.5027 seconds and 89.2 Mi memory
2023-07-05 13:27:28.215052: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:28.230548: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0177 seconds and 3.8 Mi memory
2023-07-05 13:27:28.252097: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:28.347879: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:28.378623: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.529 seconds and 91.5 Mi memory
2023-07-05 13:27:28.378939: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:28.520875: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0058 seconds and 3.6 Mi memory
2023-07-05 13:27:28.625551: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:28.793358: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.728 seconds and 65.3 Mi memory
2023-07-05 13:27:28.793640: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:28.794165: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8218 seconds and 62.5 Mi memory
2023-07-05 13:27:28.794437: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:28.944238: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.2107 seconds and 42.7 Mi memory
2023-07-05 13:27:28.944481: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:28.965773: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.5576 seconds and 88.4 Mi memory
2023-07-05 13:27:28.966151: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:28.979268: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.5929 seconds and 89.5 Mi memory
2023-07-05 13:27:28.979554: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:29.044949: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5337 seconds and 3.7 Mi memory
2023-07-05 13:27:29.171662: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.0345 seconds and 107.6 Mi memory
2023-07-05 13:27:29.171906: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:29.175849: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9895 seconds and 3.7 Mi memory
2023-07-05 13:27:29.184187: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6903 seconds and 67.0 Mi memory
2023-07-05 13:27:29.184420: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:29.194431: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:29.354970: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:29.506975: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1781 seconds and 87.4 Mi memory
2023-07-05 13:27:29.507216: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:29.530387: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.5894 seconds and 108.3 Mi memory
2023-07-05 13:27:29.530797: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:29.601218: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.6652 seconds and 91.5 Mi memory
2023-07-05 13:27:29.601494: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:29.852276: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0569 seconds and 3.7 Mi memory
2023-07-05 13:27:29.925961: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1304 seconds and 71.7 Mi memory
2023-07-05 13:27:29.926206: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:29.939179: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.3917 seconds and 54.9 Mi memory
2023-07-05 13:27:29.939455: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:29.955811: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:30.047090: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.831 seconds and 3.7 Mi memory
2023-07-05 13:27:30.047149: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.4214 seconds and 87.9 Mi memory
2023-07-05 13:27:30.047417: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:30.115126: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.8952 seconds and 79.4 Mi memory
2023-07-05 13:27:30.115374: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:30.120772: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.6987 seconds and 72.0 Mi memory
2023-07-05 13:27:30.121055: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:30.290227: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:30.306371: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3609 seconds and 3.7 Mi memory
2023-07-05 13:27:30.332647: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9528 seconds and 3.6 Mi memory
2023-07-05 13:27:30.452500: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.264 seconds and 89.5 Mi memory
2023-07-05 13:27:30.452786: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:30.600471: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.9897 seconds and 97.7 Mi memory
2023-07-05 13:27:30.600710: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:30.601298: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.6756 seconds and 66.8 Mi memory
2023-07-05 13:27:30.601577: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:30.650413: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:30.688339: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.503 seconds and 3.8 Mi memory
2023-07-05 13:27:30.693284: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:30.804525: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.9541 seconds and 102.7 Mi memory
2023-07-05 13:27:30.804799: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:30.811352: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:30.814663: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0201 seconds and 3.7 Mi memory
2023-07-05 13:27:30.851131: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.9491 seconds and 15.9 Mi memory
2023-07-05 13:27:30.851380: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:30.964805: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.7978 seconds and 50.1 Mi memory
2023-07-05 13:27:30.965091: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:30.981662: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6557 seconds and 27.1 Mi memory
2023-07-05 13:27:30.981949: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:30.983283: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0161 seconds and 3.7 Mi memory
2023-07-05 13:27:31.073145: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0925 seconds and 3.8 Mi memory
2023-07-05 13:27:31.084847: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.553 seconds and 3.8 Mi memory
2023-07-05 13:27:31.096986: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5889 seconds and 3.7 Mi memory
2023-07-05 13:27:31.111086: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9384 seconds and 3.8 Mi memory
2023-07-05 13:27:31.228350: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:31.241571: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3141 seconds and 3.7 Mi memory
2023-07-05 13:27:31.267022: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4147 seconds and 3.8 Mi memory
2023-07-05 13:27:31.280574: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.2671 seconds and 105.2 Mi memory
2023-07-05 13:27:31.280872: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:31.288171: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.76 seconds and 71.0 Mi memory
2023-07-05 13:27:31.288434: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:31.329721: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:31.374162: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:31.445856: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:31.495777: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:31.516930: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:31.660061: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9411 seconds and 57.5 Mi memory
2023-07-05 13:27:31.660471: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:31.686607: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.875 seconds and 56.9 Mi memory
2023-07-05 13:27:31.686900: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:31.687914: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:31.704671: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:31.805359: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6891 seconds and 3.6 Mi memory
2023-07-05 13:27:31.901619: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:31.928220: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr3.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 14.238 seconds and 190.9 Mi memory
2023-07-05 13:27:31.928497: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr3.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:31.971822: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.6804 seconds and 9.4 Mi memory
2023-07-05 13:27:31.972120: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:31.990954: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0503 seconds and 3.7 Mi memory
2023-07-05 13:27:32.011474: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4099 seconds and 3.7 Mi memory
2023-07-05 13:27:32.031287: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.4287 seconds and 3.7 Mi memory
2023-07-05 13:27:32.113890: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9917 seconds and 3.8 Mi memory
2023-07-05 13:27:32.232204: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.259 seconds and 3.8 Mi memory
2023-07-05 13:27:32.241261: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2582 seconds and 3.7 Mi memory
2023-07-05 13:27:32.282391: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.2339 seconds and 3.7 Mi memory
2023-07-05 13:27:32.333437: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7309 seconds and 3.8 Mi memory
2023-07-05 13:27:32.353201: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.6464 seconds and 7.2 Mi memory
2023-07-05 13:27:32.353431: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:32.363509: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:32.410416: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6046 seconds and 3.8 Mi memory
2023-07-05 13:27:32.416967: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chrUn_KI270742v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:32.429152: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9754 seconds and 3.7 Mi memory
2023-07-05 13:27:32.431034: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chrUn_KI270742v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0129 seconds and 3.1 Mi memory
2023-07-05 13:27:32.431179: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chrUn_KI270742v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:32.437407: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0829 seconds and 3.6 Mi memory
2023-07-05 13:27:32.441057: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chrUn_KI270742v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0094 seconds and 3.8 Mi memory
2023-07-05 13:27:32.461878: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:32.562140: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:32.632417: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9013 seconds and 44.4 Mi memory
2023-07-05 13:27:32.632788: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:32.633514: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.939 seconds and 25.6 Mi memory
2023-07-05 13:27:32.633799: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:32.658421: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:32.658526: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:32.660596: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:32.672606: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8264 seconds and 53.4 Mi memory
2023-07-05 13:27:32.672969: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:32.706906: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:32.816308: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.5867 seconds and 73.7 Mi memory
2023-07-05 13:27:32.816552: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:32.876586: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.6122 seconds and 8.7 Mi memory
2023-07-05 13:27:32.876921: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:32.887848: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:32.911950: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:32.939997: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:32.957160: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:32.958092: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2967 seconds and 3.8 Mi memory
2023-07-05 13:27:33.046005: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.08 seconds and 3.6 Mi memory
2023-07-05 13:27:33.070090: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4352 seconds and 3.7 Mi memory
2023-07-05 13:27:33.108880: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8271 seconds and 3.8 Mi memory
2023-07-05 13:27:33.122406: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2443 seconds and 3.8 Mi memory
2023-07-05 13:27:33.146870: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8572 seconds and 3.8 Mi memory
2023-07-05 13:27:33.148558: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:33.184243: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.6661 seconds and 10.4 Mi memory
2023-07-05 13:27:33.184657: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:33.222140: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:33.275626: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:33.462010: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5325 seconds and 3.8 Mi memory
2023-07-05 13:27:33.478045: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2924 seconds and 3.7 Mi memory
2023-07-05 13:27:33.518753: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr3.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8307 seconds and 3.8 Mi memory
2023-07-05 13:27:33.572251: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:33.573427: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:33.590474: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270373v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:33.603649: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270373v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.012 seconds and 3.0 Mi memory
2023-07-05 13:27:33.603798: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270373v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:33.611489: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270373v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0072 seconds and 3.7 Mi memory
2023-07-05 13:27:33.633683: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:33.634163: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:33.636301: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270507v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:33.642558: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270507v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0057 seconds and 3.2 Mi memory
2023-07-05 13:27:33.642689: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270507v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:33.647376: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270507v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0042 seconds and 3.7 Mi memory
2023-07-05 13:27:33.657703: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270583v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:33.663005: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270583v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0048 seconds and 3.1 Mi memory
2023-07-05 13:27:33.663140: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270583v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:33.667433: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270583v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0038 seconds and 3.8 Mi memory
2023-07-05 13:27:33.685018: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270411v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:33.690391: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270411v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0049 seconds and 3.0 Mi memory
2023-07-05 13:27:33.690521: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270411v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:33.693417: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.0043 seconds and 17.8 Mi memory
2023-07-05 13:27:33.693811: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:33.695214: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270411v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0042 seconds and 3.8 Mi memory
2023-07-05 13:27:33.707066: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.033 seconds and 3.8 Mi memory
2023-07-05 13:27:33.737313: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270303v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:33.743589: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270303v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0058 seconds and 3.0 Mi memory
2023-07-05 13:27:33.743712: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270303v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:33.751950: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270303v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0078 seconds and 3.8 Mi memory
2023-07-05 13:27:33.787574: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270742v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:33.791173: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/_AMBIGUOUS_.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:33.805401: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270742v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0173 seconds and 3.0 Mi memory
2023-07-05 13:27:33.805531: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270742v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:33.811258: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270742v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0052 seconds and 3.7 Mi memory
2023-07-05 13:27:33.834935: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270340v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:33.840117: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270340v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0047 seconds and 3.1 Mi memory
2023-07-05 13:27:33.840238: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270340v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:33.844422: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270340v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0037 seconds and 3.8 Mi memory
2023-07-05 13:27:33.848811: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:33.863215: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrEBV.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:33.880510: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrEBV.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0167 seconds and 3.0 Mi memory
2023-07-05 13:27:33.880635: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrEBV.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:33.882648: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.9244 seconds and 8.9 Mi memory
2023-07-05 13:27:33.882904: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:33.886107: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrEBV.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.005 seconds and 3.7 Mi memory
2023-07-05 13:27:33.904970: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270539v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:33.910710: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270539v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0053 seconds and 3.0 Mi memory
2023-07-05 13:27:33.910834: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270539v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:33.915465: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270539v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0042 seconds and 3.7 Mi memory
2023-07-05 13:27:33.924646: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.0105 seconds and 9.5 Mi memory
2023-07-05 13:27:33.924915: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:33.934729: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270518v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:33.939849: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270518v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0046 seconds and 3.1 Mi memory
2023-07-05 13:27:33.939975: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270518v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:33.944345: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270518v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0039 seconds and 3.7 Mi memory
2023-07-05 13:27:33.963317: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270745v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:33.971806: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270745v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0078 seconds and 2.9 Mi memory
2023-07-05 13:27:33.971933: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270745v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:33.977109: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270745v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0046 seconds and 3.7 Mi memory
2023-07-05 13:27:34.003018: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.2342 seconds and 56.0 Mi memory
2023-07-05 13:27:34.003249: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:34.012907: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270316v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:34.018012: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270316v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0046 seconds and 3.0 Mi memory
2023-07-05 13:27:34.018143: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270316v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:34.023058: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270316v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0045 seconds and 3.8 Mi memory
2023-07-05 13:27:34.036886: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270337v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:34.041643: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270337v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0043 seconds and 3.1 Mi memory
2023-07-05 13:27:34.041765: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270337v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:34.046454: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270337v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0042 seconds and 3.7 Mi memory
2023-07-05 13:27:34.054291: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.1704 seconds and 3.8 Mi memory
2023-07-05 13:27:34.059556: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3648 seconds and 3.8 Mi memory
2023-07-05 13:27:34.068546: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4349 seconds and 3.7 Mi memory
2023-07-05 13:27:34.075672: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.1498 seconds and 3.8 Mi memory
2023-07-05 13:27:34.075893: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:34.099634: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.769 seconds and 15.6 Mi memory
2023-07-05 13:27:34.099653: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.5249 seconds and 6.5 Mi memory
2023-07-05 13:27:34.099866: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:34.099929: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:34.164006: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.2615 seconds and 28.9 Mi memory
2023-07-05 13:27:34.164365: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:34.169273: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0684 seconds and 3.7 Mi memory
2023-07-05 13:27:34.176673: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:34.198883: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:34.210065: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:34.289544: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:34.304522: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.6685 seconds and 7.1 Mi memory
2023-07-05 13:27:34.304788: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:34.324686: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:34.377460: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.2523 seconds and 57.6 Mi memory
2023-07-05 13:27:34.377695: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:34.394283: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0885 seconds and 3.7 Mi memory
2023-07-05 13:27:34.403601: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2384 seconds and 3.7 Mi memory
2023-07-05 13:27:34.415727: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.5266 seconds and 13.7 Mi memory
2023-07-05 13:27:34.415929: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:34.458243: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:34.469965: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:34.471503: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3708 seconds and 3.7 Mi memory
2023-07-05 13:27:34.505065: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:34.536262: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.3967 seconds and 59.6 Mi memory
2023-07-05 13:27:34.536315: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.5951 seconds and 17.8 Mi memory
2023-07-05 13:27:34.536536: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:34.536571: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:34.609190: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7916 seconds and 3.7 Mi memory
2023-07-05 13:27:34.651218: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.9916 seconds and 29.7 Mi memory
2023-07-05 13:27:34.651475: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:34.680858: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2641 seconds and 3.7 Mi memory
2023-07-05 13:27:34.698497: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:34.719569: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7155 seconds and 3.7 Mi memory
2023-07-05 13:27:34.752969: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:34.828800: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:34.842880: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3054 seconds and 3.9 Mi memory
2023-07-05 13:27:34.851862: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.1439 seconds and 22.2 Mi memory
2023-07-05 13:27:34.852251: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:34.903602: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.111 seconds and 8.9 Mi memory
2023-07-05 13:27:34.903876: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:34.904836: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:34.986052: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.0946 seconds and 62.5 Mi memory
2023-07-05 13:27:34.986137: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9481 seconds and 70.6 Mi memory
2023-07-05 13:27:34.986330: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:34.986381: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:35.054399: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 1.4188 seconds and 9.2 Mi memory
2023-07-05 13:27:35.054661: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:35.095132: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4427 seconds and 3.7 Mi memory
2023-07-05 13:27:35.163232: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/_AMBIGUOUS_.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.5036 seconds and 32.6 Mi memory
2023-07-05 13:27:35.163496: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2__AMBIGUOUS_.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:35.164792: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:35.187040: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2821 seconds and 3.7 Mi memory
2023-07-05 13:27:35.189051: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9402 seconds and 65.8 Mi memory
2023-07-05 13:27:35.189454: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:35.215978: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:35.244140: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8655 seconds and 3.7 Mi memory
2023-07-05 13:27:35.288469: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2327 seconds and 3.6 Mi memory
2023-07-05 13:27:35.310191: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:35.318786: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4655 seconds and 3.7 Mi memory
2023-07-05 13:27:35.331730: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:35.361350: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:35.654742: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2__AMBIGUOUS_.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4902 seconds and 3.7 Mi memory
2023-07-05 13:27:35.697849: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr11.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:35.894198: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.5405 seconds and 99.9 Mi memory
2023-07-05 13:27:35.894437: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:35.992112: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0049 seconds and 3.7 Mi memory
2023-07-05 13:27:36.081252: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7362 seconds and 71.5 Mi memory
2023-07-05 13:27:36.081482: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:36.121322: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:36.157024: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.959 seconds and 70.5 Mi memory
2023-07-05 13:27:36.157296: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:36.315422: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.328 seconds and 3.8 Mi memory
2023-07-05 13:27:36.412347: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.6419 seconds and 84.3 Mi memory
2023-07-05 13:27:36.412746: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:36.439082: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:36.453120: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9157 seconds and 3.6 Mi memory
2023-07-05 13:27:36.461973: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2711 seconds and 3.7 Mi memory
2023-07-05 13:27:36.496470: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.6777 seconds and 80.5 Mi memory
2023-07-05 13:27:36.496703: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:36.623031: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.8848 seconds and 99.3 Mi memory
2023-07-05 13:27:36.623265: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:36.641259: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:36.671182: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:36.725188: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.4841 seconds and 67.8 Mi memory
2023-07-05 13:27:36.725549: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:36.929166: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.7558 seconds and 46.3 Mi memory
2023-07-05 13:27:36.929520: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:37.196831: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.6279 seconds and 73.2 Mi memory
2023-07-05 13:27:37.197198: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:37.203666: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.4427 seconds and 89.3 Mi memory
2023-07-05 13:27:37.203901: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:37.267745: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1096 seconds and 3.7 Mi memory
2023-07-05 13:27:37.294291: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9703 seconds and 66.5 Mi memory
2023-07-05 13:27:37.294574: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:37.326431: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.6757 seconds and 92.4 Mi memory
2023-07-05 13:27:37.326677: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:37.349031: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4539 seconds and 3.8 Mi memory
2023-07-05 13:27:37.445715: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:37.457357: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:37.521044: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.6317 seconds and 107.6 Mi memory
2023-07-05 13:27:37.521288: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:37.522871: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4405 seconds and 3.7 Mi memory
2023-07-05 13:27:37.537719: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.8381 seconds and 37.7 Mi memory
2023-07-05 13:27:37.537954: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:37.680692: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.3057 seconds and 32.3 Mi memory
2023-07-05 13:27:37.680928: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:37.730264: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:37.798278: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3846 seconds and 3.7 Mi memory
2023-07-05 13:27:37.820455: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.8154 seconds and 74.0 Mi memory
2023-07-05 13:27:37.820787: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:37.883517: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3448 seconds and 3.8 Mi memory
2023-07-05 13:27:38.008726: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.3579 seconds and 71.5 Mi memory
2023-07-05 13:27:38.009011: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:38.069578: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:38.075181: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4512 seconds and 3.6 Mi memory
2023-07-05 13:27:38.117434: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.62 seconds and 3.8 Mi memory
2023-07-05 13:27:38.136857: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:38.173876: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4475 seconds and 3.8 Mi memory
2023-07-05 13:27:38.232561: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:38.261253: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:38.289939: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:38.327044: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0316 seconds and 3.7 Mi memory
2023-07-05 13:27:38.369843: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.2316 seconds and 58.8 Mi memory
2023-07-05 13:27:38.370216: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:38.420509: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:38.532150: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.6358 seconds and 67.0 Mi memory
2023-07-05 13:27:38.532396: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:38.609339: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9276 seconds and 3.7 Mi memory
2023-07-05 13:27:38.693109: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:38.704401: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.6839 seconds and 99.3 Mi memory
2023-07-05 13:27:38.704668: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:38.721095: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7907 seconds and 3.7 Mi memory
2023-07-05 13:27:38.724137: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3967 seconds and 3.8 Mi memory
2023-07-05 13:27:38.791640: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2695 seconds and 3.7 Mi memory
2023-07-05 13:27:38.863128: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.665 seconds and 3.7 Mi memory
2023-07-05 13:27:38.883958: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:38.917360: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:38.938193: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:38.983655: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:39.096073: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.843 seconds and 108.6 Mi memory
2023-07-05 13:27:39.096434: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:39.147262: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1374 seconds and 3.8 Mi memory
2023-07-05 13:27:39.204310: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9997 seconds and 3.6 Mi memory
2023-07-05 13:27:39.318150: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:39.321994: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:39.405861: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.7793 seconds and 78.9 Mi memory
2023-07-05 13:27:39.406107: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:39.461808: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6402 seconds and 3.8 Mi memory
2023-07-05 13:27:39.555840: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.9131 seconds and 15.3 Mi memory
2023-07-05 13:27:39.556112: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:39.611426: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:39.703293: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.332 seconds and 3.7 Mi memory
2023-07-05 13:27:39.789241: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2561 seconds and 3.7 Mi memory
2023-07-05 13:27:39.968886: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4119 seconds and 3.7 Mi memory
2023-07-05 13:27:39.971089: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:40.022971: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:40.024010: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:40.063541: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.358 seconds and 3.7 Mi memory
2023-07-05 13:27:40.138252: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6798 seconds and 14.8 Mi memory
2023-07-05 13:27:40.138612: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:40.164223: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:40.297188: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1999 seconds and 3.7 Mi memory
2023-07-05 13:27:40.371254: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.6108 seconds and 103.1 Mi memory
2023-07-05 13:27:40.371501: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:40.422057: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2826 seconds and 3.7 Mi memory
2023-07-05 13:27:40.470270: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0633 seconds and 3.7 Mi memory
2023-07-05 13:27:40.490940: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:40.547161: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:40.714250: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.2552 seconds and 51.6 Mi memory
2023-07-05 13:27:40.714474: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:40.733102: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:40.733806: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.596 seconds and 25.6 Mi memory
2023-07-05 13:27:40.734173: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:40.831850: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.3259 seconds and 55.0 Mi memory
2023-07-05 13:27:40.832182: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:40.865342: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6319 seconds and 23.2 Mi memory
2023-07-05 13:27:40.865690: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:40.947260: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6848 seconds and 24.3 Mi memory
2023-07-05 13:27:40.947614: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:41.030842: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2958 seconds and 3.7 Mi memory
2023-07-05 13:27:41.064923: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:41.076185: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.0469 seconds and 72.2 Mi memory
2023-07-05 13:27:41.076442: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:41.094539: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.948 seconds and 97.7 Mi memory
2023-07-05 13:27:41.094871: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:41.198418: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.8497 seconds and 103.4 Mi memory
2023-07-05 13:27:41.198659: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:41.223926: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2755 seconds and 3.8 Mi memory
2023-07-05 13:27:41.256959: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3904 seconds and 3.7 Mi memory
2023-07-05 13:27:41.276602: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:41.290540: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:41.399172: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.1084 seconds and 31.4 Mi memory
2023-07-05 13:27:41.399529: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:41.539756: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6539 seconds and 17.9 Mi memory
2023-07-05 13:27:41.539983: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:41.652599: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9373 seconds and 3.7 Mi memory
2023-07-05 13:27:41.693774: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8608 seconds and 3.7 Mi memory
2023-07-05 13:27:41.732340: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.332 seconds and 3.7 Mi memory
2023-07-05 13:27:41.738624: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:41.747792: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.7631 seconds and 18.5 Mi memory
2023-07-05 13:27:41.748021: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:41.775976: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:41.785856: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:41.852709: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4804 seconds and 3.8 Mi memory
2023-07-05 13:27:41.860351: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.9214 seconds and 32.3 Mi memory
2023-07-05 13:27:41.860697: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:41.902426: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3616 seconds and 3.6 Mi memory
2023-07-05 13:27:41.920936: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.0021 seconds and 28.6 Mi memory
2023-07-05 13:27:41.921303: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:41.953248: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:41.982159: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:42.022253: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.8267 seconds and 108.3 Mi memory
2023-07-05 13:27:42.022652: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:42.041705: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.7188 seconds and 23.5 Mi memory
2023-07-05 13:27:42.041949: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:42.045674: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.6897 seconds and 107.5 Mi memory
2023-07-05 13:27:42.045974: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:42.110192: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3612 seconds and 3.7 Mi memory
2023-07-05 13:27:42.120338: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.756 seconds and 51.4 Mi memory
2023-07-05 13:27:42.120609: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:42.145879: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:42.233774: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3722 seconds and 3.8 Mi memory
2023-07-05 13:27:42.268210: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3461 seconds and 3.7 Mi memory
2023-07-05 13:27:42.270403: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:42.279194: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6665 seconds and 21.5 Mi memory
2023-07-05 13:27:42.279552: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:42.308963: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:42.400539: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3579 seconds and 3.9 Mi memory
2023-07-05 13:27:42.437768: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:42.562006: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2816 seconds and 3.8 Mi memory
2023-07-05 13:27:42.601481: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:42.628483: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5512 seconds and 3.7 Mi memory
2023-07-05 13:27:42.687252: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5916 seconds and 3.7 Mi memory
2023-07-05 13:27:42.707277: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.542 seconds and 22.0 Mi memory
2023-07-05 13:27:42.707518: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:42.721111: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5216 seconds and 3.7 Mi memory
2023-07-05 13:27:42.721959: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.0603 seconds and 60.6 Mi memory
2023-07-05 13:27:42.722213: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:42.736416: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:42.852932: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:42.857097: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.9003 seconds and 79.0 Mi memory
2023-07-05 13:27:42.857367: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:42.864405: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:42.873580: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6505 seconds and 129.8 Mi memory
2023-07-05 13:27:42.873869: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:42.927042: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.65 seconds and 60.6 Mi memory
2023-07-05 13:27:42.927324: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:43.036623: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3283 seconds and 3.7 Mi memory
2023-07-05 13:27:43.072557: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:43.078886: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.1067 seconds and 32.8 Mi memory
2023-07-05 13:27:43.079158: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:43.188983: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0674 seconds and 3.7 Mi memory
2023-07-05 13:27:43.312704: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:43.435991: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.356 seconds and 3.8 Mi memory
2023-07-05 13:27:43.451513: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8784 seconds and 71.2 Mi memory
2023-07-05 13:27:43.451794: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:43.468075: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:43.534032: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.882 seconds and 50.2 Mi memory
2023-07-05 13:27:43.534272: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:43.640472: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.8282 seconds and 91.8 Mi memory
2023-07-05 13:27:43.640828: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:43.726741: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7029 seconds and 3.6 Mi memory
2023-07-05 13:27:43.727992: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6512 seconds and 130.5 Mi memory
2023-07-05 13:27:43.728353: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:43.765916: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7191 seconds and 3.7 Mi memory
2023-07-05 13:27:43.819833: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:43.907818: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:43.937521: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.4745 seconds and 95.5 Mi memory
2023-07-05 13:27:43.937769: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:43.958887: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.512 seconds and 99.3 Mi memory
2023-07-05 13:27:43.959158: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:43.970802: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7599 seconds and 52.9 Mi memory
2023-07-05 13:27:43.971098: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:44.036586: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.746 seconds and 67.4 Mi memory
2023-07-05 13:27:44.036852: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:44.105271: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9276 seconds and 62.5 Mi memory
2023-07-05 13:27:44.105536: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:44.128083: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1996 seconds and 3.8 Mi memory
2023-07-05 13:27:44.152407: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4293 seconds and 3.8 Mi memory
2023-07-05 13:27:44.170496: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.1 seconds and 54.7 Mi memory
2023-07-05 13:27:44.170856: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:44.212142: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7413 seconds and 48.6 Mi memory
2023-07-05 13:27:44.212542: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:44.244561: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3698 seconds and 3.8 Mi memory
2023-07-05 13:27:44.268455: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.0684 seconds and 70.5 Mi memory
2023-07-05 13:27:44.268718: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:44.373494: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:44.406411: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:44.443886: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:44.496382: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.9996 seconds and 43.0 Mi memory
2023-07-05 13:27:44.496623: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:44.512841: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7589 seconds and 50.3 Mi memory
2023-07-05 13:27:44.513111: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:44.630442: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6763 seconds and 25.5 Mi memory
2023-07-05 13:27:44.630680: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:44.733712: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8279 seconds and 66.3 Mi memory
2023-07-05 13:27:44.733985: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:44.884741: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7189 seconds and 70.7 Mi memory
2023-07-05 13:27:44.885030: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:44.889830: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.0602 seconds and 120.7 Mi memory
2023-07-05 13:27:44.890066: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:44.891893: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0335 seconds and 3.6 Mi memory
2023-07-05 13:27:44.936176: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6252 seconds and 79.4 Mi memory
2023-07-05 13:27:44.936429: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:44.978456: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8066 seconds and 3.8 Mi memory
2023-07-05 13:27:44.994437: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:45.001563: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7846 seconds and 44.9 Mi memory
2023-07-05 13:27:45.001802: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:45.026326: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5735 seconds and 3.7 Mi memory
2023-07-05 13:27:45.031545: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4 seconds and 3.7 Mi memory
2023-07-05 13:27:45.072596: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:45.078068: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7453 seconds and 66.8 Mi memory
2023-07-05 13:27:45.078334: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:45.083050: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:45.152493: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1805 seconds and 3.7 Mi memory
2023-07-05 13:27:45.160581: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7983 seconds and 48.5 Mi memory
2023-07-05 13:27:45.160985: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:45.272681: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:45.289504: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3295 seconds and 3.7 Mi memory
2023-07-05 13:27:45.304356: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.575 seconds and 3.8 Mi memory
2023-07-05 13:27:45.365617: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8304 seconds and 3.7 Mi memory
2023-07-05 13:27:45.421036: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270384v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:45.423893: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:45.424054: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:45.428166: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.8637 seconds and 32.5 Mi memory
2023-07-05 13:27:45.428257: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270384v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0063 seconds and 3.1 Mi memory
2023-07-05 13:27:45.428426: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270384v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:45.428434: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:45.434413: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270384v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0054 seconds and 3.7 Mi memory
2023-07-05 13:27:45.440343: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270333v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:45.446109: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270333v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0052 seconds and 3.1 Mi memory
2023-07-05 13:27:45.446265: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270333v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:45.451021: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270333v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0042 seconds and 3.7 Mi memory
2023-07-05 13:27:45.455810: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2421 seconds and 3.8 Mi memory
2023-07-05 13:27:45.487339: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr1_KI270713v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:45.499845: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr1_KI270713v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0117 seconds and 3.1 Mi memory
2023-07-05 13:27:45.500032: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr1_KI270713v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:45.505722: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8638 seconds and 3.7 Mi memory
2023-07-05 13:27:45.509774: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr1_KI270713v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0065 seconds and 3.7 Mi memory
2023-07-05 13:27:45.543339: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5054 seconds and 3.7 Mi memory
2023-07-05 13:27:45.544385: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:45.544979: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270385v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:45.550147: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.036 seconds and 3.7 Mi memory
2023-07-05 13:27:45.555540: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270385v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0098 seconds and 3.1 Mi memory
2023-07-05 13:27:45.555687: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270385v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:45.566053: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270385v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0098 seconds and 3.7 Mi memory
2023-07-05 13:27:45.595483: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.7303 seconds and 26.6 Mi memory
2023-07-05 13:27:45.595730: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:45.617007: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr11.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9182 seconds and 63.5 Mi memory
2023-07-05 13:27:45.617382: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr11.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:45.619769: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5132 seconds and 3.7 Mi memory
2023-07-05 13:27:45.646369: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:45.649355: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:45.708228: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.9709 seconds and 17.8 Mi memory
2023-07-05 13:27:45.708583: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:45.718738: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7801 seconds and 3.8 Mi memory
2023-07-05 13:27:45.764301: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4945 seconds and 3.7 Mi memory
2023-07-05 13:27:45.785144: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:45.854766: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.7049 seconds and 59.6 Mi memory
2023-07-05 13:27:45.855138: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:45.859312: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.0055 seconds and 12.5 Mi memory
2023-07-05 13:27:45.859539: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:45.865779: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:45.893373: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:45.916424: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:45.961825: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0247 seconds and 3.7 Mi memory
2023-07-05 13:27:45.967066: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3705 seconds and 3.8 Mi memory
2023-07-05 13:27:46.016329: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr22_KI270733v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:46.024716: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/chr22_KI270733v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0077 seconds and 3.0 Mi memory
2023-07-05 13:27:46.024854: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr22_KI270733v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:46.030456: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b86b/b908/tmpyic3rld5/HG00621.1_chr22_KI270733v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0051 seconds and 3.7 Mi memory
2023-07-05 13:27:46.032119: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:46.044349: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:46.141641: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4318 seconds and 3.7 Mi memory
2023-07-05 13:27:46.187012: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:46.192325: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.332 seconds and 3.7 Mi memory
2023-07-05 13:27:46.205839: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:46.212337: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4774 seconds and 3.7 Mi memory
2023-07-05 13:27:46.249696: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:46.255985: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7586 seconds and 3.8 Mi memory
2023-07-05 13:27:46.259503: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.2352 seconds and 61.2 Mi memory
2023-07-05 13:27:46.259781: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:46.304076: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4181 seconds and 3.8 Mi memory
2023-07-05 13:27:46.311399: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2321 seconds and 3.7 Mi memory
2023-07-05 13:27:46.339994: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:46.414203: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5232 seconds and 3.7 Mi memory
2023-07-05 13:27:46.457517: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4547 seconds and 3.8 Mi memory
2023-07-05 13:27:46.515863: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:46.590729: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.7408 seconds and 60.4 Mi memory
2023-07-05 13:27:46.591032: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:46.593434: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6847 seconds and 31.0 Mi memory
2023-07-05 13:27:46.593657: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:46.600330: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:46.601277: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:46.608269: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:46.634990: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.814 seconds and 20.1 Mi memory
2023-07-05 13:27:46.635241: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:46.685863: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:46.773811: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6118 seconds and 3.7 Mi memory
2023-07-05 13:27:46.831244: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.3396 seconds and 64.7 Mi memory
2023-07-05 13:27:46.831487: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:46.940870: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:46.974078: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3796 seconds and 3.7 Mi memory
2023-07-05 13:27:46.977134: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3408 seconds and 3.7 Mi memory
2023-07-05 13:27:46.991078: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7304 seconds and 3.8 Mi memory
2023-07-05 13:27:47.019875: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:47.034514: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:47.053041: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr11.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4347 seconds and 3.9 Mi memory
2023-07-05 13:27:47.092538: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:47.100161: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.0344 seconds and 55.9 Mi memory
2023-07-05 13:27:47.100368: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:47.241845: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr6.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:47.269833: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.9437 seconds and 55.1 Mi memory
2023-07-05 13:27:47.270236: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:47.312092: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8828 seconds and 3.7 Mi memory
2023-07-05 13:27:47.438827: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:47.444278: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.1529 seconds and 48.0 Mi memory
2023-07-05 13:27:47.444634: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:47.580007: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.3027 seconds and 80.0 Mi memory
2023-07-05 13:27:47.580247: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:47.636536: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7805 seconds and 3.7 Mi memory
2023-07-05 13:27:47.671726: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8395 seconds and 3.7 Mi memory
2023-07-05 13:27:47.772074: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:47.785141: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:47.987335: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8862 seconds and 3.6 Mi memory
2023-07-05 13:27:48.037636: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.0421 seconds and 18.1 Mi memory
2023-07-05 13:27:48.037897: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:48.048605: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.262 seconds and 65.3 Mi memory
2023-07-05 13:27:48.048843: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:48.065643: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:48.106885: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.1235 seconds and 33.9 Mi memory
2023-07-05 13:27:48.107279: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:48.245103: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6641 seconds and 3.8 Mi memory
2023-07-05 13:27:48.268548: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.1218 seconds and 57.8 Mi memory
2023-07-05 13:27:48.269180: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:48.270377: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6201 seconds and 17.5 Mi memory
2023-07-05 13:27:48.270734: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:48.273044: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8274 seconds and 3.8 Mi memory
2023-07-05 13:27:48.278764: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6869 seconds and 3.7 Mi memory
2023-07-05 13:27:48.313248: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:48.331419: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.7856 seconds and 24.6 Mi memory
2023-07-05 13:27:48.331775: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:48.385264: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3465 seconds and 3.9 Mi memory
2023-07-05 13:27:48.410860: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:48.415490: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:48.423724: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7298 seconds and 118.6 Mi memory
2023-07-05 13:27:48.423960: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:48.424467: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:48.625786: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.3032 seconds and 51.6 Mi memory
2023-07-05 13:27:48.625858: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3443 seconds and 3.7 Mi memory
2023-07-05 13:27:48.626063: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:48.628319: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.357 seconds and 57.0 Mi memory
2023-07-05 13:27:48.628353: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.2035 seconds and 32.5 Mi memory
2023-07-05 13:27:48.628555: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:48.628591: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:48.647415: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.5252 seconds and 51.4 Mi memory
2023-07-05 13:27:48.647684: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:48.661274: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:48.702305: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3696 seconds and 3.7 Mi memory
2023-07-05 13:27:48.733772: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:48.773191: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.3347 seconds and 55.1 Mi memory
2023-07-05 13:27:48.773441: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:48.832936: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.2307 seconds and 76.8 Mi memory
2023-07-05 13:27:48.833170: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:48.855350: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8057 seconds and 3.7 Mi memory
2023-07-05 13:27:48.917079: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:48.976161: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.5361 seconds and 108.1 Mi memory
2023-07-05 13:27:48.976416: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:49.026842: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3972 seconds and 3.7 Mi memory
2023-07-05 13:27:49.067242: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:49.073493: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9653 seconds and 3.8 Mi memory
2023-07-05 13:27:49.126466: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8552 seconds and 3.9 Mi memory
2023-07-05 13:27:49.138061: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8681 seconds and 3.7 Mi memory
2023-07-05 13:27:49.169924: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:49.261479: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:49.265572: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:49.271154: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.7531 seconds and 15.0 Mi memory
2023-07-05 13:27:49.271503: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:49.359633: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.73 seconds and 3.8 Mi memory
2023-07-05 13:27:49.411864: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.7396 seconds and 53.9 Mi memory
2023-07-05 13:27:49.412151: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:49.422966: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7956 seconds and 3.8 Mi memory
2023-07-05 13:27:49.441812: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:49.509667: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:49.656966: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3846 seconds and 3.6 Mi memory
2023-07-05 13:27:49.666651: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8327 seconds and 3.7 Mi memory
2023-07-05 13:27:49.678626: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9043 seconds and 3.7 Mi memory
2023-07-05 13:27:49.708469: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:49.756448: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:49.776304: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.7028 seconds and 61.4 Mi memory
2023-07-05 13:27:49.776646: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:49.778865: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:49.800421: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3756 seconds and 3.8 Mi memory
2023-07-05 13:27:49.911663: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:49.924204: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.4775 seconds and 119.9 Mi memory
2023-07-05 13:27:49.924465: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:50.104570: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.6357 seconds and 60.9 Mi memory
2023-07-05 13:27:50.104808: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:50.270372: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.8301 seconds and 20.2 Mi memory
2023-07-05 13:27:50.270764: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:50.349585: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.701 seconds and 3.8 Mi memory
2023-07-05 13:27:50.462318: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6844 seconds and 3.8 Mi memory
2023-07-05 13:27:50.477511: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:50.514285: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.7281 seconds and 24.0 Mi memory
2023-07-05 13:27:50.514564: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:50.537050: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:50.671181: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3992 seconds and 3.7 Mi memory
2023-07-05 13:27:50.706985: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:50.747201: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.0147 seconds and 107.8 Mi memory
2023-07-05 13:27:50.747445: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:50.800312: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.823 seconds and 3.7 Mi memory
2023-07-05 13:27:50.816553: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3011 seconds and 3.8 Mi memory
2023-07-05 13:27:50.855342: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4424 seconds and 3.8 Mi memory
2023-07-05 13:27:50.867095: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:50.907086: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:51.009375: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:51.188522: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0829 seconds and 3.8 Mi memory
2023-07-05 13:27:51.268145: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:51.386574: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.9745 seconds and 30.2 Mi memory
2023-07-05 13:27:51.386844: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:51.405361: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.9838 seconds and 91.7 Mi memory
2023-07-05 13:27:51.405633: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:51.529920: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6046 seconds and 3.6 Mi memory
2023-07-05 13:27:51.544391: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.4605 seconds and 58.1 Mi memory
2023-07-05 13:27:51.544758: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:51.577756: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8382 seconds and 79.0 Mi memory
2023-07-05 13:27:51.577989: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:51.628926: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:51.692465: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3047 seconds and 3.7 Mi memory
2023-07-05 13:27:51.727547: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:51.832274: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.5132 seconds and 52.6 Mi memory
2023-07-05 13:27:51.832544: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:51.955545: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2073 seconds and 3.7 Mi memory
2023-07-05 13:27:52.065125: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:52.159195: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.3823 seconds and 78.7 Mi memory
2023-07-05 13:27:52.159559: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:52.297173: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.0346 seconds and 25.8 Mi memory
2023-07-05 13:27:52.297557: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:52.322054: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.774 seconds and 91.8 Mi memory
2023-07-05 13:27:52.322288: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:52.360026: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8144 seconds and 3.8 Mi memory
2023-07-05 13:27:52.426154: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.3933 seconds and 64.3 Mi memory
2023-07-05 13:27:52.426504: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:52.433977: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:52.478231: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.2716 seconds and 51.1 Mi memory
2023-07-05 13:27:52.478441: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:52.610083: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3116 seconds and 3.7 Mi memory
2023-07-05 13:27:52.626609: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.3761 seconds and 31.8 Mi memory
2023-07-05 13:27:52.626844: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:52.645621: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:52.665497: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.9315 seconds and 54.5 Mi memory
2023-07-05 13:27:52.665731: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:52.820540: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.7848 seconds and 78.2 Mi memory
2023-07-05 13:27:52.820820: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:52.850271: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2715 seconds and 3.7 Mi memory
2023-07-05 13:27:52.944722: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:52.990631: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.9643 seconds and 52.9 Mi memory
2023-07-05 13:27:52.991013: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:53.058553: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6311 seconds and 3.7 Mi memory
2023-07-05 13:27:53.102185: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6958 seconds and 3.7 Mi memory
2023-07-05 13:27:53.104525: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2711 seconds and 3.7 Mi memory
2023-07-05 13:27:53.136971: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6579 seconds and 3.8 Mi memory
2023-07-05 13:27:53.146802: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6678 seconds and 25.3 Mi memory
2023-07-05 13:27:53.147081: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:53.163016: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:53.224748: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:53.231402: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.071 seconds and 3.7 Mi memory
2023-07-05 13:27:53.279962: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:53.288900: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:53.296477: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6689 seconds and 3.7 Mi memory
2023-07-05 13:27:53.351808: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:53.382328: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:53.494270: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.5862 seconds and 26.6 Mi memory
2023-07-05 13:27:53.494622: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:53.500221: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3523 seconds and 3.6 Mi memory
2023-07-05 13:27:53.530811: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:53.572968: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7512 seconds and 3.8 Mi memory
2023-07-05 13:27:53.623252: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c74b/856e/tmpc2wpcmdp/HG02717.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3002 seconds and 3.8 Mi memory
2023-07-05 13:27:53.654877: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:53.781815: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.7611 seconds and 56.2 Mi memory
2023-07-05 13:27:53.782155: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:53.809230: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/65d9/fc4a/tmppytxhaij/HG02572.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1427 seconds and 3.8 Mi memory
2023-07-05 13:27:53.813404: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3175 seconds and 3.7 Mi memory
2023-07-05 13:27:53.878352: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.8675 seconds and 17.8 Mi memory
2023-07-05 13:27:53.878748: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:53.881228: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:54.141791: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.512 seconds and 23.2 Mi memory
2023-07-05 13:27:54.142063: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:54.239642: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2476 seconds and 3.8 Mi memory
2023-07-05 13:27:54.301828: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4221 seconds and 3.8 Mi memory
2023-07-05 13:27:54.372674: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:54.376980: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.594 seconds and 3.7 Mi memory
2023-07-05 13:27:54.377976: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:54.456533: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:54.518297: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3753 seconds and 3.7 Mi memory
2023-07-05 13:27:54.555868: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:54.604212: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.538 seconds and 22.7 Mi memory
2023-07-05 13:27:54.604442: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:54.814549: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.3889 seconds and 64.5 Mi memory
2023-07-05 13:27:54.814952: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:54.863036: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.2008 seconds and 76.9 Mi memory
2023-07-05 13:27:54.863369: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:54.905311: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2997 seconds and 3.9 Mi memory
2023-07-05 13:27:54.954729: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:55.227037: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.4924 seconds and 51.7 Mi memory
2023-07-05 13:27:55.227281: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:55.437135: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5729 seconds and 3.8 Mi memory
2023-07-05 13:27:55.499232: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:55.508520: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.4404 seconds and 81.3 Mi memory
2023-07-05 13:27:55.508855: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:55.607764: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5338 seconds and 119.4 Mi memory
2023-07-05 13:27:55.608120: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:55.655762: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8397 seconds and 3.8 Mi memory
2023-07-05 13:27:55.740780: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:55.827380: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6013 seconds and 15.2 Mi memory
2023-07-05 13:27:55.827750: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:55.830943: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6029 seconds and 3.8 Mi memory
2023-07-05 13:27:55.896238: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.1869 seconds and 71.4 Mi memory
2023-07-05 13:27:55.896468: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:55.902633: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:55.936712: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6555 seconds and 20.3 Mi memory
2023-07-05 13:27:55.936970: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:56.110701: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.282 seconds and 3.7 Mi memory
2023-07-05 13:27:56.149657: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:56.218948: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2811 seconds and 3.7 Mi memory
2023-07-05 13:27:56.226286: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7165 seconds and 3.7 Mi memory
2023-07-05 13:27:56.249335: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:56.297669: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:56.400721: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6927 seconds and 51.7 Mi memory
2023-07-05 13:27:56.401031: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:56.479515: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.1657 seconds and 98.0 Mi memory
2023-07-05 13:27:56.479798: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:56.562624: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6654 seconds and 3.7 Mi memory
2023-07-05 13:27:56.624314: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:56.717997: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6244 seconds and 38.1 Mi memory
2023-07-05 13:27:56.718396: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:56.898378: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.5239 seconds and 70.3 Mi memory
2023-07-05 13:27:56.898657: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:56.901527: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2924 seconds and 3.8 Mi memory
2023-07-05 13:27:56.904979: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.4597 seconds and 71.4 Mi memory
2023-07-05 13:27:56.905256: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:56.920406: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.5415 seconds and 20.2 Mi memory
2023-07-05 13:27:56.920652: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:56.942380: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.0743 seconds and 57.3 Mi memory
2023-07-05 13:27:56.942657: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:56.989678: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:57.236276: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.0477 seconds and 90.3 Mi memory
2023-07-05 13:27:57.236524: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:57.239742: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6383 seconds and 51.6 Mi memory
2023-07-05 13:27:57.239986: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:57.240686: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8386 seconds and 3.7 Mi memory
2023-07-05 13:27:57.283767: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3623 seconds and 3.8 Mi memory
2023-07-05 13:27:57.334105: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:57.339909: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:57.341387: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.9334 seconds and 123.0 Mi memory
2023-07-05 13:27:57.341660: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:57.652011: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9234 seconds and 51.4 Mi memory
2023-07-05 13:27:57.652294: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:57.664841: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7213 seconds and 3.6 Mi memory
2023-07-05 13:27:57.667646: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6011 seconds and 87.9 Mi memory
2023-07-05 13:27:57.667927: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:57.720106: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:57.828249: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1089 seconds and 3.7 Mi memory
2023-07-05 13:27:57.918718: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1457 seconds and 123.2 Mi memory
2023-07-05 13:27:57.919155: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:57.976715: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.5511 seconds and 84.1 Mi memory
2023-07-05 13:27:57.976985: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:57.977534: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:57.990151: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5093 seconds and 3.8 Mi memory
2023-07-05 13:27:58.116585: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:58.280392: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.633 seconds and 164.6 Mi memory
2023-07-05 13:27:58.280662: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:58.311794: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4055 seconds and 3.7 Mi memory
2023-07-05 13:27:58.360559: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.0863 seconds and 100.0 Mi memory
2023-07-05 13:27:58.360832: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:58.375205: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.0611 seconds and 119.6 Mi memory
2023-07-05 13:27:58.375444: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:58.406814: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.507 seconds and 3.7 Mi memory
2023-07-05 13:27:58.407945: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1671 seconds and 3.7 Mi memory
2023-07-05 13:27:58.435606: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.3899 seconds and 99.3 Mi memory
2023-07-05 13:27:58.435889: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:58.446907: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7938 seconds and 3.7 Mi memory
2023-07-05 13:27:58.448594: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:58.453130: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.5863 seconds and 86.6 Mi memory
2023-07-05 13:27:58.453408: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:58.521664: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.6267 seconds and 72.1 Mi memory
2023-07-05 13:27:58.521940: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:58.567647: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.7808 seconds and 47.0 Mi memory
2023-07-05 13:27:58.567891: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:58.580901: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:58.602072: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:58.639307: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7213 seconds and 44.9 Mi memory
2023-07-05 13:27:58.639531: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:58.688245: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.7709 seconds and 58.5 Mi memory
2023-07-05 13:27:58.688515: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:58.696452: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.0497 seconds and 62.7 Mi memory
2023-07-05 13:27:58.696732: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:58.710062: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.2929 seconds and 126.1 Mi memory
2023-07-05 13:27:58.710307: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:58.753102: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:58.791652: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5542 seconds and 3.8 Mi memory
2023-07-05 13:27:58.843474: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1748 seconds and 3.7 Mi memory
2023-07-05 13:27:58.931636: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0116 seconds and 3.6 Mi memory
2023-07-05 13:27:58.981973: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:59.018275: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6757 seconds and 3.7 Mi memory
2023-07-05 13:27:59.039576: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8688 seconds and 42.1 Mi memory
2023-07-05 13:27:59.039820: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:59.074382: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:59.114386: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:59.175261: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:59.188630: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.5018 seconds and 53.4 Mi memory
2023-07-05 13:27:59.189125: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:59.193317: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.852 seconds and 89.5 Mi memory
2023-07-05 13:27:59.193603: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:59.197410: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.931 seconds and 81.3 Mi memory
2023-07-05 13:27:59.197649: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:59.244593: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2667 seconds and 3.8 Mi memory
2023-07-05 13:27:59.288004: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.6679 seconds and 35.0 Mi memory
2023-07-05 13:27:59.288267: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:59.302740: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7922 seconds and 86.9 Mi memory
2023-07-05 13:27:59.303010: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:59.358870: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:59.369657: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.927 seconds and 84.3 Mi memory
2023-07-05 13:27:59.369913: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:59.489102: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.5468 seconds and 67.1 Mi memory
2023-07-05 13:27:59.489376: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:59.533721: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1575 seconds and 3.8 Mi memory
2023-07-05 13:27:59.554473: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.0227 seconds and 51.6 Mi memory
2023-07-05 13:27:59.554977: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:59.572821: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.793 seconds and 74.8 Mi memory
2023-07-05 13:27:59.573064: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:59.590067: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8925 seconds and 3.7 Mi memory
2023-07-05 13:27:59.632100: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:59.671499: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 13.062 seconds and 57.0 Mi memory
2023-07-05 13:27:59.671777: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:59.675071: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:59.799779: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0886 seconds and 3.7 Mi memory
2023-07-05 13:27:59.835468: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9532 seconds and 57.3 Mi memory
2023-07-05 13:27:59.835843: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:59.867089: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5052 seconds and 3.7 Mi memory
2023-07-05 13:27:59.898083: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:59.955369: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:27:59.965761: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.2084 seconds and 68.8 Mi memory
2023-07-05 13:27:59.966010: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:27:59.968138: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr6.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 12.7247 seconds and 62.9 Mi memory
2023-07-05 13:27:59.968355: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr6.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:00.007673: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3673 seconds and 3.7 Mi memory
2023-07-05 13:28:00.113438: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.5752 seconds and 50.1 Mi memory
2023-07-05 13:28:00.113856: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:00.144307: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:00.146633: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5778 seconds and 3.8 Mi memory
2023-07-05 13:28:00.152180: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8707 seconds and 3.7 Mi memory
2023-07-05 13:28:00.254452: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:00.311365: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.622 seconds and 3.7 Mi memory
2023-07-05 13:28:00.342433: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.8196 seconds and 3.7 Mi memory
2023-07-05 13:28:00.364293: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:00.373100: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3326 seconds and 3.8 Mi memory
2023-07-05 13:28:00.404620: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9678 seconds and 3.7 Mi memory
2023-07-05 13:28:00.416310: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:00.436048: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.88 seconds and 3.7 Mi memory
2023-07-05 13:28:00.440925: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2424 seconds and 3.7 Mi memory
2023-07-05 13:28:00.502442: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 2.0481 seconds and 3.8 Mi memory
2023-07-05 13:28:00.581938: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:00.589350: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.2158 seconds and 51.1 Mi memory
2023-07-05 13:28:00.589741: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:00.594220: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7574 seconds and 3.8 Mi memory
2023-07-05 13:28:00.605494: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:00.606727: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4166 seconds and 3.7 Mi memory
2023-07-05 13:28:00.606708: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:00.624100: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0502 seconds and 3.7 Mi memory
2023-07-05 13:28:00.631091: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.3621 seconds and 83.8 Mi memory
2023-07-05 13:28:00.631447: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:00.648537: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:00.683713: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.1269 seconds and 81.8 Mi memory
2023-07-05 13:28:00.683985: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:00.688153: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:00.692149: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:00.718485: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:00.752557: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:00.763040: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4725 seconds and 3.7 Mi memory
2023-07-05 13:28:00.799712: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:00.821234: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4506 seconds and 3.8 Mi memory
2023-07-05 13:28:00.825314: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.9126 seconds and 51.4 Mi memory
2023-07-05 13:28:00.825556: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:00.836488: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5326 seconds and 3.7 Mi memory
2023-07-05 13:28:00.934061: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4438 seconds and 3.7 Mi memory
2023-07-05 13:28:00.941958: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:00.976246: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.0206 seconds and 70.4 Mi memory
2023-07-05 13:28:00.976483: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:00.980143: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:00.982052: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:01.033990: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0671 seconds and 3.7 Mi memory
2023-07-05 13:28:01.080207: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:01.102767: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.9083 seconds and 3.8 Mi memory
2023-07-05 13:28:01.133156: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4603 seconds and 3.8 Mi memory
2023-07-05 13:28:01.205500: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.0875 seconds and 34.3 Mi memory
2023-07-05 13:28:01.205897: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:01.244136: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:01.249923: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:01.259605: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:01.388298: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2731 seconds and 3.7 Mi memory
2023-07-05 13:28:01.400223: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.8178 seconds and 21.2 Mi memory
2023-07-05 13:28:01.400631: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:01.415844: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8251 seconds and 3.8 Mi memory
2023-07-05 13:28:01.505275: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:01.530987: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:01.563130: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3562 seconds and 3.7 Mi memory
2023-07-05 13:28:01.595123: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:01.599857: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.1496 seconds and 37.7 Mi memory
2023-07-05 13:28:01.600130: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:01.627566: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr6.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6583 seconds and 3.8 Mi memory
2023-07-05 13:28:01.628878: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9441 seconds and 3.7 Mi memory
2023-07-05 13:28:01.731314: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:01.744055: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr22.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:01.759264: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3575 seconds and 3.8 Mi memory
2023-07-05 13:28:01.790551: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:01.815801: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8383 seconds and 3.7 Mi memory
2023-07-05 13:28:01.839650: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.4047 seconds and 94.7 Mi memory
2023-07-05 13:28:01.839908: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:01.901047: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:01.926026: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2937 seconds and 3.7 Mi memory
2023-07-05 13:28:01.965893: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1394 seconds and 3.8 Mi memory
2023-07-05 13:28:01.996168: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3951 seconds and 3.7 Mi memory
2023-07-05 13:28:02.044574: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:02.054492: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:02.144133: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.9679 seconds and 40.0 Mi memory
2023-07-05 13:28:02.144397: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:02.145308: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9946 seconds and 48.2 Mi memory
2023-07-05 13:28:02.145578: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:02.150940: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.7908 seconds and 19.1 Mi memory
2023-07-05 13:28:02.151099: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:02.151203: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:02.450004: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2978 seconds and 3.7 Mi memory
2023-07-05 13:28:02.485082: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:02.551151: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4058 seconds and 3.6 Mi memory
2023-07-05 13:28:02.573050: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6166 seconds and 20.4 Mi memory
2023-07-05 13:28:02.573304: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:02.585802: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:02.772426: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.5014 seconds and 42.3 Mi memory
2023-07-05 13:28:02.772825: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:02.775489: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.4852 seconds and 64.0 Mi memory
2023-07-05 13:28:02.775870: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:02.780541: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6168 seconds and 69.2 Mi memory
2023-07-05 13:28:02.780731: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:02.952518: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.806 seconds and 3.8 Mi memory
2023-07-05 13:28:02.957155: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3829 seconds and 3.8 Mi memory
2023-07-05 13:28:02.997144: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:03.021087: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:03.084786: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.8235 seconds and 50.1 Mi memory
2023-07-05 13:28:03.085061: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:03.095547: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7122 seconds and 36.4 Mi memory
2023-07-05 13:28:03.095904: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:03.203301: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3626 seconds and 3.8 Mi memory
2023-07-05 13:28:03.205516: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8645 seconds and 48.8 Mi memory
2023-07-05 13:28:03.205706: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:03.285626: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:03.344776: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.9779 seconds and 29.2 Mi memory
2023-07-05 13:28:03.345098: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:03.413864: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.758 seconds and 86.7 Mi memory
2023-07-05 13:28:03.414144: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:03.420522: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4748 seconds and 79.9 Mi memory
2023-07-05 13:28:03.420877: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:03.446964: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.8387 seconds and 20.1 Mi memory
2023-07-05 13:28:03.447206: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:03.548967: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.1316 seconds and 31.7 Mi memory
2023-07-05 13:28:03.549236: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:03.572171: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.7709 seconds and 13.4 Mi memory
2023-07-05 13:28:03.572440: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:03.592662: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5066 seconds and 3.8 Mi memory
2023-07-05 13:28:03.626118: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:03.649435: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.0427 seconds and 45.5 Mi memory
2023-07-05 13:28:03.649792: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:03.682628: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.697 seconds and 14.0 Mi memory
2023-07-05 13:28:03.682885: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:03.700643: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9265 seconds and 3.8 Mi memory
2023-07-05 13:28:03.739307: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3927 seconds and 3.7 Mi memory
2023-07-05 13:28:03.742649: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.6608 seconds and 21.1 Mi memory
2023-07-05 13:28:03.742946: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:03.778585: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3217 seconds and 3.7 Mi memory
2023-07-05 13:28:03.780983: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 3.0919 seconds and 20.0 Mi memory
2023-07-05 13:28:03.781253: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:03.797731: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.3404 seconds and 94.2 Mi memory
2023-07-05 13:28:03.797970: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:03.813430: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:03.838868: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:03.846510: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:03.955861: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4057 seconds and 3.7 Mi memory
2023-07-05 13:28:03.964637: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7579 seconds and 3.8 Mi memory
2023-07-05 13:28:03.968364: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.2844 seconds and 3.7 Mi memory
2023-07-05 13:28:03.980261: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.7197 seconds and 25.3 Mi memory
2023-07-05 13:28:03.980539: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:04.000413: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2191 seconds and 3.6 Mi memory
2023-07-05 13:28:04.001413: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:04.021680: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4482 seconds and 3.6 Mi memory
2023-07-05 13:28:04.025641: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:04.032485: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3817 seconds and 3.9 Mi memory
2023-07-05 13:28:04.046140: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2693 seconds and 3.8 Mi memory
2023-07-05 13:28:04.088062: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:04.094784: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:04.102016: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:04.107275: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:04.136390: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3922 seconds and 3.8 Mi memory
2023-07-05 13:28:04.165086: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.9193 seconds and 30.7 Mi memory
2023-07-05 13:28:04.165434: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:04.188188: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:04.193909: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:04.238595: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4565 seconds and 3.6 Mi memory
2023-07-05 13:28:04.281219: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:04.291471: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.9389 seconds and 67.1 Mi memory
2023-07-05 13:28:04.291705: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:04.348882: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3673 seconds and 3.7 Mi memory
2023-07-05 13:28:04.384978: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:04.476888: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr22.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 2.7315 seconds and 15.3 Mi memory
2023-07-05 13:28:04.477161: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr22.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:04.519737: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.423 seconds and 3.7 Mi memory
2023-07-05 13:28:04.521610: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0997 seconds and 3.7 Mi memory
2023-07-05 13:28:04.570311: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.4039 seconds and 3.7 Mi memory
2023-07-05 13:28:04.673398: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:04.710423: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:04.796722: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:04.876797: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr22.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.3987 seconds and 3.7 Mi memory
2023-07-05 13:28:04.911938: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr15.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:04.935039: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1363 seconds and 3.6 Mi memory
2023-07-05 13:28:05.019336: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:05.133543: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7183 seconds and 3.8 Mi memory
2023-07-05 13:28:05.232255: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:05.251656: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7516 seconds and 115.2 Mi memory
2023-07-05 13:28:05.251891: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:05.344805: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0523 seconds and 3.7 Mi memory
2023-07-05 13:28:05.571847: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:05.756111: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.0143 seconds and 62.8 Mi memory
2023-07-05 13:28:05.756381: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:05.817160: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9137 seconds and 41.3 Mi memory
2023-07-05 13:28:05.817407: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:05.838178: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.5396 seconds and 85.6 Mi memory
2023-07-05 13:28:05.838411: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:06.305731: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6805 seconds and 100.0 Mi memory
2023-07-05 13:28:06.305969: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:06.588172: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3355 seconds and 3.8 Mi memory
2023-07-05 13:28:06.691726: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:07.045985: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2277 seconds and 3.7 Mi memory
2023-07-05 13:28:07.096173: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3388 seconds and 3.8 Mi memory
2023-07-05 13:28:07.156686: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3176 seconds and 3.8 Mi memory
2023-07-05 13:28:07.189452: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:07.238686: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:07.269452: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:07.493598: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1581 seconds and 63.6 Mi memory
2023-07-05 13:28:07.493962: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:07.497158: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5064 seconds and 57.3 Mi memory
2023-07-05 13:28:07.497397: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:07.633851: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3271 seconds and 3.6 Mi memory
2023-07-05 13:28:07.654144: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.058 seconds and 57.1 Mi memory
2023-07-05 13:28:07.654537: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:07.762727: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:07.782660: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.0617 seconds and 68.4 Mi memory
2023-07-05 13:28:07.782957: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:07.853689: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.0622 seconds and 54.2 Mi memory
2023-07-05 13:28:07.854089: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:08.082535: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.0269 seconds and 62.7 Mi memory
2023-07-05 13:28:08.082805: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:08.278737: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6232 seconds and 3.7 Mi memory
2023-07-05 13:28:08.354295: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:08.508153: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.0222 seconds and 47.7 Mi memory
2023-07-05 13:28:08.508422: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:08.552483: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9479 seconds and 90.5 Mi memory
2023-07-05 13:28:08.552890: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:08.567145: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9803 seconds and 54.5 Mi memory
2023-07-05 13:28:08.567424: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:08.642053: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7869 seconds and 3.6 Mi memory
2023-07-05 13:28:08.675350: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5917 seconds and 3.7 Mi memory
2023-07-05 13:28:08.733329: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.7545 seconds and 52.1 Mi memory
2023-07-05 13:28:08.733603: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:08.801832: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:08.810406: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr1_KI270709v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:08.820141: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr1_KI270709v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0087 seconds and 3.0 Mi memory
2023-07-05 13:28:08.820280: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr1_KI270709v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:08.824781: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr1_KI270709v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.004 seconds and 3.6 Mi memory
2023-07-05 13:28:08.846171: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:08.873460: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3785 seconds and 3.7 Mi memory
2023-07-05 13:28:08.901322: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9027 seconds and 36.1 Mi memory
2023-07-05 13:28:08.901601: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:08.904420: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4061 seconds and 3.7 Mi memory
2023-07-05 13:28:08.991137: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:09.020052: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2363 seconds and 3.8 Mi memory
2023-07-05 13:28:09.150789: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:09.159653: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:09.315368: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8061 seconds and 3.7 Mi memory
2023-07-05 13:28:09.387074: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8186 seconds and 3.7 Mi memory
2023-07-05 13:28:09.392522: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:09.467392: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7914 seconds and 57.0 Mi memory
2023-07-05 13:28:09.467656: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:09.483649: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:09.486768: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.5843 seconds and 3.8 Mi memory
2023-07-05 13:28:09.554965: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:09.736564: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6614 seconds and 96.2 Mi memory
2023-07-05 13:28:09.736922: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:09.746051: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.7631 seconds and 60.3 Mi memory
2023-07-05 13:28:09.746323: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:09.801654: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0672 seconds and 3.7 Mi memory
2023-07-05 13:28:09.912305: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.0979 seconds and 56.5 Mi memory
2023-07-05 13:28:09.912569: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:09.949542: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.8466 seconds and 54.4 Mi memory
2023-07-05 13:28:09.949925: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:09.985901: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.1461 seconds and 47.7 Mi memory
2023-07-05 13:28:09.986162: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:09.988915: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:10.018163: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.391 seconds and 98.8 Mi memory
2023-07-05 13:28:10.018434: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:10.071282: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9755 seconds and 48.3 Mi memory
2023-07-05 13:28:10.071565: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:10.075486: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.6895 seconds and 53.4 Mi memory
2023-07-05 13:28:10.075886: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:10.116243: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.1139 seconds and 59.9 Mi memory
2023-07-05 13:28:10.116525: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:10.129264: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5754 seconds and 3.8 Mi memory
2023-07-05 13:28:10.141621: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5086 seconds and 95.4 Mi memory
2023-07-05 13:28:10.141991: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:10.176089: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.2773 seconds and 98.2 Mi memory
2023-07-05 13:28:10.176327: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:10.227987: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:10.283666: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.5641 seconds and 57.5 Mi memory
2023-07-05 13:28:10.283897: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:10.344808: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.1498 seconds and 56.8 Mi memory
2023-07-05 13:28:10.345081: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:10.390216: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.6359 seconds and 73.3 Mi memory
2023-07-05 13:28:10.390551: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:10.403150: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.3762 seconds and 54.2 Mi memory
2023-07-05 13:28:10.403550: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:10.409138: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.1269 seconds and 46.4 Mi memory
2023-07-05 13:28:10.409414: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:10.461058: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8111 seconds and 67.9 Mi memory
2023-07-05 13:28:10.461342: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:10.591017: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 5.9164 seconds and 79.2 Mi memory
2023-07-05 13:28:10.591298: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:10.665777: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7522 seconds and 3.7 Mi memory
2023-07-05 13:28:10.706025: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7551 seconds and 3.8 Mi memory
2023-07-05 13:28:10.735460: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5896 seconds and 77.0 Mi memory
2023-07-05 13:28:10.735719: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:10.753691: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:10.762505: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.647 seconds and 84.4 Mi memory
2023-07-05 13:28:10.762744: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:10.778791: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:10.865493: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7479 seconds and 3.6 Mi memory
2023-07-05 13:28:10.903955: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4355 seconds and 3.7 Mi memory
2023-07-05 13:28:10.916205: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9292 seconds and 3.7 Mi memory
2023-07-05 13:28:10.921104: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1738 seconds and 3.6 Mi memory
2023-07-05 13:28:10.945522: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:10.959893: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8874 seconds and 3.8 Mi memory
2023-07-05 13:28:10.983165: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9059 seconds and 3.8 Mi memory
2023-07-05 13:28:10.996397: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.4901 seconds and 62.2 Mi memory
2023-07-05 13:28:10.996795: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:11.033747: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0144 seconds and 3.8 Mi memory
2023-07-05 13:28:11.089195: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6786 seconds and 3.7 Mi memory
2023-07-05 13:28:11.107848: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7618 seconds and 3.8 Mi memory
2023-07-05 13:28:11.115901: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.378 seconds and 3.8 Mi memory
2023-07-05 13:28:11.128580: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:11.132328: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr15.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 6.2195 seconds and 67.0 Mi memory
2023-07-05 13:28:11.132605: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr15.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:11.133684: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:11.178728: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr1_KI270709v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:11.190442: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:11.194339: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr1_KI270709v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0142 seconds and 2.9 Mi memory
2023-07-05 13:28:11.194508: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr1_KI270709v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:11.200106: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:11.202755: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr1_KI270709v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0075 seconds and 3.7 Mi memory
2023-07-05 13:28:11.243992: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.6518 seconds and 3.8 Mi memory
2023-07-05 13:28:11.262579: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:11.263195: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:11.267355: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:11.276947: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.8723 seconds and 3.6 Mi memory
2023-07-05 13:28:11.286329: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.5541 seconds and 81.3 Mi memory
2023-07-05 13:28:11.286562: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:11.323266: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.7402 seconds and 68.6 Mi memory
2023-07-05 13:28:11.323512: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:11.328763: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chrUn_KI270442v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:11.330555: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5772 seconds and 57.8 Mi memory
2023-07-05 13:28:11.330796: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:11.339131: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:11.340063: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6468 seconds and 57.3 Mi memory
2023-07-05 13:28:11.340264: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:11.350592: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:11.350649: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:11.397496: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4547 seconds and 79.9 Mi memory
2023-07-05 13:28:11.397743: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:11.420829: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chrUn_KI270442v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0906 seconds and 3.2 Mi memory
2023-07-05 13:28:11.420959: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.519 seconds and 81.0 Mi memory
2023-07-05 13:28:11.421061: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chrUn_KI270442v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:11.421193: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:11.439087: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chrUn_KI270442v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0174 seconds and 3.8 Mi memory
2023-07-05 13:28:11.512694: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5317 seconds and 78.4 Mi memory
2023-07-05 13:28:11.513047: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:11.514308: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3371 seconds and 3.7 Mi memory
2023-07-05 13:28:11.561052: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2762 seconds and 3.7 Mi memory
2023-07-05 13:28:11.575263: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:11.693416: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5502 seconds and 3.8 Mi memory
2023-07-05 13:28:11.706948: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:11.709711: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3d/6dd0/tmppdsdt3je/HG01928.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3181 seconds and 3.6 Mi memory
2023-07-05 13:28:11.812114: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3499 seconds and 3.7 Mi memory
2023-07-05 13:28:11.849022: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5981 seconds and 141.6 Mi memory
2023-07-05 13:28:11.849256: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:11.851361: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr15.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.7175 seconds and 3.8 Mi memory
2023-07-05 13:28:11.865074: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:11.975717: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:11.990946: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr12.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:12.105077: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1074 seconds and 3.8 Mi memory
2023-07-05 13:28:12.126411: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:12.146716: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8e/5c62/tmpu4sywyn2/HG02486.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.383 seconds and 3.8 Mi memory
2023-07-05 13:28:12.176376: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6436 seconds and 66.2 Mi memory
2023-07-05 13:28:12.176627: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:12.268514: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5317 seconds and 3.7 Mi memory
2023-07-05 13:28:12.286493: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:12.614521: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3272 seconds and 3.7 Mi memory
2023-07-05 13:28:12.618461: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:12.674012: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3497 seconds and 3.8 Mi memory
2023-07-05 13:28:12.704619: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3729 seconds and 3.8 Mi memory
2023-07-05 13:28:12.787522: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3655 seconds and 3.7 Mi memory
2023-07-05 13:28:12.791933: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:12.815443: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.7697 seconds and 89.2 Mi memory
2023-07-05 13:28:12.815726: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:12.867067: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chrUn_KI270442v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:12.887495: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5465 seconds and 3.6 Mi memory
2023-07-05 13:28:12.897475: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4989 seconds and 3.7 Mi memory
2023-07-05 13:28:12.932394: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:12.938628: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chrUn_KI270442v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0708 seconds and 3.2 Mi memory
2023-07-05 13:28:12.938810: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chrUn_KI270442v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:12.960647: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chrUn_KI270442v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0213 seconds and 3.7 Mi memory
2023-07-05 13:28:12.983644: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4697 seconds and 3.7 Mi memory
2023-07-05 13:28:13.073564: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.0511 seconds and 47.6 Mi memory
2023-07-05 13:28:13.073838: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:13.076709: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:13.082651: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2327 seconds and 3.7 Mi memory
2023-07-05 13:28:13.170225: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:13.191809: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:13.215815: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:13.258858: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:13.341952: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:13.470969: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2934 seconds and 3.7 Mi memory
2023-07-05 13:28:13.546251: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.6985 seconds and 67.4 Mi memory
2023-07-05 13:28:13.546525: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:13.705878: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:13.839355: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5529 seconds and 139.2 Mi memory
2023-07-05 13:28:13.839601: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:13.843402: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.7544 seconds and 81.3 Mi memory
2023-07-05 13:28:13.843597: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:13.898153: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.7459 seconds and 63.2 Mi memory
2023-07-05 13:28:13.898402: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:13.912476: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.096 seconds and 3.7 Mi memory
2023-07-05 13:28:14.182962: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:14.487529: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.3794 seconds and 60.9 Mi memory
2023-07-05 13:28:14.487780: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:14.831472: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.7567 seconds and 3.8 Mi memory
2023-07-05 13:28:14.920619: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0803 seconds and 3.7 Mi memory
2023-07-05 13:28:14.937258: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:14.942424: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.395 seconds and 3.7 Mi memory
2023-07-05 13:28:14.991914: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1476 seconds and 3.7 Mi memory
2023-07-05 13:28:15.030066: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d83/64bc/tmp0avd9w49/HG01358.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1309 seconds and 3.8 Mi memory
2023-07-05 13:28:15.104462: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:15.119497: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.9293 seconds and 61.9 Mi memory
2023-07-05 13:28:15.119736: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:15.154829: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:15.254131: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:15.283442: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5717 seconds and 73.0 Mi memory
2023-07-05 13:28:15.283677: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:15.506665: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.018 seconds and 3.8 Mi memory
2023-07-05 13:28:15.656330: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6361 seconds and 76.1 Mi memory
2023-07-05 13:28:15.656694: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:15.705126: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:15.860619: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.0629 seconds and 55.4 Mi memory
2023-07-05 13:28:15.860863: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:16.185345: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.9521 seconds and 97.7 Mi memory
2023-07-05 13:28:16.185622: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:16.559937: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4394 seconds and 3.7 Mi memory
2023-07-05 13:28:16.653167: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9955 seconds and 3.8 Mi memory
2023-07-05 13:28:16.675252: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3908 seconds and 3.8 Mi memory
2023-07-05 13:28:16.710651: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.1379 seconds and 91.8 Mi memory
2023-07-05 13:28:16.710884: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:16.882829: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:16.960627: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6f40/9e7a/tmppwryzozv/HG02055.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0989 seconds and 3.7 Mi memory
2023-07-05 13:28:17.106693: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:17.113747: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:17.398341: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2117 seconds and 3.8 Mi memory
2023-07-05 13:28:17.543162: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.8504 seconds and 73.0 Mi memory
2023-07-05 13:28:17.543520: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:17.632768: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4422 seconds and 44.7 Mi memory
2023-07-05 13:28:17.633005: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:17.658361: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:17.876778: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6062 seconds and 57.2 Mi memory
2023-07-05 13:28:17.877024: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:17.965258: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.7244 seconds and 53.7 Mi memory
2023-07-05 13:28:17.965529: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:18.045993: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.2824 seconds and 55.2 Mi memory
2023-07-05 13:28:18.046228: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:18.194500: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8392 seconds and 78.1 Mi memory
2023-07-05 13:28:18.194792: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:18.301334: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca3c/7a47/tmpj87aeomg/HG01123.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5895 seconds and 3.6 Mi memory
2023-07-05 13:28:18.687311: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1429 seconds and 3.6 Mi memory
2023-07-05 13:28:18.763696: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9608 seconds and 81.3 Mi memory
2023-07-05 13:28:18.763976: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:18.885383: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:18.944558: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0667 seconds and 3.8 Mi memory
2023-07-05 13:28:18.967585: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1207 seconds and 84.8 Mi memory
2023-07-05 13:28:18.968004: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:19.048063: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0816 seconds and 3.9 Mi memory
2023-07-05 13:28:19.048070: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4142 seconds and 3.7 Mi memory
2023-07-05 13:28:19.076582: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:19.142218: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9465 seconds and 3.7 Mi memory
2023-07-05 13:28:19.259058: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8653 seconds and 85.1 Mi memory
2023-07-05 13:28:19.259445: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:19.284778: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:19.409443: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9248 seconds and 124.1 Mi memory
2023-07-05 13:28:19.409836: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:19.443843: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:19.454910: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.408 seconds and 3.7 Mi memory
2023-07-05 13:28:19.456589: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:19.600342: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.0442 seconds and 107.1 Mi memory
2023-07-05 13:28:19.600620: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:19.637010: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:19.905852: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.9136 seconds and 59.3 Mi memory
2023-07-05 13:28:19.906255: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:20.054947: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0859 seconds and 3.7 Mi memory
2023-07-05 13:28:20.068087: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.9074 seconds and 58.3 Mi memory
2023-07-05 13:28:20.068357: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:20.135065: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3701 seconds and 3.8 Mi memory
2023-07-05 13:28:20.172123: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:20.255071: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:20.506988: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.355 seconds and 55.4 Mi memory
2023-07-05 13:28:20.507367: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:20.522239: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9206 seconds and 3.7 Mi memory
2023-07-05 13:28:20.560867: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.15 seconds and 3.8 Mi memory
2023-07-05 13:28:20.600317: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3398 seconds and 3.7 Mi memory
2023-07-05 13:28:20.602261: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:20.676799: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:20.687657: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:20.805646: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.0509 seconds and 40.0 Mi memory
2023-07-05 13:28:20.805916: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:20.916677: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1368 seconds and 119.4 Mi memory
2023-07-05 13:28:20.916935: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:21.104012: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8397 seconds and 64.7 Mi memory
2023-07-05 13:28:21.104406: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:21.124355: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1777 seconds and 120.5 Mi memory
2023-07-05 13:28:21.124755: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:21.142722: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.0076 seconds and 81.2 Mi memory
2023-07-05 13:28:21.143015: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:21.153976: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8905 seconds and 128.7 Mi memory
2023-07-05 13:28:21.154263: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:21.204810: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.8645 seconds and 60.1 Mi memory
2023-07-05 13:28:21.205160: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:21.253839: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9786 seconds and 62.1 Mi memory
2023-07-05 13:28:21.254213: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:21.322594: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1921 seconds and 68.9 Mi memory
2023-07-05 13:28:21.323096: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:21.335999: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1347 seconds and 81.3 Mi memory
2023-07-05 13:28:21.336272: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:21.351715: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.1226 seconds and 41.8 Mi memory
2023-07-05 13:28:21.351998: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:21.443540: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.0918 seconds and 84.5 Mi memory
2023-07-05 13:28:21.443808: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:21.487183: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5799 seconds and 3.8 Mi memory
2023-07-05 13:28:21.524630: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4553 seconds and 3.8 Mi memory
2023-07-05 13:28:21.612875: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd83/4c60/tmp_d2bbv_u/HG01106.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1046 seconds and 3.8 Mi memory
2023-07-05 13:28:21.726071: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chrUn_KI270442v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:21.737907: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chrUn_KI270442v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0107 seconds and 3.1 Mi memory
2023-07-05 13:28:21.738081: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chrUn_KI270442v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:21.743664: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chrUn_KI270442v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0051 seconds and 3.8 Mi memory
2023-07-05 13:28:21.873797: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:21.894140: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr12.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 9.9018 seconds and 82.6 Mi memory
2023-07-05 13:28:21.894424: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr12.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:21.937656: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.9478 seconds and 56.8 Mi memory
2023-07-05 13:28:21.937935: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:21.976493: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.7849 seconds and 52.1 Mi memory
2023-07-05 13:28:21.976774: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:22.033480: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:22.085632: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.3776 seconds and 57.8 Mi memory
2023-07-05 13:28:22.085874: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:22.099068: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2921 seconds and 3.7 Mi memory
2023-07-05 13:28:22.259245: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:22.336706: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0815 seconds and 3.8 Mi memory
2023-07-05 13:28:22.435973: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:22.453128: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3074 seconds and 3.7 Mi memory
2023-07-05 13:28:22.502779: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3477 seconds and 3.8 Mi memory
2023-07-05 13:28:22.511197: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3854 seconds and 3.7 Mi memory
2023-07-05 13:28:22.568720: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.6485 seconds and 3.7 Mi memory
2023-07-05 13:28:22.578597: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2546 seconds and 3.8 Mi memory
2023-07-05 13:28:22.584172: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:22.584872: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.14 seconds and 3.7 Mi memory
2023-07-05 13:28:22.590019: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2527 seconds and 3.7 Mi memory
2023-07-05 13:28:22.610655: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5053 seconds and 3.6 Mi memory
2023-07-05 13:28:22.612265: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270510v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:22.620978: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270510v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0079 seconds and 3.0 Mi memory
2023-07-05 13:28:22.621121: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270510v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:22.625886: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270510v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0043 seconds and 3.6 Mi memory
2023-07-05 13:28:22.668882: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:22.689294: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:22.699432: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4933 seconds and 3.8 Mi memory
2023-07-05 13:28:22.848191: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:22.848225: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:22.851830: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:22.857676: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:22.864541: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:22.882841: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:22.900533: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.3244 seconds and 152.5 Mi memory
2023-07-05 13:28:22.900864: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:22.938459: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5856 seconds and 3.6 Mi memory
2023-07-05 13:28:22.949609: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.9729 seconds and 94.4 Mi memory
2023-07-05 13:28:22.949895: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:23.005658: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.716 seconds and 75.6 Mi memory
2023-07-05 13:28:23.006045: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:23.051233: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chrUn_KI270442v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:23.167854: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chrUn_KI270442v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.1157 seconds and 3.2 Mi memory
2023-07-05 13:28:23.168147: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chrUn_KI270442v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:23.184457: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chrUn_KI270442v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0157 seconds and 3.7 Mi memory
2023-07-05 13:28:23.200921: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.0733 seconds and 95.9 Mi memory
2023-07-05 13:28:23.201172: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:23.205023: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.853 seconds and 55.5 Mi memory
2023-07-05 13:28:23.205300: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:23.296994: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2102 seconds and 3.6 Mi memory
2023-07-05 13:28:23.312717: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:23.367815: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.5017 seconds and 81.8 Mi memory
2023-07-05 13:28:23.368062: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:23.394844: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/38a3/798b/tmpcrkvqn6u/HG03098.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4561 seconds and 3.7 Mi memory
2023-07-05 13:28:23.403941: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4263 seconds and 3.8 Mi memory
2023-07-05 13:28:23.417320: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr12.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5218 seconds and 3.8 Mi memory
2023-07-05 13:28:23.539959: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6065 seconds and 58.8 Mi memory
2023-07-05 13:28:23.540197: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:23.550888: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr8.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:23.625304: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.8322 seconds and 137.9 Mi memory
2023-07-05 13:28:23.625563: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:23.733557: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:23.833377: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:24.068575: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.4492 seconds and 50.3 Mi memory
2023-07-05 13:28:24.068816: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:24.084666: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.7418 seconds and 91.5 Mi memory
2023-07-05 13:28:24.084898: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:24.264853: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e068/435b/tmpnd_18w64/HG01258.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3631 seconds and 3.7 Mi memory
2023-07-05 13:28:24.419116: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4684 seconds and 3.8 Mi memory
2023-07-05 13:28:24.425351: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.2543 seconds and 84.8 Mi memory
2023-07-05 13:28:24.425657: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:24.439969: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4331 seconds and 3.9 Mi memory
2023-07-05 13:28:24.456766: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.3788 seconds and 41.0 Mi memory
2023-07-05 13:28:24.456998: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:24.512131: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9bf8/f912/tmpj0ozzomc/HG01952.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3059 seconds and 3.7 Mi memory
2023-07-05 13:28:24.531889: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.272 seconds and 126.3 Mi memory
2023-07-05 13:28:24.532220: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:24.544898: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.352 seconds and 102.9 Mi memory
2023-07-05 13:28:24.545257: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:24.646648: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4c25/6bb5/tmpiivjywth/HG00735.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4447 seconds and 3.7 Mi memory
2023-07-05 13:28:24.666543: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0402 seconds and 3.7 Mi memory
2023-07-05 13:28:24.799934: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2587 seconds and 3.8 Mi memory
2023-07-05 13:28:24.824565: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:24.858916: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:24.884994: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.668 seconds and 54.5 Mi memory
2023-07-05 13:28:24.885236: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:24.955501: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9756/3aaa/tmpsmto5tki/HG01952.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5866 seconds and 3.7 Mi memory
2023-07-05 13:28:25.072902: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:25.128859: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.4217 seconds and 54.7 Mi memory
2023-07-05 13:28:25.129130: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:25.194752: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:25.272026: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.3339 seconds and 58.3 Mi memory
2023-07-05 13:28:25.272295: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:25.411521: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7244/c13e/tmpva63mlle/HG02080.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.342 seconds and 3.7 Mi memory
2023-07-05 13:28:25.460110: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.276 seconds and 56.2 Mi memory
2023-07-05 13:28:25.460371: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:25.517183: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.3614 seconds and 56.5 Mi memory
2023-07-05 13:28:25.517565: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:25.645800: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5404 seconds and 77.6 Mi memory
2023-07-05 13:28:25.646075: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:25.655206: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7af7/689f/tmpbjwvo90m/HG00741.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5696 seconds and 3.6 Mi memory
2023-07-05 13:28:25.828876: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5738 seconds and 86.4 Mi memory
2023-07-05 13:28:25.829130: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:25.878318: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b51/8974/tmpl8yz7f5w/HG01071.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3452 seconds and 3.7 Mi memory
2023-07-05 13:28:25.928442: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5019 seconds and 3.8 Mi memory
2023-07-05 13:28:25.981584: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b51e/72dc/tmp4ibzow66/NA20129.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5237 seconds and 3.8 Mi memory
2023-07-05 13:28:26.146026: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/da04/2f64/tmpm0ieuo37/HG00438.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5998 seconds and 3.8 Mi memory
2023-07-05 13:28:26.194440: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr22_KI270733v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:26.210912: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/chr22_KI270733v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0156 seconds and 3.0 Mi memory
2023-07-05 13:28:26.211086: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr22_KI270733v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:26.219670: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5590/4a73/tmpyxfq9p1k/HG00733.2_chr22_KI270733v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0082 seconds and 3.8 Mi memory
2023-07-05 13:28:26.453896: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfa/3fe4/tmpng72_j5q/HG03540.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5678 seconds and 3.8 Mi memory
2023-07-05 13:28:26.525132: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ff48/1089/tmpsjntmnjn/HG01109.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.395 seconds and 3.7 Mi memory
2023-07-05 13:28:26.722148: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4489 seconds and 3.7 Mi memory
2023-07-05 13:28:26.756812: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.0509 seconds and 59.3 Mi memory
2023-07-05 13:28:26.757062: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:26.834206: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1873 seconds and 3.7 Mi memory
2023-07-05 13:28:26.865596: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.347 seconds and 3.6 Mi memory
2023-07-05 13:28:26.926732: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2762/020d/tmpjolae_5h/HG01891.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0968 seconds and 3.7 Mi memory
2023-07-05 13:28:27.000849: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1311/bf7f/tmply_edpx_/HG01361.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5397 seconds and 3.7 Mi memory
2023-07-05 13:28:27.169265: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:27.255825: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:27.275267: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:27.839737: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.082 seconds and 3.7 Mi memory
2023-07-05 13:28:27.898786: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.015 seconds and 85.0 Mi memory
2023-07-05 13:28:27.899175: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:28.000580: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr22_KI270733v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:28.007618: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/chr22_KI270733v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0064 seconds and 3.1 Mi memory
2023-07-05 13:28:28.007752: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr22_KI270733v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:28.012196: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d07/b53e/tmpfhm6wg40/HG03098.2_chr22_KI270733v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.004 seconds and 3.8 Mi memory
2023-07-05 13:28:28.211524: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.1037 seconds and 86.2 Mi memory
2023-07-05 13:28:28.211880: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:28.348633: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.2337 seconds and 64.1 Mi memory
2023-07-05 13:28:28.349001: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:28.947554: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.2881 seconds and 89.0 Mi memory
2023-07-05 13:28:28.947917: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:28.982426: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1cab/b7c3/tmpfkk_ipjj/HG02886.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0822 seconds and 3.8 Mi memory
2023-07-05 13:28:29.315427: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9526/71e8/tmp4rhi298a/HG03516.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1027 seconds and 3.7 Mi memory
2023-07-05 13:28:29.429605: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0798 seconds and 3.7 Mi memory
2023-07-05 13:28:29.690963: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr22_KI270733v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:29.713859: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.428 seconds and 59.6 Mi memory
2023-07-05 13:28:29.714137: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:29.727155: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/chr22_KI270733v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0352 seconds and 3.0 Mi memory
2023-07-05 13:28:29.727447: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr22_KI270733v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:29.734438: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4cd0/a8ef/tmp1u_s4s38/HG02572.2_chr22_KI270733v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0064 seconds and 3.7 Mi memory
2023-07-05 13:28:29.959586: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.0734 seconds and 85.4 Mi memory
2023-07-05 13:28:29.959834: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:30.088050: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.0106 seconds and 61.9 Mi memory
2023-07-05 13:28:30.088386: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:30.398449: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1421 seconds and 53.7 Mi memory
2023-07-05 13:28:30.398849: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:30.461401: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.0163 seconds and 68.2 Mi memory
2023-07-05 13:28:30.461772: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:30.467077: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5179 seconds and 3.6 Mi memory
2023-07-05 13:28:30.585955: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.9478 seconds and 55.4 Mi memory
2023-07-05 13:28:30.586207: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:30.606700: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4334 seconds and 86.1 Mi memory
2023-07-05 13:28:30.607002: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:30.634002: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.1763 seconds and 34.1 Mi memory
2023-07-05 13:28:30.634301: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:30.649445: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr22_KI270733v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:30.657987: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/chr22_KI270733v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0075 seconds and 3.1 Mi memory
2023-07-05 13:28:30.658135: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr22_KI270733v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:30.662879: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f267/10e6/tmpxrkhyty0/HG01258.1_chr22_KI270733v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0043 seconds and 3.7 Mi memory
2023-07-05 13:28:30.712149: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9971 seconds and 3.6 Mi memory
2023-07-05 13:28:30.965119: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:30.970843: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.3676 seconds and 58.5 Mi memory
2023-07-05 13:28:30.971154: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:31.092518: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4039 seconds and 69.1 Mi memory
2023-07-05 13:28:31.092779: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:31.239399: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5614 seconds and 131.5 Mi memory
2023-07-05 13:28:31.239797: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:31.404736: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8e85/ef94/tmp9d66z2t0/HG02622.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3154 seconds and 3.7 Mi memory
2023-07-05 13:28:31.467724: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5593/eabf/tmp192jq_sv/HG01978.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5071 seconds and 3.7 Mi memory
2023-07-05 13:28:31.677412: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1655/73cc/tmpi4ow1ltu/HG02055.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0904 seconds and 3.7 Mi memory
2023-07-05 13:28:31.754155: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7cad/b3a3/tmpghgfxded/HG01243.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1189 seconds and 3.7 Mi memory
2023-07-05 13:28:31.775790: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3758 seconds and 3.7 Mi memory
2023-07-05 13:28:31.933151: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chrUn_KI270442v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:31.989312: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/44a8/896b/tmp5bw4bzlt/HG03453.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5266 seconds and 3.7 Mi memory
2023-07-05 13:28:31.998010: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.026 seconds and 3.7 Mi memory
2023-07-05 13:28:32.017818: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chrUn_KI270442v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0834 seconds and 3.2 Mi memory
2023-07-05 13:28:32.018089: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chrUn_KI270442v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:32.034081: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chrUn_KI270442v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0151 seconds and 3.7 Mi memory
2023-07-05 13:28:32.044119: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4361 seconds and 3.6 Mi memory
2023-07-05 13:28:32.233387: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.9926 seconds and 3.8 Mi memory
2023-07-05 13:28:32.287272: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:32.389433: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2958 seconds and 3.7 Mi memory
2023-07-05 13:28:32.444507: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.183 seconds and 57.1 Mi memory
2023-07-05 13:28:32.444766: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:32.496366: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:32.506908: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:32.657505: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:32.721826: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:32.828148: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.1376 seconds and 86.1 Mi memory
2023-07-05 13:28:32.828553: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:32.834803: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.3978 seconds and 64.5 Mi memory
2023-07-05 13:28:32.835097: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:32.852646: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.2673 seconds and 78.1 Mi memory
2023-07-05 13:28:32.853033: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:33.028658: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.3591 seconds and 140.1 Mi memory
2023-07-05 13:28:33.028935: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:33.029254: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.154 seconds and 47.6 Mi memory
2023-07-05 13:28:33.029647: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:33.050306: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.2008 seconds and 77.9 Mi memory
2023-07-05 13:28:33.050517: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:33.096945: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.2477 seconds and 58.8 Mi memory
2023-07-05 13:28:33.097216: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:33.155699: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.2967 seconds and 134.9 Mi memory
2023-07-05 13:28:33.156092: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:33.245429: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.3794 seconds and 49.0 Mi memory
2023-07-05 13:28:33.245713: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:33.305541: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4215 seconds and 59.1 Mi memory
2023-07-05 13:28:33.305819: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:33.381971: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.5288 seconds and 67.1 Mi memory
2023-07-05 13:28:33.382379: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:33.494179: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.4598 seconds and 59.3 Mi memory
2023-07-05 13:28:33.494554: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:33.538746: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0929 seconds and 3.7 Mi memory
2023-07-05 13:28:33.667185: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chrUn_KI270442v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:33.696648: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chrUn_KI270442v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0282 seconds and 3.1 Mi memory
2023-07-05 13:28:33.696834: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chrUn_KI270442v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:33.704401: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chrUn_KI270442v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.007 seconds and 3.7 Mi memory
2023-07-05 13:28:33.826730: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:33.937050: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr8.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.3849 seconds and 55.4 Mi memory
2023-07-05 13:28:33.937428: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr8.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:34.265315: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.214 seconds and 3.7 Mi memory
2023-07-05 13:28:34.277037: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4474 seconds and 3.8 Mi memory
2023-07-05 13:28:34.290316: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4542 seconds and 3.7 Mi memory
2023-07-05 13:28:34.365255: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3344 seconds and 3.7 Mi memory
2023-07-05 13:28:34.367486: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5135 seconds and 3.8 Mi memory
2023-07-05 13:28:34.368464: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 11.0551 seconds and 47.5 Mi memory
2023-07-05 13:28:34.368752: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:34.386936: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2297 seconds and 3.8 Mi memory
2023-07-05 13:28:34.444366: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1977 seconds and 3.7 Mi memory
2023-07-05 13:28:34.459152: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3609 seconds and 3.8 Mi memory
2023-07-05 13:28:34.498443: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1149 seconds and 3.7 Mi memory
2023-07-05 13:28:34.517824: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4881 seconds and 3.6 Mi memory
2023-07-05 13:28:34.575599: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.8408 seconds and 54.7 Mi memory
2023-07-05 13:28:34.575995: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:34.717269: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4104 seconds and 3.6 Mi memory
2023-07-05 13:28:34.727901: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chrUn_KI270442v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:34.728051: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270521v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:34.737957: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270521v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.009 seconds and 3.1 Mi memory
2023-07-05 13:28:34.738120: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270521v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:34.743372: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270521v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0047 seconds and 3.6 Mi memory
2023-07-05 13:28:34.782273: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr22_KI270733v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:34.799238: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270442v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:34.802054: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/chr22_KI270733v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0186 seconds and 3.1 Mi memory
2023-07-05 13:28:34.802237: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr22_KI270733v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:34.807388: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.9719 seconds and 59.6 Mi memory
2023-07-05 13:28:34.807652: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:34.809454: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9ff9/40a9/tmphbrxlt5b/HG03579.1_chr22_KI270733v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0067 seconds and 3.8 Mi memory
2023-07-05 13:28:34.818220: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chrUn_KI270442v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0891 seconds and 3.2 Mi memory
2023-07-05 13:28:34.818488: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chrUn_KI270442v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:34.827239: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270442v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0273 seconds and 3.1 Mi memory
2023-07-05 13:28:34.827400: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270442v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:34.833001: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chrUn_KI270442v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0138 seconds and 3.8 Mi memory
2023-07-05 13:28:34.834557: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270442v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0067 seconds and 3.8 Mi memory
2023-07-05 13:28:34.848166: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:34.849672: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c316/6e64/tmpwcl3oekj/HG02148.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3542 seconds and 3.8 Mi memory
2023-07-05 13:28:34.879180: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270579v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:34.883391: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:34.884545: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:34.886086: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270579v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0064 seconds and 3.0 Mi memory
2023-07-05 13:28:34.886217: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270579v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:34.891446: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270579v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0048 seconds and 3.7 Mi memory
2023-07-05 13:28:34.939494: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270320v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:34.948667: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270320v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0087 seconds and 3.1 Mi memory
2023-07-05 13:28:34.948786: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270320v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:34.954279: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270320v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0051 seconds and 3.9 Mi memory
2023-07-05 13:28:34.960978: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr8.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0222 seconds and 3.6 Mi memory
2023-07-05 13:28:34.972445: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:34.975905: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270590v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:34.981357: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270590v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.005 seconds and 3.2 Mi memory
2023-07-05 13:28:34.981475: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270590v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:34.983303: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:34.985927: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270590v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.004 seconds and 3.7 Mi memory
2023-07-05 13:28:34.994508: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:34.997858: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:35.024937: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270544v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:35.029626: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270544v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0042 seconds and 3.0 Mi memory
2023-07-05 13:28:35.029747: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270544v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:35.033778: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270544v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0036 seconds and 3.8 Mi memory
2023-07-05 13:28:35.076113: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270425v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:35.080593: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:35.081322: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270425v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0047 seconds and 3.1 Mi memory
2023-07-05 13:28:35.081442: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270425v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:35.085762: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270425v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0039 seconds and 3.8 Mi memory
2023-07-05 13:28:35.087499: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:35.127267: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270389v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:35.134138: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270389v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0064 seconds and 3.1 Mi memory
2023-07-05 13:28:35.134257: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270389v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:35.138501: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270389v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0038 seconds and 3.8 Mi memory
2023-07-05 13:28:35.180809: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:35.264285: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr7.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:35.448327: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/516e/220f/tmpv3pbnsm5/HG02080.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0788 seconds and 3.7 Mi memory
2023-07-05 13:28:35.656289: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/305a/5b14/tmpi9u4t4rx/HG01928.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0791 seconds and 3.7 Mi memory
2023-07-05 13:28:35.692335: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.8667 seconds and 57.2 Mi memory
2023-07-05 13:28:35.692625: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:35.759528: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.8996 seconds and 63.1 Mi memory
2023-07-05 13:28:35.759946: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:35.810683: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.7366 seconds and 53.6 Mi memory
2023-07-05 13:28:35.810971: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:35.995805: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c892/bad4/tmpzclqx02c/HG03453.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1873 seconds and 3.6 Mi memory
2023-07-05 13:28:36.038318: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.8418 seconds and 57.5 Mi memory
2023-07-05 13:28:36.038566: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:37.096823: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b149/36eb/tmptn_d5e3s/HG01106.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.2851 seconds and 3.8 Mi memory
2023-07-05 13:28:37.117914: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bac8/cb07/tmpaikt7m3x/HG01891.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0784 seconds and 3.7 Mi memory
2023-07-05 13:28:37.253777: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e9bb/74dc/tmpti1ij_fr/HG01109.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5602 seconds and 3.6 Mi memory
2023-07-05 13:28:37.264952: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1769/fbc9/tmpwlxhtbep/HG02630.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5041 seconds and 3.8 Mi memory
2023-07-05 13:28:37.967538: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6911 seconds and 45.7 Mi memory
2023-07-05 13:28:37.967905: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:37.970800: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.8005 seconds and 46.9 Mi memory
2023-07-05 13:28:37.971099: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:38.065387: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.8085 seconds and 43.5 Mi memory
2023-07-05 13:28:38.065793: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:39.059984: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.088 seconds and 3.7 Mi memory
2023-07-05 13:28:39.129958: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0632 seconds and 3.8 Mi memory
2023-07-05 13:28:39.437534: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dc59/a56d/tmp6zl2su1w/HG03486.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4687 seconds and 3.7 Mi memory
2023-07-05 13:28:39.479099: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr22_KI270733v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:39.509239: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/chr22_KI270733v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.029 seconds and 2.9 Mi memory
2023-07-05 13:28:39.509415: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr22_KI270733v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:39.517076: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/03a9/8e19/tmpf77kwryj/HG01175.1_chr22_KI270733v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0072 seconds and 3.7 Mi memory
2023-07-05 13:28:39.579626: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr22_KI270733v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:39.604440: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chr22_KI270733v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0235 seconds and 3.1 Mi memory
2023-07-05 13:28:39.604603: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr22_KI270733v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:39.609843: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chr22_KI270733v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0048 seconds and 3.7 Mi memory
2023-07-05 13:28:39.672847: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chrUn_GL000220v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:39.678853: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/chrUn_GL000220v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0055 seconds and 3.1 Mi memory
2023-07-05 13:28:39.679004: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chrUn_GL000220v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:39.683030: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6e71/60e9/tmp3ox2vodg/HG02723.1_chrUn_GL000220v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0036 seconds and 3.8 Mi memory
2023-07-05 13:28:41.657079: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6906 seconds and 59.3 Mi memory
2023-07-05 13:28:41.657365: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:42.710059: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fe7/8c83/tmpcpmfv251/HG03516.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0517 seconds and 3.7 Mi memory
2023-07-05 13:28:43.001708: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.7129 seconds and 55.2 Mi memory
2023-07-05 13:28:43.002122: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:43.237330: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.7394 seconds and 79.7 Mi memory
2023-07-05 13:28:43.237611: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:43.334761: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6761 seconds and 54.4 Mi memory
2023-07-05 13:28:43.335187: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:43.425191: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.9171 seconds and 63.4 Mi memory
2023-07-05 13:28:43.425500: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:43.485465: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.7625 seconds and 54.5 Mi memory
2023-07-05 13:28:43.485737: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:44.056541: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0534 seconds and 3.8 Mi memory
2023-07-05 13:28:44.225179: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr22_KI270733v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:44.236842: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/chr22_KI270733v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0106 seconds and 2.9 Mi memory
2023-07-05 13:28:44.236998: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr22_KI270733v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:44.241918: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5bea/c966/tmpkdwuqvh4/HG02148.1_chr22_KI270733v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0044 seconds and 3.8 Mi memory
2023-07-05 13:28:44.545809: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/27f5/e5e1/tmpqlp1qw37/HG01175.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0592 seconds and 3.7 Mi memory
2023-07-05 13:28:44.613422: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.786 seconds and 52.9 Mi memory
2023-07-05 13:28:44.613685: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:44.707899: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/43e7/bde3/tmpk_oksvd0/HG01123.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4694 seconds and 3.7 Mi memory
2023-07-05 13:28:44.866047: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbd1/7eff/tmpfg5n5xa8/HG00438.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5297 seconds and 3.8 Mi memory
2023-07-05 13:28:44.947352: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a28a/efe1/tmpojkyki20/HG02257.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5208 seconds and 3.7 Mi memory
2023-07-05 13:28:45.319860: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4334 seconds and 55.4 Mi memory
2023-07-05 13:28:45.320125: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:45.463063: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4894 seconds and 54.4 Mi memory
2023-07-05 13:28:45.463352: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:45.472211: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6229 seconds and 61.6 Mi memory
2023-07-05 13:28:45.472243: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.4764 seconds and 81.2 Mi memory
2023-07-05 13:28:45.472485: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:45.472528: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:45.546343: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6616 seconds and 86.1 Mi memory
2023-07-05 13:28:45.546610: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:45.575631: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.494 seconds and 43.4 Mi memory
2023-07-05 13:28:45.576028: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:45.633449: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.634 seconds and 55.5 Mi memory
2023-07-05 13:28:45.633735: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:45.655623: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6703 seconds and 78.6 Mi memory
2023-07-05 13:28:45.655914: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:45.755958: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6672 seconds and 84.1 Mi memory
2023-07-05 13:28:45.756244: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:45.792790: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6113 seconds and 153.7 Mi memory
2023-07-05 13:28:45.793063: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:45.872265: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/chr7.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 10.6068 seconds and 55.7 Mi memory
2023-07-05 13:28:45.872555: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr7.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:45.914808: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1506/27fc/tmpl90yftog/HG02145.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.3001 seconds and 3.8 Mi memory
2023-07-05 13:28:46.471261: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.1501 seconds and 3.6 Mi memory
2023-07-05 13:28:46.540900: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9dfc/3591/tmp1yq1b4rf/HG01978.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0674 seconds and 3.8 Mi memory
2023-07-05 13:28:46.624807: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr22_KI270733v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:46.636124: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/chr22_KI270733v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0104 seconds and 3.0 Mi memory
2023-07-05 13:28:46.636262: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr22_KI270733v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:46.641050: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a5f0/7af4/tmpr6ejslcc/HG00673.2_chr22_KI270733v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0043 seconds and 3.7 Mi memory
2023-07-05 13:28:46.841047: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9803/9810/tmp4vazh4m3/HG03579.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.206 seconds and 3.6 Mi memory
2023-07-05 13:28:46.864442: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0706 seconds and 3.8 Mi memory
2023-07-05 13:28:46.929633: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d62f/4832/tmpatt4g6yu/NA18906.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.0561 seconds and 3.7 Mi memory
2023-07-05 13:28:46.970001: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/834c/f014/tmp073cvcqv/HG00735.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5058 seconds and 3.6 Mi memory
2023-07-05 13:28:47.010232: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e164/b6de/tmp7qxes7el/HG00741.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5367 seconds and 3.6 Mi memory
2023-07-05 13:28:47.014735: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr9_KI270717v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:47.030150: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr9_KI270717v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0143 seconds and 3.0 Mi memory
2023-07-05 13:28:47.030290: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr9_KI270717v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:47.040331: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr9_KI270717v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0096 seconds and 3.7 Mi memory
2023-07-05 13:28:47.068216: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eb44/d32c/tmpuznlg91v/HG02109.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.491 seconds and 3.7 Mi memory
2023-07-05 13:28:47.100129: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_GL000195v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:47.100038: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/23af/9631/tmpvn5a23v_/HG01243.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.4433 seconds and 3.7 Mi memory
2023-07-05 13:28:47.107641: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/83e5/0467/tmp3fwmn672/HG02559.2_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5601 seconds and 3.7 Mi memory
2023-07-05 13:28:47.122931: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_GL000195v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0223 seconds and 3.2 Mi memory
2023-07-05 13:28:47.123058: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_GL000195v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:47.128274: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_GL000195v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0048 seconds and 3.7 Mi memory
2023-07-05 13:28:47.179626: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_GL000226v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:47.191073: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_GL000226v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.011 seconds and 3.1 Mi memory
2023-07-05 13:28:47.191196: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_GL000226v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:47.200166: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_GL000226v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0085 seconds and 3.7 Mi memory
2023-07-05 13:28:47.264219: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3688/44f6/tmpw84w54vk/HG02622.1_chr7.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 1.5071 seconds and 3.7 Mi memory
2023-07-05 13:28:47.270961: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270755v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:47.278888: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270755v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0075 seconds and 3.0 Mi memory
2023-07-05 13:28:47.279012: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270755v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:47.282879: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270755v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0034 seconds and 3.8 Mi memory
2023-07-05 13:28:47.316696: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr22_KI270733v1_random.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:47.335773: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chr22_KI270733v1_random.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0186 seconds and 3.1 Mi memory
2023-07-05 13:28:47.335891: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr22_KI270733v1_random.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:47.344239: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chr22_KI270733v1_random.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0079 seconds and 3.8 Mi memory
2023-07-05 13:28:47.378447: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270750v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:47.392423: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270750v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0135 seconds and 3.0 Mi memory
2023-07-05 13:28:47.392548: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270750v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:47.397307: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270750v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0043 seconds and 3.7 Mi memory
2023-07-05 13:28:47.448013: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270512v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:47.452956: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270512v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0044 seconds and 3.1 Mi memory
2023-07-05 13:28:47.453072: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270512v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:47.456855: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270512v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0034 seconds and 3.8 Mi memory
2023-07-05 13:28:47.509095: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270311v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:47.513458: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_KI270311v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0039 seconds and 3.1 Mi memory
2023-07-05 13:28:47.513573: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270311v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:47.517419: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_KI270311v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0034 seconds and 3.7 Mi memory
2023-07-05 13:28:47.552922: Running the command: "bash -c set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_GL000220v1.fa_contigs.clean | sed -e 's/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e' | bgzip --threads 1"
2023-07-05 13:28:47.569512: Successfully ran: "bash -c 'set -eo pipefail && samtools faidx /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38.fa --region-file /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/chrUn_GL000220v1.fa_contigs.clean | sed -e '"'"'s/\([^:]*\):\([0-9]*\)-\([0-9]*\)/echo "\1_sub_$((\2-1))_\3"/e'"'"' | bgzip --threads 1'" in 0.0161 seconds and 3.1 Mi memory
2023-07-05 13:28:47.569629: Running the command: "bash -c set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_GL000220v1.fa --threads 1 | grep -v '>' | wc | awk '{print $3-$1}'"
2023-07-05 13:28:47.574456: Successfully ran: "bash -c 'set -eo pipefail && bgzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7afe/aa7d/tmpzi_35b1i/GRCh38_chrUn_GL000220v1.fa --threads 1 | grep -v '"'"'>'"'"' | wc | awk '"'"'{print $3-$1}'"'"''" in 0.0044 seconds and 3.8 Mi memory
Issued job 'gather_fas' kind-gather_fas/instance-_nv696zs v1 with job batch system ID: 339 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'bin_other_contigs' kind-bin_other_contigs/instance-f84j4gy0 v1 with job batch system ID: 340 and disk: 27.2 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_split_wrapper' kind-export_split_wrapper/instance-cbmsi62s v1 with job batch system ID: 341 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-cx7z20y0 v1 with job batch system ID: 342 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-ff2xubod v1 with job batch system ID: 343 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-o33m4e5x v1 with job batch system ID: 344 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-m7uzl_02 v1 with job batch system ID: 345 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-4555ocpk v1 with job batch system ID: 346 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-i1mn9_k1 v1 with job batch system ID: 347 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-1yeqky9p v1 with job batch system ID: 348 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-ha8xy9eq v1 with job batch system ID: 349 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-t79jlzc6 v1 with job batch system ID: 350 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-2yqk6utj v1 with job batch system ID: 351 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-bf_eemqk v1 with job batch system ID: 352 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-z8hfr1ci v1 with job batch system ID: 353 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-zm54b9k7 v1 with job batch system ID: 354 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-amcq7hvf v1 with job batch system ID: 355 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-3vwtg1by v1 with job batch system ID: 356 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-z1ny7r5s v1 with job batch system ID: 357 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-tzqbfhmo v1 with job batch system ID: 358 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-i7waikgn v1 with job batch system ID: 359 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-py0tjdrl v1 with job batch system ID: 360 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-8frc3z0a v1 with job batch system ID: 361 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-74u153bn v1 with job batch system ID: 362 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-rzngc7gh v1 with job batch system ID: 363 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-97qtjznb v1 with job batch system ID: 364 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-rfwrwkah v1 with job batch system ID: 365 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-a4ajqmaz v1 with job batch system ID: 366 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-54htxpyr v1 with job batch system ID: 367 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cactus_align' kind-cactus_align/instance-yxa7kwjb v1 with job batch system ID: 368 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-vr851e5x v1 with job batch system ID: 369 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-8wrnoqsk v1 with job batch system ID: 370 and disk: 1.6 Gi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-x4xu31pq v1 with job batch system ID: 371 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-qvgeeukm v1 with job batch system ID: 372 and disk: 1.3 Gi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-yf1pud_y v1 with job batch system ID: 373 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-6lb02lns v1 with job batch system ID: 374 and disk: 2.9 Gi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-o25g6gdl v1 with job batch system ID: 375 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-4cp2blz3 v1 with job batch system ID: 376 and disk: 1.5 Gi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-puim_t6f v1 with job batch system ID: 377 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-83beok6_ v1 with job batch system ID: 378 and disk: 3.5 Gi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-ekhyg0ls v1 with job batch system ID: 379 and disk: 168.9 Ki, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-x_mh_0l2 v1 with job batch system ID: 380 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-cmn48r4f v1 with job batch system ID: 381 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-f84gt0du v1 with job batch system ID: 382 and disk: 16.2 Mi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-tewchzee v1 with job batch system ID: 383 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-j2_hzvp8 v1 with job batch system ID: 384 and disk: 2.5 Gi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-31ql4w7t v1 with job batch system ID: 385 and disk: 2.7 Gi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-iwwpux7k v1 with job batch system ID: 386 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-o0eoq6qd v1 with job batch system ID: 387 and disk: 1.3 Gi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-yu4ililv v1 with job batch system ID: 388 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-2d71x_ag v1 with job batch system ID: 389 and disk: 1.2 Gi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-tkocf2_e v1 with job batch system ID: 390 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-yr95xerz v1 with job batch system ID: 391 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-hshv1i82 v1 with job batch system ID: 392 and disk: 826.6 Mi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-xs_9oxzf v1 with job batch system ID: 393 and disk: 3.4 Gi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-ihffonay v1 with job batch system ID: 394 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-u1d4rp05 v1 with job batch system ID: 395 and disk: 2.1 Gi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-i3rhg8bq v1 with job batch system ID: 396 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-engzu6sx v1 with job batch system ID: 397 and disk: 517.7 Ki, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-hxy_azwm v1 with job batch system ID: 398 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-zbpqw8cj v1 with job batch system ID: 399 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-wvuhxj0y v1 with job batch system ID: 400 and disk: 1.4 Gi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-7p7p2hzn v1 with job batch system ID: 401 and disk: 2.8 Gi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-bv82phev v1 with job batch system ID: 402 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-h2u0kq76 v1 with job batch system ID: 403 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-bu8qdtxy v1 with job batch system ID: 404 and disk: 1.6 Gi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-cyl_ka_5 v1 with job batch system ID: 405 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-qp_e97aa v1 with job batch system ID: 406 and disk: 2.7 Gi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-yzngflmv v1 with job batch system ID: 407 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-rfe74dpw v1 with job batch system ID: 408 and disk: 2.1 Gi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-vmj08s4v v1 with job batch system ID: 409 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-w3f9tbpi v1 with job batch system ID: 410 and disk: 1.3 Gi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-368q0ly2 v1 with job batch system ID: 411 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-b0taf77c v1 with job batch system ID: 412 and disk: 914.5 Mi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-pu_vvmgo v1 with job batch system ID: 413 and disk: 1.5 Gi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-vjaj17g0 v1 with job batch system ID: 414 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-iuoqtuzy v1 with job batch system ID: 415 and disk: 39.3 Mi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-d5ghsyvo v1 with job batch system ID: 416 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-qjwd9p8a v1 with job batch system ID: 417 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-262qkk3t v1 with job batch system ID: 418 and disk: 2.3 Gi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-x4v2r7uf v1 with job batch system ID: 419 and disk: 2.2 Gi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-8vvd1ssq v1 with job batch system ID: 420 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'filter_paf' kind-filter_paf/instance-gylrsz6t v1 with job batch system ID: 421 and disk: 1.9 Gi, memory: 4.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_headers' kind-sanitize_fasta_headers/instance-v0u2l66c v1 with job batch system ID: 422 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
2023-07-05 13:42:27.211147: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/38c9/3d99/tmpobm8d9h6/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
2023-07-05 13:42:27.214611: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/38c9/3d99/tmpobm8d9h6/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 0.0029 seconds and 1.8 Mi memory with job-memory 4.0 Gi. Percent utilization: 0.04368
2023-07-05 13:42:27.230426: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/a409/2a13/tmpd9t9t0ee/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
2023-07-05 13:42:27.284184: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/a409/2a13/tmpd9t9t0ee/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 0.053 seconds and 11.1 Mi memory with job-memory 4.0 Gi. Percent utilization: 0.2707
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
2023-07-05 13:42:27.374216: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/554b/c9b9/tmpn9u0bg8b/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
2023-07-05 13:42:27.379824: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/554b/c9b9/tmpn9u0bg8b/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 0.0047 seconds and 2.1 Mi memory with job-memory 4.0 Gi. Percent utilization: 0.05188
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
2023-07-05 13:42:30.082659: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/f4ab/7894/tmp1cbuuavr/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
2023-07-05 13:42:30.090043: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/0bd4/fa9e/tmpmj2fnfu1/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
2023-07-05 13:42:30.543148: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/e579/704d/tmp_1i3bf6h/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
2023-07-05 13:42:30.744251: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/3904/abba/tmp2nzonf2m/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
2023-07-05 13:42:31.251888: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/6ebe/341c/tmpqhdpstq8/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
2023-07-05 13:42:31.903335: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/f658/42de/tmpwrm3zhac/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
2023-07-05 13:42:32.070215: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/f658/42de/tmpwrm3zhac/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 0.1658 seconds and 32.6 Mi memory with job-memory 4.0 Gi. Percent utilization: 0.7948
2023-07-05 13:42:32.112111: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/f7b1/5889/tmpwwycsrok/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
2023-07-05 13:42:32.147758: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/7edb/79b0/tmppvuxcrc_/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-i_iuxlld v1 with job batch system ID: 423 and disk: 12.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-qy_xp3x5 v1 with job batch system ID: 424 and disk: 73.6 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-zv2bbf_3 v1 with job batch system ID: 425 and disk: 294.9 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-pe3qhjxn v1 with job batch system ID: 426 and disk: 295.0 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-0ei078vj v1 with job batch system ID: 427 and disk: 27.4 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
2023-07-05 13:42:32.250587: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/f40b/0ee9/tmp60bmzong/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
2023-07-05 13:42:32.586202: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/5d99/7a9e/tmpfdvn_zkt/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
2023-07-05 13:42:32.694989: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/27fd/0d2f/tmpcrkp09nz/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
2023-07-05 13:42:32.915680: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/96ab/6f18/tmpayvoy1yr/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
Running PAF filter with minBlock=250000 minMAPQ=5 minIdentity=0.5
2023-07-05 13:42:33.100540: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/0416/eeb2/tmpl8rxrpgb/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
2023-07-05 13:42:33.580771: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/66b0/b0f1/tmpzt8ao_tl/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
2023-07-05 13:42:33.596310: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b5f/8a6a/tmpii_t7zdw/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
2023-07-05 13:42:33.707856: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/d947/2e66/tmpt0retev2/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
2023-07-05 13:42:34.063244: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/5b08/2060/tmp2z6yu1t9/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
2023-07-05 13:42:34.131853: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/17cd/fd9a/tmpa5etjaus/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
2023-07-05 13:42:34.458499: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/6ebe/341c/tmpqhdpstq8/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 3.2054 seconds and 582.6 Mi memory with job-memory 4.0 Gi. Percent utilization: 14.22
2023-07-05 13:42:34.607237: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/3db6/59f3/tmpqn8ptu2o/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
2023-07-05 13:42:34.961065: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/56cd/179a/tmpbeot8hc9/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
2023-07-05 13:42:35.365054: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/ffe1/29d2/tmp9nef6xfu/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
2023-07-05 13:42:35.433498: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/e579/704d/tmp_1i3bf6h/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 4.8892 seconds and 881.9 Mi memory with job-memory 4.0 Gi. Percent utilization: 21.53
2023-07-05 13:42:35.653850: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd1d/8b70/tmpr1y307tt/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
2023-07-05 13:42:35.877964: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/ec4f/577e/tmpmjlil1s_/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
2023-07-05 13:42:36.033771: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/3904/abba/tmp2nzonf2m/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 5.2884 seconds and 998.0 Mi memory with job-memory 4.0 Gi. Percent utilization: 24.37
2023-07-05 13:42:36.102794: Running the command: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/8708/54c4/tmpugtfxavd/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5"
2023-07-05 13:42:36.168381: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/0bd4/fa9e/tmpmj2fnfu1/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 6.0772 seconds and 1.1 Gi memory with job-memory 4.0 Gi. Percent utilization: 26.34
2023-07-05 13:42:36.475892: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/f7b1/5889/tmpwwycsrok/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 4.3625 seconds and 765.8 Mi memory with job-memory 4.0 Gi. Percent utilization: 18.7
2023-07-05 13:42:36.636693: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/f4ab/7894/tmp1cbuuavr/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 6.5529 seconds and 1.2 Gi memory with job-memory 4.0 Gi. Percent utilization: 28.8
2023-07-05 13:42:36.743255: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/7edb/79b0/tmppvuxcrc_/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 4.5943 seconds and 805.4 Mi memory with job-memory 4.0 Gi. Percent utilization: 19.66
2023-07-05 13:42:37.538606: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/d947/2e66/tmpt0retev2/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 3.8294 seconds and 691.0 Mi memory with job-memory 4.0 Gi. Percent utilization: 16.87
2023-07-05 13:42:39.238850: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/96ab/6f18/tmpayvoy1yr/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 6.3218 seconds and 1.1 Gi memory with job-memory 4.0 Gi. Percent utilization: 27.88
2023-07-05 13:42:39.274304: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/0416/eeb2/tmpl8rxrpgb/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 6.1725 seconds and 1.1 Gi memory with job-memory 4.0 Gi. Percent utilization: 27.08
2023-07-05 13:42:40.355667: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/17cd/fd9a/tmpa5etjaus/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 6.2224 seconds and 1.1 Gi memory with job-memory 4.0 Gi. Percent utilization: 26.93
2023-07-05 13:42:41.343156: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/66b0/b0f1/tmpzt8ao_tl/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 7.7611 seconds and 1.3 Gi memory with job-memory 4.0 Gi. Percent utilization: 32.98
2023-07-05 13:42:41.751063: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/56cd/179a/tmpbeot8hc9/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 6.7886 seconds and 1.2 Gi memory with job-memory 4.0 Gi. Percent utilization: 28.92
2023-07-05 13:42:41.968135: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/27fd/0d2f/tmpcrkp09nz/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 9.272 seconds and 1.6 Gi memory with job-memory 4.0 Gi. Percent utilization: 39.76
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-o42phhuq v1 with job batch system ID: 428 and disk: 36.3 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-vsf7bp5m v1 with job batch system ID: 429 and disk: 36.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-3jhh9fmw v1 with job batch system ID: 430 and disk: 36.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-idz0e5xb v1 with job batch system ID: 431 and disk: 36.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-bmzjo73_ v1 with job batch system ID: 432 and disk: 36.3 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-w18p37wt v1 with job batch system ID: 433 and disk: 36.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-8oqkzbk9 v1 with job batch system ID: 434 and disk: 34.7 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-l3et5lm7 v1 with job batch system ID: 435 and disk: 36.3 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-x1vs6lm5 v1 with job batch system ID: 436 and disk: 36.3 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1q5_1h53 v1 with job batch system ID: 437 and disk: 36.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-n4hg6461 v1 with job batch system ID: 438 and disk: 36.3 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-jl6wekoj v1 with job batch system ID: 439 and disk: 36.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-w9mpzbtn v1 with job batch system ID: 440 and disk: 36.4 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-kxjopmav v1 with job batch system ID: 441 and disk: 36.3 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-w82evbby v1 with job batch system ID: 442 and disk: 34.7 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-qb55yxb1 v1 with job batch system ID: 443 and disk: 36.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-sdynwcu7 v1 with job batch system ID: 444 and disk: 36.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-tiv_zoms v1 with job batch system ID: 445 and disk: 36.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-evgva1hw v1 with job batch system ID: 446 and disk: 36.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-z7o5m5a4 v1 with job batch system ID: 447 and disk: 36.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-wewankft v1 with job batch system ID: 448 and disk: 36.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-liq2qjup v1 with job batch system ID: 449 and disk: 36.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-gw00yo5p v1 with job batch system ID: 450 and disk: 36.3 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ey7_ksob v1 with job batch system ID: 451 and disk: 36.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-u11fr4u7 v1 with job batch system ID: 452 and disk: 36.3 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-5hrxfk4e v1 with job batch system ID: 453 and disk: 36.3 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-q8xpc5ze v1 with job batch system ID: 454 and disk: 36.3 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-8ju4ukvl v1 with job batch system ID: 455 and disk: 36.3 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-c7rg0_hy v1 with job batch system ID: 456 and disk: 36.4 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-5f0c8ixy v1 with job batch system ID: 457 and disk: 36.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ikzxwn0c v1 with job batch system ID: 458 and disk: 34.7 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-yihm941y v1 with job batch system ID: 459 and disk: 36.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-dhgfkzpt v1 with job batch system ID: 460 and disk: 36.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-mc3fma_1 v1 with job batch system ID: 461 and disk: 36.3 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-fk45q8qp v1 with job batch system ID: 462 and disk: 36.3 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-hi2nmqs0 v1 with job batch system ID: 463 and disk: 34.7 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-qgg1_4jf v1 with job batch system ID: 464 and disk: 36.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-t5ysqwzu v1 with job batch system ID: 465 and disk: 36.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-x9r28r9a v1 with job batch system ID: 466 and disk: 36.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-uxatzp42 v1 with job batch system ID: 467 and disk: 36.4 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-fn76g_9s v1 with job batch system ID: 468 and disk: 36.3 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-f86zzpko v1 with job batch system ID: 469 and disk: 36.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-84hzzn5d v1 with job batch system ID: 470 and disk: 36.3 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-wj8wn5rz v1 with job batch system ID: 471 and disk: 36.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-70nsopuo v1 with job batch system ID: 472 and disk: 36.3 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-12mem4cv v1 with job batch system ID: 473 and disk: 43.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-h5zlq0op v1 with job batch system ID: 474 and disk: 39.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-7m_h8i19 v1 with job batch system ID: 475 and disk: 41.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 13:42:42.114105: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/f40b/0ee9/tmp60bmzong/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 9.8623 seconds and 1.7 Gi memory with job-memory 4.0 Gi. Percent utilization: 42.69
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-rqyvjyhz v1 with job batch system ID: 476 and disk: 42.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-7m6n7qvy v1 with job batch system ID: 477 and disk: 39.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-6qbhner2 v1 with job batch system ID: 478 and disk: 46.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-02r5kp__ v1 with job batch system ID: 479 and disk: 46.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-sk0z4kbw v1 with job batch system ID: 480 and disk: 43.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-o553sbeh v1 with job batch system ID: 481 and disk: 38.4 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-g_r5ek9c v1 with job batch system ID: 482 and disk: 2.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-l0ctot4y v1 with job batch system ID: 483 and disk: 45.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-hlamqavu v1 with job batch system ID: 484 and disk: 43.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-y08g0ism v1 with job batch system ID: 485 and disk: 43.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-amr2zs9q v1 with job batch system ID: 486 and disk: 45.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_02bvf92 v1 with job batch system ID: 487 and disk: 41.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-9w_kfovp v1 with job batch system ID: 488 and disk: 39.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-t3kfn1gx v1 with job batch system ID: 489 and disk: 43.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-i9jjdm2d v1 with job batch system ID: 490 and disk: 43.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-0bbkstb8 v1 with job batch system ID: 491 and disk: 45.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-gi4vss5x v1 with job batch system ID: 492 and disk: 39.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-w3fqk_j0 v1 with job batch system ID: 493 and disk: 43.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-0vzbmp8_ v1 with job batch system ID: 494 and disk: 42.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 13:42:42.579259: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/5b08/2060/tmp2z6yu1t9/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 8.5148 seconds and 1.5 Gi memory with job-memory 4.0 Gi. Percent utilization: 36.79
2023-07-05 13:42:43.281935: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/ffe1/29d2/tmp9nef6xfu/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 7.9156 seconds and 1.4 Gi memory with job-memory 4.0 Gi. Percent utilization: 34.15
2023-07-05 13:42:43.874448: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/5d99/7a9e/tmpfdvn_zkt/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 11.2871 seconds and 1.8 Gi memory with job-memory 4.0 Gi. Percent utilization: 45.23
2023-07-05 13:42:44.034305: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/3db6/59f3/tmpqn8ptu2o/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 9.4258 seconds and 1.6 Gi memory with job-memory 4.0 Gi. Percent utilization: 39.78
2023-07-05 13:42:44.257340: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd1d/8b70/tmpr1y307tt/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 8.6021 seconds and 1.5 Gi memory with job-memory 4.0 Gi. Percent utilization: 37.18
2023-07-05 13:42:46.899831: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b5f/8a6a/tmpii_t7zdw/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 13.3024 seconds and 2.2 Gi memory with job-memory 4.0 Gi. Percent utilization: 55.41
2023-07-05 13:42:47.350233: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/8708/54c4/tmpugtfxavd/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 11.246 seconds and 2.0 Gi memory with job-memory 4.0 Gi. Percent utilization: 49.2
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-2ct06tif v1 with job batch system ID: 495 and disk: 366.3 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4kkcs3hz v1 with job batch system ID: 496 and disk: 2.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-i34m6kem v1 with job batch system ID: 497 and disk: 531.0 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-mav8fhi0 v1 with job batch system ID: 498 and disk: 533.8 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-e12y3iw0 v1 with job batch system ID: 499 and disk: 1.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-2af2msam v1 with job batch system ID: 500 and disk: 2.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-c4o0h7n6 v1 with job batch system ID: 501 and disk: 18.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-l77p9mv1 v1 with job batch system ID: 502 and disk: 100.3 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-udykb0d3 v1 with job batch system ID: 503 and disk: 277.9 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-kdzf8o83 v1 with job batch system ID: 504 and disk: 247.4 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-nmgel8gz v1 with job batch system ID: 505 and disk: 60.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-cu3qa1cy v1 with job batch system ID: 506 and disk: 42.1 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-lcqntp_3 v1 with job batch system ID: 507 and disk: 160.9 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-slu6xa4u v1 with job batch system ID: 508 and disk: 28.3 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-el1yf_9q v1 with job batch system ID: 509 and disk: 35.0 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-n2cl9twe v1 with job batch system ID: 510 and disk: 27.6 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-6ytx9b1s v1 with job batch system ID: 511 and disk: 346.3 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-vt8rigxz v1 with job batch system ID: 512 and disk: 208.9 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-g6rhguqs v1 with job batch system ID: 513 and disk: 36.1 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-hq07d9gs v1 with job batch system ID: 514 and disk: 218.7 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-gvh3v__9 v1 with job batch system ID: 515 and disk: 437.7 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ylbosin5 v1 with job batch system ID: 516 and disk: 118.3 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-e5ec1t4n v1 with job batch system ID: 517 and disk: 31.5 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-09v2w0o2 v1 with job batch system ID: 518 and disk: 53.1 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-mn5v_jhc v1 with job batch system ID: 519 and disk: 2.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-tjwvie48 v1 with job batch system ID: 520 and disk: 201.9 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-yz9azxtw v1 with job batch system ID: 521 and disk: 456.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ooce271p v1 with job batch system ID: 522 and disk: 474.0 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-h87mhzpz v1 with job batch system ID: 523 and disk: 28.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-j40t0_iz v1 with job batch system ID: 524 and disk: 2.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-yhxdlxe7 v1 with job batch system ID: 525 and disk: 2.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-qukrzy0g v1 with job batch system ID: 526 and disk: 345.4 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-61m42_dn v1 with job batch system ID: 527 and disk: 294.6 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-n853pu46 v1 with job batch system ID: 528 and disk: 106.1 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-9uykv03a v1 with job batch system ID: 529 and disk: 304.9 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-kdnhx0r2 v1 with job batch system ID: 530 and disk: 2.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ucifinxb v1 with job batch system ID: 531 and disk: 177.7 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-0b7e0ron v1 with job batch system ID: 532 and disk: 40.1 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-45kfmlx8 v1 with job batch system ID: 533 and disk: 122.8 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-vba98km2 v1 with job batch system ID: 534 and disk: 226.1 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-z8_b_6jr v1 with job batch system ID: 535 and disk: 306.3 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-qfynyynx v1 with job batch system ID: 536 and disk: 634.5 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-drm9mm3a v1 with job batch system ID: 537 and disk: 140.9 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-xnd5hpvh v1 with job batch system ID: 538 and disk: 17.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ay_lnjdp v1 with job batch system ID: 539 and disk: 1.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-kq6q5yak v1 with job batch system ID: 540 and disk: 176.2 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-5658ht6w v1 with job batch system ID: 541 and disk: 481.4 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-5uvkhtck v1 with job batch system ID: 542 and disk: 1.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-m5t1u7uh v1 with job batch system ID: 543 and disk: 578.6 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-q1_ax4pn v1 with job batch system ID: 544 and disk: 206.3 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-8jkxk4ew v1 with job batch system ID: 545 and disk: 431.1 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-zmcsl_jo v1 with job batch system ID: 546 and disk: 2.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-2eqzkkf7 v1 with job batch system ID: 547 and disk: 143.1 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-owtma29t v1 with job batch system ID: 548 and disk: 2.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-d4fcubgf v1 with job batch system ID: 549 and disk: 269.8 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-p6kgp4vj v1 with job batch system ID: 550 and disk: 717.6 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-n3jm_ha_ v1 with job batch system ID: 551 and disk: 118.1 Ki, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 13:42:49.164311: Successfully ran: "gaffilter /data/tmp/9eeeec3d467250f1999ba98b3759d207/ec4f/577e/tmpmjlil1s_/mg.paf.filter -p -r 5.0 -m 0.0 -b 250000 -q 5 -i 0.5" in 13.2851 seconds and 2.2 Gi memory with job-memory 4.0 Gi. Percent utilization: 55.04
2023-07-05 13:42:57.382995: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e58e/0484/tmpw735pwzv/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p"
2023-07-05 13:42:57.383146: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/36d1/0e19/tmp30f9ybo6/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p"
2023-07-05 13:42:57.383234: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/0c37/c04f/tmpriknn5lt/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p"
2023-07-05 13:42:57.383318: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2fbf/6aba/tmpg79ccolu/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
2023-07-05 13:42:57.383359: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2874/b208/tmpk3ovm31u/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p"
2023-07-05 13:42:57.383399: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3923/aa99/tmpfnozz3fa/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-05 13:42:57.383781: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1c7d/396a/tmpkg_dpa4d/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p"
2023-07-05 13:42:57.389327: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5d1c/fa1f/tmpk87uiair/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:42:57.398617: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2874/b208/tmpk3ovm31u/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p'" in 0.0147 seconds and 3.0 Mi memory
2023-07-05 13:42:57.398717: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/0c37/c04f/tmpriknn5lt/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p'" in 0.0148 seconds and 3.1 Mi memory
2023-07-05 13:42:57.398770: Running the command: "cactus_analyseAssembly HG02723.2.sanitized.fa"
2023-07-05 13:42:57.398766: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1c7d/396a/tmpkg_dpa4d/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p'" in 0.0144 seconds and 2.9 Mi memory
2023-07-05 13:42:57.398798: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3923/aa99/tmpfnozz3fa/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p'" in 0.0147 seconds and 3.0 Mi memory
2023-07-05 13:42:57.398822: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e58e/0484/tmpw735pwzv/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p'" in 0.0152 seconds and 3.1 Mi memory
2023-07-05 13:42:57.398827: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/36d1/0e19/tmp30f9ybo6/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p'" in 0.0149 seconds and 3.0 Mi memory
2023-07-05 13:42:57.398892: Running the command: "cactus_analyseAssembly HG02572.2.sanitized.fa"
2023-07-05 13:42:57.398942: Running the command: "cactus_analyseAssembly HG01928.2.sanitized.fa"
2023-07-05 13:42:57.398989: Running the command: "cactus_analyseAssembly HG00733.2.sanitized.fa"
2023-07-05 13:42:57.398997: Running the command: "cactus_analyseAssembly HG02559.2.sanitized.fa"
2023-07-05 13:42:57.398999: Running the command: "cactus_analyseAssembly HG03516.1.sanitized.fa"
2023-07-05 13:42:57.399858: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2fbf/6aba/tmpg79ccolu/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p'" in 0.0159 seconds and 3.1 Mi memory
2023-07-05 13:42:57.400019: Running the command: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa"
2023-07-05 13:42:57.410990: Successfully ran: "cactus_analyseAssembly HG02559.2.sanitized.fa" in 0.0115 seconds and 1.1 Mi memory
2023-07-05 13:42:57.411109: Successfully ran: "cactus_analyseAssembly HG01928.2.sanitized.fa" in 0.0117 seconds and 1.0 Mi memory
2023-07-05 13:42:57.411137: Successfully ran: "cactus_analyseAssembly HG02572.2.sanitized.fa" in 0.0118 seconds and 1.0 Mi memory
2023-07-05 13:42:57.411140: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 0.0117 seconds and 1.1 Mi memory
2023-07-05 13:42:57.411163: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 0.012 seconds and 1.1 Mi memory
2023-07-05 13:42:57.411229: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 0.0118 seconds and 1.1 Mi memory
2023-07-05 13:42:57.411678: Successfully ran: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa" in 0.0112 seconds and 1.2 Mi memory
2023-07-05 13:42:57.451285: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5d1c/fa1f/tmpk87uiair/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p'" in 0.0611 seconds and 3.2 Mi memory
2023-07-05 13:42:57.452013: Running the command: "cactus_analyseAssembly HG02145.1.sanitized.fa"
2023-07-05 13:42:57.487738: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b34/c795/tmpsgslrr3t/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p"
2023-07-05 13:42:57.487878: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/375d/a605/tmpv7g7cu8o/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p"
2023-07-05 13:42:57.487906: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7eac/3a17/tmp708r_u3q/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p"
2023-07-05 13:42:57.487935: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9f9c/057a/tmphlo5x6mp/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:42:57.492585: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7eac/3a17/tmp708r_u3q/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p'" in 0.004 seconds and 3.0 Mi memory
2023-07-05 13:42:57.492746: Running the command: "cactus_analyseAssembly HG03579.2.sanitized.fa"
2023-07-05 13:42:57.493277: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/375d/a605/tmpv7g7cu8o/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p'" in 0.0047 seconds and 3.1 Mi memory
2023-07-05 13:42:57.493447: Running the command: "cactus_analyseAssembly HG02486.2.sanitized.fa"
2023-07-05 13:42:57.493832: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b34/c795/tmpsgslrr3t/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p'" in 0.0052 seconds and 3.0 Mi memory
2023-07-05 13:42:57.493995: Running the command: "cactus_analyseAssembly HG02055.2.sanitized.fa"
2023-07-05 13:42:57.494020: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9f9c/057a/tmphlo5x6mp/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 0.0052 seconds and 3.2 Mi memory
2023-07-05 13:42:57.494180: Running the command: "cactus_analyseAssembly GRCh38.sanitized.fa"
2023-07-05 13:42:57.495263: Successfully ran: "cactus_analyseAssembly HG03579.2.sanitized.fa" in 0.0021 seconds and 1.1 Mi memory
2023-07-05 13:42:57.495722: Successfully ran: "cactus_analyseAssembly HG02486.2.sanitized.fa" in 0.0018 seconds and 1.1 Mi memory
2023-07-05 13:42:57.496478: Successfully ran: "cactus_analyseAssembly HG02055.2.sanitized.fa" in 0.002 seconds and 1.1 Mi memory
2023-07-05 13:42:57.497754: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 0.0032 seconds and 1.2 Mi memory
2023-07-05 13:42:57.522393: Successfully ran: "cactus_analyseAssembly HG02145.1.sanitized.fa" in 0.0698 seconds and 1.2 Mi memory
2023-07-05 13:42:57.549020: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3b3f/3573/tmpmyqfhd56/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p"
2023-07-05 13:42:57.549122: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7dc5/252b/tmp9f36_pi8/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
2023-07-05 13:42:57.553655: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7dc5/252b/tmp9f36_pi8/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p'" in 0.0037 seconds and 3.0 Mi memory
2023-07-05 13:42:57.553750: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3b3f/3573/tmpmyqfhd56/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 0.0041 seconds and 3.1 Mi memory
2023-07-05 13:42:57.553808: Running the command: "cactus_analyseAssembly CHM13.sanitized.fa"
2023-07-05 13:42:57.553903: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-05 13:42:57.555948: Successfully ran: "cactus_analyseAssembly CHM13.sanitized.fa" in 0.0017 seconds and 1.1 Mi memory
2023-07-05 13:42:57.556385: Successfully ran: "cactus_analyseAssembly HG02723.1.sanitized.fa" in 0.0021 seconds and 1.1 Mi memory
2023-07-05 13:42:57.670415: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/805a/2a5d/tmpgz6tdar0/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-05 13:42:57.676114: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/805a/2a5d/tmpgz6tdar0/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p'" in 0.0049 seconds and 3.1 Mi memory
2023-07-05 13:42:57.676265: Running the command: "cactus_analyseAssembly HG01175.2.sanitized.fa"
2023-07-05 13:42:57.678040: Successfully ran: "cactus_analyseAssembly HG01175.2.sanitized.fa" in 0.0013 seconds and 1.1 Mi memory
2023-07-05 13:42:57.693940: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/839f/8ac0/tmpcwf7q2q_/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
2023-07-05 13:42:57.695175: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d35/1b32/tmpv0nevza3/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:42:57.695161: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a9e/5b6b/tmp8onq8uy3/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p"
2023-07-05 13:42:57.698483: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/839f/8ac0/tmpcwf7q2q_/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p'" in 0.0038 seconds and 3.1 Mi memory
2023-07-05 13:42:57.698635: Running the command: "cactus_analyseAssembly HG00438.2.sanitized.fa"
2023-07-05 13:42:57.699556: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7d35/1b32/tmpv0nevza3/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 0.0038 seconds and 3.1 Mi memory
2023-07-05 13:42:57.699723: Running the command: "cactus_analyseAssembly GRCh38.sanitized.fa"
2023-07-05 13:42:57.699972: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a9e/5b6b/tmp8onq8uy3/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p'" in 0.0042 seconds and 3.0 Mi memory
2023-07-05 13:42:57.700119: Running the command: "cactus_analyseAssembly HG02145.2.sanitized.fa"
2023-07-05 13:42:57.700634: Successfully ran: "cactus_analyseAssembly HG00438.2.sanitized.fa" in 0.0015 seconds and 1.1 Mi memory
2023-07-05 13:42:57.701885: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 0.0017 seconds and 1.1 Mi memory
2023-07-05 13:42:57.702035: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 0.0015 seconds and 1.1 Mi memory
2023-07-05 13:42:57.714790: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/0513/0917/tmp9_yeekua/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p"
2023-07-05 13:42:57.715042: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/57e5/da3a/tmp20awiev4/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p"
2023-07-05 13:42:57.720329: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/57e5/da3a/tmp20awiev4/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p'" in 0.0045 seconds and 3.1 Mi memory
2023-07-05 13:42:57.720481: Running the command: "cactus_analyseAssembly HG01952.2.sanitized.fa"
2023-07-05 13:42:57.720466: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/0513/0917/tmp9_yeekua/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p'" in 0.0049 seconds and 3.1 Mi memory
2023-07-05 13:42:57.720621: Running the command: "cactus_analyseAssembly HG02630.2.sanitized.fa"
2023-07-05 13:42:57.722413: Successfully ran: "cactus_analyseAssembly HG01952.2.sanitized.fa" in 0.0015 seconds and 1.1 Mi memory
2023-07-05 13:42:57.722594: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 0.0015 seconds and 1.1 Mi memory
2023-07-05 13:42:57.746351: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f0af/ff45/tmpksd1p7en/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p"
2023-07-05 13:42:57.752104: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f0af/ff45/tmpksd1p7en/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p'" in 0.0049 seconds and 2.9 Mi memory
2023-07-05 13:42:57.752276: Running the command: "cactus_analyseAssembly HG02148.2.sanitized.fa"
2023-07-05 13:42:57.754137: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 0.0014 seconds and 1.1 Mi memory
2023-07-05 13:42:57.799298: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9149/ecf4/tmpdv5sow1f/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p"
2023-07-05 13:42:57.804514: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9149/ecf4/tmpdv5sow1f/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p'" in 0.0044 seconds and 3.0 Mi memory
2023-07-05 13:42:57.804852: Running the command: "cactus_analyseAssembly HG02717.2.sanitized.fa"
2023-07-05 13:42:57.806670: Successfully ran: "cactus_analyseAssembly HG02717.2.sanitized.fa" in 0.0014 seconds and 1.1 Mi memory
2023-07-05 13:42:57.863416: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2312/fc5c/tmpxkbqogup/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-05 13:42:57.869137: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2312/fc5c/tmpxkbqogup/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p'" in 0.0049 seconds and 3.0 Mi memory
2023-07-05 13:42:57.869294: Running the command: "cactus_analyseAssembly HG03516.2.sanitized.fa"
2023-07-05 13:42:57.871072: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 0.0014 seconds and 1.1 Mi memory
2023-07-05 13:42:57.892447: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2a52/c636/tmpdo3tjwn8/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p"
2023-07-05 13:42:57.892635: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/af1f/3a76/tmp8moewvni/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p"
2023-07-05 13:42:57.897196: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/af1f/3a76/tmp8moewvni/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p'" in 0.0039 seconds and 3.1 Mi memory
2023-07-05 13:42:57.897356: Running the command: "cactus_analyseAssembly HG02622.2.sanitized.fa"
2023-07-05 13:42:57.897736: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2a52/c636/tmpdo3tjwn8/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p'" in 0.0044 seconds and 3.0 Mi memory
2023-07-05 13:42:57.897899: Running the command: "cactus_analyseAssembly HG02818.2.sanitized.fa"
2023-07-05 13:42:57.899361: Successfully ran: "cactus_analyseAssembly HG02622.2.sanitized.fa" in 0.0016 seconds and 1.1 Mi memory
2023-07-05 13:42:57.899922: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 0.0016 seconds and 1.1 Mi memory
2023-07-05 13:42:57.902170: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/802e/f0e0/tmp6u8vewnb/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p"
2023-07-05 13:42:57.907743: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/802e/f0e0/tmp6u8vewnb/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p'" in 0.0047 seconds and 3.0 Mi memory
2023-07-05 13:42:57.907901: Running the command: "cactus_analyseAssembly HG00673.2.sanitized.fa"
2023-07-05 13:42:57.909696: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 0.0014 seconds and 1.1 Mi memory
2023-07-05 13:42:57.999270: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/cd71/6d25/tmpz0g8gzw_/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p"
2023-07-05 13:42:57.999356: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/72f3/4763/tmpxxl2si_t/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p"
2023-07-05 13:42:57.999360: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5990/38dd/tmps2dsw5ms/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p"
2023-07-05 13:42:57.999472: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d91/42ee/tmpslj1e6s0/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-05 13:42:58.005085: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5990/38dd/tmps2dsw5ms/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p'" in 0.005 seconds and 3.1 Mi memory
2023-07-05 13:42:58.005247: Running the command: "cactus_analyseAssembly HG01361.2.sanitized.fa"
2023-07-05 13:42:58.005481: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/72f3/4763/tmpxxl2si_t/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 0.0052 seconds and 3.0 Mi memory
2023-07-05 13:42:58.005527: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/cd71/6d25/tmpz0g8gzw_/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p'" in 0.0053 seconds and 3.1 Mi memory
2023-07-05 13:42:58.005648: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
2023-07-05 13:42:58.005645: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1d91/42ee/tmpslj1e6s0/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p'" in 0.0052 seconds and 3.1 Mi memory
2023-07-05 13:42:58.005689: Running the command: "cactus_analyseAssembly NA18906.2.sanitized.fa"
2023-07-05 13:42:58.005820: Running the command: "cactus_analyseAssembly HG00735.2.sanitized.fa"
2023-07-05 13:42:58.007458: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 0.0017 seconds and 1.1 Mi memory
2023-07-05 13:42:58.007930: Successfully ran: "cactus_analyseAssembly HG02080.2.sanitized.fa" in 0.0018 seconds and 1.1 Mi memory
2023-07-05 13:42:58.007977: Successfully ran: "cactus_analyseAssembly NA18906.2.sanitized.fa" in 0.0018 seconds and 1.1 Mi memory
2023-07-05 13:42:58.008061: Successfully ran: "cactus_analyseAssembly HG00735.2.sanitized.fa" in 0.0018 seconds and 1.1 Mi memory
2023-07-05 13:42:58.155540: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c282/11bd/tmpfe5abic4/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p"
2023-07-05 13:42:58.155977: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/81c2/ef01/tmp8ptae02e/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p"
2023-07-05 13:42:58.156008: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e181/af82/tmpkp48i_ew/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p"
2023-07-05 13:42:58.161579: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c282/11bd/tmpfe5abic4/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p'" in 0.0051 seconds and 3.1 Mi memory
2023-07-05 13:42:58.161672: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/81c2/ef01/tmp8ptae02e/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p'" in 0.0049 seconds and 3.0 Mi memory
2023-07-05 13:42:58.161746: Running the command: "cactus_analyseAssembly HG02257.2.sanitized.fa"
2023-07-05 13:42:58.161837: Running the command: "cactus_analyseAssembly HG01109.2.sanitized.fa"
2023-07-05 13:42:58.162166: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e181/af82/tmpkp48i_ew/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p'" in 0.0052 seconds and 3.0 Mi memory
2023-07-05 13:42:58.162328: Running the command: "cactus_analyseAssembly HG00741.2.sanitized.fa"
2023-07-05 13:42:58.164004: Successfully ran: "cactus_analyseAssembly HG02257.2.sanitized.fa" in 0.0018 seconds and 1.1 Mi memory
2023-07-05 13:42:58.164112: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 0.0018 seconds and 1.1 Mi memory
2023-07-05 13:42:58.164435: Successfully ran: "cactus_analyseAssembly HG00741.2.sanitized.fa" in 0.0016 seconds and 1.1 Mi memory
2023-07-05 13:42:58.214140: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a17f/8062/tmpg4ex00b4/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p"
2023-07-05 13:42:58.214201: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/951f/2436/tmpnr64l_nh/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p"
2023-07-05 13:42:58.216355: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/485a/13f0/tmpcgks8u96/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
2023-07-05 13:42:58.232817: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/951f/2436/tmpnr64l_nh/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p'" in 0.0052 seconds and 3.0 Mi memory
2023-07-05 13:42:58.232816: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/485a/13f0/tmpcgks8u96/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p'" in 0.0052 seconds and 3.1 Mi memory
2023-07-05 13:42:58.232899: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a17f/8062/tmpg4ex00b4/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p'" in 0.0052 seconds and 3.1 Mi memory
2023-07-05 13:42:58.232992: Running the command: "cactus_analyseAssembly HG01123.2.sanitized.fa"
2023-07-05 13:42:58.232992: Running the command: "cactus_analyseAssembly HG02886.2.sanitized.fa"
2023-07-05 13:42:58.233065: Running the command: "cactus_analyseAssembly HG03453.2.sanitized.fa"
2023-07-05 13:42:58.233800: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1862/4362/tmpipd_36ar/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p"
2023-07-05 13:42:58.235343: Successfully ran: "cactus_analyseAssembly HG02886.2.sanitized.fa" in 0.0017 seconds and 1.0 Mi memory
2023-07-05 13:42:58.235343: Successfully ran: "cactus_analyseAssembly HG01123.2.sanitized.fa" in 0.0017 seconds and 1.0 Mi memory
2023-07-05 13:42:58.235414: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 0.0018 seconds and 1.1 Mi memory
2023-07-05 13:42:58.239684: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1862/4362/tmpipd_36ar/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p'" in 0.005 seconds and 2.9 Mi memory
2023-07-05 13:42:58.239843: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
2023-07-05 13:42:58.241649: Successfully ran: "cactus_analyseAssembly HG03098.2.sanitized.fa" in 0.0014 seconds and 1.1 Mi memory
2023-07-05 13:42:58.493122: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/bfac/9719/tmp11739f4n/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-05 13:42:58.494770: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3c6a/05c7/tmp67m57nlu/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p"
2023-07-05 13:42:58.494819: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5e6f/5da9/tmpyq4igt92/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p"
2023-07-05 13:42:58.494994: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/292d/417a/tmpfpv904ik/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
2023-07-05 13:42:58.495032: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0007/debe/tmpde_vdcr2/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p"
2023-07-05 13:42:58.495216: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3041/f1fc/tmp9lg1z0jd/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p"
2023-07-05 13:42:58.495262: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/aa02/cde7/tmpsy6of1ab/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p"
2023-07-05 13:42:58.495316: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/d3ae/69df/tmpl2oqmugz/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p"
2023-07-05 13:42:58.496330: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a215/17e7/tmp66jwxe9u/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p"
2023-07-05 13:42:58.496324: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6dfb/e8c3/tmpk29zbskb/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p"
2023-07-05 13:42:58.496490: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5d87/00e3/tmpdvyn4hyq/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
2023-07-05 13:42:58.496461: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ec7c/3a2d/tmp1cwpl2lp/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p"
2023-07-05 13:42:58.496862: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1346/2b09/tmpdaq4d8ks/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p"
2023-07-05 13:42:58.497205: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ecc5/ef65/tmprctrwfs0/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
2023-07-05 13:42:58.497294: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1eae/2838/tmpnl1oghzj/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
2023-07-05 13:42:58.497508: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a937/d4f0/tmpug7nqdwx/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p"
2023-07-05 13:42:58.498027: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/d67f/eec6/tmp91hssyoq/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p"
2023-07-05 13:42:58.498493: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/d962/c3db/tmpmhjv4j8o/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p"
2023-07-05 13:42:58.499833: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0d4a/cdff/tmp7z47qybv/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-05 13:42:58.500020: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/d70f/ab6d/tmppz9ntbxx/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p"
2023-07-05 13:42:58.501838: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9e65/943f/tmp9bjmt4je/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p"
2023-07-05 13:42:58.502380: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e85e/02fd/tmpgddhss_4/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-05 13:42:58.526081: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ecc5/ef65/tmprctrwfs0/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p'" in 0.028 seconds and 3.0 Mi memory
2023-07-05 13:42:58.526277: Running the command: "cactus_analyseAssembly HG00621.2.sanitized.fa"
2023-07-05 13:42:58.526500: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5d87/00e3/tmpdvyn4hyq/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p'" in 0.0293 seconds and 3.0 Mi memory
2023-07-05 13:42:58.526529: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/d67f/eec6/tmp91hssyoq/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p'" in 0.0274 seconds and 3.1 Mi memory
2023-07-05 13:42:58.526540: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3041/f1fc/tmp9lg1z0jd/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p'" in 0.0306 seconds and 3.1 Mi memory
2023-07-05 13:42:58.526539: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/d962/c3db/tmpmhjv4j8o/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p'" in 0.0271 seconds and 2.9 Mi memory
2023-07-05 13:42:58.526583: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a215/17e7/tmp66jwxe9u/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p'" in 0.0295 seconds and 3.0 Mi memory
2023-07-05 13:42:58.526707: Running the command: "cactus_analyseAssembly HG00438.2.sanitized.fa"
2023-07-05 13:42:58.526716: Running the command: "cactus_analyseAssembly HG02818.2.sanitized.fa"
2023-07-05 13:42:58.526728: Running the command: "cactus_analyseAssembly HG02148.2.sanitized.fa"
2023-07-05 13:42:58.526731: Running the command: "cactus_analyseAssembly HG01258.2.sanitized.fa"
2023-07-05 13:42:58.526714: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6dfb/e8c3/tmpk29zbskb/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p'" in 0.0295 seconds and 3.1 Mi memory
2023-07-05 13:42:58.526715: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9e65/943f/tmp9bjmt4je/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p'" in 0.0241 seconds and 3.1 Mi memory
2023-07-05 13:42:58.526776: Running the command: "cactus_analyseAssembly HG02886.1.sanitized.fa"
2023-07-05 13:42:58.536531: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/204b/7b47/tmpim8mdl2j/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p"
2023-07-05 13:42:58.536708: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a937/d4f0/tmpug7nqdwx/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 0.0384 seconds and 3.0 Mi memory
2023-07-05 13:42:58.536978: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
2023-07-05 13:42:58.536984: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4eb0/a15e/tmppb9s3l8u/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p'" in 0.0386 seconds and 2.9 Mi memory
2023-07-05 13:42:58.537301: Running the command: "cactus_analyseAssembly HG02148.1.sanitized.fa"
2023-07-05 13:42:58.538075: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e85e/02fd/tmpgddhss_4/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p'" in 0.0346 seconds and 3.1 Mi memory
2023-07-05 13:42:58.538396: Running the command: "cactus_analyseAssembly HG01106.2.sanitized.fa"
2023-07-05 13:42:58.542036: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/50f4/b820/tmpw69tmaxn/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-05 13:42:58.542685: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ddbb/d0e4/tmpx47vdazz/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p"
2023-07-05 13:42:58.543362: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0d4a/cdff/tmp7z47qybv/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p'" in 0.0429 seconds and 3.1 Mi memory
2023-07-05 13:42:58.543629: Running the command: "cactus_analyseAssembly HG00733.2.sanitized.fa"
2023-07-05 13:42:58.544183: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5122/0930/tmp4obrivzo/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
2023-07-05 13:42:58.546085: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/d161/9add/tmpt3b305g3/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:42:58.546180: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/79ea/c0f2/tmpp_wt93r0/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p"
2023-07-05 13:42:58.547037: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a784/8771/tmpwh3be12c/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p"
2023-07-05 13:42:58.548037: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/237d/807b/tmp8no7assr/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p"
2023-07-05 13:42:58.549243: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ad7a/b8da/tmpjbl_8j42/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:42:58.549547: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/77b3/55cf/tmpnz7xmgrh/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p"
2023-07-05 13:42:58.550029: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 0.0225 seconds and 1.1 Mi memory
2023-07-05 13:42:58.550245: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 0.0223 seconds and 1.0 Mi memory
2023-07-05 13:42:58.550548: Successfully ran: "cactus_analyseAssembly HG02630.1.sanitized.fa" in 0.0231 seconds and 1.1 Mi memory
2023-07-05 13:42:58.550588: Successfully ran: "cactus_analyseAssembly HG01891.2.sanitized.fa" in 0.0231 seconds and 1.0 Mi memory
2023-07-05 13:42:58.550605: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 0.0232 seconds and 1.1 Mi memory
2023-07-05 13:42:58.550616: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 0.0232 seconds and 1.0 Mi memory
2023-07-05 13:42:58.550668: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 0.0229 seconds and 1.0 Mi memory
2023-07-05 13:42:58.550686: Successfully ran: "cactus_analyseAssembly HG01928.1.sanitized.fa" in 0.023 seconds and 1.1 Mi memory
2023-07-05 13:42:58.550693: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 0.0232 seconds and 1.1 Mi memory
2023-07-05 13:42:58.550701: Successfully ran: "cactus_analyseAssembly HG00733.1.sanitized.fa" in 0.0227 seconds and 1.1 Mi memory
2023-07-05 13:42:58.550726: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 0.0238 seconds and 1.0 Mi memory
2023-07-05 13:42:58.550737: Successfully ran: "cactus_analyseAssembly HG03486.1.sanitized.fa" in 0.0229 seconds and 1.2 Mi memory
2023-07-05 13:42:58.550773: Successfully ran: "cactus_analyseAssembly HG03492.2.sanitized.fa" in 0.0228 seconds and 1.1 Mi memory
2023-07-05 13:42:58.550944: Successfully ran: "cactus_analyseAssembly HG02257.1.sanitized.fa" in 0.023 seconds and 1.1 Mi memory
2023-07-05 13:42:58.551058: Successfully ran: "cactus_analyseAssembly HG01952.2.sanitized.fa" in 0.0235 seconds and 1.2 Mi memory
2023-07-05 13:42:58.554576: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/79ea/c0f2/tmpp_wt93r0/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p'" in 0.0075 seconds and 3.1 Mi memory
2023-07-05 13:42:58.554769: Running the command: "cactus_analyseAssembly HG00438.1.sanitized.fa"
2023-07-05 13:42:58.557384: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a784/8771/tmpwh3be12c/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p'" in 0.009 seconds and 2.9 Mi memory
2023-07-05 13:42:58.557748: Running the command: "cactus_analyseAssembly HG02572.2.sanitized.fa"
2023-07-05 13:42:58.558603: Successfully ran: "cactus_analyseAssembly HG00438.1.sanitized.fa" in 0.0034 seconds and 1.2 Mi memory
2023-07-05 13:42:58.559706: Successfully ran: "cactus_analyseAssembly HG02080.2.sanitized.fa" in 0.0222 seconds and 2.9 Mi memory
2023-07-05 13:42:58.559697: Successfully ran: "cactus_analyseAssembly HG02148.1.sanitized.fa" in 0.0218 seconds and 2.9 Mi memory
2023-07-05 13:42:58.560924: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 0.0219 seconds and 2.9 Mi memory
2023-07-05 13:42:58.561839: Successfully ran: "cactus_analyseAssembly HG02572.2.sanitized.fa" in 0.0034 seconds and 1.2 Mi memory
2023-07-05 13:42:58.563560: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 0.0194 seconds and 2.9 Mi memory
2023-07-05 13:42:58.569542: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a910/d1fa/tmp2vrw5cz3/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p"
2023-07-05 13:42:58.666910: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/14b4/667c/tmp4zyvb6h_/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-05 13:42:58.667032: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e119/1440/tmpm5njtlvv/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p"
2023-07-05 13:42:58.667098: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/107a/332a/tmpwl_lhb0f/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-05 13:42:58.667099: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a0f2/239f/tmphnyfxpoc/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p"
2023-07-05 13:42:58.667153: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/b62a/b6b0/tmp3jwn_znm/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p"
2023-07-05 13:42:58.667326: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/fee6/701d/tmp3b16fzyw/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p"
2023-07-05 13:42:58.667331: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/55d3/fc0c/tmpskfqb4ec/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:42:58.667348: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/77e2/6fbe/tmp_gozlysp/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-05 13:42:58.667532: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/76df/dbdd/tmpuemvbioe/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p"
2023-07-05 13:42:58.667654: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e6c5/6b49/tmpepg10gnn/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p"
2023-07-05 13:42:58.667740: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0623/b786/tmpz3c5qm3l/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p"
2023-07-05 13:42:58.667880: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a281/61bd/tmprb_zxvke/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:42:58.667997: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/f50c/16d6/tmprd7vvpf5/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-05 13:42:58.668076: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/871b/e43b/tmpx_1tfg4y/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p"
2023-07-05 13:42:58.669164: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/4067/5cdd/tmp6gi9grn0/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p"
2023-07-05 13:42:58.669672: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0898/961e/tmpsd3xjwhu/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p"
2023-07-05 13:42:58.669774: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/7482/e35f/tmphil7e8qe/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p"
2023-07-05 13:42:58.670882: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/bc08/a3b9/tmprds9i229/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p"
2023-07-05 13:42:58.673398: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a687/a62b/tmppcjoiet1/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:42:58.679537: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/55d3/fc0c/tmpskfqb4ec/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p'" in 0.0114 seconds and 3.1 Mi memory
2023-07-05 13:42:58.679649: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/fee6/701d/tmp3b16fzyw/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p'" in 0.0115 seconds and 3.1 Mi memory
2023-07-05 13:42:58.679713: Running the command: "cactus_analyseAssembly HG02145.1.sanitized.fa"
2023-07-05 13:42:58.679809: Running the command: "cactus_analyseAssembly HG03579.1.sanitized.fa"
2023-07-05 13:42:58.679920: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0623/b786/tmpz3c5qm3l/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p'" in 0.0115 seconds and 3.1 Mi memory
2023-07-05 13:42:58.679920: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/14b4/667c/tmp4zyvb6h_/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p'" in 0.0123 seconds and 3.0 Mi memory
2023-07-05 13:42:58.680092: Running the command: "cactus_analyseAssembly HG01106.2.sanitized.fa"
2023-07-05 13:42:58.680100: Running the command: "cactus_analyseAssembly HG02486.1.sanitized.fa"
2023-07-05 13:42:58.680299: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/dc35/d9af/tmpqckzxqht/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p'" in 0.0111 seconds and 3.1 Mi memory
2023-07-05 13:42:58.680436: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/7482/e35f/tmphil7e8qe/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p'" in 0.0098 seconds and 3.1 Mi memory
2023-07-05 13:42:58.680485: Running the command: "cactus_analyseAssembly HG01109.2.sanitized.fa"
2023-07-05 13:42:58.680617: Running the command: "cactus_analyseAssembly HG02080.1.sanitized.fa"
2023-07-05 13:42:58.680619: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/76df/dbdd/tmpuemvbioe/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p'" in 0.0122 seconds and 3.1 Mi memory
2023-07-05 13:42:58.680710: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a0f2/239f/tmphnyfxpoc/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p'" in 0.0128 seconds and 3.1 Mi memory
2023-07-05 13:42:58.680811: Running the command: "cactus_analyseAssembly HG01071.2.sanitized.fa"
2023-07-05 13:42:58.682352: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e119/1440/tmpm5njtlvv/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p'" in 0.0145 seconds and 3.1 Mi memory
2023-07-05 13:42:58.682528: Running the command: "cactus_analyseAssembly HG03453.2.sanitized.fa"
2023-07-05 13:42:58.682684: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/4067/5cdd/tmp6gi9grn0/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p'" in 0.0125 seconds and 3.2 Mi memory
2023-07-05 13:42:58.682907: Running the command: "cactus_analyseAssembly HG01123.1.sanitized.fa"
2023-07-05 13:42:58.684869: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a51a/6042/tmp3x09m0l4/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p'" in 0.0158 seconds and 3.0 Mi memory
2023-07-05 13:42:58.685056: Running the command: "cactus_analyseAssembly HG02559.2.sanitized.fa"
2023-07-05 13:42:58.686473: Successfully ran: "cactus_analyseAssembly HG02145.1.sanitized.fa" in 0.0063 seconds and 1.1 Mi memory
2023-07-05 13:42:58.686561: Successfully ran: "cactus_analyseAssembly HG03579.1.sanitized.fa" in 0.0064 seconds and 1.0 Mi memory
2023-07-05 13:42:58.686692: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 0.0062 seconds and 1.1 Mi memory
2023-07-05 13:42:58.686734: Successfully ran: "cactus_analyseAssembly HG02486.1.sanitized.fa" in 0.0062 seconds and 1.1 Mi memory
2023-07-05 13:42:58.687030: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 0.0061 seconds and 1.1 Mi memory
2023-07-05 13:42:58.687184: Successfully ran: "cactus_analyseAssembly HG02080.1.sanitized.fa" in 0.0062 seconds and 1.2 Mi memory
2023-07-05 13:42:58.687268: Successfully ran: "cactus_analyseAssembly HG01071.2.sanitized.fa" in 0.006 seconds and 1.2 Mi memory
2023-07-05 13:42:58.687362: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 0.0061 seconds and 1.2 Mi memory
2023-07-05 13:42:58.687412: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 0.0058 seconds and 1.1 Mi memory
2023-07-05 13:42:58.687555: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 0.006 seconds and 1.1 Mi memory
2023-07-05 13:42:58.688663: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 0.0068 seconds and 1.2 Mi memory
2023-07-05 13:42:58.688694: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 0.0057 seconds and 1.2 Mi memory
2023-07-05 13:42:58.688914: Successfully ran: "cactus_analyseAssembly HG01123.1.sanitized.fa" in 0.0056 seconds and 1.2 Mi memory
2023-07-05 13:42:58.689173: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 0.0056 seconds and 1.7 Mi memory
2023-07-05 13:42:58.691424: Successfully ran: "cactus_analyseAssembly HG02559.2.sanitized.fa" in 0.006 seconds and 1.7 Mi memory
2023-07-05 13:42:58.693491: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/bc08/a3b9/tmprds9i229/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p'" in 0.0219 seconds and 3.1 Mi memory
2023-07-05 13:42:58.693742: Running the command: "cactus_analyseAssembly HG01258.2.sanitized.fa"
2023-07-05 13:42:58.693832: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/871b/e43b/tmpx_1tfg4y/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p'" in 0.0249 seconds and 3.1 Mi memory
2023-07-05 13:42:58.694075: Running the command: "cactus_analyseAssembly NA21309.2.sanitized.fa"
2023-07-05 13:42:58.695354: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0898/961e/tmpsd3xjwhu/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p'" in 0.025 seconds and 3.1 Mi memory
2023-07-05 13:42:58.695628: Running the command: "cactus_analyseAssembly NA21309.1.sanitized.fa"
2023-07-05 13:42:58.699716: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 0.0098 seconds and 2.9 Mi memory
2023-07-05 13:42:58.707273: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 0.0131 seconds and 2.9 Mi memory
2023-07-05 13:42:58.707810: Successfully ran: "cactus_analyseAssembly NA21309.2.sanitized.fa" in 0.0133 seconds and 2.9 Mi memory
2023-07-05 13:42:58.710331: Successfully ran: "cactus_analyseAssembly NA21309.1.sanitized.fa" in 0.0143 seconds and 2.9 Mi memory
2023-07-05 13:42:58.738850: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ddbb/d0e4/tmpx47vdazz/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p'" in 0.1951 seconds and 6.7 Mi memory
2023-07-05 13:42:58.740112: Running the command: "cactus_analyseAssembly HG02486.1.sanitized.fa"
2023-07-05 13:42:58.740562: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/204b/7b47/tmpim8mdl2j/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p'" in 0.203 seconds and 18.1 Mi memory
2023-07-05 13:42:58.742102: Running the command: "cactus_analyseAssembly HG01358.1.sanitized.fa"
2023-07-05 13:42:58.745481: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/50f4/b820/tmpw69tmaxn/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p'" in 0.2024 seconds and 18.1 Mi memory
2023-07-05 13:42:58.746854: Running the command: "cactus_analyseAssembly HG00621.1.sanitized.fa"
2023-07-05 13:42:58.757732: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/237d/807b/tmp8no7assr/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p'" in 0.2084 seconds and 8.9 Mi memory
2023-07-05 13:42:58.758250: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ad7a/b8da/tmpjbl_8j42/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p'" in 0.2079 seconds and 3.9 Mi memory
2023-07-05 13:42:58.759931: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a687/a62b/tmppcjoiet1/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 0.0858 seconds and 3.1 Mi memory
2023-07-05 13:42:58.760571: Running the command: "cactus_analyseAssembly GRCh38.sanitized.fa"
2023-07-05 13:42:58.759320: Running the command: "cactus_analyseAssembly HG01106.1.sanitized.fa"
2023-07-05 13:42:58.759785: Running the command: "cactus_analyseAssembly HG02145.1.sanitized.fa"
2023-07-05 13:42:58.794827: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/77b3/55cf/tmpnz7xmgrh/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p'" in 0.2445 seconds and 17.8 Mi memory
2023-07-05 13:42:58.796226: Running the command: "cactus_analyseAssembly HG03579.1.sanitized.fa"
2023-07-05 13:42:58.810894: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a910/d1fa/tmp2vrw5cz3/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p'" in 0.2403 seconds and 9.4 Mi memory
2023-07-05 13:42:58.812812: Running the command: "cactus_analyseAssembly HG00673.1.sanitized.fa"
2023-07-05 13:42:58.828176: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 0.0671 seconds and 2.9 Mi memory
2023-07-05 13:42:58.883325: Successfully ran: "cactus_analyseAssembly HG02486.1.sanitized.fa" in 0.1423 seconds and 6.7 Mi memory
2023-07-05 13:42:58.894633: Successfully ran: "cactus_analyseAssembly HG01358.1.sanitized.fa" in 0.1518 seconds and 17.8 Mi memory
2023-07-05 13:42:58.899812: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 0.1521 seconds and 17.8 Mi memory
2023-07-05 13:42:58.913931: Successfully ran: "cactus_analyseAssembly HG02145.1.sanitized.fa" in 0.1535 seconds and 3.8 Mi memory
2023-07-05 13:42:58.915048: Successfully ran: "cactus_analyseAssembly HG01106.1.sanitized.fa" in 0.1551 seconds and 8.8 Mi memory
2023-07-05 13:42:58.977894: Successfully ran: "cactus_analyseAssembly HG03579.1.sanitized.fa" in 0.1809 seconds and 17.8 Mi memory
2023-07-05 13:42:58.994825: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 0.1811 seconds and 9.3 Mi memory
2023-07-05 13:42:59.035306: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/d161/9add/tmpt3b305g3/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 0.4882 seconds and 55.5 Mi memory
2023-07-05 13:42:59.036534: Running the command: "cactus_analyseAssembly GRCh38.sanitized.fa"
2023-07-05 13:42:59.040094: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5f07/bc02/tmp8bdzrzdc/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p"
2023-07-05 13:42:59.040351: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/d6a7/af08/tmpzf49lye2/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p"
2023-07-05 13:42:59.049929: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a93b/5c64/tmp6l3z0auk/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
2023-07-05 13:42:59.050323: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5f07/bc02/tmp8bdzrzdc/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p'" in 0.0092 seconds and 3.1 Mi memory
2023-07-05 13:42:59.050388: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/d6a7/af08/tmpzf49lye2/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p'" in 0.0091 seconds and 3.1 Mi memory
2023-07-05 13:42:59.050484: Running the command: "cactus_analyseAssembly HG01358.2.sanitized.fa"
2023-07-05 13:42:59.050543: Running the command: "cactus_analyseAssembly HG01243.2.sanitized.fa"
2023-07-05 13:42:59.050656: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3766/fb32/tmpk9izjd5d/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p"
2023-07-05 13:42:59.061431: Successfully ran: "cactus_analyseAssembly HG01358.2.sanitized.fa" in 0.0105 seconds and 1.1 Mi memory
2023-07-05 13:42:59.061443: Successfully ran: "cactus_analyseAssembly HG01243.2.sanitized.fa" in 0.0104 seconds and 1.1 Mi memory
2023-07-05 13:42:59.062023: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3766/fb32/tmpk9izjd5d/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p'" in 0.0102 seconds and 2.9 Mi memory
2023-07-05 13:42:59.062058: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a93b/5c64/tmp6l3z0auk/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p'" in 0.0111 seconds and 2.9 Mi memory
2023-07-05 13:42:59.062181: Running the command: "cactus_analyseAssembly HG01978.2.sanitized.fa"
2023-07-05 13:42:59.062257: Running the command: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa"
2023-07-05 13:42:59.065156: Successfully ran: "cactus_analyseAssembly HG01978.2.sanitized.fa" in 0.0025 seconds and 1.1 Mi memory
2023-07-05 13:42:59.072164: Successfully ran: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa" in 0.0094 seconds and 1.1 Mi memory
2023-07-05 13:42:59.073149: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0964/dee0/tmpziahsc_c/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p"
2023-07-05 13:42:59.087581: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7dde/c7cf/tmptoy0aeq0/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
2023-07-05 13:42:59.088467: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5122/0930/tmp4obrivzo/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p'" in 0.5428 seconds and 51.9 Mi memory
2023-07-05 13:42:59.090970: Running the command: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa"
2023-07-05 13:42:59.115152: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7dde/c7cf/tmptoy0aeq0/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p'" in 0.0267 seconds and 3.2 Mi memory
2023-07-05 13:42:59.115355: Running the command: "cactus_analyseAssembly HG01123.2.sanitized.fa"
2023-07-05 13:42:59.129799: Successfully ran: "cactus_analyseAssembly HG01123.2.sanitized.fa" in 0.014 seconds and 1.2 Mi memory
2023-07-05 13:42:59.297062: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/322c/8c27/tmp2qisjkax/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p"
2023-07-05 13:42:59.302102: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/322c/8c27/tmp2qisjkax/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p'" in 0.0042 seconds and 3.1 Mi memory
2023-07-05 13:42:59.302257: Running the command: "cactus_analyseAssembly HG03492.2.sanitized.fa"
2023-07-05 13:42:59.304867: Successfully ran: "cactus_analyseAssembly HG03492.2.sanitized.fa" in 0.0022 seconds and 1.1 Mi memory
2023-07-05 13:42:59.309412: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4bc8/f732/tmp6ih6ukaa/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-05 13:42:59.309732: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0964/dee0/tmpziahsc_c/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p'" in 0.2353 seconds and 7.8 Mi memory
2023-07-05 13:42:59.310818: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1c2b/c4af/tmp4y8hbmhc/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p"
2023-07-05 13:42:59.311370: Running the command: "cactus_analyseAssembly HG03492.1.sanitized.fa"
2023-07-05 13:42:59.315179: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e563/7652/tmpq0_rwmic/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:42:59.317532: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/23ae/ee2e/tmpomm1nizk/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p"
2023-07-05 13:42:59.359085: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0bb3/0d22/tmpcnwzx19a/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
2023-07-05 13:42:59.359169: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6534/55e2/tmppv7g2_8d/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
2023-07-05 13:42:59.359195: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/79b0/0221/tmpg2ghxmlw/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p"
2023-07-05 13:42:59.359578: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a736/93a3/tmpqo8wahym/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p"
2023-07-05 13:42:59.362972: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ede7/d5f6/tmppu9ziiau/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p"
2023-07-05 13:42:59.366699: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/79b0/0221/tmpg2ghxmlw/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p'" in 0.0063 seconds and 3.0 Mi memory
2023-07-05 13:42:59.366967: Running the command: "cactus_analyseAssembly HG03492.1.sanitized.fa"
2023-07-05 13:42:59.369561: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ede7/d5f6/tmppu9ziiau/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p'" in 0.0055 seconds and 3.1 Mi memory
2023-07-05 13:42:59.369799: Running the command: "cactus_analyseAssembly HG02572.1.sanitized.fa"
2023-07-05 13:42:59.369815: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 0.0022 seconds and 1.1 Mi memory
2023-07-05 13:42:59.371577: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a736/93a3/tmpqo8wahym/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p'" in 0.011 seconds and 3.1 Mi memory
2023-07-05 13:42:59.371812: Running the command: "cactus_analyseAssembly HG01175.1.sanitized.fa"
2023-07-05 13:42:59.372394: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 0.0019 seconds and 1.1 Mi memory
2023-07-05 13:42:59.378541: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 0.0062 seconds and 1.2 Mi memory
2023-07-05 13:42:59.379894: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0bb3/0d22/tmpcnwzx19a/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p'" in 0.0198 seconds and 3.0 Mi memory
2023-07-05 13:42:59.380205: Running the command: "cactus_analyseAssembly HG02109.2.sanitized.fa"
2023-07-05 13:42:59.393289: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 0.0125 seconds and 2.9 Mi memory
2023-07-05 13:42:59.438582: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 0.4012 seconds and 55.5 Mi memory
2023-07-05 13:42:59.481294: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 0.1692 seconds and 7.8 Mi memory
2023-07-05 13:42:59.503685: Successfully ran: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa" in 0.4119 seconds and 51.9 Mi memory
2023-07-05 13:42:59.530980: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1c2b/c4af/tmp4y8hbmhc/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p'" in 0.2189 seconds and 8.3 Mi memory
2023-07-05 13:42:59.532605: Running the command: "cactus_analyseAssembly HG01243.1.sanitized.fa"
2023-07-05 13:42:59.534991: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e563/7652/tmpq0_rwmic/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p'" in 0.2185 seconds and 9.1 Mi memory
2023-07-05 13:42:59.535354: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4bc8/f732/tmp6ih6ukaa/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p'" in 0.2246 seconds and 8.4 Mi memory
2023-07-05 13:42:59.536255: Running the command: "cactus_analyseAssembly HG01109.1.sanitized.fa"
2023-07-05 13:42:59.536998: Running the command: "cactus_analyseAssembly HG01258.1.sanitized.fa"
2023-07-05 13:42:59.565535: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/23ae/ee2e/tmpomm1nizk/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p'" in 0.2467 seconds and 9.1 Mi memory
2023-07-05 13:42:59.567241: Running the command: "cactus_analyseAssembly HG01928.1.sanitized.fa"
2023-07-05 13:42:59.592619: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6534/55e2/tmppv7g2_8d/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p'" in 0.2323 seconds and 9.1 Mi memory
2023-07-05 13:42:59.594202: Running the command: "cactus_analyseAssembly HG02717.1.sanitized.fa"
2023-07-05 13:42:59.950773: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b962/ab49/tmpxsehkz5p/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-05 13:42:59.950952: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/47f3/f9b2/tmpj_eebv6u/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
2023-07-05 13:42:59.958935: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b962/ab49/tmpxsehkz5p/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p'" in 0.0071 seconds and 3.1 Mi memory
2023-07-05 13:42:59.959107: Running the command: "cactus_analyseAssembly HG00621.1.sanitized.fa"
2023-07-05 13:42:59.960271: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/47f3/f9b2/tmpj_eebv6u/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p'" in 0.0083 seconds and 3.1 Mi memory
2023-07-05 13:42:59.960443: Running the command: "cactus_analyseAssembly HG00621.2.sanitized.fa"
2023-07-05 13:42:59.962233: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 0.0026 seconds and 1.1 Mi memory
2023-07-05 13:42:59.964357: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 0.0034 seconds and 1.2 Mi memory
2023-07-05 13:42:59.972127: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/01b5/9998/tmpxotx07dh/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p"
2023-07-05 13:42:59.973071: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c21c/a559/tmpf0q3y9jk/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p"
2023-07-05 13:42:59.978646: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 0.4416 seconds and 9.1 Mi memory
2023-07-05 13:42:59.981295: Successfully ran: "cactus_analyseAssembly HG01243.1.sanitized.fa" in 0.4478 seconds and 8.3 Mi memory
2023-07-05 13:42:59.982770: Successfully ran: "cactus_analyseAssembly HG01258.1.sanitized.fa" in 0.4449 seconds and 8.3 Mi memory
2023-07-05 13:42:59.992710: Successfully ran: "cactus_analyseAssembly HG02717.1.sanitized.fa" in 0.3978 seconds and 9.1 Mi memory
2023-07-05 13:42:59.998194: Successfully ran: "cactus_analyseAssembly HG01928.1.sanitized.fa" in 0.4301 seconds and 9.1 Mi memory
2023-07-05 13:43:00.067667: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9552/d867/tmpsyk9620d/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p"
2023-07-05 13:43:00.074294: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9552/d867/tmpsyk9620d/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p'" in 0.0055 seconds and 3.1 Mi memory
2023-07-05 13:43:00.074465: Running the command: "cactus_analyseAssembly HG01891.1.sanitized.fa"
2023-07-05 13:43:00.077065: Successfully ran: "cactus_analyseAssembly HG01891.1.sanitized.fa" in 0.0021 seconds and 1.1 Mi memory
2023-07-05 13:43:00.125191: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/8f06/8074/tmpbgezy1wf/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p"
2023-07-05 13:43:00.125196: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/8def/045d/tmp9c4i5ngm/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p"
2023-07-05 13:43:00.132669: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/8def/045d/tmp9c4i5ngm/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p'" in 0.0065 seconds and 3.1 Mi memory
2023-07-05 13:43:00.132838: Running the command: "cactus_analyseAssembly HG01978.1.sanitized.fa"
2023-07-05 13:43:00.192235: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c21c/a559/tmpf0q3y9jk/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p'" in 0.218 seconds and 9.1 Mi memory
2023-07-05 13:43:00.193451: Running the command: "cactus_analyseAssembly HG01952.1.sanitized.fa"
2023-07-05 13:43:00.288299: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ec8e/e33b/tmpaj8fhstu/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p'" in 0.1978 seconds and 8.9 Mi memory
2023-07-05 13:43:00.289858: Running the command: "cactus_analyseAssembly HG03098.1.sanitized.fa"
2023-07-05 13:43:00.301276: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/52c4/0538/tmp_ljj50uk/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p'" in 0.214 seconds and 8.4 Mi memory
2023-07-05 13:43:00.302857: Running the command: "cactus_analyseAssembly HG02572.1.sanitized.fa"
2023-07-05 13:43:00.338074: Successfully ran: "cactus_analyseAssembly HG02055.1.sanitized.fa" in 0.1604 seconds and 9.3 Mi memory
Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-ucv58s3y v1 with job batch system ID: 552 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 13:43:00.343499: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e328/eef2/tmptqyjccde/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
2023-07-05 13:43:00.363612: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3221/790f/tmpwf3gl649/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p"
2023-07-05 13:43:00.365989: Successfully ran: "cactus_analyseAssembly HG01952.1.sanitized.fa" in 0.1717 seconds and 8.8 Mi memory
2023-07-05 13:43:00.371243: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3221/790f/tmpwf3gl649/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 0.0068 seconds and 3.0 Mi memory
2023-07-05 13:43:00.371416: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-05 13:43:00.410368: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/395c/b866/tmpmpkgtt29/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-05 13:43:00.428230: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/facc/17c1/tmphf0yk6ih/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
2023-07-05 13:43:00.429110: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/395c/b866/tmpmpkgtt29/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p'" in 0.0178 seconds and 3.1 Mi memory
2023-07-05 13:43:00.429347: Running the command: "cactus_analyseAssembly HG00733.1.sanitized.fa"
2023-07-05 13:43:00.506191: Successfully ran: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa" in 0.0703 seconds and 1.7 Mi memory
2023-07-05 13:43:00.605648: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b1b4/7cd6/tmpjpoxd03l/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p"
2023-07-05 13:43:00.605816: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/08eb/bae2/tmp7r4l12yo/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p"
2023-07-05 13:43:00.612113: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b1b4/7cd6/tmpjpoxd03l/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p'" in 0.0056 seconds and 3.1 Mi memory
2023-07-05 13:43:00.612300: Running the command: "cactus_analyseAssembly HG03486.2.sanitized.fa"
2023-07-05 13:43:00.613875: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/08eb/bae2/tmp7r4l12yo/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p'" in 0.0072 seconds and 3.1 Mi memory
2023-07-05 13:43:00.614034: Running the command: "cactus_analyseAssembly HG02818.1.sanitized.fa"
2023-07-05 13:43:00.614771: Successfully ran: "cactus_analyseAssembly HG03486.2.sanitized.fa" in 0.002 seconds and 1.1 Mi memory
2023-07-05 13:43:00.617737: Successfully ran: "cactus_analyseAssembly HG02818.1.sanitized.fa" in 0.0032 seconds and 1.2 Mi memory
2023-07-05 13:43:00.718074: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6038/5ee4/tmpb_jkb490/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p"
2023-07-05 13:43:00.722997: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6038/5ee4/tmpb_jkb490/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p'" in 0.004 seconds and 2.9 Mi memory
2023-07-05 13:43:00.723158: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
2023-07-05 13:43:00.725112: Successfully ran: "cactus_analyseAssembly HG03098.2.sanitized.fa" in 0.0015 seconds and 1.1 Mi memory
2023-07-05 13:43:00.918790: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/facc/17c1/tmphf0yk6ih/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p'" in 0.4894 seconds and 55.5 Mi memory
2023-07-05 13:43:00.919904: Running the command: "cactus_analyseAssembly CHM13.sanitized.fa"
2023-07-05 13:43:01.318966: Successfully ran: "cactus_analyseAssembly CHM13.sanitized.fa" in 0.398 seconds and 55.5 Mi memory
Got message from job at time 07-05-2023 13:43:02: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 1 Total-length: 32904 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32904 Median-sequence-length: 32904 Max-sequence-length: 32904 Min-sequence-length: 32904

Got message from job at time 07-05-2023 13:43:02: Job used more disk than requested. For CWL, consider increasing the outdirMin requirement, otherwise, consider increasing the disk requirement. Job files/for-job/kind-sanitize_fasta_header/instance-0ei078vj/cleanup/file-b8d2f6d8410648c980ccb30cae25511e/stream used 160.79% disk (44.0 KiB [45056B] used, 27.4 KiB [28021B] requested).
Got message from job at time 07-05-2023 13:43:02: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 1 Total-length: 16563 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16563 Median-sequence-length: 16563 Max-sequence-length: 16563 Min-sequence-length: 16563

Got message from job at time 07-05-2023 13:43:02: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 1 Total-length: 16567 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16567 Median-sequence-length: 16567 Max-sequence-length: 16567 Min-sequence-length: 16567

Got message from job at time 07-05-2023 13:43:02: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 1 Total-length: 16566 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16566 Median-sequence-length: 16566 Max-sequence-length: 16566 Min-sequence-length: 16566

Got message from job at time 07-05-2023 13:43:02: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 1 Total-length: 171823 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 171823 Median-sequence-length: 171823 Max-sequence-length: 171823 Min-sequence-length: 171823

Got message from job at time 07-05-2023 13:43:02: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 1 Total-length: 16567 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16567 Median-sequence-length: 16567 Max-sequence-length: 16567 Min-sequence-length: 16567

Got message from job at time 07-05-2023 13:43:02: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 1 Total-length: 16567 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16567 Median-sequence-length: 16567 Max-sequence-length: 16567 Min-sequence-length: 16567

Got message from job at time 07-05-2023 13:43:03: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 1 Total-length: 16573 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16573 Median-sequence-length: 16573 Max-sequence-length: 16573 Min-sequence-length: 16573

Got message from job at time 07-05-2023 13:43:03: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 1 Total-length: 16569 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16569 Median-sequence-length: 16569 Max-sequence-length: 16569 Min-sequence-length: 16569

Got message from job at time 07-05-2023 13:43:03: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 1 Total-length: 16570 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16570 Median-sequence-length: 16570 Max-sequence-length: 16570 Min-sequence-length: 16570

Got message from job at time 07-05-2023 13:43:04: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 2 Total-length: 185456 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 117606 Median-sequence-length: 117606 Max-sequence-length: 117606 Min-sequence-length: 67850

Got message from job at time 07-05-2023 13:43:04: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 3 Total-length: 85904 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26453 Median-sequence-length: 26453 Max-sequence-length: 38498 Min-sequence-length: 20953

Got message from job at time 07-05-2023 13:43:04: Job used more disk than requested. For CWL, consider increasing the outdirMin requirement, otherwise, consider increasing the disk requirement. Job files/for-job/kind-sanitize_fasta_header/instance-qy_xp3x5/cleanup/file-47755e1104d94fed86fca849a1de6f71/stream used 130.42% disk (96.0 KiB [98304B] used, 73.6 KiB [75376B] requested).
Got message from job at time 07-05-2023 13:43:04: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 182 Total-length: 6910364 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 38792 Median-sequence-length: 36071 Max-sequence-length: 142029 Min-sequence-length: 22580

Got message from job at time 07-05-2023 13:43:04: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 16569 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16569 Median-sequence-length: 16569 Max-sequence-length: 16569 Min-sequence-length: 16569

Got message from job at time 07-05-2023 13:43:04: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 16569 Proportion-repeat-masked: 0.000060 ProportionNs: 0.000060 Total-Ns: 1 N50: 16569 Median-sequence-length: 16569 Max-sequence-length: 16569 Min-sequence-length: 16569

Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-qpx3bg6j v1 with job batch system ID: 553 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:04: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 1 Total-length: 16569 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16569 Median-sequence-length: 16569 Max-sequence-length: 16569 Min-sequence-length: 16569

Got message from job at time 07-05-2023 13:43:04: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 1 Total-length: 42475 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42475 Median-sequence-length: 42475 Max-sequence-length: 42475 Min-sequence-length: 42475

Got message from job at time 07-05-2023 13:43:04: Job used more disk than requested. For CWL, consider increasing the outdirMin requirement, otherwise, consider increasing the disk requirement. Job files/for-job/kind-sanitize_fasta_header/instance-0b7e0ron/cleanup/file-70ea8268943f404b8fae8baa7325047b/stream used 129.83% disk (52.0 KiB [53248B] used, 40.1 KiB [41013B] requested).
Got message from job at time 07-05-2023 13:43:04: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 1 Total-length: 16571 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16571 Median-sequence-length: 16571 Max-sequence-length: 16571 Min-sequence-length: 16571

Got message from job at time 07-05-2023 13:43:04: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 1 Total-length: 16570 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16570 Median-sequence-length: 16570 Max-sequence-length: 16570 Min-sequence-length: 16570

Got message from job at time 07-05-2023 13:43:04: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 1 Total-length: 16580 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16580 Median-sequence-length: 16580 Max-sequence-length: 16580 Min-sequence-length: 16580

Got message from job at time 07-05-2023 13:43:04: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 1 Total-length: 16568 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16568 Median-sequence-length: 16568 Max-sequence-length: 16568 Min-sequence-length: 16568

Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-4mr0knbg v1 with job batch system ID: 554 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:04: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 1 Total-length: 16566 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16566 Median-sequence-length: 16566 Max-sequence-length: 16566 Min-sequence-length: 16566

Got message from job at time 07-05-2023 13:43:04: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 1 Total-length: 16569 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16569 Median-sequence-length: 16569 Max-sequence-length: 16569 Min-sequence-length: 16569

Got message from job at time 07-05-2023 13:43:05: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 171823 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 171823 Median-sequence-length: 171823 Max-sequence-length: 171823 Min-sequence-length: 171823

Got message from job at time 07-05-2023 13:43:05: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 1 Total-length: 16568 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16568 Median-sequence-length: 16568 Max-sequence-length: 16568 Min-sequence-length: 16568

Got message from job at time 07-05-2023 13:43:05: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 1 Total-length: 16571 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16571 Median-sequence-length: 16571 Max-sequence-length: 16571 Min-sequence-length: 16571

Got message from job at time 07-05-2023 13:43:05: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 1 Total-length: 16572 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16572 Median-sequence-length: 16572 Max-sequence-length: 16572 Min-sequence-length: 16572

Got message from job at time 07-05-2023 13:43:05: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 1 Total-length: 62875 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 62875 Median-sequence-length: 62875 Max-sequence-length: 62875 Min-sequence-length: 62875

Got message from job at time 07-05-2023 13:43:05: Job used more disk than requested. For CWL, consider increasing the outdirMin requirement, otherwise, consider increasing the disk requirement. Job files/for-job/kind-sanitize_fasta_header/instance-09v2w0o2/cleanup/file-41774cf467834378a2c4dd0885375caa/stream used 135.71% disk (72.0 KiB [73728B] used, 53.1 KiB [54327B] requested).
Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-rfbu9ou3 v1 with job batch system ID: 555 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:05: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 1 Total-length: 16573 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16573 Median-sequence-length: 16573 Max-sequence-length: 16573 Min-sequence-length: 16573

Got message from job at time 07-05-2023 13:43:05: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 4 Total-length: 714671 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 363111 Median-sequence-length: 166592 Max-sequence-length: 363111 Min-sequence-length: 63243

Got message from job at time 07-05-2023 13:43:05: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 1 Total-length: 51211 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51211 Median-sequence-length: 51211 Max-sequence-length: 51211 Min-sequence-length: 51211

Got message from job at time 07-05-2023 13:43:05: Job used more disk than requested. For CWL, consider increasing the outdirMin requirement, otherwise, consider increasing the disk requirement. Job files/for-job/kind-sanitize_fasta_header/instance-g6rhguqs/cleanup/file-a65939cf27db44a3b492bbc0119f936c/stream used 166.05% disk (60.0 KiB [61440B] used, 36.1 KiB [37002B] requested).
Got message from job at time 07-05-2023 13:43:05: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 1 Total-length: 25018 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25018 Median-sequence-length: 25018 Max-sequence-length: 25018 Min-sequence-length: 25018

Got message from job at time 07-05-2023 13:43:05: Job used more disk than requested. For CWL, consider increasing the outdirMin requirement, otherwise, consider increasing the disk requirement. Job files/for-job/kind-sanitize_fasta_header/instance-h87mhzpz/cleanup/file-b02065e975d846ec9e047d89bb57e1f8/stream used 127.57% disk (36.0 KiB [36864B] used, 28.2 KiB [28896B] requested).
Got message from job at time 07-05-2023 13:43:05: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 1 Total-length: 16570 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16570 Median-sequence-length: 16570 Max-sequence-length: 16570 Min-sequence-length: 16570

Got message from job at time 07-05-2023 13:43:05: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 1 Total-length: 16569 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16569 Median-sequence-length: 16569 Max-sequence-length: 16569 Min-sequence-length: 16569

Got message from job at time 07-05-2023 13:43:05: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 1 Total-length: 30356 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30356 Median-sequence-length: 30356 Max-sequence-length: 30356 Min-sequence-length: 30356

Got message from job at time 07-05-2023 13:43:05: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 1 Total-length: 41022 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41022 Median-sequence-length: 41022 Max-sequence-length: 41022 Min-sequence-length: 41022

Got message from job at time 07-05-2023 13:43:05: Job used more disk than requested. For CWL, consider increasing the outdirMin requirement, otherwise, consider increasing the disk requirement. Job files/for-job/kind-sanitize_fasta_header/instance-o553sbeh/cleanup/file-0ef02b7e1ddd420e99e38c82ab4235bc/stream used 135.57% disk (52.0 KiB [53248B] used, 38.4 KiB [39277B] requested).
Got message from job at time 07-05-2023 13:43:05: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 2 Total-length: 177240 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 150422 Median-sequence-length: 150422 Max-sequence-length: 150422 Min-sequence-length: 26818

Got message from job at time 07-05-2023 13:43:05: Job used more disk than requested. For CWL, consider increasing the outdirMin requirement, otherwise, consider increasing the disk requirement. Job files/for-job/kind-sanitize_fasta_header/instance-2eqzkkf7/cleanup/file-edbd981761aa4ea7bbb84283d12c9ac0/stream used 128.62% disk (184.0 KiB [188416B] used, 143.1 KiB [146496B] requested).
Got message from job at time 07-05-2023 13:43:05: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 1 Total-length: 16560 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16560 Median-sequence-length: 16560 Max-sequence-length: 16560 Min-sequence-length: 16560

Got message from job at time 07-05-2023 13:43:05: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 1 Total-length: 16569 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16569 Median-sequence-length: 16569 Max-sequence-length: 16569 Min-sequence-length: 16569

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 1 Total-length: 16567 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16567 Median-sequence-length: 16567 Max-sequence-length: 16567 Min-sequence-length: 16567

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 1 Total-length: 16571 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16571 Median-sequence-length: 16571 Max-sequence-length: 16571 Min-sequence-length: 16571

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 1 Total-length: 16567 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16567 Median-sequence-length: 16567 Max-sequence-length: 16567 Min-sequence-length: 16567

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 1 Total-length: 16566 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16566 Median-sequence-length: 16566 Max-sequence-length: 16566 Min-sequence-length: 16566

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-1z0w5mnx v1 with job batch system ID: 556 and disk: 163.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-950b_b9z v1 with job batch system ID: 557 and disk: 163.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-3e47y1y0 v1 with job batch system ID: 558 and disk: 169.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-l24aevbo v1 with job batch system ID: 559 and disk: 163.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-g7ziaqfv v1 with job batch system ID: 560 and disk: 162.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-ujxmwijg v1 with job batch system ID: 561 and disk: 163.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-64wc1nuy v1 with job batch system ID: 562 and disk: 168.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-uwpv25eh v1 with job batch system ID: 563 and disk: 174.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-a9tdangb v1 with job batch system ID: 564 and disk: 172.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-25nkbj50 v1 with job batch system ID: 565 and disk: 172.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-cnoocqlr v1 with job batch system ID: 566 and disk: 161.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-_3dtrtjl v1 with job batch system ID: 567 and disk: 172.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-gbezsa48 v1 with job batch system ID: 568 and disk: 166.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-ul84ij9x v1 with job batch system ID: 569 and disk: 163.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-cx9iw76l v1 with job batch system ID: 570 and disk: 161.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-qplqj9gs v1 with job batch system ID: 571 and disk: 163.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-vngw_drc v1 with job batch system ID: 572 and disk: 163.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-fs5v9b84 v1 with job batch system ID: 573 and disk: 162.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-fzwwg393 v1 with job batch system ID: 574 and disk: 161.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-mgv6alyl v1 with job batch system ID: 575 and disk: 158.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-15m2t3kz v1 with job batch system ID: 576 and disk: 158.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1c8g4hsg v1 with job batch system ID: 577 and disk: 174.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-__q129ks v1 with job batch system ID: 578 and disk: 158.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-x72457hg v1 with job batch system ID: 579 and disk: 178.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-ii1sbl2c v1 with job batch system ID: 580 and disk: 161.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-hecac71_ v1 with job batch system ID: 581 and disk: 167.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-e4vjo3mb v1 with job batch system ID: 582 and disk: 164.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-7ypq5_oy v1 with job batch system ID: 583 and disk: 162.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_cs73sml v1 with job batch system ID: 584 and disk: 162.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-mhz2cihx v1 with job batch system ID: 585 and disk: 175.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-efz3131t v1 with job batch system ID: 586 and disk: 169.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-ikmkagw6 v1 with job batch system ID: 587 and disk: 165.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-9plze3h8 v1 with job batch system ID: 588 and disk: 163.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-gj9uys9p v1 with job batch system ID: 589 and disk: 165.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-i5_5v0vk v1 with job batch system ID: 590 and disk: 175.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-kt4dm3ok v1 with job batch system ID: 591 and disk: 179.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-ib5na8vh v1 with job batch system ID: 592 and disk: 162.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4d6saiob v1 with job batch system ID: 593 and disk: 163.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-6__1dpiz v1 with job batch system ID: 594 and disk: 164.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-cwm191e_ v1 with job batch system ID: 595 and disk: 163.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-f_4hbvhq v1 with job batch system ID: 596 and disk: 164.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-3qviy__r v1 with job batch system ID: 597 and disk: 163.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-qwbfxzlv v1 with job batch system ID: 598 and disk: 162.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-koxlrz8f v1 with job batch system ID: 599 and disk: 167.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-ss1b14vu v1 with job batch system ID: 600 and disk: 167.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-z29tf7a9 v1 with job batch system ID: 601 and disk: 164.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-fvvv5d3t v1 with job batch system ID: 602 and disk: 164.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-stt3prn2 v1 with job batch system ID: 603 and disk: 167.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-gno4k18j v1 with job batch system ID: 604 and disk: 171.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-90pafhay v1 with job batch system ID: 605 and disk: 161.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ygr1zb3d v1 with job batch system ID: 606 and disk: 179.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-67_mk5ms v1 with job batch system ID: 607 and disk: 161.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-zy0x6bnj v1 with job batch system ID: 608 and disk: 163.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-2z2mvijb v1 with job batch system ID: 609 and disk: 172.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 1 Total-length: 16571 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16571 Median-sequence-length: 16571 Max-sequence-length: 16571 Min-sequence-length: 16571

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-hk8vgfxw v1 with job batch system ID: 610 and disk: 158.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-k3au4n00 v1 with job batch system ID: 611 and disk: 170.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-fijkqca9 v1 with job batch system ID: 612 and disk: 163.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-r0h8qrdj v1 with job batch system ID: 613 and disk: 163.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-3r0caoab v1 with job batch system ID: 614 and disk: 159.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-pk6t03_n v1 with job batch system ID: 615 and disk: 164.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-q5fqmuyi v1 with job batch system ID: 616 and disk: 177.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_oi5pop_ v1 with job batch system ID: 617 and disk: 164.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-n5o684uv v1 with job batch system ID: 618 and disk: 164.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-ku4w9ytr v1 with job batch system ID: 619 and disk: 163.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-eb1mwn8y v1 with job batch system ID: 620 and disk: 171.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-441tg1z1 v1 with job batch system ID: 621 and disk: 160.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-unub_7ws v1 with job batch system ID: 622 and disk: 158.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1wsjumqa v1 with job batch system ID: 623 and disk: 163.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-vwimg8ao v1 with job batch system ID: 624 and disk: 162.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-eus8yvbw v1 with job batch system ID: 625 and disk: 162.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-wg_boylz v1 with job batch system ID: 626 and disk: 168.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-ao9hu00i v1 with job batch system ID: 627 and disk: 159.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-5mz8klfk v1 with job batch system ID: 628 and disk: 179.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-2gxfg_ns v1 with job batch system ID: 629 and disk: 172.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-gtw9opfh v1 with job batch system ID: 630 and disk: 162.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-mn0n_1pb v1 with job batch system ID: 631 and disk: 175.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-l3sclv1k v1 with job batch system ID: 632 and disk: 163.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-pos6tj6p v1 with job batch system ID: 633 and disk: 158.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-c6g6gxkx v1 with job batch system ID: 634 and disk: 161.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-r27q82yg v1 with job batch system ID: 635 and disk: 162.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-hbg_7va7 v1 with job batch system ID: 636 and disk: 167.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-u4nrwqr9 v1 with job batch system ID: 637 and disk: 165.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-6wmpcwmq v1 with job batch system ID: 638 and disk: 178.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-p6kfr7t5 v1 with job batch system ID: 639 and disk: 160.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-1svix5p6 v1 with job batch system ID: 640 and disk: 178.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7e5kdbx8 v1 with job batch system ID: 641 and disk: 167.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-0t2b83df v1 with job batch system ID: 642 and disk: 162.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ug_oqe1j v1 with job batch system ID: 643 and disk: 176.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-3gr6bh67 v1 with job batch system ID: 644 and disk: 165.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-8i6bxqjv v1 with job batch system ID: 645 and disk: 162.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-a8_5492v v1 with job batch system ID: 646 and disk: 163.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 1 Total-length: 52844 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52844 Median-sequence-length: 52844 Max-sequence-length: 52844 Min-sequence-length: 52844

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 1 Total-length: 16570 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16570 Median-sequence-length: 16570 Max-sequence-length: 16570 Min-sequence-length: 16570

Got message from job at time 07-05-2023 13:43:06: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 8 Total-length: 1984445 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 1433384 Median-sequence-length: 66796 Max-sequence-length: 1433384 Min-sequence-length: 23652

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 2 Total-length: 150851 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 110018 Median-sequence-length: 110018 Max-sequence-length: 110018 Min-sequence-length: 40833

Got message from job at time 07-05-2023 13:43:06: Job used more disk than requested. For CWL, consider increasing the outdirMin requirement, otherwise, consider increasing the disk requirement. Job files/for-job/kind-sanitize_fasta_header/instance-n3jm_ha_/cleanup/file-28710be5cbc64fe19a7755237662c9e4/stream used 135.47% disk (160.0 KiB [163840B] used, 118.1 KiB [120939B] requested).
Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 1 Total-length: 16562 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16562 Median-sequence-length: 16562 Max-sequence-length: 16562 Min-sequence-length: 16562

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 8 Total-length: 427873 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 117669 Median-sequence-length: 26945 Max-sequence-length: 155215 Min-sequence-length: 20850

Got message from job at time 07-05-2023 13:43:06: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 1 Total-length: 16567 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16567 Median-sequence-length: 16567 Max-sequence-length: 16567 Min-sequence-length: 16567

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 1 Total-length: 458089 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 458089 Median-sequence-length: 458089 Max-sequence-length: 458089 Min-sequence-length: 458089

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 1 Total-length: 16564 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16564 Median-sequence-length: 16564 Max-sequence-length: 16564 Min-sequence-length: 16564

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 1 Total-length: 76828 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 76828 Median-sequence-length: 76828 Max-sequence-length: 76828 Min-sequence-length: 76828

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 1 Total-length: 16563 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16563 Median-sequence-length: 16563 Max-sequence-length: 16563 Min-sequence-length: 16563

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 3 Total-length: 311527 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 226197 Median-sequence-length: 46220 Max-sequence-length: 226197 Min-sequence-length: 39110

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 1 Total-length: 17101 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17101 Median-sequence-length: 17101 Max-sequence-length: 17101 Min-sequence-length: 17101

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 1 Total-length: 16571 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16571 Median-sequence-length: 16571 Max-sequence-length: 16571 Min-sequence-length: 16571

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 1 Total-length: 1198422 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 1198422 Median-sequence-length: 1198422 Max-sequence-length: 1198422 Min-sequence-length: 1198422

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 1 Total-length: 16569 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16569 Median-sequence-length: 16569 Max-sequence-length: 16569 Min-sequence-length: 16569

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 3 Total-length: 400511 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 134016 Median-sequence-length: 134016 Max-sequence-length: 148626 Min-sequence-length: 117869

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 2 Total-length: 244914 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 127279 Median-sequence-length: 127279 Max-sequence-length: 127279 Min-sequence-length: 117635

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 1 Total-length: 16569 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16569 Median-sequence-length: 16569 Max-sequence-length: 16569 Min-sequence-length: 16569

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-_gochohf v1 with job batch system ID: 647 and disk: 239.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-mvqi5q46 v1 with job batch system ID: 648 and disk: 239.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-saxw7mgy v1 with job batch system ID: 649 and disk: 240.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-l8l3n6l8 v1 with job batch system ID: 650 and disk: 239.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/2/instance-loxuvibd v1 with job batch system ID: 651 and disk: 241.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-aom4nhhv v1 with job batch system ID: 652 and disk: 240.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-cm8ha9xs v1 with job batch system ID: 653 and disk: 240.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-i9mlq52h v1 with job batch system ID: 654 and disk: 240.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-uws7viyu v1 with job batch system ID: 655 and disk: 239.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 3 Total-length: 177989 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 59331 Median-sequence-length: 59331 Max-sequence-length: 69184 Min-sequence-length: 49474

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-9xvagbjn v1 with job batch system ID: 656 and disk: 240.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-ogcy1_g7 v1 with job batch system ID: 657 and disk: 239.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-wgqceg6l v1 with job batch system ID: 658 and disk: 241.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-1fb76hw3 v1 with job batch system ID: 659 and disk: 240.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-eck0wvkg v1 with job batch system ID: 660 and disk: 240.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-60uf4uo8 v1 with job batch system ID: 661 and disk: 240.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-qg4ps8l2 v1 with job batch system ID: 662 and disk: 240.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-jj0vjsia v1 with job batch system ID: 663 and disk: 243.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-xn_1_y29 v1 with job batch system ID: 664 and disk: 240.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-082zuf2j v1 with job batch system ID: 665 and disk: 239.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-uvvarm6p v1 with job batch system ID: 666 and disk: 240.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-pzoru4q0 v1 with job batch system ID: 667 and disk: 240.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_uuho37y v1 with job batch system ID: 668 and disk: 240.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-ombiovho v1 with job batch system ID: 669 and disk: 240.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-dfi9ba6t v1 with job batch system ID: 670 and disk: 239.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-57bimxx4 v1 with job batch system ID: 671 and disk: 240.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-l6gd60km v1 with job batch system ID: 672 and disk: 240.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:06: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 153 Total-length: 10559148 Proportion-repeat-masked: 0.046431 ProportionNs: 0.046431 Total-Ns: 490270 N50: 176845 Median-sequence-length: 7642 Max-sequence-length: 1872759 Min-sequence-length: 970

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-h_q2mdvz v1 with job batch system ID: 673 and disk: 234.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-wbc9mlcz v1 with job batch system ID: 674 and disk: 240.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-q2lqjl4i v1 with job batch system ID: 675 and disk: 240.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-i12vhlpf v1 with job batch system ID: 676 and disk: 240.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-2kuccas7 v1 with job batch system ID: 677 and disk: 240.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-sflc7lbu v1 with job batch system ID: 678 and disk: 239.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-csrlmb4c v1 with job batch system ID: 679 and disk: 240.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-jr7enzo4 v1 with job batch system ID: 680 and disk: 240.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 2 Total-length: 201501 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 143152 Median-sequence-length: 143152 Max-sequence-length: 143152 Min-sequence-length: 58349

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-5e1tqzwf v1 with job batch system ID: 681 and disk: 240.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-62w57src v1 with job batch system ID: 682 and disk: 242.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-l_oldn91 v1 with job batch system ID: 683 and disk: 240.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-ulj6_vqg v1 with job batch system ID: 684 and disk: 240.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-hkvqn426 v1 with job batch system ID: 685 and disk: 240.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-m7rqo9y5 v1 with job batch system ID: 686 and disk: 240.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-98bqvqv7 v1 with job batch system ID: 687 and disk: 240.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-1lglgd3u v1 with job batch system ID: 688 and disk: 247.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-8fo81mll v1 with job batch system ID: 689 and disk: 240.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-ml8stq3l v1 with job batch system ID: 690 and disk: 240.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-wut5brh8 v1 with job batch system ID: 691 and disk: 239.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-qylnvdqk v1 with job batch system ID: 692 and disk: 240.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-cojhcctp v1 with job batch system ID: 693 and disk: 240.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-qy92t_9i v1 with job batch system ID: 694 and disk: 240.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-n87e5_2n v1 with job batch system ID: 695 and disk: 239.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-sf936hti v1 with job batch system ID: 696 and disk: 240.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-ivp5j9dq v1 with job batch system ID: 697 and disk: 240.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 4 Total-length: 1741890 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 1456235 Median-sequence-length: 134950 Max-sequence-length: 1456235 Min-sequence-length: 51130

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-hrdhso0q v1 with job batch system ID: 698 and disk: 239.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-e5ldhv22 v1 with job batch system ID: 699 and disk: 240.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-wnezlx8i v1 with job batch system ID: 700 and disk: 240.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-j2j7mr7_ v1 with job batch system ID: 701 and disk: 240.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7vikfu8m v1 with job batch system ID: 702 and disk: 240.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-689rta06 v1 with job batch system ID: 703 and disk: 241.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 1 Total-length: 249168 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 249168 Median-sequence-length: 249168 Max-sequence-length: 249168 Min-sequence-length: 249168

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-yw8m26lu v1 with job batch system ID: 704 and disk: 240.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-aqhgj_9u v1 with job batch system ID: 705 and disk: 243.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-krmudjtz v1 with job batch system ID: 706 and disk: 241.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-2lvq7nv8 v1 with job batch system ID: 707 and disk: 241.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-0nhv18d3 v1 with job batch system ID: 708 and disk: 240.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ef639muk v1 with job batch system ID: 709 and disk: 240.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-hl5sqd77 v1 with job batch system ID: 710 and disk: 239.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/2/instance-li1zawkq v1 with job batch system ID: 711 and disk: 240.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-vegspmn2 v1 with job batch system ID: 712 and disk: 240.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-rcko502u v1 with job batch system ID: 713 and disk: 240.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-rz3jas9q v1 with job batch system ID: 714 and disk: 242.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-x068pn3i v1 with job batch system ID: 715 and disk: 240.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-7d017pos v1 with job batch system ID: 716 and disk: 240.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-soyqadhr v1 with job batch system ID: 717 and disk: 240.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:06: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 5 Total-length: 1805319 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 1425676 Median-sequence-length: 121344 Max-sequence-length: 1425676 Min-sequence-length: 64635

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-18jh7mv3 v1 with job batch system ID: 718 and disk: 240.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-c6wup12b v1 with job batch system ID: 719 and disk: 239.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-xp6vw0vf v1 with job batch system ID: 720 and disk: 240.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-h2m0n4tu v1 with job batch system ID: 721 and disk: 240.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-oobxo4fl v1 with job batch system ID: 722 and disk: 240.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-tz_z3ip_ v1 with job batch system ID: 723 and disk: 239.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-guoay5fr v1 with job batch system ID: 724 and disk: 238.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 1 Total-length: 223129 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 223129 Median-sequence-length: 223129 Max-sequence-length: 223129 Min-sequence-length: 223129

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-af8meyqf v1 with job batch system ID: 725 and disk: 240.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-wml6pw3y v1 with job batch system ID: 726 and disk: 240.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-9fawvpe7 v1 with job batch system ID: 727 and disk: 240.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-u0hf8uyx v1 with job batch system ID: 728 and disk: 241.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-4mn9og_g v1 with job batch system ID: 729 and disk: 240.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-twmooopw v1 with job batch system ID: 730 and disk: 240.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-di9tn2ev v1 with job batch system ID: 731 and disk: 240.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-z2h2te_c v1 with job batch system ID: 732 and disk: 240.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-lm2sttf8 v1 with job batch system ID: 733 and disk: 240.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-w83oxnh5 v1 with job batch system ID: 734 and disk: 239.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-o502t7xt v1 with job batch system ID: 735 and disk: 241.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-pcqp1xpd v1 with job batch system ID: 736 and disk: 249.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-ab1n_vok v1 with job batch system ID: 737 and disk: 240.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 1 Total-length: 16569 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16569 Median-sequence-length: 16569 Max-sequence-length: 16569 Min-sequence-length: 16569

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 1 Total-length: 28860 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28860 Median-sequence-length: 28860 Max-sequence-length: 28860 Min-sequence-length: 28860

Got message from job at time 07-05-2023 13:43:06: Job used more disk than requested. For CWL, consider increasing the outdirMin requirement, otherwise, consider increasing the disk requirement. Job files/for-job/kind-sanitize_fasta_header/instance-n2cl9twe/cleanup/file-9c663986934741e29db37f9d8f6a9b3e/stream used 145.16% disk (40.0 KiB [40960B] used, 27.6 KiB [28217B] requested).
Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 1 Total-length: 16569 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16569 Median-sequence-length: 16569 Max-sequence-length: 16569 Min-sequence-length: 16569

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 1 Total-length: 16567 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16567 Median-sequence-length: 16567 Max-sequence-length: 16567 Min-sequence-length: 16567

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 1 Total-length: 118146 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 118146 Median-sequence-length: 118146 Max-sequence-length: 118146 Min-sequence-length: 118146

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 2 Total-length: 149836 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 116667 Median-sequence-length: 116667 Max-sequence-length: 116667 Min-sequence-length: 33169

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 1 Total-length: 153071 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 153071 Median-sequence-length: 153071 Max-sequence-length: 153071 Min-sequence-length: 153071

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 1 Total-length: 57901 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 57901 Median-sequence-length: 57901 Max-sequence-length: 57901 Min-sequence-length: 57901

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 1 Total-length: 30277 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30277 Median-sequence-length: 30277 Max-sequence-length: 30277 Min-sequence-length: 30277

Got message from job at time 07-05-2023 13:43:06: Job used more disk than requested. For CWL, consider increasing the outdirMin requirement, otherwise, consider increasing the disk requirement. Job files/for-job/kind-sanitize_fasta_header/instance-e5ec1t4n/cleanup/file-5da14b8bc2624f789b79dbc2e69c6e1e/stream used 126.87% disk (40.0 KiB [40960B] used, 31.5 KiB [32284B] requested).
Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 2 Total-length: 188007 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 123772 Median-sequence-length: 123772 Max-sequence-length: 123772 Min-sequence-length: 64235

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 5 Total-length: 221450 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 48230 Median-sequence-length: 38630 Max-sequence-length: 65924 Min-sequence-length: 34189

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 2 Total-length: 86861 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 62015 Median-sequence-length: 62015 Max-sequence-length: 62015 Min-sequence-length: 24846

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 2 Total-length: 131288 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 78281 Median-sequence-length: 78281 Max-sequence-length: 78281 Min-sequence-length: 53007

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 2 Total-length: 67178 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33754 Median-sequence-length: 33754 Max-sequence-length: 33754 Min-sequence-length: 33424

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 5 Total-length: 256473 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 162279 Median-sequence-length: 27596 Max-sequence-length: 162279 Min-sequence-length: 17906

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 9 Total-length: 26190210 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 6678443 Median-sequence-length: 2434762 Max-sequence-length: 7084692 Min-sequence-length: 40584

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 4 Total-length: 27720797 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 8420658 Median-sequence-length: 8420658 Max-sequence-length: 12927604 Min-sequence-length: 933953

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 13 Total-length: 25222216 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 6598374 Median-sequence-length: 554111 Max-sequence-length: 8444572 Min-sequence-length: 64101

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 3 Total-length: 286540 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 149807 Median-sequence-length: 100042 Max-sequence-length: 149807 Min-sequence-length: 36691

Got message from job at time 07-05-2023 13:43:06: Job used more disk than requested. For CWL, consider increasing the outdirMin requirement, otherwise, consider increasing the disk requirement. Job files/for-job/kind-sanitize_fasta_header/instance-udykb0d3/cleanup/file-d54689ea9eeb4c919d106a4974f74f79/stream used 105.07% disk (292.0 KiB [299008B] used, 277.9 KiB [284578B] requested).
Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 1 Total-length: 90603 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 90603 Median-sequence-length: 90603 Max-sequence-length: 90603 Min-sequence-length: 90603

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 1 Total-length: 16659 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16659 Median-sequence-length: 16659 Max-sequence-length: 16659 Min-sequence-length: 16659

Got message from job at time 07-05-2023 13:43:06: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 57227415 Proportion-repeat-masked: 0.586975 ProportionNs: 0.586975 Total-Ns: 33591060 N50: 57227415 Median-sequence-length: 57227415 Max-sequence-length: 57227415 Min-sequence-length: 57227415

Got message from job at time 07-05-2023 13:43:06: Job used more disk than requested. For CWL, consider increasing the outdirMin requirement, otherwise, consider increasing the disk requirement. Job files/for-job/kind-sanitize_fasta_header/4/instance-t3kfn1gx/cleanup/file-cfb121eee897414f9c7b9ce1303c6424/stream used 126.58% disk (55.1 MiB [57810944B] used, 43.6 MiB [45673222B] requested).
Got message from job at time 07-05-2023 13:43:06: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 2197 Total-length: 11149569 Proportion-repeat-masked: 0.043972 ProportionNs: 0.043972 Total-Ns: 490270 N50: 67315 Median-sequence-length: 330 Max-sequence-length: 659519 Min-sequence-length: 1

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 2 Total-length: 285773 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 180804 Median-sequence-length: 180804 Max-sequence-length: 180804 Min-sequence-length: 104969

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 1 Total-length: 182296 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 182296 Median-sequence-length: 182296 Max-sequence-length: 182296 Min-sequence-length: 182296

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-sxdgnklu v1 with job batch system ID: 738 and disk: 115.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-d5nkrx3p v1 with job batch system ID: 739 and disk: 115.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-j95d136g v1 with job batch system ID: 740 and disk: 116.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7zh2z8ph v1 with job batch system ID: 741 and disk: 115.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-merdytnw v1 with job batch system ID: 742 and disk: 114.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-2wfyd62i v1 with job batch system ID: 743 and disk: 114.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-zmim5eck v1 with job batch system ID: 744 and disk: 116.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-nu9gotq3 v1 with job batch system ID: 745 and disk: 116.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-508k9r88 v1 with job batch system ID: 746 and disk: 114.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-5aa8gpk7 v1 with job batch system ID: 747 and disk: 116.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-rzcq1k1_ v1 with job batch system ID: 748 and disk: 112.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-1410j2b7 v1 with job batch system ID: 749 and disk: 116.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-vvvx72dz v1 with job batch system ID: 750 and disk: 115.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-euh7boc6 v1 with job batch system ID: 751 and disk: 115.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-0e7pqqo2 v1 with job batch system ID: 752 and disk: 116.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-r7zp3ldb v1 with job batch system ID: 753 and disk: 116.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 3 Total-length: 190434 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 125711 Median-sequence-length: 46394 Max-sequence-length: 125711 Min-sequence-length: 18329

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-hhb7cfkh v1 with job batch system ID: 754 and disk: 115.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-hdob0j47 v1 with job batch system ID: 755 and disk: 115.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-uq6864g4 v1 with job batch system ID: 756 and disk: 114.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/2/instance-z0j11gz8 v1 with job batch system ID: 757 and disk: 115.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-2qmakwzl v1 with job batch system ID: 758 and disk: 116.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-e0vbyf41 v1 with job batch system ID: 759 and disk: 123.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-eumgusko v1 with job batch system ID: 760 and disk: 116.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-idxbxj3c v1 with job batch system ID: 761 and disk: 124.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-inbrdrmb v1 with job batch system ID: 762 and disk: 115.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-lyp8rj60 v1 with job batch system ID: 763 and disk: 116.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-u3cayy0v v1 with job batch system ID: 764 and disk: 116.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-vfpkq_7s v1 with job batch system ID: 765 and disk: 117.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-eihzlf5s v1 with job batch system ID: 766 and disk: 114.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-zhdy2zre v1 with job batch system ID: 767 and disk: 115.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-ca7y5b92 v1 with job batch system ID: 768 and disk: 114.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 4 Total-length: 483003 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 122679 Median-sequence-length: 122679 Max-sequence-length: 192570 Min-sequence-length: 54233

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-gelevlpw v1 with job batch system ID: 769 and disk: 114.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-yoqrdl6h v1 with job batch system ID: 770 and disk: 114.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-g80juw41 v1 with job batch system ID: 771 and disk: 115.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-sn3elre6 v1 with job batch system ID: 772 and disk: 116.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-bihv6aq3 v1 with job batch system ID: 773 and disk: 115.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-wf2t5_l5 v1 with job batch system ID: 774 and disk: 113.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-0cdj4vxp v1 with job batch system ID: 775 and disk: 115.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-uwyd862p v1 with job batch system ID: 776 and disk: 112.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-wb_zfj98 v1 with job batch system ID: 777 and disk: 116.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 2 Total-length: 234443 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 217149 Median-sequence-length: 217149 Max-sequence-length: 217149 Min-sequence-length: 17294

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-du55chqc v1 with job batch system ID: 778 and disk: 116.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-4glbl6gv v1 with job batch system ID: 779 and disk: 116.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-2_zuyd49 v1 with job batch system ID: 780 and disk: 114.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-5yuzzpii v1 with job batch system ID: 781 and disk: 116.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-9gmlxhaj v1 with job batch system ID: 782 and disk: 116.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-5upxpqck v1 with job batch system ID: 783 and disk: 115.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-v__bpl05 v1 with job batch system ID: 784 and disk: 115.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7xglm6_3 v1 with job batch system ID: 785 and disk: 117.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-q_8hs4m5 v1 with job batch system ID: 786 and disk: 115.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-dl142oih v1 with job batch system ID: 787 and disk: 116.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-i13icq2m v1 with job batch system ID: 788 and disk: 117.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-07kv2leb v1 with job batch system ID: 789 and disk: 121.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-zweyr0fx v1 with job batch system ID: 790 and disk: 114.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 6 Total-length: 1623826 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 1379076 Median-sequence-length: 77854 Max-sequence-length: 1379076 Min-sequence-length: 10379

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-jm01he06 v1 with job batch system ID: 791 and disk: 113.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-a4ruv2az v1 with job batch system ID: 792 and disk: 116.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-cmjwa988 v1 with job batch system ID: 793 and disk: 115.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-p4zoka2m v1 with job batch system ID: 794 and disk: 115.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-o6mdkle4 v1 with job batch system ID: 795 and disk: 116.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-e1ke0tor v1 with job batch system ID: 796 and disk: 114.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-fqo2h547 v1 with job batch system ID: 797 and disk: 115.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-9q5qt4cu v1 with job batch system ID: 798 and disk: 116.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 4 Total-length: 1617064 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 1416375 Median-sequence-length: 108992 Max-sequence-length: 1416375 Min-sequence-length: 43847

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-grgtlx_s v1 with job batch system ID: 799 and disk: 115.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-f18iarg3 v1 with job batch system ID: 800 and disk: 116.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-e1p62bf5 v1 with job batch system ID: 801 and disk: 115.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-105_3qxt v1 with job batch system ID: 802 and disk: 116.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-29zkhxs1 v1 with job batch system ID: 803 and disk: 116.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-bhu1k16z v1 with job batch system ID: 804 and disk: 114.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-79plw9u3 v1 with job batch system ID: 805 and disk: 115.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-obbvvb4d v1 with job batch system ID: 806 and disk: 115.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-cnu3t48i v1 with job batch system ID: 807 and disk: 116.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-l0bdw6iy v1 with job batch system ID: 808 and disk: 116.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-6i2569qu v1 with job batch system ID: 809 and disk: 117.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1gup8p0s v1 with job batch system ID: 810 and disk: 115.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-zj8apqqv v1 with job batch system ID: 811 and disk: 116.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-9jxqm0hr v1 with job batch system ID: 812 and disk: 116.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 9 Total-length: 2101413 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 1379076 Median-sequence-length: 105058 Max-sequence-length: 1379076 Min-sequence-length: 27428

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-68yokh5u v1 with job batch system ID: 813 and disk: 116.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-dmtnvtby v1 with job batch system ID: 814 and disk: 114.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-834u6vrs v1 with job batch system ID: 815 and disk: 115.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-n1gwchpm v1 with job batch system ID: 816 and disk: 115.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-zxy7426c v1 with job batch system ID: 817 and disk: 116.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-oiy99z7g v1 with job batch system ID: 818 and disk: 116.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-xvy8n2tp v1 with job batch system ID: 819 and disk: 116.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-ue0vs9lz v1 with job batch system ID: 820 and disk: 114.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-mj2mm6qq v1 with job batch system ID: 821 and disk: 115.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 2 Total-length: 85077 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44292 Median-sequence-length: 44292 Max-sequence-length: 44292 Min-sequence-length: 40785

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-g6iu30q8 v1 with job batch system ID: 822 and disk: 116.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-wezqxkzf v1 with job batch system ID: 823 and disk: 116.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-cak6j35d v1 with job batch system ID: 824 and disk: 114.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-wh5_apyd v1 with job batch system ID: 825 and disk: 114.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-cwe6__c2 v1 with job batch system ID: 826 and disk: 117.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-n235o17m v1 with job batch system ID: 827 and disk: 116.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-z16_wg5r v1 with job batch system ID: 828 and disk: 114.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 8 Total-length: 704118 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 104137 Median-sequence-length: 84379 Max-sequence-length: 192972 Min-sequence-length: 40970

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 2 Total-length: 1440943 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 1405433 Median-sequence-length: 1405433 Max-sequence-length: 1405433 Min-sequence-length: 35510

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 1 Total-length: 26454 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26454 Median-sequence-length: 26454 Max-sequence-length: 26454 Min-sequence-length: 26454

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 3 Total-length: 254054 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 151790 Median-sequence-length: 58610 Max-sequence-length: 151790 Min-sequence-length: 43654

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 1 Total-length: 1455073 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 1455073 Median-sequence-length: 1455073 Max-sequence-length: 1455073 Min-sequence-length: 1455073

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 4 Total-length: 139030 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39225 Median-sequence-length: 39225 Max-sequence-length: 45034 Min-sequence-length: 27120

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 9 Total-length: 22417069 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 4159512 Median-sequence-length: 3558646 Max-sequence-length: 4535799 Min-sequence-length: 173220

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 7 Total-length: 24284910 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 5959655 Median-sequence-length: 3126663 Max-sequence-length: 8358854 Min-sequence-length: 128624

Got message from job at time 07-05-2023 13:43:06: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 57227415 Proportion-repeat-masked: 0.586975 ProportionNs: 0.586975 Total-Ns: 33591060 N50: 57227415 Median-sequence-length: 57227415 Max-sequence-length: 57227415 Min-sequence-length: 57227415

Got message from job at time 07-05-2023 13:43:06: Job used more disk than requested. For CWL, consider increasing the outdirMin requirement, otherwise, consider increasing the disk requirement. Job files/for-job/kind-sanitize_fasta_header/instance-12mem4cv/cleanup/file-430877fe95104914a661a09bda337673/stream used 126.58% disk (55.1 MiB [57810944B] used, 43.6 MiB [45673131B] requested).
Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 6 Total-length: 25775447 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 4209224 Median-sequence-length: 4209224 Max-sequence-length: 8368882 Min-sequence-length: 793902

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 11 Total-length: 22713083 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 6682291 Median-sequence-length: 377298 Max-sequence-length: 8155788 Min-sequence-length: 64216

Got message from job at time 07-05-2023 13:43:06: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 1 Total-length: 16569 Proportion-repeat-masked: 0.000060 ProportionNs: 0.000060 Total-Ns: 1 N50: 16569 Median-sequence-length: 16569 Max-sequence-length: 16569 Min-sequence-length: 16569

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 11 Total-length: 25710930 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 6702170 Median-sequence-length: 1316235 Max-sequence-length: 7743252 Min-sequence-length: 61566

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 7 Total-length: 27805011 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 6143220 Median-sequence-length: 4326891 Max-sequence-length: 8502431 Min-sequence-length: 240141

Got message from job at time 07-05-2023 13:43:06: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 7 Total-length: 27931534 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 8079794 Median-sequence-length: 3033700 Max-sequence-length: 8881715 Min-sequence-length: 278203

Got message from job at time 07-05-2023 13:43:07: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 7 Total-length: 25694555 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 7120004 Median-sequence-length: 2202870 Max-sequence-length: 7770243 Min-sequence-length: 101463

Got message from job at time 07-05-2023 13:43:07: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 1770 Total-length: 58589737 Proportion-repeat-masked: 0.571620 ProportionNs: 0.571620 Total-Ns: 33491060 N50: 30130091 Median-sequence-length: 230 Max-sequence-length: 30130091 Min-sequence-length: 1

Got message from job at time 07-05-2023 13:43:07: Job used more disk than requested. For CWL, consider increasing the outdirMin requirement, otherwise, consider increasing the disk requirement. Job files/for-job/kind-sanitize_fasta_header/g/instance-6qbhner2/cleanup/file-c006aaaa922b411285f4199d86af743f/stream used 121.91% disk (56.5 MiB [59228160B] used, 46.3 MiB [48581715B] requested).
Got message from job at time 07-05-2023 13:43:07: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 7 Total-length: 23758816 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 4592902 Median-sequence-length: 4099794 Max-sequence-length: 8659117 Min-sequence-length: 151932

Got message from job at time 07-05-2023 13:43:07: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 26 Total-length: 24510677 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 1908934 Median-sequence-length: 710298 Max-sequence-length: 2952912 Min-sequence-length: 35894

Got message from job at time 07-05-2023 13:43:07: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 5 Total-length: 28311294 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 6570700 Median-sequence-length: 5491480 Max-sequence-length: 8585374 Min-sequence-length: 3516660

Got message from job at time 07-05-2023 13:43:07: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 3 Total-length: 22725902 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17250043 Median-sequence-length: 5011777 Max-sequence-length: 17250043 Min-sequence-length: 464082

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-og0u5c_m v1 with job batch system ID: 829 and disk: 72.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:07: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 1 Total-length: 16570 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16570 Median-sequence-length: 16570 Max-sequence-length: 16570 Min-sequence-length: 16570

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-bpw00w9l v1 with job batch system ID: 830 and disk: 65.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-_bcxrfde v1 with job batch system ID: 831 and disk: 75.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-68gmw3jk v1 with job batch system ID: 832 and disk: 66.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:07: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 1 Total-length: 1601699 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 1601699 Median-sequence-length: 1601699 Max-sequence-length: 1601699 Min-sequence-length: 1601699

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-knsr3dko v1 with job batch system ID: 833 and disk: 64.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-xqbz8aua v1 with job batch system ID: 834 and disk: 73.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-40nhgaek v1 with job batch system ID: 835 and disk: 67.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-fri1p7ha v1 with job batch system ID: 836 and disk: 73.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-r32crrlc v1 with job batch system ID: 837 and disk: 64.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-b7aqlfyt v1 with job batch system ID: 838 and disk: 65.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-lltzaxji v1 with job batch system ID: 839 and disk: 65.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:07: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 1 Total-length: 16568 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16568 Median-sequence-length: 16568 Max-sequence-length: 16568 Min-sequence-length: 16568

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-wh1g91d9 v1 with job batch system ID: 840 and disk: 72.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-dn4rod3l v1 with job batch system ID: 841 and disk: 71.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-kstk8_c9 v1 with job batch system ID: 842 and disk: 65.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-7lue4cfq v1 with job batch system ID: 843 and disk: 72.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-1350fj1t v1 with job batch system ID: 844 and disk: 65.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-p5av_ctt v1 with job batch system ID: 845 and disk: 74.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:07: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 9 Total-length: 22935075 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12742626 Median-sequence-length: 550786 Max-sequence-length: 12742626 Min-sequence-length: 316066

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-7_3t98p3 v1 with job batch system ID: 846 and disk: 72.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-47i21anu v1 with job batch system ID: 847 and disk: 67.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-fdgbfnck v1 with job batch system ID: 848 and disk: 65.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-pdijljqc v1 with job batch system ID: 849 and disk: 76.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-3rzot7fg v1 with job batch system ID: 850 and disk: 58.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-xurci66i v1 with job batch system ID: 851 and disk: 65.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-q7j4fntb v1 with job batch system ID: 852 and disk: 67.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:07: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 1 Total-length: 16571 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16571 Median-sequence-length: 16571 Max-sequence-length: 16571 Min-sequence-length: 16571

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-qmz4ysl1 v1 with job batch system ID: 853 and disk: 66.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7xcdq608 v1 with job batch system ID: 854 and disk: 65.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-qk1t9rmv v1 with job batch system ID: 855 and disk: 68.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-fraxs4ok v1 with job batch system ID: 856 and disk: 64.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-7o2uo8js v1 with job batch system ID: 857 and disk: 64.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/2/instance-rgfk8i51 v1 with job batch system ID: 858 and disk: 77.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-2j5xl421 v1 with job batch system ID: 859 and disk: 77.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:43:07: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 6 Total-length: 25126164 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 7244330 Median-sequence-length: 4606345 Max-sequence-length: 7829890 Min-sequence-length: 742793

Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-gt22mnik v1 with job batch system ID: 860 and disk: 64.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-2r2krpns v1 with job batch system ID: 861 and disk: 73.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-tni4t06j v1 with job batch system ID: 862 and disk: 82.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-6kz0gwel v1 with job batch system ID: 863 and disk: 66.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-xjt2dzap v1 with job batch system ID: 864 and disk: 64.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1h9ukqb1 v1 with job batch system ID: 865 and disk: 74.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-hmzmqi5w v1 with job batch system ID: 866 and disk: 64.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-vwg32iuv v1 with job batch system ID: 867 and disk: 65.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ofobxvx4 v1 with job batch system ID: 868 and disk: 66.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-6gc0s83h v1 with job batch system ID: 869 and disk: 65.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-u3ap2uo6 v1 with job batch system ID: 870 and disk: 65.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-j1dnl9t8 v1 with job batch system ID: 871 and disk: 74.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-8w8me8tf v1 with job batch system ID: 872 and disk: 66.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-sq6j3v47 v1 with job batch system ID: 873 and disk: 69.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-yk5lbigf v1 with job batch system ID: 874 and disk: 65.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-j1ywyyj5 v1 with job batch system ID: 875 and disk: 67.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-op3lc8y2 v1 with job batch system ID: 876 and disk: 65.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-a58prj5z v1 with job batch system ID: 877 and disk: 65.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-epsu0e_e v1 with job batch system ID: 878 and disk: 77.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-5pd_4bc5 v1 with job batch system ID: 879 and disk: 66.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-xr71upkw v1 with job batch system ID: 880 and disk: 65.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-ff6gs5kw v1 with job batch system ID: 881 and disk: 73.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-3igauzvi v1 with job batch system ID: 882 and disk: 66.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-9_oxa1zb v1 with job batch system ID: 883 and disk: 64.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-slsi6sky v1 with job batch system ID: 884 and disk: 66.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-pxie2j6n v1 with job batch system ID: 885 and disk: 65.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-zzinc_e9 v1 with job batch system ID: 886 and disk: 66.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-4v3jhcz0 v1 with job batch system ID: 887 and disk: 66.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-yw50b6cd v1 with job batch system ID: 888 and disk: 76.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-x50agjna v1 with job batch system ID: 889 and disk: 64.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-9hc_d9go v1 with job batch system ID: 890 and disk: 71.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4aa48pj_ v1 with job batch system ID: 891 and disk: 64.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-8scaw8gy v1 with job batch system ID: 892 and disk: 67.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-zm4pavoi v1 with job batch system ID: 893 and disk: 74.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-f10mublg v1 with job batch system ID: 894 and disk: 65.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-944oe051 v1 with job batch system ID: 895 and disk: 72.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7q3i9uwm v1 with job batch system ID: 896 and disk: 74.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-jbfsv0dd v1 with job batch system ID: 897 and disk: 73.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-yff_umx1 v1 with job batch system ID: 898 and disk: 75.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-_trmo5kz v1 with job batch system ID: 899 and disk: 67.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-oiukfpvv v1 with job batch system ID: 900 and disk: 66.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-jk3ss1nm v1 with job batch system ID: 901 and disk: 66.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-a56xwy0r v1 with job batch system ID: 902 and disk: 67.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-bwkaogsa v1 with job batch system ID: 903 and disk: 67.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-baqsnwcx v1 with job batch system ID: 904 and disk: 65.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-5whjct_0 v1 with job batch system ID: 905 and disk: 66.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-dz09dm_5 v1 with job batch system ID: 906 and disk: 65.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-04r5r__j v1 with job batch system ID: 907 and disk: 65.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-_vernyk7 v1 with job batch system ID: 908 and disk: 67.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4_ho7ahp v1 with job batch system ID: 909 and disk: 65.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-zx6b580j v1 with job batch system ID: 910 and disk: 65.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-jwvrye5z v1 with job batch system ID: 911 and disk: 65.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-4qprxrld v1 with job batch system ID: 912 and disk: 64.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-8ggc3e06 v1 with job batch system ID: 913 and disk: 70.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-f_kb95hj v1 with job batch system ID: 914 and disk: 65.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-fljwzbj5 v1 with job batch system ID: 915 and disk: 74.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-q5p9_tw8 v1 with job batch system ID: 916 and disk: 74.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-3ar2vfad v1 with job batch system ID: 917 and disk: 65.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-y_kmw99c v1 with job batch system ID: 918 and disk: 70.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-37ztxjv0 v1 with job batch system ID: 919 and disk: 66.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-2ygytbuf v1 with job batch system ID: 920 and disk: 145.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-t_oultsc v1 with job batch system ID: 921 and disk: 147.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-eb16qxe_ v1 with job batch system ID: 922 and disk: 147.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-nrva66to v1 with job batch system ID: 923 and disk: 145.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-j49kj1by v1 with job batch system ID: 924 and disk: 146.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-odybh7fb v1 with job batch system ID: 925 and disk: 146.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-bpi6a27c v1 with job batch system ID: 926 and disk: 146.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-y371dq85 v1 with job batch system ID: 927 and disk: 146.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-jho5_jf4 v1 with job batch system ID: 928 and disk: 145.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-zc1oee3u v1 with job batch system ID: 929 and disk: 145.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-y2x0_8cf v1 with job batch system ID: 930 and disk: 143.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ib59krz6 v1 with job batch system ID: 931 and disk: 146.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-okbwis6g v1 with job batch system ID: 932 and disk: 146.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-ddraa9gn v1 with job batch system ID: 933 and disk: 146.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-eg0gxtu5 v1 with job batch system ID: 934 and disk: 146.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-i5yei87h v1 with job batch system ID: 935 and disk: 145.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-z1t_cxrl v1 with job batch system ID: 936 and disk: 146.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-yqbwnf6v v1 with job batch system ID: 937 and disk: 144.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-2_ysi3oi v1 with job batch system ID: 938 and disk: 147.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-8itqd1mz v1 with job batch system ID: 939 and disk: 150.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-3xirnsi_ v1 with job batch system ID: 940 and disk: 146.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-4laaxco5 v1 with job batch system ID: 941 and disk: 146.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-xwy3wn64 v1 with job batch system ID: 942 and disk: 146.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-8dlh4hr_ v1 with job batch system ID: 943 and disk: 146.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-7wej7n9b v1 with job batch system ID: 944 and disk: 145.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_240qmf6 v1 with job batch system ID: 945 and disk: 147.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/2/instance-eiyaq5q6 v1 with job batch system ID: 946 and disk: 147.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-k8muzily v1 with job batch system ID: 947 and disk: 146.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-nzdz20pv v1 with job batch system ID: 948 and disk: 146.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-qoghki8y v1 with job batch system ID: 949 and disk: 146.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-uti20byt v1 with job batch system ID: 950 and disk: 142.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-9ynge4az v1 with job batch system ID: 951 and disk: 146.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-zenms65d v1 with job batch system ID: 952 and disk: 148.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-n469znhs v1 with job batch system ID: 953 and disk: 146.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-ren40lhe v1 with job batch system ID: 954 and disk: 145.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-g1odz3hz v1 with job batch system ID: 955 and disk: 148.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-hll8n6jc v1 with job batch system ID: 956 and disk: 146.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-sviophun v1 with job batch system ID: 957 and disk: 147.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-7rm1wn6a v1 with job batch system ID: 958 and disk: 146.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-luddtq99 v1 with job batch system ID: 959 and disk: 146.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-xzjh35q8 v1 with job batch system ID: 960 and disk: 154.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-qgs22wgt v1 with job batch system ID: 961 and disk: 146.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-0nyydaw0 v1 with job batch system ID: 962 and disk: 145.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-bj3ebu6b v1 with job batch system ID: 963 and disk: 146.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-5adj140l v1 with job batch system ID: 964 and disk: 148.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-y0bw32u8 v1 with job batch system ID: 965 and disk: 145.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-el_kl9tt v1 with job batch system ID: 966 and disk: 146.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-f4j_zl0q v1 with job batch system ID: 967 and disk: 146.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-d470tqfg v1 with job batch system ID: 968 and disk: 146.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-2fohmha8 v1 with job batch system ID: 969 and disk: 145.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-muqgaw12 v1 with job batch system ID: 970 and disk: 146.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-6srx0tib v1 with job batch system ID: 971 and disk: 147.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-9u3t4hfe v1 with job batch system ID: 972 and disk: 145.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-mjlcszhs v1 with job batch system ID: 973 and disk: 145.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-wxoj15fa v1 with job batch system ID: 974 and disk: 146.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-qcrt4k56 v1 with job batch system ID: 975 and disk: 147.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-dp16zbdp v1 with job batch system ID: 976 and disk: 146.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-f6fxsxj8 v1 with job batch system ID: 977 and disk: 147.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-rflld53w v1 with job batch system ID: 978 and disk: 155.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-9_jyxisa v1 with job batch system ID: 979 and disk: 148.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-c7zvtl13 v1 with job batch system ID: 980 and disk: 147.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-42jn1cbh v1 with job batch system ID: 981 and disk: 147.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-6uhzfdgi v1 with job batch system ID: 982 and disk: 146.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-5iuz0p2t v1 with job batch system ID: 983 and disk: 147.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-0vmu8nh8 v1 with job batch system ID: 984 and disk: 145.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-5fskp_rx v1 with job batch system ID: 985 and disk: 145.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7qo0fp1p v1 with job batch system ID: 986 and disk: 150.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-cbkdk1nv v1 with job batch system ID: 987 and disk: 147.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-vkizwyh8 v1 with job batch system ID: 988 and disk: 146.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-l_x3tn_z v1 with job batch system ID: 989 and disk: 145.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-mpb1uwaa v1 with job batch system ID: 990 and disk: 147.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-gpgllgmy v1 with job batch system ID: 991 and disk: 146.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-ao5gaqvy v1 with job batch system ID: 992 and disk: 146.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-d_osu_ez v1 with job batch system ID: 993 and disk: 146.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-rph6yjka v1 with job batch system ID: 994 and disk: 144.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-iu3alg_7 v1 with job batch system ID: 995 and disk: 145.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-57gkjwm6 v1 with job batch system ID: 996 and disk: 146.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-t0nm3f2r v1 with job batch system ID: 997 and disk: 146.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-ludhgaet v1 with job batch system ID: 998 and disk: 149.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-co1n5gd1 v1 with job batch system ID: 999 and disk: 145.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-d2wn7_2m v1 with job batch system ID: 1000 and disk: 145.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-qwxskii8 v1 with job batch system ID: 1001 and disk: 145.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/2/instance-cze8iy2j v1 with job batch system ID: 1002 and disk: 147.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-_tf2tn_0 v1 with job batch system ID: 1003 and disk: 146.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-bkr_dpgn v1 with job batch system ID: 1004 and disk: 146.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-52t9r_rw v1 with job batch system ID: 1005 and disk: 145.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-zb493du7 v1 with job batch system ID: 1006 and disk: 146.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-r0gg3bco v1 with job batch system ID: 1007 and disk: 147.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-s2b9ku88 v1 with job batch system ID: 1008 and disk: 147.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-sc1_12bp v1 with job batch system ID: 1009 and disk: 145.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-evhz24ul v1 with job batch system ID: 1010 and disk: 145.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-57jgvl7e v1 with job batch system ID: 1011 and disk: 264.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-7ljekdjf v1 with job batch system ID: 1012 and disk: 263.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-o4qd1wus v1 with job batch system ID: 1013 and disk: 264.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-1zogtmc6 v1 with job batch system ID: 1014 and disk: 264.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/2/instance-drt0vkq1 v1 with job batch system ID: 1015 and disk: 264.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-9w54apxi v1 with job batch system ID: 1016 and disk: 264.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-hjle_t15 v1 with job batch system ID: 1017 and disk: 264.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-j6uvbpkx v1 with job batch system ID: 1018 and disk: 264.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/2/instance-9cj4s3fr v1 with job batch system ID: 1019 and disk: 262.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-eckdjmj4 v1 with job batch system ID: 1020 and disk: 265.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-a93ae0_2 v1 with job batch system ID: 1021 and disk: 262.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-ueq046cb v1 with job batch system ID: 1022 and disk: 261.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-xzm3i41b v1 with job batch system ID: 1023 and disk: 264.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-peig05cj v1 with job batch system ID: 1024 and disk: 262.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-mpq_ml2a v1 with job batch system ID: 1025 and disk: 263.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-ojqsol78 v1 with job batch system ID: 1026 and disk: 265.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-rsddob51 v1 with job batch system ID: 1027 and disk: 264.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-5bxa6wyz v1 with job batch system ID: 1028 and disk: 263.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-tp_mk19l v1 with job batch system ID: 1029 and disk: 263.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-198d_dra v1 with job batch system ID: 1030 and disk: 263.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-3ff1n3_k v1 with job batch system ID: 1031 and disk: 262.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-pq1xf8ru v1 with job batch system ID: 1032 and disk: 263.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-pn79zeg_ v1 with job batch system ID: 1033 and disk: 264.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-52vo7tx1 v1 with job batch system ID: 1034 and disk: 264.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-1prccpwg v1 with job batch system ID: 1035 and disk: 264.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-n3z5wvim v1 with job batch system ID: 1036 and disk: 263.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-oaeg2t4j v1 with job batch system ID: 1037 and disk: 265.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-l491wcna v1 with job batch system ID: 1038 and disk: 264.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-pgpf6_n6 v1 with job batch system ID: 1039 and disk: 263.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-jsq4_e6y v1 with job batch system ID: 1040 and disk: 265.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-l7avslx3 v1 with job batch system ID: 1041 and disk: 265.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-r9ltqh76 v1 with job batch system ID: 1042 and disk: 264.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-pea7rtyx v1 with job batch system ID: 1043 and disk: 263.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-dm1_l45v v1 with job batch system ID: 1044 and disk: 264.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-obj6pzyi v1 with job batch system ID: 1045 and disk: 264.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-aojbeuep v1 with job batch system ID: 1046 and disk: 263.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-9gmnlrn6 v1 with job batch system ID: 1047 and disk: 262.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-4_vv9m07 v1 with job batch system ID: 1048 and disk: 264.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-80iwun2b v1 with job batch system ID: 1049 and disk: 262.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-9wtd8wfn v1 with job batch system ID: 1050 and disk: 266.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-vy3a090b v1 with job batch system ID: 1051 and disk: 265.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-ckl6c2h3 v1 with job batch system ID: 1052 and disk: 264.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-gyfew9ek v1 with job batch system ID: 1053 and disk: 264.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-_ylkxw24 v1 with job batch system ID: 1054 and disk: 263.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-yjy93eoy v1 with job batch system ID: 1055 and disk: 264.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-ps6bcoo7 v1 with job batch system ID: 1056 and disk: 269.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-359dqp_w v1 with job batch system ID: 1057 and disk: 262.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-thrpj0fc v1 with job batch system ID: 1058 and disk: 265.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-iiewguuv v1 with job batch system ID: 1059 and disk: 264.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-bgx1acy2 v1 with job batch system ID: 1060 and disk: 262.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-cyx5y22_ v1 with job batch system ID: 1061 and disk: 264.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-kqt2grk7 v1 with job batch system ID: 1062 and disk: 264.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-_kecxeum v1 with job batch system ID: 1063 and disk: 266.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ezw78q9s v1 with job batch system ID: 1064 and disk: 265.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-9_3hhmlr v1 with job batch system ID: 1065 and disk: 263.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-x9m4myq2 v1 with job batch system ID: 1066 and disk: 264.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-7ftpvujk v1 with job batch system ID: 1067 and disk: 265.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-91i18tph v1 with job batch system ID: 1068 and disk: 262.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-kg40hhx1 v1 with job batch system ID: 1069 and disk: 264.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-ygqo8lzk v1 with job batch system ID: 1070 and disk: 263.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-ehktlmfz v1 with job batch system ID: 1071 and disk: 263.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-t42g4idk v1 with job batch system ID: 1072 and disk: 264.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-sjld9bns v1 with job batch system ID: 1073 and disk: 262.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-yalryen9 v1 with job batch system ID: 1074 and disk: 261.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-1kw7h78u v1 with job batch system ID: 1075 and disk: 264.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-z1tlxhqs v1 with job batch system ID: 1076 and disk: 264.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-4cqzrfz9 v1 with job batch system ID: 1077 and disk: 260.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-ai9ixtvh v1 with job batch system ID: 1078 and disk: 263.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-80ob218g v1 with job batch system ID: 1079 and disk: 264.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-xb7762ag v1 with job batch system ID: 1080 and disk: 262.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-6wp4vz9o v1 with job batch system ID: 1081 and disk: 267.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ktdikggd v1 with job batch system ID: 1082 and disk: 263.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-jfscomam v1 with job batch system ID: 1083 and disk: 263.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-og9dsyx5 v1 with job batch system ID: 1084 and disk: 264.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-fr9zivz5 v1 with job batch system ID: 1085 and disk: 276.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-6e4s0_d4 v1 with job batch system ID: 1086 and disk: 264.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-opj6trnj v1 with job batch system ID: 1087 and disk: 265.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-xs4ul1ew v1 with job batch system ID: 1088 and disk: 266.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-o_9kd7ru v1 with job batch system ID: 1089 and disk: 266.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1kfi6ead v1 with job batch system ID: 1090 and disk: 264.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-0scbfmrd v1 with job batch system ID: 1091 and disk: 263.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-v38btppo v1 with job batch system ID: 1092 and disk: 263.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7qfsy8ij v1 with job batch system ID: 1093 and disk: 262.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-d8d11m12 v1 with job batch system ID: 1094 and disk: 264.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-d__h3bca v1 with job batch system ID: 1095 and disk: 264.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-m5tjralc v1 with job batch system ID: 1096 and disk: 265.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-533lkt5p v1 with job batch system ID: 1097 and disk: 263.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-adcgrh3o v1 with job batch system ID: 1098 and disk: 265.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-k06smjf5 v1 with job batch system ID: 1099 and disk: 264.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1595dosm v1 with job batch system ID: 1100 and disk: 263.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-7tsldb72 v1 with job batch system ID: 1101 and disk: 264.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-o1yngmfy v1 with job batch system ID: 1102 and disk: 244.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-1dl43a09 v1 with job batch system ID: 1103 and disk: 242.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-newwa477 v1 with job batch system ID: 1104 and disk: 243.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-6yqq9bkj v1 with job batch system ID: 1105 and disk: 242.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-_j3jp0x4 v1 with job batch system ID: 1106 and disk: 242.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-qjm66tb0 v1 with job batch system ID: 1107 and disk: 242.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-bex2pebh v1 with job batch system ID: 1108 and disk: 243.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-9anooo4m v1 with job batch system ID: 1109 and disk: 242.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-sxf8ez_s v1 with job batch system ID: 1110 and disk: 242.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-uy7yml1m v1 with job batch system ID: 1111 and disk: 242.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-u1mx_6zl v1 with job batch system ID: 1112 and disk: 243.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-wnmeofth v1 with job batch system ID: 1113 and disk: 243.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-fjr_nwrn v1 with job batch system ID: 1114 and disk: 243.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-9tia108c v1 with job batch system ID: 1115 and disk: 243.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-v2xw5ozz v1 with job batch system ID: 1116 and disk: 242.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-ytljz3dg v1 with job batch system ID: 1117 and disk: 243.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-ov85f1hi v1 with job batch system ID: 1118 and disk: 242.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-uihiw3ba v1 with job batch system ID: 1119 and disk: 242.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-uctqg9xu v1 with job batch system ID: 1120 and disk: 242.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-0offtcqz v1 with job batch system ID: 1121 and disk: 243.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-kc9b4lmg v1 with job batch system ID: 1122 and disk: 243.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-9olnvrfu v1 with job batch system ID: 1123 and disk: 242.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-qjdw8ypi v1 with job batch system ID: 1124 and disk: 243.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-4wmclaj8 v1 with job batch system ID: 1125 and disk: 241.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-qiwpyuiy v1 with job batch system ID: 1126 and disk: 243.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-gk5s44ng v1 with job batch system ID: 1127 and disk: 246.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-eyjefrx7 v1 with job batch system ID: 1128 and disk: 243.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-7xpueb7o v1 with job batch system ID: 1129 and disk: 244.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-881r2bag v1 with job batch system ID: 1130 and disk: 242.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-rhrnp1sb v1 with job batch system ID: 1131 and disk: 243.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-xd_07reu v1 with job batch system ID: 1132 and disk: 242.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-01nm0o0q v1 with job batch system ID: 1133 and disk: 242.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-8oawp9xc v1 with job batch system ID: 1134 and disk: 241.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-wkllbvq8 v1 with job batch system ID: 1135 and disk: 244.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-68tu1akc v1 with job batch system ID: 1136 and disk: 240.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-aoqn727n v1 with job batch system ID: 1137 and disk: 242.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-vwugxrj7 v1 with job batch system ID: 1138 and disk: 243.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-p4dc40zv v1 with job batch system ID: 1139 and disk: 245.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-b0p3du9h v1 with job batch system ID: 1140 and disk: 248.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-frjl7o4p v1 with job batch system ID: 1141 and disk: 240.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-3fz_uqb5 v1 with job batch system ID: 1142 and disk: 242.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-zaa4f5n8 v1 with job batch system ID: 1143 and disk: 243.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-rmee8qaq v1 with job batch system ID: 1144 and disk: 242.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-amekyax4 v1 with job batch system ID: 1145 and disk: 243.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-djtsjfs4 v1 with job batch system ID: 1146 and disk: 242.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-y9u4rpjs v1 with job batch system ID: 1147 and disk: 242.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-xpng_ti3 v1 with job batch system ID: 1148 and disk: 244.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-fb7kqt91 v1 with job batch system ID: 1149 and disk: 242.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-1kemx4ep v1 with job batch system ID: 1150 and disk: 242.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-jb_kun6a v1 with job batch system ID: 1151 and disk: 244.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-eq56ijdq v1 with job batch system ID: 1152 and disk: 242.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-_1dmiv1w v1 with job batch system ID: 1153 and disk: 245.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-90mxr0hp v1 with job batch system ID: 1154 and disk: 242.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-5udn795x v1 with job batch system ID: 1155 and disk: 243.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-cw_nx7i3 v1 with job batch system ID: 1156 and disk: 243.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-xh5dxyju v1 with job batch system ID: 1157 and disk: 242.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-ocj0w6u1 v1 with job batch system ID: 1158 and disk: 244.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-be8yfptq v1 with job batch system ID: 1159 and disk: 242.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-g1o32ztb v1 with job batch system ID: 1160 and disk: 242.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4l8tw07i v1 with job batch system ID: 1161 and disk: 243.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-r927a04y v1 with job batch system ID: 1162 and disk: 242.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-93zxn0xi v1 with job batch system ID: 1163 and disk: 242.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-3k6fhdjd v1 with job batch system ID: 1164 and disk: 251.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-4so9d60g v1 with job batch system ID: 1165 and disk: 242.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-bssslp3n v1 with job batch system ID: 1166 and disk: 240.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-kay4lo78 v1 with job batch system ID: 1167 and disk: 246.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-plegl_z2 v1 with job batch system ID: 1168 and disk: 243.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-v2b_pivf v1 with job batch system ID: 1169 and disk: 242.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-_inx1bq6 v1 with job batch system ID: 1170 and disk: 243.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-gcd35lde v1 with job batch system ID: 1171 and disk: 242.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-tnyt2m91 v1 with job batch system ID: 1172 and disk: 244.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-cbtzn4fh v1 with job batch system ID: 1173 and disk: 242.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-5y43ebjm v1 with job batch system ID: 1174 and disk: 242.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-dgfa5t3o v1 with job batch system ID: 1175 and disk: 243.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-w68tcl_k v1 with job batch system ID: 1176 and disk: 242.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-ulxp_gfx v1 with job batch system ID: 1177 and disk: 244.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-q1nrftys v1 with job batch system ID: 1178 and disk: 243.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-9o0juhe1 v1 with job batch system ID: 1179 and disk: 243.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-wck1zp5b v1 with job batch system ID: 1180 and disk: 242.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-yrxg7gn8 v1 with job batch system ID: 1181 and disk: 244.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-i2ni0x_7 v1 with job batch system ID: 1182 and disk: 243.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-yaj5nahf v1 with job batch system ID: 1183 and disk: 242.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-ngsrvo67 v1 with job batch system ID: 1184 and disk: 243.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-_vlzt5qq v1 with job batch system ID: 1185 and disk: 242.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-l54_qie2 v1 with job batch system ID: 1186 and disk: 244.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-p9vm48jb v1 with job batch system ID: 1187 and disk: 242.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-8gtzl_rc v1 with job batch system ID: 1188 and disk: 244.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-xgxv72eb v1 with job batch system ID: 1189 and disk: 242.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-_1pkw526 v1 with job batch system ID: 1190 and disk: 243.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-yzyh3zzr v1 with job batch system ID: 1191 and disk: 242.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-szk6ro3r v1 with job batch system ID: 1192 and disk: 242.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-uk_tn_2u v1 with job batch system ID: 1193 and disk: 222.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-_at3g_bh v1 with job batch system ID: 1194 and disk: 234.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-3d5ju3b1 v1 with job batch system ID: 1195 and disk: 229.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-n33gjzzl v1 with job batch system ID: 1196 and disk: 234.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-n72n2sej v1 with job batch system ID: 1197 and disk: 224.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-reqao0uq v1 with job batch system ID: 1198 and disk: 230.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-sgu7y9n1 v1 with job batch system ID: 1199 and disk: 208.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ic53t6f2 v1 with job batch system ID: 1200 and disk: 220.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-qvkdbtc4 v1 with job batch system ID: 1201 and disk: 232.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-hx7bprc4 v1 with job batch system ID: 1202 and disk: 225.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-brs8_cdp v1 with job batch system ID: 1203 and disk: 238.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-bu3e5aqn v1 with job batch system ID: 1204 and disk: 232.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-w6lsmd5b v1 with job batch system ID: 1205 and disk: 226.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-thouyeov v1 with job batch system ID: 1206 and disk: 235.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-lld0lmbp v1 with job batch system ID: 1207 and disk: 237.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-quh72_4g v1 with job batch system ID: 1208 and disk: 237.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-w4xbms8l v1 with job batch system ID: 1209 and disk: 230.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-lny0dvek v1 with job batch system ID: 1210 and disk: 233.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-o199oa8j v1 with job batch system ID: 1211 and disk: 234.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-u56e5hwu v1 with job batch system ID: 1212 and disk: 231.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-qaowm175 v1 with job batch system ID: 1213 and disk: 217.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-cut2_d4n v1 with job batch system ID: 1214 and disk: 200.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-96cai8w7 v1 with job batch system ID: 1215 and disk: 222.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/2/instance-bsvint7k v1 with job batch system ID: 1216 and disk: 225.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-xemjtbew v1 with job batch system ID: 1217 and disk: 235.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-4iov10af v1 with job batch system ID: 1218 and disk: 235.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-2cliry_8 v1 with job batch system ID: 1219 and disk: 233.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-uhoa5bph v1 with job batch system ID: 1220 and disk: 232.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-vfvu18p9 v1 with job batch system ID: 1221 and disk: 205.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-n5gdjtl2 v1 with job batch system ID: 1222 and disk: 247.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/2/instance-cv6cb8ym v1 with job batch system ID: 1223 and disk: 214.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-dijpqir2 v1 with job batch system ID: 1224 and disk: 234.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-8175587k v1 with job batch system ID: 1225 and disk: 239.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-_tc398c6 v1 with job batch system ID: 1226 and disk: 232.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-_09iv96k v1 with job batch system ID: 1227 and disk: 232.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-9gqzwpxd v1 with job batch system ID: 1228 and disk: 216.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-wtg9zczm v1 with job batch system ID: 1229 and disk: 239.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-16f720v0 v1 with job batch system ID: 1230 and disk: 232.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-16tdn4kf v1 with job batch system ID: 1231 and disk: 213.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-v3rfk3h3 v1 with job batch system ID: 1232 and disk: 233.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-q80pjlpl v1 with job batch system ID: 1233 and disk: 232.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-ow4gig8r v1 with job batch system ID: 1234 and disk: 234.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-q95hh_xp v1 with job batch system ID: 1235 and disk: 227.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-c0r5jgl7 v1 with job batch system ID: 1236 and disk: 244.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-aoaruyri v1 with job batch system ID: 1237 and disk: 231.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-rn03ywpd v1 with job batch system ID: 1238 and disk: 234.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-2yrzs4yv v1 with job batch system ID: 1239 and disk: 233.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4ji1l1u8 v1 with job batch system ID: 1240 and disk: 233.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-arurxw88 v1 with job batch system ID: 1241 and disk: 234.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-p_967kzy v1 with job batch system ID: 1242 and disk: 233.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/2/instance-lqxwhp19 v1 with job batch system ID: 1243 and disk: 230.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-jfupi2aq v1 with job batch system ID: 1244 and disk: 236.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-24wf55vf v1 with job batch system ID: 1245 and disk: 233.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-uafha3gp v1 with job batch system ID: 1246 and disk: 219.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-twovfr5c v1 with job batch system ID: 1247 and disk: 231.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-namyvntj v1 with job batch system ID: 1248 and disk: 218.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-p07chtcz v1 with job batch system ID: 1249 and disk: 244.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-gim_9h1a v1 with job batch system ID: 1250 and disk: 225.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-5ilsxn7w v1 with job batch system ID: 1251 and disk: 230.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-iyk5bk13 v1 with job batch system ID: 1252 and disk: 223.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-3if9uopi v1 with job batch system ID: 1253 and disk: 229.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-f7ryy42r v1 with job batch system ID: 1254 and disk: 231.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-wghx6vc4 v1 with job batch system ID: 1255 and disk: 211.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-jocecq9r v1 with job batch system ID: 1256 and disk: 227.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-lwbkmr3v v1 with job batch system ID: 1257 and disk: 230.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_eoibeij v1 with job batch system ID: 1258 and disk: 226.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-56ne694i v1 with job batch system ID: 1259 and disk: 225.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-liz5k08j v1 with job batch system ID: 1260 and disk: 231.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-8kcwmlgu v1 with job batch system ID: 1261 and disk: 228.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-_25173mh v1 with job batch system ID: 1262 and disk: 234.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-dfjghhrt v1 with job batch system ID: 1263 and disk: 238.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-v565_pse v1 with job batch system ID: 1264 and disk: 232.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-yafp6lm1 v1 with job batch system ID: 1265 and disk: 230.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-ltu_pt3z v1 with job batch system ID: 1266 and disk: 231.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-x9g44r0u v1 with job batch system ID: 1267 and disk: 236.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-jc44evbc v1 with job batch system ID: 1268 and disk: 214.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-s883qast v1 with job batch system ID: 1269 and disk: 216.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-md2m12wn v1 with job batch system ID: 1270 and disk: 232.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-2au34qhp v1 with job batch system ID: 1271 and disk: 228.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-rvz6emoy v1 with job batch system ID: 1272 and disk: 223.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-5o8o35p_ v1 with job batch system ID: 1273 and disk: 221.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-es9xsy4z v1 with job batch system ID: 1274 and disk: 227.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-ljqwjsj9 v1 with job batch system ID: 1275 and disk: 206.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-meq6dkpo v1 with job batch system ID: 1276 and disk: 232.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-o8d2r0_o v1 with job batch system ID: 1277 and disk: 230.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-uk59j6kk v1 with job batch system ID: 1278 and disk: 231.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-p86bsa5j v1 with job batch system ID: 1279 and disk: 232.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-tgtnbnfi v1 with job batch system ID: 1280 and disk: 232.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-qpf7yk8_ v1 with job batch system ID: 1281 and disk: 230.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-0ln0feg7 v1 with job batch system ID: 1282 and disk: 226.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-5_a04olx v1 with job batch system ID: 1283 and disk: 225.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-_tdihzv5 v1 with job batch system ID: 1284 and disk: 64.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-jk_vv9__ v1 with job batch system ID: 1285 and disk: 72.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-fz1s3qb0 v1 with job batch system ID: 1286 and disk: 68.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-w32vxml3 v1 with job batch system ID: 1287 and disk: 65.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-y5irg6vy v1 with job batch system ID: 1288 and disk: 65.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-z6ifdugw v1 with job batch system ID: 1289 and disk: 66.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-yov2p7et v1 with job batch system ID: 1290 and disk: 64.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-xui3ze6s v1 with job batch system ID: 1291 and disk: 63.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-3u707eof v1 with job batch system ID: 1292 and disk: 65.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-oj09vy8a v1 with job batch system ID: 1293 and disk: 65.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-mxyf1534 v1 with job batch system ID: 1294 and disk: 72.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-cwllyqky v1 with job batch system ID: 1295 and disk: 77.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-gpelb8f5 v1 with job batch system ID: 1296 and disk: 63.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-5v809eaj v1 with job batch system ID: 1297 and disk: 71.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-qphr_y4w v1 with job batch system ID: 1298 and disk: 69.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-czte6t6b v1 with job batch system ID: 1299 and disk: 64.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-ifevvcig v1 with job batch system ID: 1300 and disk: 66.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-b_9_yp80 v1 with job batch system ID: 1301 and disk: 65.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-cxkbcszp v1 with job batch system ID: 1302 and disk: 62.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4ghsrq7f v1 with job batch system ID: 1303 and disk: 67.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-qfj2o3ej v1 with job batch system ID: 1304 and disk: 69.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-zvtyq7tr v1 with job batch system ID: 1305 and disk: 64.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-pir0rzfb v1 with job batch system ID: 1306 and disk: 71.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ocvtatz7 v1 with job batch system ID: 1307 and disk: 65.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1se_xxvl v1 with job batch system ID: 1308 and disk: 64.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-2nhqgmii v1 with job batch system ID: 1309 and disk: 63.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-yphakqq6 v1 with job batch system ID: 1310 and disk: 68.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-rsc9zmwj v1 with job batch system ID: 1311 and disk: 68.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-_hpm3b65 v1 with job batch system ID: 1312 and disk: 63.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-j9dduvb2 v1 with job batch system ID: 1313 and disk: 66.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-enwmncu_ v1 with job batch system ID: 1314 and disk: 64.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-f98710zt v1 with job batch system ID: 1315 and disk: 69.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-ll_r296u v1 with job batch system ID: 1316 and disk: 69.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-b5kl68qr v1 with job batch system ID: 1317 and disk: 66.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-g4g2u6at v1 with job batch system ID: 1318 and disk: 70.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/2/instance-7qys0fop v1 with job batch system ID: 1319 and disk: 78.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-69re1czb v1 with job batch system ID: 1320 and disk: 72.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-2o2eclf9 v1 with job batch system ID: 1321 and disk: 69.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-j1kwt46q v1 with job batch system ID: 1322 and disk: 66.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-yusxx26m v1 with job batch system ID: 1323 and disk: 69.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-h9byiojt v1 with job batch system ID: 1324 and disk: 71.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-exsymj6z v1 with job batch system ID: 1325 and disk: 64.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-udy5mmrv v1 with job batch system ID: 1326 and disk: 69.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-qvafxo7e v1 with job batch system ID: 1327 and disk: 66.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-imkry8hl v1 with job batch system ID: 1328 and disk: 69.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-9k2q8j48 v1 with job batch system ID: 1329 and disk: 71.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-fapsfyar v1 with job batch system ID: 1330 and disk: 70.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-re6ibunp v1 with job batch system ID: 1331 and disk: 69.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/2/instance-en93caly v1 with job batch system ID: 1332 and disk: 68.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-thbwnl04 v1 with job batch system ID: 1333 and disk: 73.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-gvk5fon3 v1 with job batch system ID: 1334 and disk: 62.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-de5y7jfi v1 with job batch system ID: 1335 and disk: 64.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_vxsvu0k v1 with job batch system ID: 1336 and disk: 70.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-apmxry5_ v1 with job batch system ID: 1337 and disk: 71.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-fiju6x8x v1 with job batch system ID: 1338 and disk: 64.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-dcj1kx9t v1 with job batch system ID: 1339 and disk: 65.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-hfhz7ibz v1 with job batch system ID: 1340 and disk: 63.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-w1x5y8e6 v1 with job batch system ID: 1341 and disk: 66.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-b3gtp9md v1 with job batch system ID: 1342 and disk: 66.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-hhrjs3po v1 with job batch system ID: 1343 and disk: 68.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-_u3_q3xh v1 with job batch system ID: 1344 and disk: 70.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-uem24vea v1 with job batch system ID: 1345 and disk: 68.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-5g6wlcin v1 with job batch system ID: 1346 and disk: 70.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-r8le0n2z v1 with job batch system ID: 1347 and disk: 68.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-y5q_qdnm v1 with job batch system ID: 1348 and disk: 66.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-jwoqy6ck v1 with job batch system ID: 1349 and disk: 65.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-thq7l8fi v1 with job batch system ID: 1350 and disk: 64.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-sua_iuu9 v1 with job batch system ID: 1351 and disk: 66.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-h21gba66 v1 with job batch system ID: 1352 and disk: 70.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-9867ovif v1 with job batch system ID: 1353 and disk: 63.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-u1go_2hb v1 with job batch system ID: 1354 and disk: 71.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-gx0gybp3 v1 with job batch system ID: 1355 and disk: 71.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-abz5lmdp v1 with job batch system ID: 1356 and disk: 63.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-i8xmxa3o v1 with job batch system ID: 1357 and disk: 65.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-j43yhz3j v1 with job batch system ID: 1358 and disk: 73.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-g3ymvky7 v1 with job batch system ID: 1359 and disk: 68.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/2/instance-mjew6p46 v1 with job batch system ID: 1360 and disk: 63.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-qww1u9j1 v1 with job batch system ID: 1361 and disk: 73.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-u_3gng_7 v1 with job batch system ID: 1362 and disk: 64.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-8lalvylu v1 with job batch system ID: 1363 and disk: 66.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-306x1rf8 v1 with job batch system ID: 1364 and disk: 70.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ztdl6ivw v1 with job batch system ID: 1365 and disk: 71.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-3iwo_xj_ v1 with job batch system ID: 1366 and disk: 65.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-t43nxrci v1 with job batch system ID: 1367 and disk: 68.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/2/instance-euiw3bjw v1 with job batch system ID: 1368 and disk: 69.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-9w7en0au v1 with job batch system ID: 1369 and disk: 62.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-9ths72mx v1 with job batch system ID: 1370 and disk: 73.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ig5co2_j v1 with job batch system ID: 1371 and disk: 68.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-li4iq9qa v1 with job batch system ID: 1372 and disk: 71.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-12cnbgyk v1 with job batch system ID: 1373 and disk: 65.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-xyu_avhn v1 with job batch system ID: 1374 and disk: 67.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-2h8plcis v1 with job batch system ID: 1375 and disk: 417.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-hf187jfp v1 with job batch system ID: 1376 and disk: 426.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-w6ox4dfj v1 with job batch system ID: 1377 and disk: 422.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-y24c9onr v1 with job batch system ID: 1378 and disk: 433.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-zqizh1n3 v1 with job batch system ID: 1379 and disk: 427.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-a3d72cy6 v1 with job batch system ID: 1380 and disk: 429.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-3csm916g v1 with job batch system ID: 1381 and disk: 424.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-yil62gy7 v1 with job batch system ID: 1382 and disk: 427.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7za35i35 v1 with job batch system ID: 1383 and disk: 418.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-y2ve4j6k v1 with job batch system ID: 1384 and disk: 417.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-fk89tdv_ v1 with job batch system ID: 1385 and disk: 431.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-61pe9lwb v1 with job batch system ID: 1386 and disk: 428.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-3euk9e9z v1 with job batch system ID: 1387 and disk: 428.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-sfgpm3kl v1 with job batch system ID: 1388 and disk: 419.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-oeg4jghp v1 with job batch system ID: 1389 and disk: 423.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-q8ci4k3i v1 with job batch system ID: 1390 and disk: 414.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-m1sfc__4 v1 with job batch system ID: 1391 and disk: 423.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-y74ic9tg v1 with job batch system ID: 1392 and disk: 429.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-cz46s0vh v1 with job batch system ID: 1393 and disk: 431.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-xbix72u1 v1 with job batch system ID: 1394 and disk: 418.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-sx5v_lq1 v1 with job batch system ID: 1395 and disk: 418.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-mx9t7n80 v1 with job batch system ID: 1396 and disk: 421.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4uuv3fuk v1 with job batch system ID: 1397 and disk: 437.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-vzyl69_9 v1 with job batch system ID: 1398 and disk: 430.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-41mjbc5e v1 with job batch system ID: 1399 and disk: 431.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-qoeazl5d v1 with job batch system ID: 1400 and disk: 430.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-odq2dbq5 v1 with job batch system ID: 1401 and disk: 433.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-d84z_kgv v1 with job batch system ID: 1402 and disk: 417.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-a2uj6m0a v1 with job batch system ID: 1403 and disk: 426.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-ft4rglo2 v1 with job batch system ID: 1404 and disk: 432.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-9t6bmc3k v1 with job batch system ID: 1405 and disk: 418.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-2jjnzp4i v1 with job batch system ID: 1406 and disk: 422.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-yro7r6ud v1 with job batch system ID: 1407 and disk: 419.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-k6k2rduj v1 with job batch system ID: 1408 and disk: 425.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-8i3hk7p0 v1 with job batch system ID: 1409 and disk: 426.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-z62zqegm v1 with job batch system ID: 1410 and disk: 433.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-l83v9c_z v1 with job batch system ID: 1411 and disk: 426.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-79tf_s2e v1 with job batch system ID: 1412 and disk: 432.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-vki7si5i v1 with job batch system ID: 1413 and disk: 432.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-yj4hns70 v1 with job batch system ID: 1414 and disk: 417.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-_68bv9gu v1 with job batch system ID: 1415 and disk: 433.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-dz1i86nb v1 with job batch system ID: 1416 and disk: 421.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-kcgtl7n2 v1 with job batch system ID: 1417 and disk: 432.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-c022f4ql v1 with job batch system ID: 1418 and disk: 427.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-odkf7kqq v1 with job batch system ID: 1419 and disk: 433.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-y13wll8l v1 with job batch system ID: 1420 and disk: 421.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-okxci56v v1 with job batch system ID: 1421 and disk: 426.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-avqtc8s1 v1 with job batch system ID: 1422 and disk: 426.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-lhenpemf v1 with job batch system ID: 1423 and disk: 423.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-0m4hn8gi v1 with job batch system ID: 1424 and disk: 417.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-sz5g8fjr v1 with job batch system ID: 1425 and disk: 419.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-yvc3q7nw v1 with job batch system ID: 1426 and disk: 425.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-s50do57v v1 with job batch system ID: 1427 and disk: 432.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ozcgx5jh v1 with job batch system ID: 1428 and disk: 425.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-zysslp7x v1 with job batch system ID: 1429 and disk: 416.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-0wsx7w12 v1 with job batch system ID: 1430 and disk: 417.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/2/instance-8mbet9pt v1 with job batch system ID: 1431 and disk: 433.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-rzm53cce v1 with job batch system ID: 1432 and disk: 444.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-v6lv84z6 v1 with job batch system ID: 1433 and disk: 421.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-tf10zlos v1 with job batch system ID: 1434 and disk: 421.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-jd9cme86 v1 with job batch system ID: 1435 and disk: 429.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-puw6am76 v1 with job batch system ID: 1436 and disk: 419.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-jufvv3sq v1 with job batch system ID: 1437 and disk: 426.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-1qhuqetm v1 with job batch system ID: 1438 and disk: 437.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-nqlr64hs v1 with job batch system ID: 1439 and disk: 431.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-pir2xqtu v1 with job batch system ID: 1440 and disk: 424.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-tlfm1g9m v1 with job batch system ID: 1441 and disk: 426.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-wf0jsmf6 v1 with job batch system ID: 1442 and disk: 417.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-j5oicaxz v1 with job batch system ID: 1443 and disk: 431.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-53o8v27r v1 with job batch system ID: 1444 and disk: 431.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-wxh2iq1w v1 with job batch system ID: 1445 and disk: 429.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-n6blp7bw v1 with job batch system ID: 1446 and disk: 433.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-g2kb7xhe v1 with job batch system ID: 1447 and disk: 426.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-oj7bujgb v1 with job batch system ID: 1448 and disk: 424.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-tek34_s8 v1 with job batch system ID: 1449 and disk: 415.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-fi69oil1 v1 with job batch system ID: 1450 and disk: 425.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-89y4dhg8 v1 with job batch system ID: 1451 and disk: 429.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-r8ep147l v1 with job batch system ID: 1452 and disk: 426.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-vdyb4pkz v1 with job batch system ID: 1453 and disk: 418.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-p26ozluq v1 with job batch system ID: 1454 and disk: 417.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ouddslvm v1 with job batch system ID: 1455 and disk: 426.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-a0q8z43n v1 with job batch system ID: 1456 and disk: 423.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-ujn29j5a v1 with job batch system ID: 1457 and disk: 425.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-hl2p7fr0 v1 with job batch system ID: 1458 and disk: 427.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-lhivrdkz v1 with job batch system ID: 1459 and disk: 430.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-aar5ltxu v1 with job batch system ID: 1460 and disk: 413.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-ssxtn3p_ v1 with job batch system ID: 1461 and disk: 433.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7ehlsjda v1 with job batch system ID: 1462 and disk: 427.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-az6qyjyy v1 with job batch system ID: 1463 and disk: 425.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-t1z77lht v1 with job batch system ID: 1464 and disk: 418.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-2sr38r79 v1 with job batch system ID: 1465 and disk: 431.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-85e0oydg v1 with job batch system ID: 1466 and disk: 242.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-k4n2r_6n v1 with job batch system ID: 1467 and disk: 241.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-wjzbpruq v1 with job batch system ID: 1468 and disk: 250.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-39x46u6q v1 with job batch system ID: 1469 and disk: 241.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-4ky2hllx v1 with job batch system ID: 1470 and disk: 242.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-726yjgrn v1 with job batch system ID: 1471 and disk: 242.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-u0d83rjb v1 with job batch system ID: 1472 and disk: 242.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-2dsfqlx9 v1 with job batch system ID: 1473 and disk: 242.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-0xjir9la v1 with job batch system ID: 1474 and disk: 239.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-73bun7fh v1 with job batch system ID: 1475 and disk: 242.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-stlcssgr v1 with job batch system ID: 1476 and disk: 242.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-84vbjny7 v1 with job batch system ID: 1477 and disk: 242.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-9iwc1819 v1 with job batch system ID: 1478 and disk: 240.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-jwst171g v1 with job batch system ID: 1479 and disk: 242.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-1h5rvv3_ v1 with job batch system ID: 1480 and disk: 243.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-2xv197kx v1 with job batch system ID: 1481 and disk: 243.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-3yvqv1e9 v1 with job batch system ID: 1482 and disk: 242.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-0w6b9yew v1 with job batch system ID: 1483 and disk: 242.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-wtsfu3d9 v1 with job batch system ID: 1484 and disk: 241.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-xescqhcp v1 with job batch system ID: 1485 and disk: 241.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-bocvw9mj v1 with job batch system ID: 1486 and disk: 242.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-6ydwxd18 v1 with job batch system ID: 1487 and disk: 242.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-55yd_lm8 v1 with job batch system ID: 1488 and disk: 243.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-rim08oej v1 with job batch system ID: 1489 and disk: 243.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-ump1z4d8 v1 with job batch system ID: 1490 and disk: 242.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-sfgg5y44 v1 with job batch system ID: 1491 and disk: 242.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-2ujs5ep4 v1 with job batch system ID: 1492 and disk: 242.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-7eieo69s v1 with job batch system ID: 1493 and disk: 238.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-wgj5t9le v1 with job batch system ID: 1494 and disk: 240.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1ox6qo4i v1 with job batch system ID: 1495 and disk: 244.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-qh1uqlg1 v1 with job batch system ID: 1496 and disk: 241.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4dhvoy47 v1 with job batch system ID: 1497 and disk: 241.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-08mb2s30 v1 with job batch system ID: 1498 and disk: 241.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-qpag5udd v1 with job batch system ID: 1499 and disk: 242.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-f8nt8yws v1 with job batch system ID: 1500 and disk: 242.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ugeyj9n3 v1 with job batch system ID: 1501 and disk: 242.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-tbvde8nj v1 with job batch system ID: 1502 and disk: 244.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-as9qg_d8 v1 with job batch system ID: 1503 and disk: 241.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-5dxkjw9z v1 with job batch system ID: 1504 and disk: 243.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-wwmkezl3 v1 with job batch system ID: 1505 and disk: 242.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-ummhr2hw v1 with job batch system ID: 1506 and disk: 247.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-t51x2o3x v1 with job batch system ID: 1507 and disk: 242.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1y98jm8h v1 with job batch system ID: 1508 and disk: 241.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-vv9rabht v1 with job batch system ID: 1509 and disk: 242.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-uorqwamj v1 with job batch system ID: 1510 and disk: 242.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-lfs1hgjn v1 with job batch system ID: 1511 and disk: 247.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/2/instance-486c5kdt v1 with job batch system ID: 1512 and disk: 241.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-86y2nvqs v1 with job batch system ID: 1513 and disk: 242.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-8ds7ycfo v1 with job batch system ID: 1514 and disk: 239.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-hh4if9_c v1 with job batch system ID: 1515 and disk: 242.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7ue6bj7j v1 with job batch system ID: 1516 and disk: 242.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-ua3nepq9 v1 with job batch system ID: 1517 and disk: 241.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-0vcwrnrt v1 with job batch system ID: 1518 and disk: 242.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-lhy50nq4 v1 with job batch system ID: 1519 and disk: 248.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-5z1gzq0w v1 with job batch system ID: 1520 and disk: 242.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-sy2uxbfh v1 with job batch system ID: 1521 and disk: 238.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-dzn_x9gi v1 with job batch system ID: 1522 and disk: 242.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-ec4et8sf v1 with job batch system ID: 1523 and disk: 242.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-53tdtzqj v1 with job batch system ID: 1524 and disk: 241.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-ksr4n1eg v1 with job batch system ID: 1525 and disk: 241.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-ab0bcmbv v1 with job batch system ID: 1526 and disk: 242.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-aoc7lcwv v1 with job batch system ID: 1527 and disk: 242.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-oi2553qu v1 with job batch system ID: 1528 and disk: 241.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-9vt5tr0_ v1 with job batch system ID: 1529 and disk: 241.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-vsbq9_0k v1 with job batch system ID: 1530 and disk: 240.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-hd8v24q5 v1 with job batch system ID: 1531 and disk: 244.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-gny_4hjp v1 with job batch system ID: 1532 and disk: 242.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4dgovil9 v1 with job batch system ID: 1533 and disk: 242.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-httgav28 v1 with job batch system ID: 1534 and disk: 242.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-4l63u2if v1 with job batch system ID: 1535 and disk: 242.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-g9pefk7p v1 with job batch system ID: 1536 and disk: 242.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-2w77ppki v1 with job batch system ID: 1537 and disk: 243.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-acwee6_w v1 with job batch system ID: 1538 and disk: 242.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-_w_zyu_h v1 with job batch system ID: 1539 and disk: 244.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-05301cjw v1 with job batch system ID: 1540 and disk: 242.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-8bgky6cg v1 with job batch system ID: 1541 and disk: 242.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-03sxmqvh v1 with job batch system ID: 1542 and disk: 242.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-hvy2bokv v1 with job batch system ID: 1543 and disk: 239.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-grc403if v1 with job batch system ID: 1544 and disk: 240.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4v68ezzo v1 with job batch system ID: 1545 and disk: 242.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-00wyp6_9 v1 with job batch system ID: 1546 and disk: 242.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-zjebqvja v1 with job batch system ID: 1547 and disk: 242.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-y8up_04l v1 with job batch system ID: 1548 and disk: 242.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-pf9_tpkd v1 with job batch system ID: 1549 and disk: 242.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-aovlocjr v1 with job batch system ID: 1550 and disk: 242.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-iaoebi7n v1 with job batch system ID: 1551 and disk: 242.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-5tofqofs v1 with job batch system ID: 1552 and disk: 242.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-zbxcs5gf v1 with job batch system ID: 1553 and disk: 242.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-z463jrup v1 with job batch system ID: 1554 and disk: 242.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-lj6sjw1m v1 with job batch system ID: 1555 and disk: 242.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/2/instance-5aiejbac v1 with job batch system ID: 1556 and disk: 242.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-gpwdvbed v1 with job batch system ID: 1557 and disk: 103.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-v37skhbu v1 with job batch system ID: 1558 and disk: 102.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-fltdivzg v1 with job batch system ID: 1559 and disk: 102.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-_thbw6mc v1 with job batch system ID: 1560 and disk: 103.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1naqnr0k v1 with job batch system ID: 1561 and disk: 102.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-1b0ycqvh v1 with job batch system ID: 1562 and disk: 102.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-ulo5o65e v1 with job batch system ID: 1563 and disk: 103.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-23rurczw v1 with job batch system ID: 1564 and disk: 103.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-nukupg7a v1 with job batch system ID: 1565 and disk: 103.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-980n6h9k v1 with job batch system ID: 1566 and disk: 101.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-wv_6224f v1 with job batch system ID: 1567 and disk: 102.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ylnzw7ic v1 with job batch system ID: 1568 and disk: 102.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-pp5tjd8m v1 with job batch system ID: 1569 and disk: 102.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-jntse9oe v1 with job batch system ID: 1570 and disk: 101.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-sk_vsr_l v1 with job batch system ID: 1571 and disk: 102.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-oxeoa___ v1 with job batch system ID: 1572 and disk: 103.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-ybiojgoe v1 with job batch system ID: 1573 and disk: 102.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-i6ceqgak v1 with job batch system ID: 1574 and disk: 102.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-fnqevrtp v1 with job batch system ID: 1575 and disk: 103.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-x6qmb518 v1 with job batch system ID: 1576 and disk: 102.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-rk0bpi54 v1 with job batch system ID: 1577 and disk: 102.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-hzt042h2 v1 with job batch system ID: 1578 and disk: 102.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-6e7gdvly v1 with job batch system ID: 1579 and disk: 111.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-h74ymg18 v1 with job batch system ID: 1580 and disk: 102.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-c2h66_3z v1 with job batch system ID: 1581 and disk: 102.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-gtfe5y7w v1 with job batch system ID: 1582 and disk: 103.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-hz3bgbpp v1 with job batch system ID: 1583 and disk: 102.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-i4lzpuki v1 with job batch system ID: 1584 and disk: 101.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ybw9hmuk v1 with job batch system ID: 1585 and disk: 103.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7wqowjef v1 with job batch system ID: 1586 and disk: 102.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-lg22f780 v1 with job batch system ID: 1587 and disk: 102.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-xew_mzq1 v1 with job batch system ID: 1588 and disk: 102.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-asq2n_me v1 with job batch system ID: 1589 and disk: 102.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-hkh2zf4h v1 with job batch system ID: 1590 and disk: 102.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-14k2upi7 v1 with job batch system ID: 1591 and disk: 103.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-l_f_mro6 v1 with job batch system ID: 1592 and disk: 102.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-56w3tzgj v1 with job batch system ID: 1593 and disk: 103.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-xn02rrtg v1 with job batch system ID: 1594 and disk: 104.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-52gmbrpf v1 with job batch system ID: 1595 and disk: 103.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-3oycb6_4 v1 with job batch system ID: 1596 and disk: 102.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-241c27xu v1 with job batch system ID: 1597 and disk: 102.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-aikpodsq v1 with job batch system ID: 1598 and disk: 101.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-_654t2uf v1 with job batch system ID: 1599 and disk: 102.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-lj91a5yr v1 with job batch system ID: 1600 and disk: 102.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-xv3sp0o9 v1 with job batch system ID: 1601 and disk: 102.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-bmn8xo2l v1 with job batch system ID: 1602 and disk: 103.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7ryk49rp v1 with job batch system ID: 1603 and disk: 102.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-aejqugs9 v1 with job batch system ID: 1604 and disk: 100.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7v6vmvd4 v1 with job batch system ID: 1605 and disk: 99.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-c9t0no_e v1 with job batch system ID: 1606 and disk: 103.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-ggbdbwhh v1 with job batch system ID: 1607 and disk: 102.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-hxsi9fsz v1 with job batch system ID: 1608 and disk: 102.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-101x3imd v1 with job batch system ID: 1609 and disk: 102.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-mbrhwtke v1 with job batch system ID: 1610 and disk: 101.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-lw3zx6sk v1 with job batch system ID: 1611 and disk: 102.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-y8qb6__o v1 with job batch system ID: 1612 and disk: 103.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-ut7q8cm2 v1 with job batch system ID: 1613 and disk: 102.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-2p02fx4k v1 with job batch system ID: 1614 and disk: 102.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-3p3tslup v1 with job batch system ID: 1615 and disk: 102.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-22g1x7_p v1 with job batch system ID: 1616 and disk: 101.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-0jhwt2qk v1 with job batch system ID: 1617 and disk: 102.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-418kmx5i v1 with job batch system ID: 1618 and disk: 102.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-7n6z6lw8 v1 with job batch system ID: 1619 and disk: 102.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ugh_15jw v1 with job batch system ID: 1620 and disk: 101.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-qxlggr0f v1 with job batch system ID: 1621 and disk: 102.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-cm7bkgge v1 with job batch system ID: 1622 and disk: 102.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-jrfy295x v1 with job batch system ID: 1623 and disk: 102.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-jyelkrbv v1 with job batch system ID: 1624 and disk: 102.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-558f3urx v1 with job batch system ID: 1625 and disk: 103.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-84e5dqh3 v1 with job batch system ID: 1626 and disk: 103.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-p2408ssf v1 with job batch system ID: 1627 and disk: 101.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-rl70na_a v1 with job batch system ID: 1628 and disk: 102.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-86q670nh v1 with job batch system ID: 1629 and disk: 102.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-31gboicu v1 with job batch system ID: 1630 and disk: 104.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ty5oe8dq v1 with job batch system ID: 1631 and disk: 103.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-l7jbb5g8 v1 with job batch system ID: 1632 and disk: 102.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-5smrmbed v1 with job batch system ID: 1633 and disk: 102.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-kk7w4djl v1 with job batch system ID: 1634 and disk: 101.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-6d_egtq7 v1 with job batch system ID: 1635 and disk: 102.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-vsyi5g65 v1 with job batch system ID: 1636 and disk: 102.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-vfhbfmxo v1 with job batch system ID: 1637 and disk: 101.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-5djnyb8k v1 with job batch system ID: 1638 and disk: 102.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ui40gzn_ v1 with job batch system ID: 1639 and disk: 102.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-bloxefj3 v1 with job batch system ID: 1640 and disk: 101.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-inf9_kx2 v1 with job batch system ID: 1641 and disk: 102.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-qkk0km4t v1 with job batch system ID: 1642 and disk: 101.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-_rdi4igc v1 with job batch system ID: 1643 and disk: 102.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-lo9dlafj v1 with job batch system ID: 1644 and disk: 100.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-32fvou_3 v1 with job batch system ID: 1645 and disk: 102.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-4vql5mw0 v1 with job batch system ID: 1646 and disk: 101.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-rukt5d8e v1 with job batch system ID: 1647 and disk: 101.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-0qpmy799 v1 with job batch system ID: 1648 and disk: 288.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-udim82__ v1 with job batch system ID: 1649 and disk: 287.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-vg8uva4e v1 with job batch system ID: 1650 and disk: 287.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-jmbd3u3o v1 with job batch system ID: 1651 and disk: 287.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-r9dbx1q3 v1 with job batch system ID: 1652 and disk: 288.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-k19dcjen v1 with job batch system ID: 1653 and disk: 287.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-5f50i0zw v1 with job batch system ID: 1654 and disk: 284.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-josjzk7d v1 with job batch system ID: 1655 and disk: 286.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-wmq44wid v1 with job batch system ID: 1656 and disk: 288.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-ug67u_9w v1 with job batch system ID: 1657 and disk: 287.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-el_685dp v1 with job batch system ID: 1658 and disk: 288.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-x4mysrwz v1 with job batch system ID: 1659 and disk: 288.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-w6id85cs v1 with job batch system ID: 1660 and disk: 286.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-elzxndfa v1 with job batch system ID: 1661 and disk: 287.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-pwy3o1or v1 with job batch system ID: 1662 and disk: 289.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-dbifq5rh v1 with job batch system ID: 1663 and disk: 287.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-m5bsq31o v1 with job batch system ID: 1664 and disk: 289.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-li4a6qd4 v1 with job batch system ID: 1665 and disk: 288.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-1a3qu1v7 v1 with job batch system ID: 1666 and disk: 287.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-wj67kfoj v1 with job batch system ID: 1667 and disk: 287.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-fdu5rm5w v1 with job batch system ID: 1668 and disk: 288.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-avyhrtr9 v1 with job batch system ID: 1669 and disk: 284.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-y8x5hnqg v1 with job batch system ID: 1670 and disk: 287.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-27wqpyez v1 with job batch system ID: 1671 and disk: 286.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-d5qk2ibz v1 with job batch system ID: 1672 and disk: 288.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1xej6uc1 v1 with job batch system ID: 1673 and disk: 286.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-4gkf7dme v1 with job batch system ID: 1674 and disk: 287.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-2ru80ino v1 with job batch system ID: 1675 and disk: 287.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-9oree6tf v1 with job batch system ID: 1676 and disk: 287.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-pm6gu5nw v1 with job batch system ID: 1677 and disk: 293.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-q75oxgp8 v1 with job batch system ID: 1678 and disk: 287.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-2_db4zv0 v1 with job batch system ID: 1679 and disk: 287.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-psy68ks5 v1 with job batch system ID: 1680 and disk: 287.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4786bgna v1 with job batch system ID: 1681 and disk: 288.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-xsu876rz v1 with job batch system ID: 1682 and disk: 287.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-9wvzzqc0 v1 with job batch system ID: 1683 and disk: 289.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-g7vqxmkf v1 with job batch system ID: 1684 and disk: 287.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-rfb_k1m3 v1 with job batch system ID: 1685 and disk: 286.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-594lrwg8 v1 with job batch system ID: 1686 and disk: 303.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-jtywt5up v1 with job batch system ID: 1687 and disk: 290.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-r6zdh3_p v1 with job batch system ID: 1688 and disk: 288.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-8by1f4fn v1 with job batch system ID: 1689 and disk: 288.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-e90lcl0v v1 with job batch system ID: 1690 and disk: 287.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-susop6l_ v1 with job batch system ID: 1691 and disk: 290.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ph4fhrdb v1 with job batch system ID: 1692 and disk: 286.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-o2u1orc9 v1 with job batch system ID: 1693 and disk: 287.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-yojnq_f2 v1 with job batch system ID: 1694 and disk: 288.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-lvh24fh9 v1 with job batch system ID: 1695 and disk: 287.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-jwdz445f v1 with job batch system ID: 1696 and disk: 287.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-51garyuv v1 with job batch system ID: 1697 and disk: 285.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-a7x0fsul v1 with job batch system ID: 1698 and disk: 287.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-8u1p0g5l v1 with job batch system ID: 1699 and disk: 286.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-nz8oztug v1 with job batch system ID: 1700 and disk: 288.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-vnsirntp v1 with job batch system ID: 1701 and disk: 286.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-afh8yrxv v1 with job batch system ID: 1702 and disk: 287.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-eyilabu0 v1 with job batch system ID: 1703 and disk: 285.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-zuv98oo7 v1 with job batch system ID: 1704 and disk: 291.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-vge4encx v1 with job batch system ID: 1705 and disk: 290.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ix4ig9za v1 with job batch system ID: 1706 and disk: 287.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-6_mngb8e v1 with job batch system ID: 1707 and disk: 288.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-y1ci29mg v1 with job batch system ID: 1708 and disk: 286.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-kh328xge v1 with job batch system ID: 1709 and disk: 285.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-om_q60py v1 with job batch system ID: 1710 and disk: 287.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_k2e6y_k v1 with job batch system ID: 1711 and disk: 285.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-g1kit65i v1 with job batch system ID: 1712 and disk: 288.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-jjk9scwp v1 with job batch system ID: 1713 and disk: 287.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-jp0hgg6n v1 with job batch system ID: 1714 and disk: 288.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-6w7k6k7l v1 with job batch system ID: 1715 and disk: 285.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-d68hk6ss v1 with job batch system ID: 1716 and disk: 287.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-x333ujxf v1 with job batch system ID: 1717 and disk: 284.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-etpdld5t v1 with job batch system ID: 1718 and disk: 286.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-lzsneeo_ v1 with job batch system ID: 1719 and disk: 286.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-toklcp9y v1 with job batch system ID: 1720 and disk: 284.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-vneiq1qd v1 with job batch system ID: 1721 and disk: 287.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-n_jfrgjl v1 with job batch system ID: 1722 and disk: 287.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-_k832_7d v1 with job batch system ID: 1723 and disk: 287.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-5ui7n2qa v1 with job batch system ID: 1724 and disk: 287.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-mgekokqy v1 with job batch system ID: 1725 and disk: 288.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-fm9m_btl v1 with job batch system ID: 1726 and disk: 288.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-g4kmd2f_ v1 with job batch system ID: 1727 and disk: 286.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-4x8erxmf v1 with job batch system ID: 1728 and disk: 286.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-e64yy1u6 v1 with job batch system ID: 1729 and disk: 287.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-t34bppyh v1 with job batch system ID: 1730 and disk: 286.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-3i_6iasp v1 with job batch system ID: 1731 and disk: 289.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-m55lx3gm v1 with job batch system ID: 1732 and disk: 287.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-lcso13k9 v1 with job batch system ID: 1733 and disk: 288.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-dufs7vpy v1 with job batch system ID: 1734 and disk: 286.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-rd3c7__w v1 with job batch system ID: 1735 and disk: 288.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-lqqo06gu v1 with job batch system ID: 1736 and disk: 288.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-sggfwv69 v1 with job batch system ID: 1737 and disk: 288.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-2zxrlq__ v1 with job batch system ID: 1738 and disk: 288.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1stpqtkh v1 with job batch system ID: 1739 and disk: 360.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-y8it6rqz v1 with job batch system ID: 1740 and disk: 363.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-d3icds_m v1 with job batch system ID: 1741 and disk: 360.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-nrgleer_ v1 with job batch system ID: 1742 and disk: 361.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-odwdl5os v1 with job batch system ID: 1743 and disk: 362.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-fgyrm6je v1 with job batch system ID: 1744 and disk: 370.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-r2db5tnw v1 with job batch system ID: 1745 and disk: 361.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-0f63oh4s v1 with job batch system ID: 1746 and disk: 359.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-mp8xv7fo v1 with job batch system ID: 1747 and disk: 363.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-di16ls3b v1 with job batch system ID: 1748 and disk: 362.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-9dxmaw3s v1 with job batch system ID: 1749 and disk: 364.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-1pglvewe v1 with job batch system ID: 1750 and disk: 362.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-s8399r66 v1 with job batch system ID: 1751 and disk: 362.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-4wmaaf_3 v1 with job batch system ID: 1752 and disk: 362.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-vh3snan2 v1 with job batch system ID: 1753 and disk: 362.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-77fpcxbo v1 with job batch system ID: 1754 and disk: 361.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-fdqzb15h v1 with job batch system ID: 1755 and disk: 360.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-5haaa7d1 v1 with job batch system ID: 1756 and disk: 362.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-cc3_hqoo v1 with job batch system ID: 1757 and disk: 362.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-9xp6kptr v1 with job batch system ID: 1758 and disk: 358.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-9om4_9od v1 with job batch system ID: 1759 and disk: 364.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-7xedn9xy v1 with job batch system ID: 1760 and disk: 361.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-zz_j4d0e v1 with job batch system ID: 1761 and disk: 364.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-eeomccky v1 with job batch system ID: 1762 and disk: 363.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/2/instance-783gwr1q v1 with job batch system ID: 1763 and disk: 359.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-kxafu1ct v1 with job batch system ID: 1764 and disk: 363.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-rpygliht v1 with job batch system ID: 1765 and disk: 359.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_zg4gz6e v1 with job batch system ID: 1766 and disk: 361.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-yqj1tu29 v1 with job batch system ID: 1767 and disk: 362.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-vv4ke6m3 v1 with job batch system ID: 1768 and disk: 363.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-tz_lbpuy v1 with job batch system ID: 1769 and disk: 362.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-k4vzsb_5 v1 with job batch system ID: 1770 and disk: 362.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7c0er3bg v1 with job batch system ID: 1771 and disk: 362.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-rlooezq3 v1 with job batch system ID: 1772 and disk: 361.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-rqgaz8ox v1 with job batch system ID: 1773 and disk: 363.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-s92afwq7 v1 with job batch system ID: 1774 and disk: 360.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-3pox7cuu v1 with job batch system ID: 1775 and disk: 361.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-axkuc5ga v1 with job batch system ID: 1776 and disk: 361.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-rf8b6nia v1 with job batch system ID: 1777 and disk: 362.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-8_07s1as v1 with job batch system ID: 1778 and disk: 366.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-ou7lcbms v1 with job batch system ID: 1779 and disk: 362.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-9yqy69fc v1 with job batch system ID: 1780 and disk: 362.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-r_u5p3nx v1 with job batch system ID: 1781 and disk: 358.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-eh0ai6t0 v1 with job batch system ID: 1782 and disk: 362.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-_04b9f14 v1 with job batch system ID: 1783 and disk: 361.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-g2vw70i6 v1 with job batch system ID: 1784 and disk: 359.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-whpycmpd v1 with job batch system ID: 1785 and disk: 362.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-q_ami26h v1 with job batch system ID: 1786 and disk: 362.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-gzu8662o v1 with job batch system ID: 1787 and disk: 361.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-71r2kbge v1 with job batch system ID: 1788 and disk: 359.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-r580jdnf v1 with job batch system ID: 1789 and disk: 360.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-rgtxzn2c v1 with job batch system ID: 1790 and disk: 363.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-w0axykog v1 with job batch system ID: 1791 and disk: 360.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-40nhhd52 v1 with job batch system ID: 1792 and disk: 362.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-5g0xb8i5 v1 with job batch system ID: 1793 and disk: 361.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-5peymqv1 v1 with job batch system ID: 1794 and disk: 362.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-b71prbws v1 with job batch system ID: 1795 and disk: 362.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-s54pkysv v1 with job batch system ID: 1796 and disk: 355.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-08oib2bp v1 with job batch system ID: 1797 and disk: 361.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-bb623j_6 v1 with job batch system ID: 1798 and disk: 361.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-8qknm44i v1 with job batch system ID: 1799 and disk: 360.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-vyh6ophn v1 with job batch system ID: 1800 and disk: 360.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-6rr08ryg v1 with job batch system ID: 1801 and disk: 364.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-na911jva v1 with job batch system ID: 1802 and disk: 362.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-pa13t66v v1 with job batch system ID: 1803 and disk: 362.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-h9dfz2_w v1 with job batch system ID: 1804 and disk: 363.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-m0t9eqqd v1 with job batch system ID: 1805 and disk: 364.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-u3yd325i v1 with job batch system ID: 1806 and disk: 364.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-sw2y0h8r v1 with job batch system ID: 1807 and disk: 361.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-476tcnyf v1 with job batch system ID: 1808 and disk: 363.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-l4pkvy_n v1 with job batch system ID: 1809 and disk: 359.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-k3cedj69 v1 with job batch system ID: 1810 and disk: 362.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-zidqgovo v1 with job batch system ID: 1811 and disk: 361.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-b9_1gm8k v1 with job batch system ID: 1812 and disk: 362.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-lbb69v08 v1 with job batch system ID: 1813 and disk: 361.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-difjr8y0 v1 with job batch system ID: 1814 and disk: 361.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-rlfz6no1 v1 with job batch system ID: 1815 and disk: 362.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-dux6hzl8 v1 with job batch system ID: 1816 and disk: 360.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-xmgx6w5a v1 with job batch system ID: 1817 and disk: 362.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-v549e7gz v1 with job batch system ID: 1818 and disk: 359.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-pwl2lkgf v1 with job batch system ID: 1819 and disk: 362.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-ikll1ch_ v1 with job batch system ID: 1820 and disk: 362.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-0af_nu3u v1 with job batch system ID: 1821 and disk: 362.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-ym97tpwd v1 with job batch system ID: 1822 and disk: 361.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-7aj4tcu2 v1 with job batch system ID: 1823 and disk: 362.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-sbxc67ds v1 with job batch system ID: 1824 and disk: 363.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-hzl523a6 v1 with job batch system ID: 1825 and disk: 362.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-5rin1_9v v1 with job batch system ID: 1826 and disk: 361.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-l7ndeb16 v1 with job batch system ID: 1827 and disk: 361.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-xtkd45zr v1 with job batch system ID: 1828 and disk: 362.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-c0keggbk v1 with job batch system ID: 1829 and disk: 360.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-lc__y5hu v1 with job batch system ID: 1830 and disk: 278.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-wb82whib v1 with job batch system ID: 1831 and disk: 278.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-10bjg8td v1 with job batch system ID: 1832 and disk: 276.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-kmrdaqrf v1 with job batch system ID: 1833 and disk: 286.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-g0bhxk5_ v1 with job batch system ID: 1834 and disk: 277.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-qh2_8f76 v1 with job batch system ID: 1835 and disk: 278.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-86l6bkdq v1 with job batch system ID: 1836 and disk: 277.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-r286d99r v1 with job batch system ID: 1837 and disk: 279.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-pyvoppcf v1 with job batch system ID: 1838 and disk: 278.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-6iaw7lyj v1 with job batch system ID: 1839 and disk: 277.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-ddi8vz5t v1 with job batch system ID: 1840 and disk: 277.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-340itbuh v1 with job batch system ID: 1841 and disk: 276.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-anzhc3x_ v1 with job batch system ID: 1842 and disk: 277.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-qh_cpro2 v1 with job batch system ID: 1843 and disk: 277.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_w64a_5n v1 with job batch system ID: 1844 and disk: 276.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-508cvkdh v1 with job batch system ID: 1845 and disk: 277.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4tvunpvb v1 with job batch system ID: 1846 and disk: 277.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-nkyl2206 v1 with job batch system ID: 1847 and disk: 278.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-y41p00ni v1 with job batch system ID: 1848 and disk: 278.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-bfym_pdp v1 with job batch system ID: 1849 and disk: 278.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-94ljcksr v1 with job batch system ID: 1850 and disk: 280.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-2y3p16gi v1 with job batch system ID: 1851 and disk: 2.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-kjyc1lr_ v1 with job batch system ID: 1852 and disk: 278.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-gmiqnutr v1 with job batch system ID: 1853 and disk: 1.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-8onvubyd v1 with job batch system ID: 1854 and disk: 278.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-rnt8f7ml v1 with job batch system ID: 1855 and disk: 276.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-0jeo93xs v1 with job batch system ID: 1856 and disk: 3.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-xgtq04b6 v1 with job batch system ID: 1857 and disk: 3.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-z6xjlvx3 v1 with job batch system ID: 1858 and disk: 278.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-q55viw13 v1 with job batch system ID: 1859 and disk: 278.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-f6xgrcbh v1 with job batch system ID: 1860 and disk: 279.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-ur884gi_ v1 with job batch system ID: 1861 and disk: 277.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/2/instance-oep72dkk v1 with job batch system ID: 1862 and disk: 278.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-6hab6blc v1 with job batch system ID: 1863 and disk: 276.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_qhzqrdb v1 with job batch system ID: 1864 and disk: 277.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-3imygucu v1 with job batch system ID: 1865 and disk: 278.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-8ul0258h v1 with job batch system ID: 1866 and disk: 3.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-bp45asgh v1 with job batch system ID: 1867 and disk: 276.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-o4ov6in_ v1 with job batch system ID: 1868 and disk: 278.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-x4vimhwk v1 with job batch system ID: 1869 and disk: 274.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-7lrjo7jc v1 with job batch system ID: 1870 and disk: 2.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-9w224onj v1 with job batch system ID: 1871 and disk: 280.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-vsm2t9cz v1 with job batch system ID: 1872 and disk: 278.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-vo_50ksf v1 with job batch system ID: 1873 and disk: 277.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-rl0vhzew v1 with job batch system ID: 1874 and disk: 275.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-ktlhz00j v1 with job batch system ID: 1875 and disk: 276.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-5y0egghq v1 with job batch system ID: 1876 and disk: 277.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-opeht4ls v1 with job batch system ID: 1877 and disk: 277.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-6bpztwtv v1 with job batch system ID: 1878 and disk: 276.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-rozms6xx v1 with job batch system ID: 1879 and disk: 276.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-dorcayhj v1 with job batch system ID: 1880 and disk: 277.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-mz9jgxd2 v1 with job batch system ID: 1881 and disk: 276.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ujuqhzt4 v1 with job batch system ID: 1882 and disk: 277.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-udujhwzg v1 with job batch system ID: 1883 and disk: 2.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-vefe1ix8 v1 with job batch system ID: 1884 and disk: 278.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-jte3uwil v1 with job batch system ID: 1885 and disk: 3.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-3v7_eujq v1 with job batch system ID: 1886 and disk: 276.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-cswlcsjy v1 with job batch system ID: 1887 and disk: 3.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-0o7vb56d v1 with job batch system ID: 1888 and disk: 278.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-wu0pdgzo v1 with job batch system ID: 1889 and disk: 277.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-y4tqqlpf v1 with job batch system ID: 1890 and disk: 277.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4m5epbsc v1 with job batch system ID: 1891 and disk: 277.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-p93zci5z v1 with job batch system ID: 1892 and disk: 277.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_8uusl62 v1 with job batch system ID: 1893 and disk: 3.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-6tfexhdw v1 with job batch system ID: 1894 and disk: 278.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-re2qa8le v1 with job batch system ID: 1895 and disk: 276.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-cchic97h v1 with job batch system ID: 1896 and disk: 277.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-10hfo1nz v1 with job batch system ID: 1897 and disk: 3.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-5zlbotbn v1 with job batch system ID: 1898 and disk: 277.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-sqeq9cn2 v1 with job batch system ID: 1899 and disk: 278.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-e32echn3 v1 with job batch system ID: 1900 and disk: 277.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-97wwmyvx v1 with job batch system ID: 1901 and disk: 276.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-fv2r7mg1 v1 with job batch system ID: 1902 and disk: 3.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-nc1rlt3f v1 with job batch system ID: 1903 and disk: 3.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-p02_pu17 v1 with job batch system ID: 1904 and disk: 3.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-vnpiakwt v1 with job batch system ID: 1905 and disk: 290.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-2s9bgdk4 v1 with job batch system ID: 1906 and disk: 277.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ao5mfiq8 v1 with job batch system ID: 1907 and disk: 277.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-9o72rbbn v1 with job batch system ID: 1908 and disk: 278.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-x9lutia9 v1 with job batch system ID: 1909 and disk: 277.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-39d7h7te v1 with job batch system ID: 1910 and disk: 4.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-_0dw7lxp v1 with job batch system ID: 1911 and disk: 278.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-mhf0mwuz v1 with job batch system ID: 1912 and disk: 285.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-uxzehu1y v1 with job batch system ID: 1913 and disk: 277.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-xfzu9q_o v1 with job batch system ID: 1914 and disk: 3.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-f48mxoqf v1 with job batch system ID: 1915 and disk: 276.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-miq7euiy v1 with job batch system ID: 1916 and disk: 277.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-g_o46com v1 with job batch system ID: 1917 and disk: 277.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-eg43siyp v1 with job batch system ID: 1918 and disk: 277.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-e4dbkgqh v1 with job batch system ID: 1919 and disk: 2.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-lsk0p66r v1 with job batch system ID: 1920 and disk: 275.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-njdfoddc v1 with job batch system ID: 1921 and disk: 140.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-2e_epcns v1 with job batch system ID: 1922 and disk: 139.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-j62bbb7z v1 with job batch system ID: 1923 and disk: 139.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-dkb1s9e5 v1 with job batch system ID: 1924 and disk: 140.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-bl6irk_b v1 with job batch system ID: 1925 and disk: 141.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-n11xqg51 v1 with job batch system ID: 1926 and disk: 138.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-w852o1r7 v1 with job batch system ID: 1927 and disk: 140.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-k7szvihx v1 with job batch system ID: 1928 and disk: 139.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4nixyfgg v1 with job batch system ID: 1929 and disk: 139.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-uy_0evmx v1 with job batch system ID: 1930 and disk: 140.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4ds3mfk8 v1 with job batch system ID: 1931 and disk: 138.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-e7d75awp v1 with job batch system ID: 1932 and disk: 140.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-odrnl8oa v1 with job batch system ID: 1933 and disk: 138.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-p6g2c5pm v1 with job batch system ID: 1934 and disk: 139.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-71s49qgu v1 with job batch system ID: 1935 and disk: 137.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_enb42p8 v1 with job batch system ID: 1936 and disk: 137.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-5e_iybgl v1 with job batch system ID: 1937 and disk: 138.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-cd0ng_gb v1 with job batch system ID: 1938 and disk: 139.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-azw_cucd v1 with job batch system ID: 1939 and disk: 139.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-9ma5k7qj v1 with job batch system ID: 1940 and disk: 138.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-jw2g9ggn v1 with job batch system ID: 1941 and disk: 139.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-o3rdhblw v1 with job batch system ID: 1942 and disk: 139.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4jmj_4ju v1 with job batch system ID: 1943 and disk: 138.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/2/instance-x93fo2ud v1 with job batch system ID: 1944 and disk: 139.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-pz3pajrz v1 with job batch system ID: 1945 and disk: 140.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-5j37arz2 v1 with job batch system ID: 1946 and disk: 140.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-p0ffy57b v1 with job batch system ID: 1947 and disk: 138.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-n2qxqfz_ v1 with job batch system ID: 1948 and disk: 139.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-wsyqv7xu v1 with job batch system ID: 1949 and disk: 138.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-m0cy_y7t v1 with job batch system ID: 1950 and disk: 138.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-tydni702 v1 with job batch system ID: 1951 and disk: 138.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-q7ltuqaf v1 with job batch system ID: 1952 and disk: 137.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-c29zip6v v1 with job batch system ID: 1953 and disk: 139.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-vu90nepu v1 with job batch system ID: 1954 and disk: 138.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-mfry5_88 v1 with job batch system ID: 1955 and disk: 139.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-uqtr7a2p v1 with job batch system ID: 1956 and disk: 138.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-tw5bdj_s v1 with job batch system ID: 1957 and disk: 140.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-l6taac5c v1 with job batch system ID: 1958 and disk: 139.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-0c6hadms v1 with job batch system ID: 1959 and disk: 145.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-xzg6oj__ v1 with job batch system ID: 1960 and disk: 138.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-py471n9r v1 with job batch system ID: 1961 and disk: 137.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-iwislwv9 v1 with job batch system ID: 1962 and disk: 138.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-elajvu7p v1 with job batch system ID: 1963 and disk: 137.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-x8j20tgp v1 with job batch system ID: 1964 and disk: 139.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-z0b7cedu v1 with job batch system ID: 1965 and disk: 139.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-2t2f7ukg v1 with job batch system ID: 1966 and disk: 146.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-549d3x9q v1 with job batch system ID: 1967 and disk: 138.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-bzsp9lzx v1 with job batch system ID: 1968 and disk: 138.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-b9wiiqlu v1 with job batch system ID: 1969 and disk: 139.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-lwiqzhii v1 with job batch system ID: 1970 and disk: 140.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-p89vc32a v1 with job batch system ID: 1971 and disk: 140.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-9debka2e v1 with job batch system ID: 1972 and disk: 139.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-kt_5son1 v1 with job batch system ID: 1973 and disk: 138.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-y_hnkn4q v1 with job batch system ID: 1974 and disk: 140.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-2ndl842p v1 with job batch system ID: 1975 and disk: 139.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_fo2yiha v1 with job batch system ID: 1976 and disk: 140.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-268o_6mb v1 with job batch system ID: 1977 and disk: 142.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7ax8xubc v1 with job batch system ID: 1978 and disk: 138.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-nrvb3fpm v1 with job batch system ID: 1979 and disk: 139.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ca64bgkp v1 with job batch system ID: 1980 and disk: 139.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-rhg_a0w6 v1 with job batch system ID: 1981 and disk: 139.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-2ij3qz_s v1 with job batch system ID: 1982 and disk: 138.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-n9_zl_64 v1 with job batch system ID: 1983 and disk: 140.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-f_20qi59 v1 with job batch system ID: 1984 and disk: 138.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-fdjv6h_2 v1 with job batch system ID: 1985 and disk: 139.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-eyec339s v1 with job batch system ID: 1986 and disk: 140.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-z4ss5_5b v1 with job batch system ID: 1987 and disk: 141.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-uq2u2v2u v1 with job batch system ID: 1988 and disk: 139.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-3ncq52ug v1 with job batch system ID: 1989 and disk: 139.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-9uiljfwo v1 with job batch system ID: 1990 and disk: 139.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-gmo8lmb2 v1 with job batch system ID: 1991 and disk: 139.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-2dcsxlju v1 with job batch system ID: 1992 and disk: 138.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-x_a7d93t v1 with job batch system ID: 1993 and disk: 140.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-pvtuhnvx v1 with job batch system ID: 1994 and disk: 138.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-dvw15f7a v1 with job batch system ID: 1995 and disk: 139.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1q4d48os v1 with job batch system ID: 1996 and disk: 139.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-27redcy6 v1 with job batch system ID: 1997 and disk: 140.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-epy7bc4u v1 with job batch system ID: 1998 and disk: 138.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-a2e3_b5k v1 with job batch system ID: 1999 and disk: 137.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-j300cels v1 with job batch system ID: 2000 and disk: 138.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-g2isbt17 v1 with job batch system ID: 2001 and disk: 139.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-uwax3w9z v1 with job batch system ID: 2002 and disk: 139.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-erxah0yd v1 with job batch system ID: 2003 and disk: 139.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ihu63k_q v1 with job batch system ID: 2004 and disk: 139.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-v1bmloxo v1 with job batch system ID: 2005 and disk: 138.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-s46dehox v1 with job batch system ID: 2006 and disk: 138.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-e4aez50u v1 with job batch system ID: 2007 and disk: 139.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-u30hvkwx v1 with job batch system ID: 2008 and disk: 139.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-yf00auxp v1 with job batch system ID: 2009 and disk: 140.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-h_22g1eo v1 with job batch system ID: 2010 and disk: 139.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-m0ztkd6c v1 with job batch system ID: 2011 and disk: 138.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-6_ran9sx v1 with job batch system ID: 2012 and disk: 345.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-rooxvfbr v1 with job batch system ID: 2013 and disk: 356.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-w5okc65g v1 with job batch system ID: 2014 and disk: 345.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-vqezmyyr v1 with job batch system ID: 2015 and disk: 346.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-m8vy2iwc v1 with job batch system ID: 2016 and disk: 346.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-e7vsvom9 v1 with job batch system ID: 2017 and disk: 345.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4ts148en v1 with job batch system ID: 2018 and disk: 346.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-z7and0r9 v1 with job batch system ID: 2019 and disk: 345.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-xeuma1c4 v1 with job batch system ID: 2020 and disk: 346.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-5rofp8uk v1 with job batch system ID: 2021 and disk: 345.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-gbyyau51 v1 with job batch system ID: 2022 and disk: 345.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-65nb0xey v1 with job batch system ID: 2023 and disk: 345.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7vrr7yo8 v1 with job batch system ID: 2024 and disk: 346.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-fraa1rc2 v1 with job batch system ID: 2025 and disk: 345.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1gegzc4y v1 with job batch system ID: 2026 and disk: 344.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-hq_v4yy4 v1 with job batch system ID: 2027 and disk: 346.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-qs5yk1jq v1 with job batch system ID: 2028 and disk: 344.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-c26gigpw v1 with job batch system ID: 2029 and disk: 347.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-jnh58le2 v1 with job batch system ID: 2030 and disk: 347.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-qjn45h7s v1 with job batch system ID: 2031 and disk: 346.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-9ewbslf9 v1 with job batch system ID: 2032 and disk: 345.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-loo3pthl v1 with job batch system ID: 2033 and disk: 344.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-08rd_gr1 v1 with job batch system ID: 2034 and disk: 347.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-tdbvspmi v1 with job batch system ID: 2035 and disk: 346.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-1_4d8_h3 v1 with job batch system ID: 2036 and disk: 346.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-xvapx_6_ v1 with job batch system ID: 2037 and disk: 344.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-89_5nu4p v1 with job batch system ID: 2038 and disk: 346.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-qsqa34ct v1 with job batch system ID: 2039 and disk: 346.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ccec2bii v1 with job batch system ID: 2040 and disk: 344.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-97v8klyi v1 with job batch system ID: 2041 and disk: 347.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-kxwdvqkn v1 with job batch system ID: 2042 and disk: 345.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-hziogpe0 v1 with job batch system ID: 2043 and disk: 346.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-agfowao2 v1 with job batch system ID: 2044 and disk: 344.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-z0ifosst v1 with job batch system ID: 2045 and disk: 346.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-wl_76hd2 v1 with job batch system ID: 2046 and disk: 344.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-dg_o7d0n v1 with job batch system ID: 2047 and disk: 346.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ofn56ypj v1 with job batch system ID: 2048 and disk: 345.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-a7z3tzg9 v1 with job batch system ID: 2049 and disk: 346.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-cwabatop v1 with job batch system ID: 2050 and disk: 344.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-teh3hv6d v1 with job batch system ID: 2051 and disk: 344.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-vew4suqf v1 with job batch system ID: 2052 and disk: 345.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-hrkomb25 v1 with job batch system ID: 2053 and disk: 345.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-ka739cva v1 with job batch system ID: 2054 and disk: 345.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ovxe2jek v1 with job batch system ID: 2055 and disk: 348.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ffesh_1x v1 with job batch system ID: 2056 and disk: 345.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-426ssqrw v1 with job batch system ID: 2057 and disk: 345.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-s3d3knd6 v1 with job batch system ID: 2058 and disk: 346.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-wopdddcz v1 with job batch system ID: 2059 and disk: 345.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-61mlmmsy v1 with job batch system ID: 2060 and disk: 346.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-zvar0uuz v1 with job batch system ID: 2061 and disk: 345.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-lwp17yiz v1 with job batch system ID: 2062 and disk: 346.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-fpg6lhxh v1 with job batch system ID: 2063 and disk: 346.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-k73faa5l v1 with job batch system ID: 2064 and disk: 347.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-n9x424ee v1 with job batch system ID: 2065 and disk: 345.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-hd6lnioa v1 with job batch system ID: 2066 and disk: 345.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-8wwl4ugl v1 with job batch system ID: 2067 and disk: 345.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-lar705w7 v1 with job batch system ID: 2068 and disk: 345.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-9xs9m71t v1 with job batch system ID: 2069 and disk: 347.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-wpgsdxbg v1 with job batch system ID: 2070 and disk: 345.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-cc2f1yf2 v1 with job batch system ID: 2071 and disk: 345.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-audizczv v1 with job batch system ID: 2072 and disk: 348.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-q902_tt9 v1 with job batch system ID: 2073 and disk: 346.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-twiglz83 v1 with job batch system ID: 2074 and disk: 347.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7q6_5bie v1 with job batch system ID: 2075 and disk: 345.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-99ley2db v1 with job batch system ID: 2076 and disk: 345.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-if266dst v1 with job batch system ID: 2077 and disk: 347.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-lxd3hcog v1 with job batch system ID: 2078 and disk: 345.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-0jwkd5bz v1 with job batch system ID: 2079 and disk: 346.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-k1pwj_0b v1 with job batch system ID: 2080 and disk: 345.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-0y424qgt v1 with job batch system ID: 2081 and disk: 346.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-8su7yvfu v1 with job batch system ID: 2082 and disk: 347.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-66f8tgn1 v1 with job batch system ID: 2083 and disk: 347.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-6vzqqxsf v1 with job batch system ID: 2084 and disk: 346.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-55qxzf2v v1 with job batch system ID: 2085 and disk: 344.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-vtvmt1ob v1 with job batch system ID: 2086 and disk: 349.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-zac3q9ge v1 with job batch system ID: 2087 and disk: 346.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ue4w3z2w v1 with job batch system ID: 2088 and disk: 347.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-su_k8hix v1 with job batch system ID: 2089 and disk: 345.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-nhpq70at v1 with job batch system ID: 2090 and disk: 346.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ruveiaw9 v1 with job batch system ID: 2091 and disk: 344.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-vhy20gxz v1 with job batch system ID: 2092 and disk: 345.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-f7rrurrt v1 with job batch system ID: 2093 and disk: 346.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-j99o5gi2 v1 with job batch system ID: 2094 and disk: 344.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ziqvcsqt v1 with job batch system ID: 2095 and disk: 345.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-n_no49nm v1 with job batch system ID: 2096 and disk: 344.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-cfwz54h2 v1 with job batch system ID: 2097 and disk: 346.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4h_67qyo v1 with job batch system ID: 2098 and disk: 346.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-3e88q_jn v1 with job batch system ID: 2099 and disk: 344.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_ziz0g_d v1 with job batch system ID: 2100 and disk: 346.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-o20kse_t v1 with job batch system ID: 2101 and disk: 346.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ih8ft2z0 v1 with job batch system ID: 2102 and disk: 347.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-kh9lyoyb v1 with job batch system ID: 2103 and disk: 161.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-_w7ts7zc v1 with job batch system ID: 2104 and disk: 144.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_3j6_pg8 v1 with job batch system ID: 2105 and disk: 146.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-0krigmei v1 with job batch system ID: 2106 and disk: 151.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-wr5uq4d0 v1 with job batch system ID: 2107 and disk: 151.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-8ai801qs v1 with job batch system ID: 2108 and disk: 152.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-hgwn5mz5 v1 with job batch system ID: 2109 and disk: 155.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-luh3gr47 v1 with job batch system ID: 2110 and disk: 161.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-t0yqh43x v1 with job batch system ID: 2111 and disk: 145.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-80itdn5_ v1 with job batch system ID: 2112 and disk: 159.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-u7_a43yp v1 with job batch system ID: 2113 and disk: 157.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-33mil4n2 v1 with job batch system ID: 2114 and disk: 159.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-wyop5_lm v1 with job batch system ID: 2115 and disk: 155.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-9dj_z0im v1 with job batch system ID: 2116 and disk: 150.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-9afgaawr v1 with job batch system ID: 2117 and disk: 153.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-i2rdlc4x v1 with job batch system ID: 2118 and disk: 153.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-intbkhj2 v1 with job batch system ID: 2119 and disk: 153.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-dbkhrayw v1 with job batch system ID: 2120 and disk: 157.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-j_ivvzqz v1 with job batch system ID: 2121 and disk: 158.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-e78un3ns v1 with job batch system ID: 2122 and disk: 159.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-k5p56pbl v1 with job batch system ID: 2123 and disk: 152.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-2219emj7 v1 with job batch system ID: 2124 and disk: 155.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-87xig8av v1 with job batch system ID: 2125 and disk: 158.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/2/instance-s1_dv9nu v1 with job batch system ID: 2126 and disk: 156.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-elf93net v1 with job batch system ID: 2127 and disk: 158.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-cqra566s v1 with job batch system ID: 2128 and disk: 153.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1l3k_5hd v1 with job batch system ID: 2129 and disk: 152.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-fqqv_or7 v1 with job batch system ID: 2130 and disk: 151.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-iambmhtz v1 with job batch system ID: 2131 and disk: 163.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-aonqvhtv v1 with job batch system ID: 2132 and disk: 153.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-z1m5qujt v1 with job batch system ID: 2133 and disk: 152.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-d4x82ugf v1 with job batch system ID: 2134 and disk: 155.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ncjr6pc1 v1 with job batch system ID: 2135 and disk: 153.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-a7ulqhxg v1 with job batch system ID: 2136 and disk: 149.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-6dh7fgfq v1 with job batch system ID: 2137 and disk: 155.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-z4kkmru1 v1 with job batch system ID: 2138 and disk: 152.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-mdpbt4g8 v1 with job batch system ID: 2139 and disk: 151.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ls3vyndz v1 with job batch system ID: 2140 and disk: 158.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-80nusnej v1 with job batch system ID: 2141 and disk: 152.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-46k1esy6 v1 with job batch system ID: 2142 and disk: 156.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-qc3lcalg v1 with job batch system ID: 2143 and disk: 151.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-gztdgd68 v1 with job batch system ID: 2144 and disk: 146.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-dm33qzk7 v1 with job batch system ID: 2145 and disk: 155.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_wioawc1 v1 with job batch system ID: 2146 and disk: 153.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-add_jcxv v1 with job batch system ID: 2147 and disk: 156.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-lp928zkr v1 with job batch system ID: 2148 and disk: 148.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-6k6sjdas v1 with job batch system ID: 2149 and disk: 155.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-fbab8rnk v1 with job batch system ID: 2150 and disk: 150.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-m6dwl68z v1 with job batch system ID: 2151 and disk: 148.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-txb72xnd v1 with job batch system ID: 2152 and disk: 155.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-m0a44fl7 v1 with job batch system ID: 2153 and disk: 154.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-art7g1jd v1 with job batch system ID: 2154 and disk: 153.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-xtiszguf v1 with job batch system ID: 2155 and disk: 153.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-dfi9glc4 v1 with job batch system ID: 2156 and disk: 157.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-0vrfhocs v1 with job batch system ID: 2157 and disk: 153.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-0urd28l7 v1 with job batch system ID: 2158 and disk: 151.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-bs5_2sn1 v1 with job batch system ID: 2159 and disk: 152.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-90f9krt9 v1 with job batch system ID: 2160 and disk: 162.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-zy1yv8y5 v1 with job batch system ID: 2161 and disk: 148.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-a7_nvp4n v1 with job batch system ID: 2162 and disk: 154.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-w8ekiltp v1 with job batch system ID: 2163 and disk: 155.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-3gv8kbth v1 with job batch system ID: 2164 and disk: 153.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-0rh1wgzq v1 with job batch system ID: 2165 and disk: 154.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-brg8mwcq v1 with job batch system ID: 2166 and disk: 155.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-aoz4g_nu v1 with job batch system ID: 2167 and disk: 157.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-ok610qh3 v1 with job batch system ID: 2168 and disk: 156.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-t58ne5w4 v1 with job batch system ID: 2169 and disk: 152.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-9djejqwr v1 with job batch system ID: 2170 and disk: 152.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-2k9gv12r v1 with job batch system ID: 2171 and disk: 154.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-j0l8mn2b v1 with job batch system ID: 2172 and disk: 155.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ea23y8y8 v1 with job batch system ID: 2173 and disk: 146.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-57wwfo6e v1 with job batch system ID: 2174 and disk: 156.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_aj7ea40 v1 with job batch system ID: 2175 and disk: 161.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-5b3irkfb v1 with job batch system ID: 2176 and disk: 159.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-v272ocoo v1 with job batch system ID: 2177 and disk: 155.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-a4fk0czd v1 with job batch system ID: 2178 and disk: 153.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-i8jldb3l v1 with job batch system ID: 2179 and disk: 154.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-m1i3ruxe v1 with job batch system ID: 2180 and disk: 152.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-ukvybl93 v1 with job batch system ID: 2181 and disk: 153.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-3dc5nnqo v1 with job batch system ID: 2182 and disk: 160.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-z5ktta56 v1 with job batch system ID: 2183 and disk: 159.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-dcm8qagb v1 with job batch system ID: 2184 and disk: 144.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-09nrw72k v1 with job batch system ID: 2185 and disk: 158.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7dsrcxjs v1 with job batch system ID: 2186 and disk: 151.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-nnu2_tq7 v1 with job batch system ID: 2187 and disk: 151.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-hnhz8n2g v1 with job batch system ID: 2188 and disk: 154.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-3tcq74w6 v1 with job batch system ID: 2189 and disk: 165.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-79tq9w42 v1 with job batch system ID: 2190 and disk: 153.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-iyuxbowy v1 with job batch system ID: 2191 and disk: 158.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-uaa_7iso v1 with job batch system ID: 2192 and disk: 143.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/f/instance-w1rxt_13 v1 with job batch system ID: 2193 and disk: 150.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-xlbm099g v1 with job batch system ID: 2194 and disk: 439.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-_ijidrwk v1 with job batch system ID: 2195 and disk: 447.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ob_v191v v1 with job batch system ID: 2196 and disk: 441.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-soqiu3iw v1 with job batch system ID: 2197 and disk: 440.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-jaex4kt7 v1 with job batch system ID: 2198 and disk: 440.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/y/instance-68upe3zp v1 with job batch system ID: 2199 and disk: 439.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-tn6xpd74 v1 with job batch system ID: 2200 and disk: 438.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-hmq701ax v1 with job batch system ID: 2201 and disk: 437.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-gi6949w9 v1 with job batch system ID: 2202 and disk: 439.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-lbpvchnp v1 with job batch system ID: 2203 and disk: 438.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1jbw6m5e v1 with job batch system ID: 2204 and disk: 440.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-mrspz8uf v1 with job batch system ID: 2205 and disk: 441.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-gigozkw4 v1 with job batch system ID: 2206 and disk: 441.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-0iurvo90 v1 with job batch system ID: 2207 and disk: 440.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-xb38hhjt v1 with job batch system ID: 2208 and disk: 439.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-lh3obn3s v1 with job batch system ID: 2209 and disk: 440.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-dwedpj7b v1 with job batch system ID: 2210 and disk: 439.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-biv1xuew v1 with job batch system ID: 2211 and disk: 440.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-g03jnhjo v1 with job batch system ID: 2212 and disk: 442.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-d389dc42 v1 with job batch system ID: 2213 and disk: 438.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4krpdk4_ v1 with job batch system ID: 2214 and disk: 440.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-un4awa9z v1 with job batch system ID: 2215 and disk: 437.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-thhxx3r7 v1 with job batch system ID: 2216 and disk: 435.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-adeq4qjn v1 with job batch system ID: 2217 and disk: 438.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-zgaqnxc5 v1 with job batch system ID: 2218 and disk: 439.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-jc9e8wio v1 with job batch system ID: 2219 and disk: 442.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-bv5qa5a2 v1 with job batch system ID: 2220 and disk: 440.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-xj9x3k4s v1 with job batch system ID: 2221 and disk: 440.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-r67khus0 v1 with job batch system ID: 2222 and disk: 439.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-yopjedv7 v1 with job batch system ID: 2223 and disk: 435.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-ut236dme v1 with job batch system ID: 2224 and disk: 440.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-x0kn9wam v1 with job batch system ID: 2225 and disk: 440.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-wnn6qnt_ v1 with job batch system ID: 2226 and disk: 440.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-8zzap5w9 v1 with job batch system ID: 2227 and disk: 441.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-j_1bvb6c v1 with job batch system ID: 2228 and disk: 440.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-rlwvzagr v1 with job batch system ID: 2229 and disk: 439.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-iqejivhy v1 with job batch system ID: 2230 and disk: 432.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-q22rtv2c v1 with job batch system ID: 2231 and disk: 439.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-olhiboap v1 with job batch system ID: 2232 and disk: 439.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-krypznz_ v1 with job batch system ID: 2233 and disk: 439.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1tn_f3x4 v1 with job batch system ID: 2234 and disk: 438.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-qzqfdpjb v1 with job batch system ID: 2235 and disk: 438.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-zlcq7apz v1 with job batch system ID: 2236 and disk: 439.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-hhffk3_z v1 with job batch system ID: 2237 and disk: 440.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-8pov04oe v1 with job batch system ID: 2238 and disk: 441.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-n9ruwaik v1 with job batch system ID: 2239 and disk: 439.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-5c2wymgw v1 with job batch system ID: 2240 and disk: 440.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-ajjsb6r0 v1 with job batch system ID: 2241 and disk: 441.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-a86kshep v1 with job batch system ID: 2242 and disk: 439.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-qmd_rbys v1 with job batch system ID: 2243 and disk: 433.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-h51tbozn v1 with job batch system ID: 2244 and disk: 436.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-an4p7t3v v1 with job batch system ID: 2245 and disk: 442.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-i03y3ik2 v1 with job batch system ID: 2246 and disk: 440.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7f7b4p25 v1 with job batch system ID: 2247 and disk: 441.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-x5r1ry1p v1 with job batch system ID: 2248 and disk: 432.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-zfw4yt5n v1 with job batch system ID: 2249 and disk: 452.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-jg8hdk12 v1 with job batch system ID: 2250 and disk: 437.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-r1_0kxa2 v1 with job batch system ID: 2251 and disk: 439.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-i821spp7 v1 with job batch system ID: 2252 and disk: 439.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-0mflgwku v1 with job batch system ID: 2253 and disk: 441.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-i39364yy v1 with job batch system ID: 2254 and disk: 438.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-gs51e1_c v1 with job batch system ID: 2255 and disk: 440.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-decjbkle v1 with job batch system ID: 2256 and disk: 440.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-fif2kbu7 v1 with job batch system ID: 2257 and disk: 440.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-3i5thojl v1 with job batch system ID: 2258 and disk: 440.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-dc7gt84i v1 with job batch system ID: 2259 and disk: 444.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-zl8mzmkg v1 with job batch system ID: 2260 and disk: 436.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-po2_zhw8 v1 with job batch system ID: 2261 and disk: 441.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-neyj_zh5 v1 with job batch system ID: 2262 and disk: 440.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ry27y0ld v1 with job batch system ID: 2263 and disk: 440.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-a58rb3rk v1 with job batch system ID: 2264 and disk: 439.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-v8onrkms v1 with job batch system ID: 2265 and disk: 441.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-epke5fu7 v1 with job batch system ID: 2266 and disk: 443.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-jwivcc_e v1 with job batch system ID: 2267 and disk: 440.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-pbr0slde v1 with job batch system ID: 2268 and disk: 438.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-satmaee0 v1 with job batch system ID: 2269 and disk: 439.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-yilun3o5 v1 with job batch system ID: 2270 and disk: 438.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-oe4b_jt9 v1 with job batch system ID: 2271 and disk: 434.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-l52egk_1 v1 with job batch system ID: 2272 and disk: 440.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-kgx2jbvl v1 with job batch system ID: 2273 and disk: 440.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-ff3s8qun v1 with job batch system ID: 2274 and disk: 442.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-0z_7gmbu v1 with job batch system ID: 2275 and disk: 438.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-oq04qcxq v1 with job batch system ID: 2276 and disk: 438.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-kwd_9neu v1 with job batch system ID: 2277 and disk: 435.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-xd_7hd4g v1 with job batch system ID: 2278 and disk: 440.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-c3kcz8u4 v1 with job batch system ID: 2279 and disk: 437.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-irlftw5x v1 with job batch system ID: 2280 and disk: 440.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-tqbraluv v1 with job batch system ID: 2281 and disk: 440.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_33tmdkm v1 with job batch system ID: 2282 and disk: 441.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-e6gtt2h3 v1 with job batch system ID: 2283 and disk: 437.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-xq2qbzjw v1 with job batch system ID: 2284 and disk: 442.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-vt1f02go v1 with job batch system ID: 2285 and disk: 328.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-it70wc4m v1 with job batch system ID: 2286 and disk: 326.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-qwbcarm0 v1 with job batch system ID: 2287 and disk: 325.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-rivvw4r7 v1 with job batch system ID: 2288 and disk: 328.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-8t12vuh5 v1 with job batch system ID: 2289 and disk: 328.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-jl6piayg v1 with job batch system ID: 2290 and disk: 329.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-lomrqb2y v1 with job batch system ID: 2291 and disk: 329.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-eyrj311o v1 with job batch system ID: 2292 and disk: 328.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-12koptv5 v1 with job batch system ID: 2293 and disk: 329.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-byc0w7mv v1 with job batch system ID: 2294 and disk: 328.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-ngfh68pf v1 with job batch system ID: 2295 and disk: 329.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-d038gnn5 v1 with job batch system ID: 2296 and disk: 327.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-5qafaxkl v1 with job batch system ID: 2297 and disk: 330.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-dtsdlm72 v1 with job batch system ID: 2298 and disk: 325.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-co7e_x2e v1 with job batch system ID: 2299 and disk: 329.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-2i92k22f v1 with job batch system ID: 2300 and disk: 327.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4zx8hxjf v1 with job batch system ID: 2301 and disk: 328.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-hjfe7v5f v1 with job batch system ID: 2302 and disk: 327.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-xwenx7di v1 with job batch system ID: 2303 and disk: 326.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-sr23gxx5 v1 with job batch system ID: 2304 and disk: 326.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-s7rodfwa v1 with job batch system ID: 2305 and disk: 328.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-bu1eqdr8 v1 with job batch system ID: 2306 and disk: 327.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-k27eqokv v1 with job batch system ID: 2307 and disk: 328.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-mgz2fsl5 v1 with job batch system ID: 2308 and disk: 325.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-66dkre8v v1 with job batch system ID: 2309 and disk: 330.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-vgsajb49 v1 with job batch system ID: 2310 and disk: 328.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-ip33dwhj v1 with job batch system ID: 2311 and disk: 330.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-mjb8y6qf v1 with job batch system ID: 2312 and disk: 328.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-oly3qp4u v1 with job batch system ID: 2313 and disk: 325.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-8squc0th v1 with job batch system ID: 2314 and disk: 329.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-ln4a73r7 v1 with job batch system ID: 2315 and disk: 328.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-2xx5oioi v1 with job batch system ID: 2316 and disk: 326.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-wvrqqv_s v1 with job batch system ID: 2317 and disk: 327.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-flvjzj12 v1 with job batch system ID: 2318 and disk: 328.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-zdaj0zv2 v1 with job batch system ID: 2319 and disk: 328.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-t9k49r4c v1 with job batch system ID: 2320 and disk: 330.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-z7rk3iqo v1 with job batch system ID: 2321 and disk: 328.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-z4g_c8w_ v1 with job batch system ID: 2322 and disk: 343.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-c6uwr7vt v1 with job batch system ID: 2323 and disk: 330.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-096xmeq3 v1 with job batch system ID: 2324 and disk: 329.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-9smuw_0t v1 with job batch system ID: 2325 and disk: 330.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-94sbku1a v1 with job batch system ID: 2326 and disk: 328.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-fymqw4qa v1 with job batch system ID: 2327 and disk: 328.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_6fey24i v1 with job batch system ID: 2328 and disk: 327.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-5v8iw1r2 v1 with job batch system ID: 2329 and disk: 327.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/e/instance-ibtikzxt v1 with job batch system ID: 2330 and disk: 324.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-9fwicaew v1 with job batch system ID: 2331 and disk: 330.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-xz8rhb9j v1 with job batch system ID: 2332 and disk: 328.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7jyyv50c v1 with job batch system ID: 2333 and disk: 330.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-l20jf8ns v1 with job batch system ID: 2334 and disk: 328.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-w8f8xfvk v1 with job batch system ID: 2335 and disk: 326.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-lb2f5_iw v1 with job batch system ID: 2336 and disk: 327.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-k27oei48 v1 with job batch system ID: 2337 and disk: 328.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-fy318mt1 v1 with job batch system ID: 2338 and disk: 327.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-j_yzac18 v1 with job batch system ID: 2339 and disk: 327.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/o/instance-kigvje_q v1 with job batch system ID: 2340 and disk: 328.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-231_1hlz v1 with job batch system ID: 2341 and disk: 327.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-rckxtyog v1 with job batch system ID: 2342 and disk: 328.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-h21t0ogq v1 with job batch system ID: 2343 and disk: 328.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-3u66pvrc v1 with job batch system ID: 2344 and disk: 328.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-6h7gryb5 v1 with job batch system ID: 2345 and disk: 328.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ku0egdu_ v1 with job batch system ID: 2346 and disk: 328.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-uli450ym v1 with job batch system ID: 2347 and disk: 326.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-lg7su9xp v1 with job batch system ID: 2348 and disk: 329.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-rfipnevh v1 with job batch system ID: 2349 and disk: 326.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-h80fhyn_ v1 with job batch system ID: 2350 and disk: 329.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-n5pip07f v1 with job batch system ID: 2351 and disk: 328.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-sdm_a8kj v1 with job batch system ID: 2352 and disk: 337.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-aavw7k4b v1 with job batch system ID: 2353 and disk: 328.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-mt7hcmmz v1 with job batch system ID: 2354 and disk: 329.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-qx2a9567 v1 with job batch system ID: 2355 and disk: 328.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-tlofmo2x v1 with job batch system ID: 2356 and disk: 328.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/m/instance-5pwljun9 v1 with job batch system ID: 2357 and disk: 328.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-j51f_3oo v1 with job batch system ID: 2358 and disk: 326.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-hfpuc2at v1 with job batch system ID: 2359 and disk: 324.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-vgy1bxx6 v1 with job batch system ID: 2360 and disk: 328.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-qf0eapvv v1 with job batch system ID: 2361 and disk: 327.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-3xl_f_ie v1 with job batch system ID: 2362 and disk: 326.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-s5kdmibw v1 with job batch system ID: 2363 and disk: 327.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-dlkbk5tf v1 with job batch system ID: 2364 and disk: 328.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-0ofbr7uh v1 with job batch system ID: 2365 and disk: 329.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-hcb6pcfp v1 with job batch system ID: 2366 and disk: 328.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1robp7jp v1 with job batch system ID: 2367 and disk: 327.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-x3p0hb1p v1 with job batch system ID: 2368 and disk: 329.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-lfgddbd_ v1 with job batch system ID: 2369 and disk: 327.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ue9hnr2t v1 with job batch system ID: 2370 and disk: 327.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-2ol_q0jn v1 with job batch system ID: 2371 and disk: 329.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-xgyexln3 v1 with job batch system ID: 2372 and disk: 326.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-89lblpa8 v1 with job batch system ID: 2373 and disk: 328.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-zignl4s_ v1 with job batch system ID: 2374 and disk: 328.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-3oosr96s v1 with job batch system ID: 2375 and disk: 326.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-z5a6y3m8 v1 with job batch system ID: 2376 and disk: 311.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/n/instance-he0zmut8 v1 with job batch system ID: 2377 and disk: 310.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-uu2x4ggj v1 with job batch system ID: 2378 and disk: 319.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-765cz423 v1 with job batch system ID: 2379 and disk: 311.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-p0ha8w_a v1 with job batch system ID: 2380 and disk: 311.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-dx02jtjp v1 with job batch system ID: 2381 and disk: 311.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-gbkkdvqi v1 with job batch system ID: 2382 and disk: 310.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-y99_bw3q v1 with job batch system ID: 2383 and disk: 310.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-lqouo6zj v1 with job batch system ID: 2384 and disk: 310.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-5rr0kb8m v1 with job batch system ID: 2385 and disk: 310.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-q7ca0mc4 v1 with job batch system ID: 2386 and disk: 309.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-25kvwahp v1 with job batch system ID: 2387 and disk: 312.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-84eky9i6 v1 with job batch system ID: 2388 and disk: 311.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-re5b_b7p v1 with job batch system ID: 2389 and disk: 310.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-fjndy888 v1 with job batch system ID: 2390 and disk: 310.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-8rv9qtsl v1 with job batch system ID: 2391 and disk: 323.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-p_8ojl6w v1 with job batch system ID: 2392 and disk: 310.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-4q0ie_wr v1 with job batch system ID: 2393 and disk: 310.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-plyjvyzc v1 with job batch system ID: 2394 and disk: 311.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-s_5tr0cs v1 with job batch system ID: 2395 and disk: 311.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-iu2ge0d3 v1 with job batch system ID: 2396 and disk: 310.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-elekhwcy v1 with job batch system ID: 2397 and disk: 310.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-rzqbw22i v1 with job batch system ID: 2398 and disk: 310.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-b35v_tjf v1 with job batch system ID: 2399 and disk: 310.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-jzd7qxhm v1 with job batch system ID: 2400 and disk: 311.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-czge_ev3 v1 with job batch system ID: 2401 and disk: 310.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-yovu1sh5 v1 with job batch system ID: 2402 and disk: 312.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-t3zthq73 v1 with job batch system ID: 2403 and disk: 309.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-heijtpgz v1 with job batch system ID: 2404 and disk: 310.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/u/instance-5gukn2af v1 with job batch system ID: 2405 and disk: 311.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-nh2cqx_9 v1 with job batch system ID: 2406 and disk: 310.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-holj7zrd v1 with job batch system ID: 2407 and disk: 310.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-dsy6f2_o v1 with job batch system ID: 2408 and disk: 310.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-a3mabo63 v1 with job batch system ID: 2409 and disk: 311.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-6lgi5wc1 v1 with job batch system ID: 2410 and disk: 310.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-oaqkd_dz v1 with job batch system ID: 2411 and disk: 310.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ewvc4oka v1 with job batch system ID: 2412 and disk: 310.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-6q0kbey3 v1 with job batch system ID: 2413 and disk: 311.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-n12d9_mi v1 with job batch system ID: 2414 and disk: 310.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-hiw7nlkc v1 with job batch system ID: 2415 and disk: 310.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-l518zhv5 v1 with job batch system ID: 2416 and disk: 311.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-aeji92ro v1 with job batch system ID: 2417 and disk: 311.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-23a9kj5p v1 with job batch system ID: 2418 and disk: 311.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-79kevgzv v1 with job batch system ID: 2419 and disk: 310.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-ka445s_3 v1 with job batch system ID: 2420 and disk: 310.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7_cgvygd v1 with job batch system ID: 2421 and disk: 311.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/3/instance-dacea1n4 v1 with job batch system ID: 2422 and disk: 312.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-3yit8oa0 v1 with job batch system ID: 2423 and disk: 310.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-awu30ct9 v1 with job batch system ID: 2424 and disk: 311.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/9/instance-_vrz6vsp v1 with job batch system ID: 2425 and disk: 310.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/q/instance-3bw9j80f v1 with job batch system ID: 2426 and disk: 311.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-cb73i3f0 v1 with job batch system ID: 2427 and disk: 311.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-bkcvx73h v1 with job batch system ID: 2428 and disk: 311.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-ngdo8dbj v1 with job batch system ID: 2429 and disk: 310.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7yl72lbn v1 with job batch system ID: 2430 and disk: 310.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-52q3o4c6 v1 with job batch system ID: 2431 and disk: 311.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-vnq891nn v1 with job batch system ID: 2432 and disk: 315.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-tfltej6c v1 with job batch system ID: 2433 and disk: 311.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-l52f_58n v1 with job batch system ID: 2434 and disk: 310.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-a7dwrtk6 v1 with job batch system ID: 2435 and disk: 320.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-6rzrchz3 v1 with job batch system ID: 2436 and disk: 310.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-u_dascbe v1 with job batch system ID: 2437 and disk: 311.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-zf23zysb v1 with job batch system ID: 2438 and disk: 314.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-2b_krj3v v1 with job batch system ID: 2439 and disk: 310.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-rcb3o068 v1 with job batch system ID: 2440 and disk: 310.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-jtiwcyvo v1 with job batch system ID: 2441 and disk: 311.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-3lzh_z2k v1 with job batch system ID: 2442 and disk: 310.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-q7zg3rkv v1 with job batch system ID: 2443 and disk: 311.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-e3xiv79s v1 with job batch system ID: 2444 and disk: 311.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-by65t4pf v1 with job batch system ID: 2445 and disk: 311.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/0/instance-rl19f5vn v1 with job batch system ID: 2446 and disk: 311.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-q68qkg2n v1 with job batch system ID: 2447 and disk: 311.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ls5gicpo v1 with job batch system ID: 2448 and disk: 310.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-evywi9hx v1 with job batch system ID: 2449 and disk: 311.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1y0pasg9 v1 with job batch system ID: 2450 and disk: 310.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-q3ufd2lr v1 with job batch system ID: 2451 and disk: 310.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/j/instance-ydvxje7w v1 with job batch system ID: 2452 and disk: 310.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-p62udxg2 v1 with job batch system ID: 2453 and disk: 309.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-ycflufw7 v1 with job batch system ID: 2454 and disk: 310.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-98xpvlhf v1 with job batch system ID: 2455 and disk: 309.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-3mkdkkhd v1 with job batch system ID: 2456 and disk: 311.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-5vpvu_iz v1 with job batch system ID: 2457 and disk: 312.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-3xg07wzp v1 with job batch system ID: 2458 and disk: 318.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-_8yjup8b v1 with job batch system ID: 2459 and disk: 311.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-b7fxmr_h v1 with job batch system ID: 2460 and disk: 311.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-4ldnd0qk v1 with job batch system ID: 2461 and disk: 310.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-v_9sbmc_ v1 with job batch system ID: 2462 and disk: 311.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-vs8ggnzw v1 with job batch system ID: 2463 and disk: 310.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-cg7tgod6 v1 with job batch system ID: 2464 and disk: 311.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-sucv4w8y v1 with job batch system ID: 2465 and disk: 311.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-wjo3u9j8 v1 with job batch system ID: 2466 and disk: 311.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-euuq_jj8 v1 with job batch system ID: 2467 and disk: 155.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/a/instance-x_v_39v9 v1 with job batch system ID: 2468 and disk: 151.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-xc33baid v1 with job batch system ID: 2469 and disk: 148.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7ord7c9a v1 with job batch system ID: 2470 and disk: 146.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-md94f802 v1 with job batch system ID: 2471 and disk: 153.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-wjyzscem v1 with job batch system ID: 2472 and disk: 158.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-o3d4atew v1 with job batch system ID: 2473 and disk: 151.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-p1cyldex v1 with job batch system ID: 2474 and disk: 151.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_ze4yf6p v1 with job batch system ID: 2475 and disk: 153.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-m9sekvdi v1 with job batch system ID: 2476 and disk: 150.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ho8srjqv v1 with job batch system ID: 2477 and disk: 144.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-gma90hj0 v1 with job batch system ID: 2478 and disk: 150.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-jphgz3x4 v1 with job batch system ID: 2479 and disk: 147.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-drbra8bb v1 with job batch system ID: 2480 and disk: 150.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/w/instance-gth5f5zn v1 with job batch system ID: 2481 and disk: 153.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-6u5s9wd_ v1 with job batch system ID: 2482 and disk: 151.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-p8_9hlko v1 with job batch system ID: 2483 and disk: 147.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-54u0zf24 v1 with job batch system ID: 2484 and disk: 151.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-32hxma0p v1 with job batch system ID: 2485 and disk: 150.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-dsw0yzzs v1 with job batch system ID: 2486 and disk: 158.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-qs0zde59 v1 with job batch system ID: 2487 and disk: 152.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-j4ytktc6 v1 with job batch system ID: 2488 and disk: 151.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ntow1qz8 v1 with job batch system ID: 2489 and disk: 151.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ro6rkezz v1 with job batch system ID: 2490 and disk: 149.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_tsa75vk v1 with job batch system ID: 2491 and disk: 153.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-oa_ndoto v1 with job batch system ID: 2492 and disk: 150.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-a17ic8nw v1 with job batch system ID: 2493 and disk: 151.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-pyxe7ujo v1 with job batch system ID: 2494 and disk: 153.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/i/instance-4ggo2ld2 v1 with job batch system ID: 2495 and disk: 152.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-qq67bamn v1 with job batch system ID: 2496 and disk: 147.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-g9jb6dgf v1 with job batch system ID: 2497 and disk: 150.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-34jltifo v1 with job batch system ID: 2498 and disk: 152.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-6lu6hmh4 v1 with job batch system ID: 2499 and disk: 154.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-xgu7kwbo v1 with job batch system ID: 2500 and disk: 153.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-y2ydrlsv v1 with job batch system ID: 2501 and disk: 153.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-bajp2ns6 v1 with job batch system ID: 2502 and disk: 151.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-crnrctkn v1 with job batch system ID: 2503 and disk: 148.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-966743_1 v1 with job batch system ID: 2504 and disk: 152.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-vuhlv_sj v1 with job batch system ID: 2505 and disk: 150.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-b5coev13 v1 with job batch system ID: 2506 and disk: 150.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-ylghexpb v1 with job batch system ID: 2507 and disk: 161.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-j9u53o8t v1 with job batch system ID: 2508 and disk: 148.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-8olv1inp v1 with job batch system ID: 2509 and disk: 153.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-yq28w4z4 v1 with job batch system ID: 2510 and disk: 151.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1mq8pg90 v1 with job batch system ID: 2511 and disk: 150.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-eyrfjsqu v1 with job batch system ID: 2512 and disk: 141.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/x/instance-1o9oa284 v1 with job batch system ID: 2513 and disk: 150.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ra8lkzi8 v1 with job batch system ID: 2514 and disk: 147.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-43e62rsu v1 with job batch system ID: 2515 and disk: 154.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-twkalt2s v1 with job batch system ID: 2516 and disk: 151.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1858__um v1 with job batch system ID: 2517 and disk: 152.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-s33jmbhp v1 with job batch system ID: 2518 and disk: 154.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-z9mrcb69 v1 with job batch system ID: 2519 and disk: 150.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-fjcy50lj v1 with job batch system ID: 2520 and disk: 150.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-qoaknf68 v1 with job batch system ID: 2521 and disk: 152.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-5702bb41 v1 with job batch system ID: 2522 and disk: 153.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/l/instance-i0o6gkk2 v1 with job batch system ID: 2523 and disk: 151.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-as9jmkem v1 with job batch system ID: 2524 and disk: 148.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-nr4q_uc4 v1 with job batch system ID: 2525 and disk: 150.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-vlukhau8 v1 with job batch system ID: 2526 and disk: 146.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-i99ckm15 v1 with job batch system ID: 2527 and disk: 154.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-cmpit14k v1 with job batch system ID: 2528 and disk: 152.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-isuc8gcr v1 with job batch system ID: 2529 and disk: 150.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-iiwn0jnh v1 with job batch system ID: 2530 and disk: 150.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-rjl81ydu v1 with job batch system ID: 2531 and disk: 151.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/2/instance-nrhdir0w v1 with job batch system ID: 2532 and disk: 152.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/5/instance-tlc6fqoc v1 with job batch system ID: 2533 and disk: 160.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/1/instance-2segssub v1 with job batch system ID: 2534 and disk: 151.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/b/instance-4bug4yy9 v1 with job batch system ID: 2535 and disk: 151.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-xbyra_92 v1 with job batch system ID: 2536 and disk: 148.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-0d5fwmb7 v1 with job batch system ID: 2537 and disk: 150.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-kvdfrbb1 v1 with job batch system ID: 2538 and disk: 155.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/z/instance-7mmyzqqj v1 with job batch system ID: 2539 and disk: 150.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-yl6pdnli v1 with job batch system ID: 2540 and disk: 152.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-krm8xs0p v1 with job batch system ID: 2541 and disk: 154.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/s/instance-v8o3231a v1 with job batch system ID: 2542 and disk: 147.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-wm4vlwce v1 with job batch system ID: 2543 and disk: 151.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-wg4stv0p v1 with job batch system ID: 2544 and disk: 155.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-56wkzk87 v1 with job batch system ID: 2545 and disk: 148.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ju9h621x v1 with job batch system ID: 2546 and disk: 150.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-57jkcbat v1 with job batch system ID: 2547 and disk: 154.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-5ro6cdt0 v1 with job batch system ID: 2548 and disk: 156.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-eol_5t1y v1 with job batch system ID: 2549 and disk: 149.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7l514lax v1 with job batch system ID: 2550 and disk: 153.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-rcd6y7v6 v1 with job batch system ID: 2551 and disk: 150.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-me3y2hsy v1 with job batch system ID: 2552 and disk: 148.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-xfax7tty v1 with job batch system ID: 2553 and disk: 145.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-hxce91nv v1 with job batch system ID: 2554 and disk: 149.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/h/instance-y4sor9ym v1 with job batch system ID: 2555 and disk: 168.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/t/instance-9wiowne7 v1 with job batch system ID: 2556 and disk: 155.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-148ms8go v1 with job batch system ID: 2557 and disk: 152.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-fdnqm1y9 v1 with job batch system ID: 2558 and disk: 183.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-kzmcwki8 v1 with job batch system ID: 2559 and disk: 180.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-bqjnwbju v1 with job batch system ID: 2560 and disk: 184.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/2/instance-w34fx7xf v1 with job batch system ID: 2561 and disk: 184.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-3jk15eh_ v1 with job batch system ID: 2562 and disk: 176.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-gohs6tli v1 with job batch system ID: 2563 and disk: 185.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1pcecqdu v1 with job batch system ID: 2564 and disk: 177.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_e8olpt2 v1 with job batch system ID: 2565 and disk: 185.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-9hia78ng v1 with job batch system ID: 2566 and disk: 176.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-q67m0e5d v1 with job batch system ID: 2567 and disk: 182.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-fqevp5zf v1 with job batch system ID: 2568 and disk: 178.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/g/instance-t0yav6p9 v1 with job batch system ID: 2569 and disk: 188.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-3dvabe31 v1 with job batch system ID: 2570 and disk: 176.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-o5_ggrdx v1 with job batch system ID: 2571 and disk: 182.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-12syh6mf v1 with job batch system ID: 2572 and disk: 177.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-e9wu10ac v1 with job batch system ID: 2573 and disk: 176.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ol27jlsk v1 with job batch system ID: 2574 and disk: 177.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-i7v5jv5q v1 with job batch system ID: 2575 and disk: 176.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-56cuysi0 v1 with job batch system ID: 2576 and disk: 183.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-r_sj21yj v1 with job batch system ID: 2577 and disk: 181.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-_v53vov0 v1 with job batch system ID: 2578 and disk: 176.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-pp_o3h9l v1 with job batch system ID: 2579 and disk: 178.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-caq9tzki v1 with job batch system ID: 2580 and disk: 176.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ww2oybj2 v1 with job batch system ID: 2581 and disk: 176.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-jbdmeqta v1 with job batch system ID: 2582 and disk: 176.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/c/instance-iefaljg2 v1 with job batch system ID: 2583 and disk: 176.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-3etmf0b_ v1 with job batch system ID: 2584 and disk: 179.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/v/instance-x0r1vuvs v1 with job batch system ID: 2585 and disk: 189.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ywqsqkcp v1 with job batch system ID: 2586 and disk: 177.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/4/instance-y_9dtgth v1 with job batch system ID: 2587 and disk: 184.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-pyolawni v1 with job batch system ID: 2588 and disk: 178.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-nr714w2x v1 with job batch system ID: 2589 and disk: 186.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-vwqflp86 v1 with job batch system ID: 2590 and disk: 177.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-04dp9x1t v1 with job batch system ID: 2591 and disk: 178.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/8/instance-w2gsde_0 v1 with job batch system ID: 2592 and disk: 176.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-40q4qeib v1 with job batch system ID: 2593 and disk: 176.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ppneas6k v1 with job batch system ID: 2594 and disk: 178.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-gi9i2o_1 v1 with job batch system ID: 2595 and disk: 176.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-9jp8g44z v1 with job batch system ID: 2596 and disk: 189.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-c1uenf_t v1 with job batch system ID: 2597 and disk: 176.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ywg_na8s v1 with job batch system ID: 2598 and disk: 181.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-09g5813w v1 with job batch system ID: 2599 and disk: 176.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-scqef7j7 v1 with job batch system ID: 2600 and disk: 177.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-caiwbpmk v1 with job batch system ID: 2601 and disk: 178.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/p/instance-6q1_kjsv v1 with job batch system ID: 2602 and disk: 176.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4nxesfp3 v1 with job batch system ID: 2603 and disk: 179.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ygrb18ji v1 with job batch system ID: 2604 and disk: 180.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-tu3rxtk0 v1 with job batch system ID: 2605 and disk: 177.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-8vlhpyvs v1 with job batch system ID: 2606 and disk: 176.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ror2vjk1 v1 with job batch system ID: 2607 and disk: 176.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-y5r1iwqy v1 with job batch system ID: 2608 and disk: 175.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ofgwky9o v1 with job batch system ID: 2609 and disk: 185.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/7/instance-10raqlgw v1 with job batch system ID: 2610 and disk: 176.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-5vru8e3v v1 with job batch system ID: 2611 and disk: 176.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-h4ruzju8 v1 with job batch system ID: 2612 and disk: 180.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-kpog6g1t v1 with job batch system ID: 2613 and disk: 176.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-bf38atcy v1 with job batch system ID: 2614 and disk: 176.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-eo94csp3 v1 with job batch system ID: 2615 and disk: 177.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-bhphpexb v1 with job batch system ID: 2616 and disk: 176.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-dz9r8me7 v1 with job batch system ID: 2617 and disk: 185.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-95taj93_ v1 with job batch system ID: 2618 and disk: 176.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-qsn346a_ v1 with job batch system ID: 2619 and disk: 185.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-r9uplvrh v1 with job batch system ID: 2620 and disk: 179.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-bh9du510 v1 with job batch system ID: 2621 and disk: 184.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/k/instance-4e4fn5v8 v1 with job batch system ID: 2622 and disk: 177.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-708v1mby v1 with job batch system ID: 2623 and disk: 181.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/r/instance-98g4ium2 v1 with job batch system ID: 2624 and disk: 177.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-zfc6lsgi v1 with job batch system ID: 2625 and disk: 176.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-350_ekq0 v1 with job batch system ID: 2626 and disk: 177.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/d/instance-qtcb4bzj v1 with job batch system ID: 2627 and disk: 195.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-4ppzkvm7 v1 with job batch system ID: 2628 and disk: 179.9 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-llkyxlu1 v1 with job batch system ID: 2629 and disk: 176.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-9swwz37g v1 with job batch system ID: 2630 and disk: 176.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-9js0wgy0 v1 with job batch system ID: 2631 and disk: 176.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-xbxgtunw v1 with job batch system ID: 2632 and disk: 181.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ru3z3jce v1 with job batch system ID: 2633 and disk: 185.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-0vb3nddf v1 with job batch system ID: 2634 and disk: 176.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-1hr5n2sw v1 with job batch system ID: 2635 and disk: 185.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-zp4ly9zk v1 with job batch system ID: 2636 and disk: 176.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-biv1ewt8 v1 with job batch system ID: 2637 and disk: 177.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-njjqroml v1 with job batch system ID: 2638 and disk: 186.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/6/instance-99wp8c48 v1 with job batch system ID: 2639 and disk: 176.2 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-y28516me v1 with job batch system ID: 2640 and disk: 176.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-7un8b96g v1 with job batch system ID: 2641 and disk: 185.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-gklzchit v1 with job batch system ID: 2642 and disk: 177.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-aouwa_k8 v1 with job batch system ID: 2643 and disk: 179.4 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-i0i84p0r v1 with job batch system ID: 2644 and disk: 181.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-ghvckumw v1 with job batch system ID: 2645 and disk: 176.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-jokkheu1 v1 with job batch system ID: 2646 and disk: 184.5 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-t272bjfn v1 with job batch system ID: 2647 and disk: 178.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'sanitize_fasta_header' kind-sanitize_fasta_header/instance-0h31f0bg v1 with job batch system ID: 2648 and disk: 177.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 13:43:27.312384: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1294/b3c2/tmprbc88wv3/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p"
2023-07-05 13:43:27.314964: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a6d0/378c/tmp9brv711d/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p"
2023-07-05 13:43:27.315380: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/0827/0819/tmp0zuva0s6/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
2023-07-05 13:43:27.362395: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ce4e/c2c8/tmp25db11fb/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-05 13:43:27.386302: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9c6b/f6de/tmp0ptxo7cm/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p"
2023-07-05 13:43:27.437731: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3ed5/a901/tmpvcdtxmp7/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p"
2023-07-05 13:43:27.461518: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e434/9808/tmpdvjgf05s/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p"
2023-07-05 13:43:27.496467: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/31a5/9946/tmproomog23/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p"
2023-07-05 13:43:27.568141: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d1cd/aa0a/tmpmn0r458m/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:43:27.618785: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/aebc/f5dd/tmp_j4sd1xz/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p"
Estimating cactus_consolidated(chrM) memory as 3.7 Gi from 45 sequences with total-sequence-size 736.2 Ki and paf-size 17299 using <conslidatedMemory> configuration settings
2023-07-05 13:43:27.741414: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7261/45f6/tmpyq46i431/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p"
2023-07-05 13:43:27.783119: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7ee4/5fc4/tmpv66t9z5s/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p"
2023-07-05 13:43:27.792800: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9176/b3da/tmpco9kzzvt/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p"
Estimating cactus_consolidated(chrEBV) memory as 11.1 Gi from 5 sequences with total-sequence-size 7.1 Mi and paf-size 53008 using <conslidatedMemory> configuration settings
Estimating cactus_consolidated(chrY) memory as 94.7 Gi from 22 sequences with total-sequence-size 581.4 Mi and paf-size 4116478 using <conslidatedMemory> configuration settings
2023-07-05 13:43:27.948257: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/86f6/0d47/tmp7u4xtl4d/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p"
2023-07-05 13:43:27.967655: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fac/09ce/tmp2aqx9xsg/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
Estimating cactus_consolidated(chrOther) memory as 55.1 Gi from 57 sequences with total-sequence-size 43.8 Mi and paf-size 1700941 using <conslidatedMemory> configuration settings
2023-07-05 13:43:28.050240: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1583/e45b/tmpdoazx2yv/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p"
2023-07-05 13:43:28.120738: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/0827/0819/tmp0zuva0s6/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p'" in 0.8045 seconds and 73.6 Mi memory
2023-07-05 13:43:28.125207: Running the command: "cactus_analyseAssembly HG03486.1.sanitized.fa"
2023-07-05 13:43:28.211753: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1294/b3c2/tmprbc88wv3/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p'" in 0.8986 seconds and 153.9 Mi memory
2023-07-05 13:43:28.216458: Running the command: "cactus_analyseAssembly HG01952.2.sanitized.fa"
2023-07-05 13:43:28.225088: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ce4e/c2c8/tmp25db11fb/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p'" in 0.8618 seconds and 154.0 Mi memory
2023-07-05 13:43:28.230322: Running the command: "cactus_analyseAssembly HG01175.2.sanitized.fa"
2023-07-05 13:43:28.231451: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a6d0/378c/tmp9brv711d/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p'" in 0.9157 seconds and 153.9 Mi memory
2023-07-05 13:43:28.237006: Running the command: "cactus_analyseAssembly HG02622.2.sanitized.fa"
2023-07-05 13:43:28.245489: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3ed5/a901/tmpvcdtxmp7/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 0.8067 seconds and 69.2 Mi memory
2023-07-05 13:43:28.250223: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-05 13:43:28.311641: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e434/9808/tmpdvjgf05s/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p'" in 0.8493 seconds and 51.9 Mi memory
2023-07-05 13:43:28.316170: Running the command: "cactus_analyseAssembly HG02886.1.sanitized.fa"
2023-07-05 13:43:28.331042: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/31a5/9946/tmproomog23/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p'" in 0.8337 seconds and 51.9 Mi memory
2023-07-05 13:43:28.335722: Running the command: "cactus_analyseAssembly HG03579.2.sanitized.fa"
2023-07-05 13:43:28.343780: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9c6b/f6de/tmp0ptxo7cm/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p'" in 0.9566 seconds and 154.0 Mi memory
2023-07-05 13:43:28.348534: Running the command: "cactus_analyseAssembly HG00741.1.sanitized.fa"
2023-07-05 13:43:28.392035: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/83f0/1b16/tmpnl40c3fl/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p"
2023-07-05 13:43:28.406228: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0612/430d/tmptjxm8ymr/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p"
2023-07-05 13:43:28.413625: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b83a/ccdb/tmptil3of_z/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p"
2023-07-05 13:43:28.433406: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5d10/cec5/tmp2wp8i0nq/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p"
2023-07-05 13:43:28.503515: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/aebc/f5dd/tmp_j4sd1xz/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p'" in 0.8838 seconds and 154.0 Mi memory
2023-07-05 13:43:28.507858: Running the command: "cactus_analyseAssembly HG01952.1.sanitized.fa"
2023-07-05 13:43:28.517983: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0374/be8d/tmpk514wnof/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p"
2023-07-05 13:43:28.550011: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d1cd/aa0a/tmpmn0r458m/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 0.9809 seconds and 153.9 Mi memory
2023-07-05 13:43:28.552109: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7261/45f6/tmpyq46i431/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p'" in 0.8098 seconds and 51.9 Mi memory
2023-07-05 13:43:28.554379: Running the command: "cactus_analyseAssembly GRCh38.sanitized.fa"
2023-07-05 13:43:28.557153: Running the command: "cactus_analyseAssembly HG02080.1.sanitized.fa"
2023-07-05 13:43:28.626023: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9176/b3da/tmpco9kzzvt/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p'" in 0.8324 seconds and 67.1 Mi memory
2023-07-05 13:43:28.630626: Running the command: "cactus_analyseAssembly HG01361.1.sanitized.fa"
2023-07-05 13:43:28.637496: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7ee4/5fc4/tmpv66t9z5s/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p'" in 0.8535 seconds and 52.7 Mi memory
2023-07-05 13:43:28.642174: Running the command: "cactus_analyseAssembly NA18906.2.sanitized.fa"
2023-07-05 13:43:28.701484: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7a16/84e1/tmps9tw7jsg/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p"
2023-07-05 13:43:28.707371: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a870/b964/tmppid3tb6k/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p"
2023-07-05 13:43:28.714306: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/29f8/22e1/tmpzpag6va4/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p"
2023-07-05 13:43:28.721490: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9bb7/fb09/tmp8_1094hw/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p"
2023-07-05 13:43:28.721621: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f24e/9834/tmp74gtbxaw/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p"
2023-07-05 13:43:28.723138: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3082/13f1/tmpqm0t0c8i/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p"
2023-07-05 13:43:28.726744: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cf68/f42e/tmpgxu6ibtd/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p"
2023-07-05 13:43:28.745335: Successfully ran: "cactus_analyseAssembly HG03486.1.sanitized.fa" in 0.6193 seconds and 73.5 Mi memory
2023-07-05 13:43:28.778444: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/86f6/0d47/tmp7u4xtl4d/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p'" in 0.8294 seconds and 153.9 Mi memory
2023-07-05 13:43:28.780705: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fac/09ce/tmp2aqx9xsg/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p'" in 0.8123 seconds and 51.9 Mi memory
2023-07-05 13:43:28.782854: Running the command: "cactus_analyseAssembly HG02717.2.sanitized.fa"
2023-07-05 13:43:28.784965: Running the command: "cactus_analyseAssembly HG02109.2.sanitized.fa"
2023-07-05 13:43:28.845062: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/017a/7965/tmpv4m9v6q_/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p"
2023-07-05 13:43:28.857833: Successfully ran: "cactus_analyseAssembly HG02723.1.sanitized.fa" in 0.6069 seconds and 69.1 Mi memory
2023-07-05 13:43:28.894266: Successfully ran: "cactus_analyseAssembly HG01175.2.sanitized.fa" in 0.6632 seconds and 153.9 Mi memory
2023-07-05 13:43:28.910819: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1583/e45b/tmpdoazx2yv/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p'" in 0.8597 seconds and 154.0 Mi memory
2023-07-05 13:43:28.911203: Successfully ran: "cactus_analyseAssembly HG01952.2.sanitized.fa" in 0.694 seconds and 153.9 Mi memory
2023-07-05 13:43:28.913289: Successfully ran: "cactus_analyseAssembly HG02886.1.sanitized.fa" in 0.5964 seconds and 51.9 Mi memory
2023-07-05 13:43:28.915882: Running the command: "cactus_analyseAssembly HG01175.1.sanitized.fa"
2023-07-05 13:43:28.926140: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5d1a/c8e7/tmpo8qxpv1k/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p"
2023-07-05 13:43:28.947545: Successfully ran: "cactus_analyseAssembly HG02622.2.sanitized.fa" in 0.7098 seconds and 153.9 Mi memory
2023-07-05 13:43:28.947632: Successfully ran: "cactus_analyseAssembly HG03579.2.sanitized.fa" in 0.6112 seconds and 51.9 Mi memory
2023-07-05 13:43:29.036911: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/24ea/c554/tmp_puuz7p0/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:43:29.057849: Successfully ran: "cactus_analyseAssembly HG00741.1.sanitized.fa" in 0.7086 seconds and 153.9 Mi memory
2023-07-05 13:43:29.074851: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1828/ea84/tmpmcnmt9hq/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p"
2023-07-05 13:43:29.080286: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/30e1/463c/tmpm8jrg2ao/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p"
2023-07-05 13:43:29.091863: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5333/d9c1/tmpytqpez_2/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-05 13:43:29.097641: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b35/f461/tmpxjxg1mgv/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p"
2023-07-05 13:43:29.099761: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7c8f/c33d/tmpv40eonve/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p"
2023-07-05 13:43:29.148665: Successfully ran: "cactus_analyseAssembly HG01952.1.sanitized.fa" in 0.64 seconds and 153.9 Mi memory
2023-07-05 13:43:29.153844: Successfully ran: "cactus_analyseAssembly HG02080.1.sanitized.fa" in 0.5959 seconds and 51.9 Mi memory
2023-07-05 13:43:29.157512: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0374/be8d/tmpk514wnof/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p'" in 0.6383 seconds and 51.9 Mi memory
2023-07-05 13:43:29.160348: Running the command: "cactus_analyseAssembly NA18906.2.sanitized.fa"
2023-07-05 13:43:29.166218: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e755/703d/tmpui7k_gga/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p"
2023-07-05 13:43:29.172642: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1320/6363/tmptzel_43c/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p"
2023-07-05 13:43:29.204732: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5e86/1498/tmps15hlibt/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p"
2023-07-05 13:43:29.206012: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/83f0/1b16/tmpnl40c3fl/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p'" in 0.813 seconds and 51.9 Mi memory
2023-07-05 13:43:29.210111: Running the command: "cactus_analyseAssembly NA21309.1.sanitized.fa"
2023-07-05 13:43:29.231878: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0612/430d/tmptjxm8ymr/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p'" in 0.8249 seconds and 51.9 Mi memory
2023-07-05 13:43:29.236261: Running the command: "cactus_analyseAssembly NA21309.2.sanitized.fa"
2023-07-05 13:43:29.240790: Successfully ran: "cactus_analyseAssembly HG01361.1.sanitized.fa" in 0.6094 seconds and 67.1 Mi memory
2023-07-05 13:43:29.258184: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b83a/ccdb/tmptil3of_z/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p'" in 0.8435 seconds and 154.0 Mi memory
2023-07-05 13:43:29.262477: Running the command: "cactus_analyseAssembly HG01891.2.sanitized.fa"
2023-07-05 13:43:29.266517: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a82b/5ce3/tmpqjdcx7t9/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p"
2023-07-05 13:43:29.268755: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca35/40ae/tmph6pszu2a/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p"
2023-07-05 13:43:29.268339: Successfully ran: "cactus_analyseAssembly NA18906.2.sanitized.fa" in 0.6255 seconds and 52.6 Mi memory
2023-07-05 13:43:29.273023: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5d10/cec5/tmp2wp8i0nq/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p'" in 0.8385 seconds and 153.9 Mi memory
2023-07-05 13:43:29.275572: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/5e00/f644/tmpz8ypnxhd/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p"
2023-07-05 13:43:29.277407: Running the command: "cactus_analyseAssembly HG02486.2.sanitized.fa"
2023-07-05 13:43:29.281021: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/31c2/fd8e/tmp31odrjfe/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p"
2023-07-05 13:43:29.293469: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/4825/e376/tmp8mru57lq/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p"
2023-07-05 13:43:29.300275: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ed26/3c66/tmpnk86r1vg/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-05 13:43:29.301381: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/31ca/6add/tmpi600tlny/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p"
2023-07-05 13:43:29.311701: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/682e/6a08/tmpvn_6ngmg/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p"
2023-07-05 13:43:29.313842: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/aba6/9d6c/tmpu1np24v3/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p"
2023-07-05 13:43:29.316249: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/4241/9736/tmpwxvp3rya/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p"
2023-07-05 13:43:29.317981: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1a32/315b/tmphmgxq8xs/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p"
2023-07-05 13:43:29.322056: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/7a77/6168/tmpqcfzf2rl/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p"
2023-07-05 13:43:29.322174: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 0.7669 seconds and 153.9 Mi memory
2023-07-05 13:43:29.349099: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/d19f/c1c9/tmpn_m92yis/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p"
2023-07-05 13:43:29.354176: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/2df7/ad3c/tmpiup2aaub/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
2023-07-05 13:43:29.364607: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0c9d/2c4f/tmp5uk4x9t3/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p"
2023-07-05 13:43:29.375404: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 0.5897 seconds and 51.9 Mi memory
2023-07-05 13:43:29.386571: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/228e/750d/tmpbv4lowco/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p"
2023-07-05 13:43:29.423642: Successfully ran: "cactus_analyseAssembly HG02717.2.sanitized.fa" in 0.64 seconds and 153.9 Mi memory
2023-07-05 13:43:29.429280: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ec48/7524/tmpv81vpirj/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p"
2023-07-05 13:43:29.526632: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1c85/7faa/tmpce_stuz5/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p"
2023-07-05 13:43:29.539065: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/26e5/f3ad/tmp8q4axomh/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p"
2023-07-05 13:43:29.573637: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 0.6569 seconds and 153.9 Mi memory
2023-07-05 13:43:29.630976: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/5142/5da1/tmpc8m4x1z_/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p"
2023-07-05 13:43:29.634223: Successfully ran: "cactus_analyseAssembly NA18906.2.sanitized.fa" in 0.473 seconds and 51.9 Mi memory
2023-07-05 13:43:29.683822: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/017a/7965/tmpv4m9v6q_/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p'" in 0.8378 seconds and 154.0 Mi memory
2023-07-05 13:43:29.688384: Running the command: "cactus_analyseAssembly HG02486.1.sanitized.fa"
2023-07-05 13:43:29.693249: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6833/46be/tmpbkauq78h/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p"
2023-07-05 13:43:29.789016: Successfully ran: "cactus_analyseAssembly NA21309.1.sanitized.fa" in 0.5781 seconds and 51.9 Mi memory
2023-07-05 13:43:29.836566: Successfully ran: "cactus_analyseAssembly NA21309.2.sanitized.fa" in 0.5996 seconds and 51.9 Mi memory
2023-07-05 13:43:29.882645: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/29f8/22e1/tmpzpag6va4/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p'" in 1.1673 seconds and 56.3 Mi memory
2023-07-05 13:43:29.888831: Running the command: "cactus_analyseAssembly HG03540.1.sanitized.fa"
2023-07-05 13:43:29.906864: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/24ea/c554/tmp_puuz7p0/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p'" in 0.8687 seconds and 51.9 Mi memory
2023-07-05 13:43:29.911601: Running the command: "cactus_analyseAssembly HG01109.1.sanitized.fa"
2023-07-05 13:43:29.916664: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7c8f/c33d/tmpv40eonve/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p'" in 0.8156 seconds and 66.3 Mi memory
2023-07-05 13:43:29.917992: Successfully ran: "cactus_analyseAssembly HG01891.2.sanitized.fa" in 0.6547 seconds and 153.9 Mi memory
2023-07-05 13:43:29.921358: Running the command: "cactus_analyseAssembly HG02055.1.sanitized.fa"
2023-07-05 13:43:29.926278: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a870/b964/tmppid3tb6k/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p'" in 1.2176 seconds and 154.0 Mi memory
Got message from job at time 07-05-2023 13:43:29: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 5 Total-length: 90258868 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 76194477 Median-sequence-length: 179093 Max-sequence-length: 76194477 Min-sequence-length: 42320

2023-07-05 13:43:29.931441: Successfully ran: "cactus_analyseAssembly HG02486.2.sanitized.fa" in 0.6532 seconds and 153.9 Mi memory
2023-07-05 13:43:29.933708: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f24e/9834/tmp74gtbxaw/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p'" in 1.211 seconds and 154.0 Mi memory
2023-07-05 13:43:29.937216: Running the command: "cactus_analyseAssembly HG01361.2.sanitized.fa"
2023-07-05 13:43:29.939906: Running the command: "cactus_analyseAssembly HG00735.1.sanitized.fa"
2023-07-05 13:43:29.951272: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cf68/f42e/tmpgxu6ibtd/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p'" in 1.2234 seconds and 154.0 Mi memory
2023-07-05 13:43:29.957054: Running the command: "cactus_analyseAssembly HG03579.2.sanitized.fa"
2023-07-05 13:43:29.963182: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1828/ea84/tmpmcnmt9hq/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p'" in 0.887 seconds and 51.9 Mi memory
2023-07-05 13:43:29.967323: Running the command: "cactus_analyseAssembly HG02630.2.sanitized.fa"
2023-07-05 13:43:29.966827: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3082/13f1/tmpqm0t0c8i/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p'" in 1.2426 seconds and 154.0 Mi memory
2023-07-05 13:43:29.969211: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7a16/84e1/tmps9tw7jsg/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p'" in 1.2666 seconds and 153.9 Mi memory
2023-07-05 13:43:29.972841: Running the command: "cactus_analyseAssembly HG02148.1.sanitized.fa"
2023-07-05 13:43:29.975645: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/30e1/463c/tmpm8jrg2ao/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p'" in 0.8943 seconds and 154.0 Mi memory
2023-07-05 13:43:29.975369: Running the command: "cactus_analyseAssembly HG01891.2.sanitized.fa"
2023-07-05 13:43:29.979777: Running the command: "cactus_analyseAssembly HG02148.1.sanitized.fa"
2023-07-05 13:43:29.987065: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9bb7/fb09/tmp8_1094hw/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p'" in 1.2645 seconds and 153.9 Mi memory
2023-07-05 13:43:29.992389: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b35/f461/tmpxjxg1mgv/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p'" in 0.8936 seconds and 154.0 Mi memory
2023-07-05 13:43:29.992951: Running the command: "cactus_analyseAssembly HG02717.2.sanitized.fa"
2023-07-05 13:43:29.994617: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1320/6363/tmptzel_43c/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p'" in 0.8208 seconds and 154.0 Mi memory
2023-07-05 13:43:29.997000: Running the command: "cactus_analyseAssembly HG01891.1.sanitized.fa"
2023-07-05 13:43:29.998795: Running the command: "cactus_analyseAssembly HG01071.2.sanitized.fa"
2023-07-05 13:43:30.006597: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5333/d9c1/tmpytqpez_2/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p'" in 0.9136 seconds and 153.9 Mi memory
2023-07-05 13:43:30.010880: Running the command: "cactus_analyseAssembly HG00621.1.sanitized.fa"
2023-07-05 13:43:30.117137: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e755/703d/tmpui7k_gga/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 0.9494 seconds and 51.9 Mi memory
2023-07-05 13:43:30.121670: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
2023-07-05 13:43:30.126597: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5e86/1498/tmps15hlibt/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p'" in 0.9206 seconds and 51.9 Mi memory
2023-07-05 13:43:30.131321: Running the command: "cactus_analyseAssembly HG01978.1.sanitized.fa"
2023-07-05 13:43:30.134307: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/d19f/c1c9/tmpn_m92yis/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p'" in 0.7842 seconds and 51.9 Mi memory
2023-07-05 13:43:30.138701: Running the command: "cactus_analyseAssembly NA20129.2.sanitized.fa"
2023-07-05 13:43:30.161950: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5d1a/c8e7/tmpo8qxpv1k/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p'" in 1.2347 seconds and 154.0 Mi memory
2023-07-05 13:43:30.167711: Running the command: "cactus_analyseAssembly HG01358.2.sanitized.fa"
2023-07-05 13:43:30.259276: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ca35/40ae/tmph6pszu2a/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p'" in 0.9891 seconds and 153.9 Mi memory
2023-07-05 13:43:30.263815: Running the command: "cactus_analyseAssembly HG03540.2.sanitized.fa"
2023-07-05 13:43:30.305739: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/02db/0582/tmph5m_ug3f/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-05 13:43:30.322540: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/ec3e/07ae/tmprfysl6zz/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p"
2023-07-05 13:43:30.339339: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/b24c/4548/tmpjxzc8o68/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p"
2023-07-05 13:43:30.342631: Successfully ran: "cactus_analyseAssembly HG02486.1.sanitized.fa" in 0.6534 seconds and 153.9 Mi memory
2023-07-05 13:43:30.355328: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/9051/4141/tmpy08y376h/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p"
2023-07-05 13:43:30.371302: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/e1f6/336b/tmpfdh7i3t9/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p"
2023-07-05 13:43:30.493291: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
2023-07-05 13:43:30.494895: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/4241/9736/tmpwxvp3rya/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p'" in 1.1774 seconds and 51.9 Mi memory
2023-07-05 13:43:30.499572: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1a32/315b/tmphmgxq8xs/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p'" in 1.1804 seconds and 51.9 Mi memory
2023-07-05 13:43:30.501667: Running the command: "cactus_analyseAssembly HG02630.2.sanitized.fa"
2023-07-05 13:43:30.506067: Running the command: "cactus_analyseAssembly HG01175.1.sanitized.fa"
2023-07-05 13:43:30.507838: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/31c2/fd8e/tmp31odrjfe/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p'" in 1.2255 seconds and 51.9 Mi memory
2023-07-05 13:43:30.514907: Running the command: "cactus_analyseAssembly HG03453.2.sanitized.fa"
2023-07-05 13:43:30.516678: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/5e00/f644/tmpz8ypnxhd/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p'" in 1.24 seconds and 154.0 Mi memory
2023-07-05 13:43:30.522988: Running the command: "cactus_analyseAssembly HG02559.1.sanitized.fa"
2023-07-05 13:43:30.524265: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ed26/3c66/tmpnk86r1vg/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p'" in 1.2228 seconds and 71.2 Mi memory
2023-07-05 13:43:30.528764: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0c9d/2c4f/tmp5uk4x9t3/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p'" in 1.163 seconds and 51.9 Mi memory
2023-07-05 13:43:30.530513: Running the command: "cactus_analyseAssembly HG03516.2.sanitized.fa"
2023-07-05 13:43:30.534497: Running the command: "cactus_analyseAssembly HG02886.2.sanitized.fa"
2023-07-05 13:43:30.538856: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/31ca/6add/tmpi600tlny/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p'" in 1.2364 seconds and 154.0 Mi memory
2023-07-05 13:43:30.545902: Running the command: "cactus_analyseAssembly HG01928.1.sanitized.fa"
2023-07-05 13:43:30.569164: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 0.6567 seconds and 51.9 Mi memory
2023-07-05 13:43:30.572156: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/7a77/6168/tmpqcfzf2rl/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p'" in 1.2488 seconds and 154.0 Mi memory
2023-07-05 13:43:30.578760: Running the command: "cactus_analyseAssembly HG02257.1.sanitized.fa"
2023-07-05 13:43:30.584809: Successfully ran: "cactus_analyseAssembly HG02055.1.sanitized.fa" in 0.6626 seconds and 66.3 Mi memory
2023-07-05 13:43:30.599933: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/7805/fcef/tmpx6l7ki6y/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p"
2023-07-05 13:43:30.601003: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 0.6328 seconds and 51.9 Mi memory
2023-07-05 13:43:30.611338: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/228e/750d/tmpbv4lowco/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p'" in 1.2237 seconds and 154.0 Mi memory
2023-07-05 13:43:30.617537: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/aba6/9d6c/tmpu1np24v3/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p'" in 1.3026 seconds and 154.0 Mi memory
2023-07-05 13:43:30.616731: Running the command: "cactus_analyseAssembly HG01891.1.sanitized.fa"
2023-07-05 13:43:30.624015: Running the command: "cactus_analyseAssembly NA18906.2.sanitized.fa"
2023-07-05 13:43:30.636645: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6833/46be/tmpbkauq78h/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p'" in 0.9419 seconds and 154.0 Mi memory
2023-07-05 13:43:30.638972: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/1eb2/669f/tmp998re_3g/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:43:30.641473: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/257a/c554/tmpxq28k84o/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p"
2023-07-05 13:43:30.640954: Running the command: "cactus_analyseAssembly HG01361.2.sanitized.fa"
2023-07-05 13:43:30.652223: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ec48/7524/tmpv81vpirj/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p'" in 1.2217 seconds and 63.5 Mi memory
2023-07-05 13:43:30.658957: Running the command: "cactus_analyseAssembly HG02148.2.sanitized.fa"
2023-07-05 13:43:30.664573: Successfully ran: "cactus_analyseAssembly HG02148.1.sanitized.fa" in 0.684 seconds and 153.9 Mi memory
2023-07-05 13:43:30.680675: Successfully ran: "cactus_analyseAssembly HG01071.2.sanitized.fa" in 0.6812 seconds and 153.9 Mi memory
2023-07-05 13:43:30.684302: Successfully ran: "cactus_analyseAssembly HG01891.1.sanitized.fa" in 0.6865 seconds and 153.9 Mi memory
2023-07-05 13:43:30.690611: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1c85/7faa/tmpce_stuz5/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p'" in 1.1627 seconds and 51.9 Mi memory
2023-07-05 13:43:30.697030: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/8530/c2c1/tmp5_c52j4h/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
2023-07-05 13:43:30.696442: Running the command: "cactus_analyseAssembly HG02818.2.sanitized.fa"
2023-07-05 13:43:30.701827: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 0.6902 seconds and 153.9 Mi memory
2023-07-05 13:43:30.706759: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/41a4/cf3c/tmpnti98c14/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p"
2023-07-05 13:43:30.721239: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/5f93/7313/tmp9u14ed1k/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p"
2023-07-05 13:43:30.722658: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/f3bf/f83e/tmp36196v72/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:43:30.728404: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/16ff/c8bb/tmptl2eqgat/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p"
2023-07-05 13:43:30.748398: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 0.6089 seconds and 51.9 Mi memory
2023-07-05 13:43:30.757519: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/26e5/f3ad/tmp8q4axomh/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p'" in 1.2172 seconds and 51.9 Mi memory
2023-07-05 13:43:30.764204: Running the command: "cactus_analyseAssembly NA20129.1.sanitized.fa"
2023-07-05 13:43:30.767963: Successfully ran: "cactus_analyseAssembly HG03540.1.sanitized.fa" in 0.8783 seconds and 56.2 Mi memory
2023-07-05 13:43:30.791609: Successfully ran: "cactus_analyseAssembly HG02080.2.sanitized.fa" in 0.6691 seconds and 51.9 Mi memory
2023-07-05 13:43:30.829684: Successfully ran: "cactus_analyseAssembly HG01978.1.sanitized.fa" in 0.6976 seconds and 51.9 Mi memory
2023-07-05 13:43:30.854750: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/c038/4eef/tmpe9q62md9/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-05 13:43:30.864017: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 0.9259 seconds and 153.9 Mi memory
2023-07-05 13:43:30.864101: Successfully ran: "cactus_analyseAssembly HG00735.1.sanitized.fa" in 0.9235 seconds and 153.9 Mi memory
2023-07-05 13:43:30.877780: Successfully ran: "cactus_analyseAssembly HG03579.2.sanitized.fa" in 0.92 seconds and 153.9 Mi memory
2023-07-05 13:43:30.888766: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/682e/6a08/tmpvn_6ngmg/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p'" in 1.5758 seconds and 154.0 Mi memory
2023-07-05 13:43:30.889986: Successfully ran: "cactus_analyseAssembly HG02148.1.sanitized.fa" in 0.9163 seconds and 153.9 Mi memory
2023-07-05 13:43:30.895072: Running the command: "cactus_analyseAssembly HG02486.1.sanitized.fa"
2023-07-05 13:43:30.908306: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/5142/5da1/tmpc8m4x1z_/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p'" in 1.2765 seconds and 154.0 Mi memory
2023-07-05 13:43:30.909955: Successfully ran: "cactus_analyseAssembly HG01891.2.sanitized.fa" in 0.9338 seconds and 153.9 Mi memory
2023-07-05 13:43:30.910601: Successfully ran: "cactus_analyseAssembly HG02717.2.sanitized.fa" in 0.9169 seconds and 153.9 Mi memory
2023-07-05 13:43:30.913022: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/4cbb/9391/tmp8a55mfv8/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
2023-07-05 13:43:30.914984: Running the command: "cactus_analyseAssembly HG02622.2.sanitized.fa"
2023-07-05 13:43:30.998248: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/6351/6ef2/tmpbhjh490t/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p"
2023-07-05 13:43:31.013627: Successfully ran: "cactus_analyseAssembly HG03540.2.sanitized.fa" in 0.7489 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:43:31: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 3 Total-length: 66540787 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33370103 Median-sequence-length: 31862112 Max-sequence-length: 33370103 Min-sequence-length: 1308572

2023-07-05 13:43:31.127715: Successfully ran: "cactus_analyseAssembly HG01358.2.sanitized.fa" in 0.9591 seconds and 153.9 Mi memory
2023-07-05 13:43:31.150728: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/c0ef/c8f5/tmpdjq61wmz/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p'" in 0.6764 seconds and 51.9 Mi memory
2023-07-05 13:43:31.155726: Running the command: "cactus_analyseAssembly HG02148.1.sanitized.fa"
2023-07-05 13:43:31.158185: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/75a1/9229/tmp2fw6x07f/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p'" in 0.6863 seconds and 24.6 Mi memory
2023-07-05 13:43:31.159306: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/5b82/3715/tmpix9flpze/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p'" in 0.6739 seconds and 51.9 Mi memory
2023-07-05 13:43:31.161579: Running the command: "cactus_analyseAssembly NA21309.2.sanitized.fa"
2023-07-05 13:43:31.162531: Running the command: "cactus_analyseAssembly HG01928.1.sanitized.fa"
2023-07-05 13:43:31.161800: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/8522/11ec/tmp7p9brtk7/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
2023-07-05 13:43:31.173902: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/df34/d67c/tmpm1vu0koa/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p'" in 0.7064 seconds and 51.9 Mi memory
2023-07-05 13:43:31.175482: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/ef80/08e1/tmpxvahetfc/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p'" in 0.7043 seconds and 51.9 Mi memory
2023-07-05 13:43:31.176826: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/0b74/0f78/tmp03i78rcb/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
2023-07-05 13:43:31.178835: Running the command: "cactus_analyseAssembly HG02055.1.sanitized.fa"
2023-07-05 13:43:31.178859: Running the command: "cactus_analyseAssembly HG01358.1.sanitized.fa"
2023-07-05 13:43:31.179861: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/7de3/12fb/tmp8t39nimq/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-05 13:43:31.183386: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/7d85/580d/tmpr7l3d9ao/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p'" in 0.6968 seconds and 51.9 Mi memory
2023-07-05 13:43:31.187036: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/f701/a554/tmp7hhwsd7p/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p"
2023-07-05 13:43:31.188229: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/e1f6/336b/tmpfdh7i3t9/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p'" in 0.8157 seconds and 51.9 Mi memory
2023-07-05 13:43:31.188437: Running the command: "cactus_analyseAssembly HG02145.1.sanitized.fa"
2023-07-05 13:43:31.191517: Running the command: "cactus_analyseAssembly HG03492.2.sanitized.fa"
2023-07-05 13:43:31.196862: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/6af1/d17a/tmp71kek2le/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p'" in 0.7874 seconds and 20.2 Mi memory
2023-07-05 13:43:31.200099: Running the command: "cactus_analyseAssembly HG02572.1.sanitized.fa"
2023-07-05 13:43:31.201325: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/2018/afe8/tmpcss40dmq/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p"
2023-07-05 13:43:31.202229: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/d39f/a7db/tmpfxcdhiww/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-05 13:43:31.204801: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/0e20/d634/tmpbxponkob/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p'" in 0.7406 seconds and 51.9 Mi memory
2023-07-05 13:43:31.205491: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/1e3f/d39d/tmpl4lpas9f/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p'" in 0.7579 seconds and 51.9 Mi memory
2023-07-05 13:43:31.206107: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/5388/be7d/tmpaxrdgpsr/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p'" in 0.806 seconds and 51.9 Mi memory
2023-07-05 13:43:31.207925: Running the command: "cactus_analyseAssembly HG01258.2.sanitized.fa"
2023-07-05 13:43:31.207231: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/a288/7f0e/tmppy0qdqnp/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p"
2023-07-05 13:43:31.208076: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/56fa/5870/tmpvlivcs92/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p"
2023-07-05 13:43:31.209045: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/d90e/dc7b/tmpoalwe8c7/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p'" in 0.8004 seconds and 51.9 Mi memory
2023-07-05 13:43:31.209760: Running the command: "cactus_analyseAssembly HG00673.1.sanitized.fa"
2023-07-05 13:43:31.210597: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
2023-07-05 13:43:31.211942: Running the command: "cactus_analyseAssembly HG02486.1.sanitized.fa"
2023-07-05 13:43:31.215869: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/7695/7753/tmp6bojd20d/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 0.808 seconds and 18.9 Mi memory
2023-07-05 13:43:31.216737: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/e8a1/7f36/tmpj5bs97l8/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p'" in 0.8217 seconds and 51.9 Mi memory
2023-07-05 13:43:31.215992: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/368c/607e/tmp93f0112s/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p"
2023-07-05 13:43:31.218734: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/2f67/897d/tmptmr_eu1x/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p'" in 0.8175 seconds and 51.9 Mi memory
2023-07-05 13:43:31.219352: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
2023-07-05 13:43:31.222147: Running the command: "cactus_analyseAssembly HG03540.1.sanitized.fa"
2023-07-05 13:43:31.222199: Running the command: "cactus_analyseAssembly HG02630.2.sanitized.fa"
2023-07-05 13:43:31.222280: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/6dcf/cb0c/tmpq4dd38pp/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p'" in 0.7726 seconds and 63.5 Mi memory
2023-07-05 13:43:31.221788: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/b865/f70e/tmp_cy6on4v/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p"
2023-07-05 13:43:31.221894: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/41d2/83f6/tmp4tpv61f7/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p"
2023-07-05 13:43:31.223303: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/9051/4141/tmpy08y376h/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p'" in 0.8667 seconds and 61.9 Mi memory
2023-07-05 13:43:31.225561: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/ec3e/07ae/tmprfysl6zz/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p'" in 0.9016 seconds and 51.8 Mi memory
2023-07-05 13:43:31.226018: Running the command: "cactus_analyseAssembly HG02622.1.sanitized.fa"
2023-07-05 13:43:31.225985: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/fd1c/f037/tmppzxu32na/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p'" in 0.775 seconds and 51.9 Mi memory
2023-07-05 13:43:31.226881: Running the command: "cactus_analyseAssembly HG01243.1.sanitized.fa"
2023-07-05 13:43:31.229267: Running the command: "cactus_analyseAssembly HG00741.2.sanitized.fa"
2023-07-05 13:43:31.230466: Running the command: "cactus_analyseAssembly NA20129.1.sanitized.fa"
2023-07-05 13:43:31.232112: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/6464/88b4/tmpabzyjfwj/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p'" in 0.8464 seconds and 51.9 Mi memory
2023-07-05 13:43:31.235113: Running the command: "cactus_analyseAssembly HG02572.2.sanitized.fa"
2023-07-05 13:43:31.239483: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/7b33/1995/tmp73cgo316/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p'" in 0.8517 seconds and 25.1 Mi memory
2023-07-05 13:43:31.241010: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/6a54/fd7f/tmpa04t_1cq/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p'" in 0.7496 seconds and 51.8 Mi memory
2023-07-05 13:43:31.242930: Running the command: "cactus_analyseAssembly HG01071.1.sanitized.fa"
2023-07-05 13:43:31.244456: Running the command: "cactus_analyseAssembly HG02559.2.sanitized.fa"
2023-07-05 13:43:31.249548: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/cd81/d086/tmp_ngt75ia/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p'" in 0.8098 seconds and 51.9 Mi memory
2023-07-05 13:43:31.252978: Running the command: "cactus_analyseAssembly HG01106.1.sanitized.fa"
2023-07-05 13:43:31.253659: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/9eb9/bc81/tmp1c16072g/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p'" in 0.766 seconds and 51.9 Mi memory
2023-07-05 13:43:31.253734: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/7805/fcef/tmpx6l7ki6y/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p'" in 0.6526 seconds and 51.9 Mi memory
2023-07-05 13:43:31.253703: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/02db/0582/tmph5m_ug3f/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p'" in 0.9466 seconds and 51.9 Mi memory
2023-07-05 13:43:31.255743: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/2539/d8e5/tmp73l4wj8l/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p'" in 0.8456 seconds and 51.9 Mi memory
2023-07-05 13:43:31.256835: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/b24c/4548/tmpjxzc8o68/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p'" in 0.9162 seconds and 51.9 Mi memory
2023-07-05 13:43:31.257115: Running the command: "cactus_analyseAssembly HG00733.1.sanitized.fa"
2023-07-05 13:43:31.257182: Running the command: "cactus_analyseAssembly HG03579.2.sanitized.fa"
2023-07-05 13:43:31.257321: Running the command: "cactus_analyseAssembly HG01891.2.sanitized.fa"
2023-07-05 13:43:31.258584: Running the command: "cactus_analyseAssembly NA18906.1.sanitized.fa"
2023-07-05 13:43:31.260073: Running the command: "cactus_analyseAssembly HG03492.1.sanitized.fa"
2023-07-05 13:43:31.261785: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/84db/9857/tmp28inis3w/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p"
2023-07-05 13:43:31.266560: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/b277/ebb3/tmpihgic7mc/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p"
2023-07-05 13:43:31.267932: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/3c70/c037/tmpswjj4szt/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p"
2023-07-05 13:43:31.272413: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/1eb2/669f/tmp998re_3g/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p'" in 0.6324 seconds and 51.9 Mi memory
2023-07-05 13:43:31.274621: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2e4f/77aa/tmp36sykpa_/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
2023-07-05 13:43:31.275641: Running the command: "cactus_analyseAssembly HG01109.1.sanitized.fa"
2023-07-05 13:43:31.280194: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/257a/c554/tmpxq28k84o/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p'" in 0.6373 seconds and 51.9 Mi memory
2023-07-05 13:43:31.283267: Running the command: "cactus_analyseAssembly HG02630.1.sanitized.fa"
2023-07-05 13:43:31.284823: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/25e2/1d6d/tmpvihxijom/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p"
2023-07-05 13:43:31.286086: Successfully ran: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa" in 0.8428 seconds and 4.5 Mi memory
2023-07-05 13:43:31.289066: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/11d2/d796/tmphwpikbl6/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p"
2023-07-05 13:43:31.310511: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4fbb/da01/tmpsqpg91y0/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p"
2023-07-05 13:43:31.311159: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/99a0/2618/tmpv9euzfjz/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p'" in 0.8412 seconds and 51.9 Mi memory
2023-07-05 13:43:31.316318: Running the command: "cactus_analyseAssembly HG02723.2.sanitized.fa"
2023-07-05 13:43:31.321445: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/8530/c2c1/tmp5_c52j4h/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p'" in 0.6234 seconds and 51.9 Mi memory
2023-07-05 13:43:31.324401: Running the command: "cactus_analyseAssembly HG02717.1.sanitized.fa"
2023-07-05 13:43:31.348537: Successfully ran: "cactus_analyseAssembly HG02886.1.sanitized.fa" in 0.866 seconds and 63.2 Mi memory
2023-07-05 13:43:31.363385: Successfully ran: "cactus_analyseAssembly HG03098.2.sanitized.fa" in 0.8692 seconds and 61.4 Mi memory
2023-07-05 13:43:31.363933: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 0.8615 seconds and 51.9 Mi memory
2023-07-05 13:43:31.370393: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/50ea/1afa/tmp263ygq2l/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
2023-07-05 13:43:31.370528: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 0.855 seconds and 51.9 Mi memory
2023-07-05 13:43:31.370529: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 0.8636 seconds and 51.9 Mi memory
2023-07-05 13:43:31.374189: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1911/14f4/tmp_qr_nly5/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p"
2023-07-05 13:43:31.375484: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/9c6d/e03b/tmpruchst4b/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-05 13:43:31.381466: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1757/e1c9/tmp86y7u554/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:43:31.383988: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 0.7421 seconds and 153.9 Mi memory
2023-07-05 13:43:31.387027: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/cedf/e64c/tmpc14k0hox/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
2023-07-05 13:43:31.390917: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/129b/3c8e/tmptwcodskp/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p"
2023-07-05 13:43:31.406526: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/6669/8c14/tmp5nz0yauq/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p"
2023-07-05 13:43:31.408325: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 0.877 seconds and 71.2 Mi memory
2023-07-05 13:43:31.410756: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/16ff/c8bb/tmptl2eqgat/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p'" in 0.6807 seconds and 51.9 Mi memory
2023-07-05 13:43:31.414165: Running the command: "cactus_analyseAssembly HG01891.1.sanitized.fa"
2023-07-05 13:43:31.421931: Successfully ran: "cactus_analyseAssembly HG02886.2.sanitized.fa" in 0.8867 seconds and 51.9 Mi memory
2023-07-05 13:43:31.430550: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/8de7/1757/tmp0usj0uyk/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p"
2023-07-05 13:43:31.436879: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/95d8/9029/tmpca13u2zw/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p"
2023-07-05 13:43:31.439219: Successfully ran: "cactus_analyseAssembly HG02559.1.sanitized.fa" in 0.9153 seconds and 153.9 Mi memory
2023-07-05 13:43:31.439900: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f4bb/707f/tmpimx979xk/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p"
2023-07-05 13:43:31.450232: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ebb5/14b0/tmpni5sve0o/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p"
2023-07-05 13:43:31.455781: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/c038/4eef/tmpe9q62md9/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p'" in 0.6 seconds and 51.9 Mi memory
2023-07-05 13:43:31.458876: Running the command: "cactus_analyseAssembly HG00733.2.sanitized.fa"
2023-07-05 13:43:31.472092: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/6785/9a0f/tmp317lsebd/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p"
2023-07-05 13:43:31.480837: Successfully ran: "cactus_analyseAssembly HG01928.1.sanitized.fa" in 0.9338 seconds and 153.9 Mi memory
2023-07-05 13:43:31.490372: Successfully ran: "cactus_analyseAssembly HG02257.1.sanitized.fa" in 0.9108 seconds and 153.9 Mi memory
2023-07-05 13:43:31.493962: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/4cbb/9391/tmp8a55mfv8/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p'" in 0.58 seconds and 51.9 Mi memory
2023-07-05 13:43:31.496927: Running the command: "cactus_analyseAssembly HG00621.2.sanitized.fa"
2023-07-05 13:43:31.499701: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/d45b/8b46/tmpp3i0xlqh/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p"
2023-07-05 13:43:31.506871: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/3bd3/8e12/tmpc5ozopjn/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p"
2023-07-05 13:43:31.511068: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/23c5/5ac2/tmp5z3qyec7/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p"
2023-07-05 13:43:31.534414: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 0.8746 seconds and 63.5 Mi memory
2023-07-05 13:43:31.543327: Successfully ran: "cactus_analyseAssembly NA18906.2.sanitized.fa" in 0.9185 seconds and 153.9 Mi memory
2023-07-05 13:43:31.557127: Successfully ran: "cactus_analyseAssembly HG01891.1.sanitized.fa" in 0.9396 seconds and 153.9 Mi memory
2023-07-05 13:43:31.564809: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 0.8676 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:43:31: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 6 Total-length: 89486739 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 71546602 Median-sequence-length: 772444 Max-sequence-length: 71546602 Min-sequence-length: 19104

2023-07-05 13:43:31.587700: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/6351/6ef2/tmpbhjh490t/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p'" in 0.5882 seconds and 25.9 Mi memory
2023-07-05 13:43:31.590966: Running the command: "cactus_analyseAssembly HG01358.2.sanitized.fa"
2023-07-05 13:43:31.591850: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/98a8/bac9/tmpzgsigf9c/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p"
2023-07-05 13:43:31.623000: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/4722/3158/tmpef6ko4ha/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p'" in 1.2021 seconds and 75.1 Mi memory
2023-07-05 13:43:31.627866: Successfully ran: "cactus_analyseAssembly NA20129.1.sanitized.fa" in 0.8628 seconds and 51.9 Mi memory
2023-07-05 13:43:31.628659: Running the command: "cactus_analyseAssembly HG01123.1.sanitized.fa"
2023-07-05 13:43:31.636870: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 0.4359 seconds and 20.2 Mi memory
2023-07-05 13:43:31.638132: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/b890/6c8a/tmpz7sbus5p/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p'" in 1.2034 seconds and 154.0 Mi memory
2023-07-05 13:43:31.640594: Successfully ran: "cactus_analyseAssembly NA21309.2.sanitized.fa" in 0.4782 seconds and 24.5 Mi memory
2023-07-05 13:43:31.640876: Successfully ran: "cactus_analyseAssembly HG03492.2.sanitized.fa" in 0.4486 seconds and 51.9 Mi memory
2023-07-05 13:43:31.642347: Successfully ran: "cactus_analyseAssembly HG02080.2.sanitized.fa" in 0.4222 seconds and 18.9 Mi memory
2023-07-05 13:43:31.643937: Running the command: "cactus_analyseAssembly HG01071.2.sanitized.fa"
2023-07-05 13:43:31.649562: Successfully ran: "cactus_analyseAssembly HG01928.1.sanitized.fa" in 0.4861 seconds and 51.9 Mi memory
2023-07-05 13:43:31.649707: Successfully ran: "cactus_analyseAssembly HG02148.1.sanitized.fa" in 0.493 seconds and 51.9 Mi memory
2023-07-05 13:43:31.653330: Successfully ran: "cactus_analyseAssembly HG03540.1.sanitized.fa" in 0.4301 seconds and 51.9 Mi memory
2023-07-05 13:43:31.656131: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 0.4455 seconds and 51.9 Mi memory
2023-07-05 13:43:31.656277: Successfully ran: "cactus_analyseAssembly HG01358.1.sanitized.fa" in 0.4765 seconds and 51.9 Mi memory
2023-07-05 13:43:31.658751: Successfully ran: "cactus_analyseAssembly HG02055.1.sanitized.fa" in 0.4791 seconds and 51.9 Mi memory
2023-07-05 13:43:31.659224: Successfully ran: "cactus_analyseAssembly HG02486.1.sanitized.fa" in 0.4465 seconds and 51.9 Mi memory
2023-07-05 13:43:31.660726: Successfully ran: "cactus_analyseAssembly HG03098.2.sanitized.fa" in 0.4489 seconds and 51.9 Mi memory
2023-07-05 13:43:31.660883: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/02a7/33b8/tmpa2f38xsh/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p'" in 1.1794 seconds and 67.9 Mi memory
2023-07-05 13:43:31.663414: Successfully ran: "cactus_analyseAssembly HG02145.1.sanitized.fa" in 0.474 seconds and 51.9 Mi memory
2023-07-05 13:43:31.665000: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 0.4561 seconds and 51.9 Mi memory
2023-07-05 13:43:31.666458: Running the command: "cactus_analyseAssembly HG00741.1.sanitized.fa"
2023-07-05 13:43:31.672065: Successfully ran: "cactus_analyseAssembly NA20129.1.sanitized.fa" in 0.4404 seconds and 51.9 Mi memory
2023-07-05 13:43:31.675345: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 0.4523 seconds and 51.9 Mi memory
2023-07-05 13:43:31.679017: Successfully ran: "cactus_analyseAssembly HG00741.2.sanitized.fa" in 0.4489 seconds and 51.9 Mi memory
2023-07-05 13:43:31.682739: Successfully ran: "cactus_analyseAssembly HG01071.1.sanitized.fa" in 0.439 seconds and 25.1 Mi memory
2023-07-05 13:43:31.689882: Successfully ran: "cactus_analyseAssembly HG02572.2.sanitized.fa" in 0.454 seconds and 51.9 Mi memory
2023-07-05 13:43:31.692159: Successfully ran: "cactus_analyseAssembly HG01243.1.sanitized.fa" in 0.4644 seconds and 61.9 Mi memory
2023-07-05 13:43:31.701690: Successfully ran: "cactus_analyseAssembly HG02622.1.sanitized.fa" in 0.4748 seconds and 63.5 Mi memory
2023-07-05 13:43:31.703154: Successfully ran: "cactus_analyseAssembly HG03579.2.sanitized.fa" in 0.4452 seconds and 51.9 Mi memory
2023-07-05 13:43:31.704929: Successfully ran: "cactus_analyseAssembly HG01106.1.sanitized.fa" in 0.4511 seconds and 51.9 Mi memory
2023-07-05 13:43:31.706688: Successfully ran: "cactus_analyseAssembly HG00733.1.sanitized.fa" in 0.4487 seconds and 51.9 Mi memory
2023-07-05 13:43:31.712136: Successfully ran: "cactus_analyseAssembly NA18906.1.sanitized.fa" in 0.4528 seconds and 51.9 Mi memory
2023-07-05 13:43:31.715179: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 0.4543 seconds and 51.9 Mi memory
2023-07-05 13:43:31.721949: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 0.4455 seconds and 51.9 Mi memory
2023-07-05 13:43:31.725726: Successfully ran: "cactus_analyseAssembly HG02630.1.sanitized.fa" in 0.4416 seconds and 51.9 Mi memory
2023-07-05 13:43:31.732218: Successfully ran: "cactus_analyseAssembly HG02559.2.sanitized.fa" in 0.487 seconds and 51.9 Mi memory
2023-07-05 13:43:31.756942: Successfully ran: "cactus_analyseAssembly HG02717.1.sanitized.fa" in 0.4317 seconds and 51.9 Mi memory
2023-07-05 13:43:31.768308: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 0.4509 seconds and 51.9 Mi memory
2023-07-05 13:43:31.810015: Successfully ran: "cactus_analyseAssembly HG02486.1.sanitized.fa" in 0.914 seconds and 153.9 Mi memory
2023-07-05 13:43:31.827797: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/3c70/c037/tmpswjj4szt/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p'" in 0.5586 seconds and 22.5 Mi memory
2023-07-05 13:43:31.830710: Running the command: "cactus_analyseAssembly HG02055.2.sanitized.fa"
2023-07-05 13:43:31.832847: Successfully ran: "cactus_analyseAssembly HG02622.2.sanitized.fa" in 0.917 seconds and 153.9 Mi memory
Issued job 'cactus_cons' kind-cactus_cons/instance-wmvful0m v1 with job batch system ID: 2649 and disk: 35.6 Mi, memory: 11.1 Gi, cores: 64, accelerators: [], preemptible: False
2023-07-05 13:43:31.861009: Successfully ran: "cactus_analyseAssembly HG01891.1.sanitized.fa" in 0.446 seconds and 51.9 Mi memory
2023-07-05 13:43:31.871833: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/41a4/cf3c/tmpnti98c14/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p'" in 1.164 seconds and 76.9 Mi memory
2023-07-05 13:43:31.875069: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 0.4154 seconds and 51.9 Mi memory
2023-07-05 13:43:31.877596: Running the command: "cactus_analyseAssembly HG01361.1.sanitized.fa"
Issued job 'cactus_cons' kind-cactus_cons/instance-xahu76z0 v1 with job batch system ID: 2650 and disk: 3.6 Mi, memory: 3.7 Gi, cores: 64, accelerators: [], preemptible: False
2023-07-05 13:43:31.891292: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/5f93/7313/tmp9u14ed1k/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p'" in 1.169 seconds and 51.9 Mi memory
2023-07-05 13:43:31.897245: Running the command: "cactus_analyseAssembly HG02572.1.sanitized.fa"
2023-07-05 13:43:31.909123: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/50ea/1afa/tmp263ygq2l/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p'" in 0.5376 seconds and 4.1 Mi memory
2023-07-05 13:43:31.912013: Running the command: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa"
2023-07-05 13:43:31.920245: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 0.4226 seconds and 51.9 Mi memory
2023-07-05 13:43:31.921579: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/f3bf/f83e/tmp36196v72/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 1.1979 seconds and 153.9 Mi memory
2023-07-05 13:43:31.927485: Running the command: "cactus_analyseAssembly GRCh38.sanitized.fa"
Issued job 'cactus_cons' kind-cactus_cons/instance-hdstzmym v1 with job batch system ID: 2651 and disk: 2.8 Gi, memory: 94.7 Gi, cores: 64, accelerators: [], preemptible: False
2023-07-05 13:43:31.979299: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/6669/8c14/tmp5nz0yauq/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p'" in 0.5717 seconds and 22.8 Mi memory
2023-07-05 13:43:31.982128: Running the command: "cactus_analyseAssembly HG02818.2.sanitized.fa"
2023-07-05 13:43:32.000290: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/cedf/e64c/tmpc14k0hox/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p'" in 0.6122 seconds and 51.9 Mi memory
2023-07-05 13:43:32.003003: Running the command: "cactus_analyseAssembly HG03486.1.sanitized.fa"
2023-07-05 13:43:32.006356: Successfully ran: "cactus_analyseAssembly HG01358.2.sanitized.fa" in 0.4145 seconds and 25.8 Mi memory
2023-07-05 13:43:32.028606: Successfully ran: "cactus_analyseAssembly HG01891.2.sanitized.fa" in 0.7703 seconds and 51.9 Mi memory
Issued job 'cactus_cons' kind-cactus_cons/instance-ebopfe6o v1 with job batch system ID: 2652 and disk: 222.3 Mi, memory: 55.1 Gi, cores: 64, accelerators: [], preemptible: False
2023-07-05 13:43:32.054234: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/25e2/1d6d/tmpvihxijom/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p'" in 0.7671 seconds and 51.9 Mi memory
2023-07-05 13:43:32.057202: Running the command: "cactus_analyseAssembly HG01952.2.sanitized.fa"
2023-07-05 13:43:32.086071: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/84db/9857/tmp28inis3w/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p'" in 0.8229 seconds and 17.8 Mi memory
2023-07-05 13:43:32.087951: Running the command: "cactus_analyseAssembly HG02109.1.sanitized.fa"
2023-07-05 13:43:32.110200: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/9c6d/e03b/tmpruchst4b/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p'" in 0.7334 seconds and 21.4 Mi memory
2023-07-05 13:43:32.111975: Running the command: "cactus_analyseAssembly HG01106.2.sanitized.fa"
2023-07-05 13:43:32.112322: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/b277/ebb3/tmpihgic7mc/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p'" in 0.8444 seconds and 20.5 Mi memory
2023-07-05 13:43:32.114025: Running the command: "cactus_analyseAssembly HG02148.1.sanitized.fa"
2023-07-05 13:43:32.115408: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/3bd3/8e12/tmpc5ozopjn/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p'" in 0.6075 seconds and 51.9 Mi memory
2023-07-05 13:43:32.118156: Running the command: "cactus_analyseAssembly HG01361.2.sanitized.fa"
2023-07-05 13:43:32.122542: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/11d2/d796/tmphwpikbl6/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p'" in 0.8321 seconds and 17.9 Mi memory
2023-07-05 13:43:32.124388: Running the command: "cactus_analyseAssembly HG03492.2.sanitized.fa"
2023-07-05 13:43:32.131547: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/a598/4a1c/tmp9r_2moyh/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p"
2023-07-05 13:43:32.137148: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/95d8/9029/tmpca13u2zw/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p'" in 0.699 seconds and 19.4 Mi memory
2023-07-05 13:43:32.138284: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/3c56/112f/tmpvai70gcb/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-05 13:43:32.138474: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2e4f/77aa/tmp36sykpa_/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p'" in 0.8624 seconds and 51.9 Mi memory
2023-07-05 13:43:32.139159: Running the command: "cactus_analyseAssembly HG02145.2.sanitized.fa"
2023-07-05 13:43:32.139370: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/21a0/9a48/tmp59i7p0d7/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p"
2023-07-05 13:43:32.140447: Running the command: "cactus_analyseAssembly HG02717.1.sanitized.fa"
2023-07-05 13:43:32.141043: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c5c2/caee/tmpf7ocn6i6/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p"
2023-07-05 13:43:32.142539: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4fbb/da01/tmpsqpg91y0/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p'" in 0.8309 seconds and 17.8 Mi memory
2023-07-05 13:43:32.144584: Running the command: "cactus_analyseAssembly HG03540.2.sanitized.fa"
2023-07-05 13:43:32.149137: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/98a8/bac9/tmpzgsigf9c/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p'" in 0.5562 seconds and 18.9 Mi memory
Got message from job at time 07-05-2023 13:43:32: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 7 Total-length: 86488856 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 53374262 Median-sequence-length: 229077 Max-sequence-length: 53374262 Min-sequence-length: 69392

2023-07-05 13:43:32.150197: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1911/14f4/tmp_qr_nly5/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p'" in 0.7742 seconds and 17.9 Mi memory
2023-07-05 13:43:32.151615: Running the command: "cactus_analyseAssembly HG02080.1.sanitized.fa"
2023-07-05 13:43:32.150929: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/129b/3c8e/tmptwcodskp/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p'" in 0.7587 seconds and 18.9 Mi memory
2023-07-05 13:43:32.150828: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/a288/7f0e/tmppy0qdqnp/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p'" in 0.9424 seconds and 24.7 Mi memory
2023-07-05 13:43:32.152298: Running the command: "cactus_analyseAssembly NA21309.2.sanitized.fa"
2023-07-05 13:43:32.152723: Running the command: "cactus_analyseAssembly HG03492.1.sanitized.fa"
2023-07-05 13:43:32.153018: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/0621/3d5f/tmp7ag6jzdc/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p"
2023-07-05 13:43:32.154568: Running the command: "cactus_analyseAssembly HG02148.2.sanitized.fa"
2023-07-05 13:43:32.155998: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ebb5/14b0/tmpni5sve0o/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p'" in 0.7046 seconds and 17.9 Mi memory
2023-07-05 13:43:32.157877: Running the command: "cactus_analyseAssembly HG01358.1.sanitized.fa"
2023-07-05 13:43:32.158573: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/8de7/1757/tmp0usj0uyk/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p'" in 0.7267 seconds and 25.0 Mi memory
2023-07-05 13:43:32.158453: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/1c33/493d/tmpyb6duga8/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p"
2023-07-05 13:43:32.160444: Running the command: "cactus_analyseAssembly HG01358.2.sanitized.fa"
2023-07-05 13:43:32.162189: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/368c/607e/tmp93f0112s/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p'" in 0.9452 seconds and 18.9 Mi memory
2023-07-05 13:43:32.162610: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/0b74/0f78/tmp03i78rcb/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p'" in 0.9844 seconds and 51.9 Mi memory
2023-07-05 13:43:32.165156: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/7d5c/564b/tmp90tgo2di/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p"
2023-07-05 13:43:32.165620: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f4bb/707f/tmpimx979xk/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p'" in 0.7243 seconds and 25.9 Mi memory
2023-07-05 13:43:32.166394: Running the command: "cactus_analyseAssembly HG01123.2.sanitized.fa"
2023-07-05 13:43:32.166496: Running the command: "cactus_analyseAssembly HG03579.1.sanitized.fa"
2023-07-05 13:43:32.167724: Running the command: "cactus_analyseAssembly HG02559.1.sanitized.fa"
2023-07-05 13:43:32.167727: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/aa68/84ee/tmpf20agmzn/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-05 13:43:32.168333: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c6dd/85da/tmpdb16wm16/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p"
2023-07-05 13:43:32.169085: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2d42/65ef/tmpxzb3wcvk/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p"
2023-07-05 13:43:32.170156: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/f701/a554/tmp7hhwsd7p/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p'" in 0.9821 seconds and 51.9 Mi memory
2023-07-05 13:43:32.170174: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/8522/11ec/tmp7p9brtk7/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p'" in 1.007 seconds and 51.9 Mi memory
2023-07-05 13:43:32.170225: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e8d1/47bc/tmptf_9wy5w/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p"
2023-07-05 13:43:32.170604: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/15e3/5c5c/tmpjm0wsba6/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p"
2023-07-05 13:43:32.173253: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1332/c99f/tmpiwbpee_h/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p"
2023-07-05 13:43:32.173628: Running the command: "cactus_analyseAssembly HG01358.1.sanitized.fa"
2023-07-05 13:43:32.173875: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/da13/dce7/tmpfbw_m3cz/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-05 13:43:32.174295: Running the command: "cactus_analyseAssembly HG00438.2.sanitized.fa"
2023-07-05 13:43:32.175170: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f3aa/5dc8/tmpl2n1a399/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p"
2023-07-05 13:43:32.176504: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/6807/7f88/tmp0gzxpmfm/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p"
2023-07-05 13:43:32.176976: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e9ac/ba00/tmpevay_23g/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p"
2023-07-05 13:43:32.178702: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/41d2/83f6/tmp4tpv61f7/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p'" in 0.9557 seconds and 65.0 Mi memory
2023-07-05 13:43:32.179701: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/89e6/19e9/tmp26mwco1n/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p"
2023-07-05 13:43:32.180455: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/13db/41f3/tmpxg2qm4nc/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p"
2023-07-05 13:43:32.180690: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/2018/afe8/tmpcss40dmq/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p'" in 0.9781 seconds and 51.9 Mi memory
2023-07-05 13:43:32.181416: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/7646/d1be/tmpz3lgzblf/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p"
2023-07-05 13:43:32.181727: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/8733/65db/tmpmemch6ji/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p"
2023-07-05 13:43:32.182220: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/900d/cb3b/tmp5bsfovue/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p"
2023-07-05 13:43:32.182710: Running the command: "cactus_analyseAssembly HG02257.2.sanitized.fa"
2023-07-05 13:43:32.182758: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4763/cf9f/tmp3sfmzx43/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-05 13:43:32.183118: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/3697/5eac/tmp0ddkkgfr/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p"
2023-07-05 13:43:32.183276: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/6dd6/32ea/tmpuzzl7v_x/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p"
2023-07-05 13:43:32.183071: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/a679/a470/tmpeos2h5cx/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p"
2023-07-05 13:43:32.184172: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/6785/9a0f/tmp317lsebd/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p'" in 0.7108 seconds and 18.1 Mi memory
2023-07-05 13:43:32.184088: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/3adc/5377/tmpar8z5dip/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p"
2023-07-05 13:43:32.184603: Running the command: "cactus_analyseAssembly HG02622.2.sanitized.fa"
2023-07-05 13:43:32.185180: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/b1b8/c8a3/tmp6af282lk/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p"
2023-07-05 13:43:32.205297: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/56fa/5870/tmpvlivcs92/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p'" in 0.9959 seconds and 56.0 Mi memory
2023-07-05 13:43:32.209535: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/d45b/8b46/tmpp3i0xlqh/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p'" in 0.7085 seconds and 51.9 Mi memory
2023-07-05 13:43:32.211688: Running the command: "cactus_analyseAssembly NA18906.1.sanitized.fa"
2023-07-05 13:43:32.211690: Running the command: "cactus_analyseAssembly NA18906.2.sanitized.fa"
2023-07-05 13:43:32.211977: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/d39f/a7db/tmpfxcdhiww/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p'" in 1.0085 seconds and 51.9 Mi memory
2023-07-05 13:43:32.214247: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/b865/f70e/tmp_cy6on4v/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p'" in 0.9914 seconds and 51.9 Mi memory
2023-07-05 13:43:32.215172: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/23c5/5ac2/tmp5z3qyec7/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p'" in 0.703 seconds and 51.9 Mi memory
2023-07-05 13:43:32.215678: Running the command: "cactus_analyseAssembly HG01175.2.sanitized.fa"
2023-07-05 13:43:32.217453: Running the command: "cactus_analyseAssembly HG01361.1.sanitized.fa"
2023-07-05 13:43:32.217821: Running the command: "cactus_analyseAssembly HG01361.2.sanitized.fa"
2023-07-05 13:43:32.233312: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1816/337b/tmpywrgnv3b/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p"
2023-07-05 13:43:32.237522: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/bb9a/53c6/tmpl87d9izt/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p"
2023-07-05 13:43:32.240176: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1757/e1c9/tmp86y7u554/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 0.8575 seconds and 51.8 Mi memory
2023-07-05 13:43:32.242118: Running the command: "cactus_analyseAssembly GRCh38.sanitized.fa"
2023-07-05 13:43:32.282913: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d53/e5f0/tmpaq26f1de/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p"
2023-07-05 13:43:32.293917: Successfully ran: "cactus_analyseAssembly HG02055.2.sanitized.fa" in 0.4624 seconds and 22.5 Mi memory
2023-07-05 13:43:32.325389: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c46d/8044/tmp_axih3mz/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p"
2023-07-05 13:43:32.326811: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/d326/7f2a/tmp61sso6yv/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p"
2023-07-05 13:43:32.335224: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/5bba/c805/tmp5tfevr0q/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
2023-07-05 13:43:32.360654: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/0529/9fa0/tmp138_4m_8/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p"
2023-07-05 13:43:32.370458: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/2288/1ebb/tmplqxx60a3/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p"
2023-07-05 13:43:32.386047: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/bf6c/bb7e/tmpcsk0mq0j/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p"
2023-07-05 13:43:32.390759: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/104b/bc59/tmpuuw0caje/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p"
2023-07-05 13:43:32.394469: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/6c8f/7ae1/tmpa_hllmud/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p"
2023-07-05 13:43:32.394588: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/e8c0/f4a8/tmpcu04g79f/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p"
2023-07-05 13:43:32.402093: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/3775/b543/tmpnls2587f/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p"
2023-07-05 13:43:32.402543: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/0568/7dba/tmpdcu1lz6l/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p"
2023-07-05 13:43:32.405315: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/2eb6/6d4c/tmpxxapf2ms/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
2023-07-05 13:43:32.406855: Successfully ran: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa" in 0.494 seconds and 4.1 Mi memory
2023-07-05 13:43:32.406366: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/f434/2577/tmpfu8g925x/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p"
2023-07-05 13:43:32.411934: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/5737/7e51/tmpdeuyr80a/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p"
2023-07-05 13:43:32.412160: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/5f06/13c7/tmpmrkg3waq/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p"
2023-07-05 13:43:32.412358: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/c74c/f456/tmpi8eqdmae/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p"
2023-07-05 13:43:32.412846: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/a02a/d0dd/tmptq39omj2/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p"
2023-07-05 13:43:32.417072: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/63bc/0f22/tmpkojo7np1/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
2023-07-05 13:43:32.419409: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/f3e5/2be4/tmpfpwmj3ho/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p"
2023-07-05 13:43:32.420113: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/26e5/69f5/tmp6vnochh5/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:43:32.420305: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/688d/8d48/tmpk5gddmhx/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p"
2023-07-05 13:43:32.420324: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/616e/2ed0/tmpjzb_hnya/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
2023-07-05 13:43:32.420753: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/c51c/d0ed/tmp95swsxa2/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p"
2023-07-05 13:43:32.421150: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/2e3e/8ec1/tmpwxd5o3dv/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p"
2023-07-05 13:43:32.421159: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/ad7d/a5f6/tmp4utd_ie7/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p"
2023-07-05 13:43:32.424131: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/c953/1714/tmp676sg7_w/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p"
2023-07-05 13:43:32.424935: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/7f9b/e3be/tmp4ydp76k1/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p"
2023-07-05 13:43:32.425326: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/5315/16ec/tmpwlzpnsdh/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
2023-07-05 13:43:32.428094: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/6371/1790/tmpjtwp93sf/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p"
2023-07-05 13:43:32.428163: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/1962/4173/tmpi8_bbg50/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-05 13:43:32.429688: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/60bd/27cf/tmpqbmji1ow/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p"
2023-07-05 13:43:32.430260: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/bdcf/cd16/tmptm9x_qsy/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p"
2023-07-05 13:43:32.430337: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/5629/ce6c/tmp8_z05e85/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-05 13:43:32.430793: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/5155/4577/tmp0747pnmh/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p"
2023-07-05 13:43:32.432043: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d66/4ac0/tmp_yyt0nim/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p"
2023-07-05 13:43:32.432949: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/4712/8e11/tmpmoarujur/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p"
2023-07-05 13:43:32.433965: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/7b05/2e56/tmpo3aq9ivx/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p"
2023-07-05 13:43:32.439973: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/40f0/3e08/tmp_dnd9mqn/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
2023-07-05 13:43:32.482781: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 0.4999 seconds and 22.7 Mi memory
2023-07-05 13:43:32.484312: Successfully ran: "cactus_analyseAssembly NA21309.2.sanitized.fa" in 0.3312 seconds and 17.8 Mi memory
2023-07-05 13:43:32.492805: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 0.3393 seconds and 18.9 Mi memory
2023-07-05 13:43:32.496714: Successfully ran: "cactus_analyseAssembly HG02717.1.sanitized.fa" in 0.3554 seconds and 51.8 Mi memory
2023-07-05 13:43:32.508867: Successfully ran: "cactus_analyseAssembly HG01358.2.sanitized.fa" in 0.3476 seconds and 25.0 Mi memory
2023-07-05 13:43:32.508936: Successfully ran: "cactus_analyseAssembly HG03540.2.sanitized.fa" in 0.3636 seconds and 17.8 Mi memory
2023-07-05 13:43:32.515014: Successfully ran: "cactus_analyseAssembly HG02559.1.sanitized.fa" in 0.3464 seconds and 25.8 Mi memory
2023-07-05 13:43:32.517331: Successfully ran: "cactus_analyseAssembly HG03486.1.sanitized.fa" in 0.5136 seconds and 51.9 Mi memory
2023-07-05 13:43:32.530034: Successfully ran: "cactus_analyseAssembly HG02109.1.sanitized.fa" in 0.4412 seconds and 17.8 Mi memory
2023-07-05 13:43:32.532117: Successfully ran: "cactus_analyseAssembly HG03492.2.sanitized.fa" in 0.4069 seconds and 17.8 Mi memory
2023-07-05 13:43:32.532162: Successfully ran: "cactus_analyseAssembly HG01358.1.sanitized.fa" in 0.3735 seconds and 17.8 Mi memory
2023-07-05 13:43:32.532634: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 0.3925 seconds and 19.4 Mi memory
2023-07-05 13:43:32.539139: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/1a3d/f079/tmp1r5n80qw/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p"
2023-07-05 13:43:32.540881: Successfully ran: "cactus_analyseAssembly HG03453.1.sanitized.fa" in 0.3537 seconds and 17.8 Mi memory
2023-07-05 13:43:32.541485: Successfully ran: "cactus_analyseAssembly HG02148.1.sanitized.fa" in 0.4266 seconds and 20.4 Mi memory
2023-07-05 13:43:32.547979: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 0.4352 seconds and 21.4 Mi memory
2023-07-05 13:43:32.555741: Successfully ran: "cactus_analyseAssembly HG01123.1.sanitized.fa" in 0.9262 seconds and 75.1 Mi memory
2023-07-05 13:43:32.559725: Successfully ran: "cactus_analyseAssembly NA18906.1.sanitized.fa" in 0.3472 seconds and 51.8 Mi memory
2023-07-05 13:43:32.571270: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1816/337b/tmpywrgnv3b/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p'" in 0.3366 seconds and 17.8 Mi memory
2023-07-05 13:43:32.573089: Successfully ran: "cactus_analyseAssembly HG01361.1.sanitized.fa" in 0.3548 seconds and 51.9 Mi memory
2023-07-05 13:43:32.573517: Running the command: "cactus_analyseAssembly NA18906.2.sanitized.fa"
2023-07-05 13:43:32.576904: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/bb9a/53c6/tmpl87d9izt/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p'" in 0.3381 seconds and 18.1 Mi memory
2023-07-05 13:43:32.578900: Running the command: "cactus_analyseAssembly NA21309.1.sanitized.fa"
2023-07-05 13:43:32.578768: Successfully ran: "cactus_analyseAssembly HG00741.1.sanitized.fa" in 0.9115 seconds and 67.8 Mi memory
2023-07-05 13:43:32.585388: Successfully ran: "cactus_analyseAssembly HG01952.2.sanitized.fa" in 0.5274 seconds and 51.9 Mi memory
2023-07-05 13:43:32.591869: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/d60b/6bea/tmp66v0ibyo/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:43:32.594363: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 0.3515 seconds and 51.9 Mi memory
2023-07-05 13:43:32.613095: Successfully ran: "cactus_analyseAssembly HG01071.2.sanitized.fa" in 0.9683 seconds and 153.9 Mi memory
2023-07-05 13:43:32.648572: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/d326/7f2a/tmp61sso6yv/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p'" in 0.3205 seconds and 17.9 Mi memory
2023-07-05 13:43:32.650474: Running the command: "cactus_analyseAssembly HG02818.2.sanitized.fa"
2023-07-05 13:43:32.657074: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c46d/8044/tmp_axih3mz/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p'" in 0.3305 seconds and 18.1 Mi memory
2023-07-05 13:43:32.658787: Running the command: "cactus_analyseAssembly HG02717.2.sanitized.fa"
2023-07-05 13:43:32.678476: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/b385/718d/tmp25wi49oy/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p"
2023-07-05 13:43:32.707345: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 0.5884 seconds and 51.9 Mi memory
2023-07-05 13:43:32.719870: Successfully ran: "cactus_analyseAssembly HG02080.1.sanitized.fa" in 0.5675 seconds and 18.9 Mi memory
2023-07-05 13:43:32.740190: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/5bba/c805/tmp5tfevr0q/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p'" in 0.4038 seconds and 51.9 Mi memory
2023-07-05 13:43:32.742126: Running the command: "cactus_analyseAssembly HG00621.2.sanitized.fa"
2023-07-05 13:43:32.756884: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/a598/4a1c/tmp9r_2moyh/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p'" in 0.624 seconds and 51.9 Mi memory
2023-07-05 13:43:32.759812: Running the command: "cactus_analyseAssembly NA20129.2.sanitized.fa"
2023-07-05 13:43:32.770687: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c5c2/caee/tmpf7ocn6i6/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p'" in 0.6284 seconds and 51.9 Mi memory
2023-07-05 13:43:32.773640: Running the command: "cactus_analyseAssembly HG02886.2.sanitized.fa"
2023-07-05 13:43:32.776445: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 0.6211 seconds and 24.8 Mi memory
2023-07-05 13:43:32.778325: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/3c56/112f/tmpvai70gcb/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p'" in 0.6385 seconds and 51.9 Mi memory
2023-07-05 13:43:32.783289: Running the command: "cactus_analyseAssembly HG01258.1.sanitized.fa"
2023-07-05 13:43:32.785584: Successfully ran: "cactus_analyseAssembly HG00438.2.sanitized.fa" in 0.6105 seconds and 51.8 Mi memory
2023-07-05 13:43:32.785810: Successfully ran: "cactus_analyseAssembly HG03579.1.sanitized.fa" in 0.6185 seconds and 18.8 Mi memory
2023-07-05 13:43:32.792991: Successfully ran: "cactus_analyseAssembly HG01358.1.sanitized.fa" in 0.6185 seconds and 51.8 Mi memory
2023-07-05 13:43:32.795618: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 0.6043 seconds and 51.8 Mi memory
Got message from job at time 07-05-2023 13:43:32: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 5 Total-length: 91142409 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 89325142 Median-sequence-length: 99811 Max-sequence-length: 89325142 Min-sequence-length: 35425

2023-07-05 13:43:32.795837: Successfully ran: "cactus_analyseAssembly HG01123.2.sanitized.fa" in 0.6288 seconds and 51.8 Mi memory
2023-07-05 13:43:32.796637: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 0.5781 seconds and 51.9 Mi memory
2023-07-05 13:43:32.797832: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 0.8998 seconds and 51.9 Mi memory
2023-07-05 13:43:32.799245: Successfully ran: "cactus_analyseAssembly HG01175.2.sanitized.fa" in 0.5829 seconds and 51.8 Mi memory
2023-07-05 13:43:32.802436: Successfully ran: "cactus_analyseAssembly HG01361.1.sanitized.fa" in 0.924 seconds and 76.9 Mi memory
2023-07-05 13:43:32.806738: Successfully ran: "cactus_analyseAssembly HG02622.2.sanitized.fa" in 0.6214 seconds and 51.9 Mi memory
2023-07-05 13:43:32.808640: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/15e3/5c5c/tmpjm0wsba6/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p'" in 0.6367 seconds and 61.7 Mi memory
2023-07-05 13:43:32.809594: Successfully ran: "cactus_analyseAssembly HG02257.2.sanitized.fa" in 0.6261 seconds and 65.0 Mi memory
2023-07-05 13:43:32.810080: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c6dd/85da/tmpdb16wm16/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p'" in 0.6404 seconds and 62.4 Mi memory
2023-07-05 13:43:32.810283: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/6807/7f88/tmp0gzxpmfm/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p'" in 0.6326 seconds and 51.9 Mi memory
2023-07-05 13:43:32.810620: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/3144/a83c/tmpsui3y0r3/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p'" in 0.6373 seconds and 51.9 Mi memory
2023-07-05 13:43:32.811642: Running the command: "cactus_analyseAssembly HG03516.1.sanitized.fa"
2023-07-05 13:43:32.811585: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e8d1/47bc/tmptf_9wy5w/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p'" in 0.6401 seconds and 58.4 Mi memory
2023-07-05 13:43:32.812142: Successfully ran: "cactus_analyseAssembly NA18906.2.sanitized.fa" in 0.5996 seconds and 56.0 Mi memory
2023-07-05 13:43:32.817052: Running the command: "cactus_analyseAssembly HG03540.2.sanitized.fa"
2023-07-05 13:43:32.817719: Running the command: "cactus_analyseAssembly HG02622.2.sanitized.fa"
2023-07-05 13:43:32.820554: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e9ac/ba00/tmpevay_23g/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p'" in 0.6423 seconds and 18.4 Mi memory
2023-07-05 13:43:32.823255: Running the command: "cactus_analyseAssembly HG02818.1.sanitized.fa"
2023-07-05 13:43:32.829204: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2d42/65ef/tmpxzb3wcvk/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p'" in 0.659 seconds and 51.9 Mi memory
2023-07-05 13:43:32.829381: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/6dd6/32ea/tmpuzzl7v_x/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p'" in 0.645 seconds and 51.9 Mi memory
2023-07-05 13:43:32.829855: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/870e/212e/tmplfypas11/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p'" in 0.6408 seconds and 51.9 Mi memory
2023-07-05 13:43:32.832457: Running the command: "cactus_analyseAssembly HG01361.1.sanitized.fa"
2023-07-05 13:43:32.832730: Running the command: "cactus_analyseAssembly HG03453.2.sanitized.fa"
2023-07-05 13:43:32.832850: Running the command: "cactus_analyseAssembly HG03453.1.sanitized.fa"
2023-07-05 13:43:32.839538: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/3697/5eac/tmp0ddkkgfr/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p'" in 0.6553 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:43:32: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 13 Total-length: 89802355 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23809076 Median-sequence-length: 66642 Max-sequence-length: 35328903 Min-sequence-length: 31578

2023-07-05 13:43:32.840494: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/c79b/19f7/tmpk8cp9x19/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p"
2023-07-05 13:43:32.842096: Running the command: "cactus_analyseAssembly HG01071.2.sanitized.fa"
2023-07-05 13:43:32.843412: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4763/cf9f/tmp3sfmzx43/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p'" in 0.6596 seconds and 51.9 Mi memory
2023-07-05 13:43:32.844428: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/da13/dce7/tmpfbw_m3cz/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p'" in 0.6693 seconds and 51.9 Mi memory
2023-07-05 13:43:32.844755: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/767e/85d1/tmp6kysanel/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p"
2023-07-05 13:43:32.846128: Running the command: "cactus_analyseAssembly HG00621.1.sanitized.fa"
2023-07-05 13:43:32.847174: Running the command: "cactus_analyseAssembly HG01175.2.sanitized.fa"
Got message from job at time 07-05-2023 13:43:32: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 7 Total-length: 92512131 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32588801 Median-sequence-length: 8060276 Max-sequence-length: 38159757 Min-sequence-length: 39821

2023-07-05 13:43:32.856809: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1332/c99f/tmpiwbpee_h/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p'" in 0.6822 seconds and 51.9 Mi memory
2023-07-05 13:43:32.859455: Running the command: "cactus_analyseAssembly HG03579.1.sanitized.fa"
2023-07-05 13:43:32.861698: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f3aa/5dc8/tmpl2n1a399/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p'" in 0.6854 seconds and 51.9 Mi memory
2023-07-05 13:43:32.864306: Running the command: "cactus_analyseAssembly HG02886.1.sanitized.fa"
2023-07-05 13:43:32.902540: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 0.9742 seconds and 153.9 Mi memory
2023-07-05 13:43:32.915463: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/a2bc/468f/tmp2z20w4n_/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-05 13:43:32.926632: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/97e2/dbee/tmpyh5zy9g1/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p"
Got message from job at time 07-05-2023 13:43:32: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 6 Total-length: 91583366 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20262426 Median-sequence-length: 16530642 Max-sequence-length: 30574846 Min-sequence-length: 4848742

2023-07-05 13:43:32.950322: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/19a6/7184/tmpppuyh5uq/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
2023-07-05 13:43:32.955060: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/92a6/6da8/tmpzujrrjso/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
2023-07-05 13:43:32.955838: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d62/e2af/tmpzf3wfoob/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p"
2023-07-05 13:43:32.956989: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/febe/a63c/tmpyx8_v_sk/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
2023-07-05 13:43:32.959669: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/1de5/c888/tmpjfoqxtag/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p"
2023-07-05 13:43:32.959896: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/ba05/87cb/tmp_uofj3h2/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p"
2023-07-05 13:43:32.965206: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/ea01/fd1a/tmphpbx4kgw/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p"
2023-07-05 13:43:32.972326: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/43c9/5d7a/tmpc1gpswxb/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p"
2023-07-05 13:43:32.978990: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/d595/6e15/tmpuli18ztp/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p"
2023-07-05 13:43:32.987223: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/a540/28ce/tmpqq0dm9vx/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:43:32.989326: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/3f35/7d42/tmpx15ljce3/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p"
2023-07-05 13:43:32.991746: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/baa3/c1c8/tmpjd_7sawf/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-05 13:43:32.996990: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/5557/a42b/tmpigmboil9/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p"
2023-07-05 13:43:32.999665: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/9b48/3a5a/tmpbftkvoms/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p"
2023-07-05 13:43:33.000307: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/1fde/ff84/tmp5wwdtxqw/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p"
2023-07-05 13:43:32.998888: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/86c3/7a4e/tmp3s14jj4n/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p"
2023-07-05 13:43:33.001286: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/029b/44a1/tmpc1lh3zhw/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p"
2023-07-05 13:43:33.001626: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/4e7c/678c/tmpnku3tux0/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p"
2023-07-05 13:43:33.002245: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/b384/508e/tmpvxr0adu1/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-05 13:43:33.009742: Successfully ran: "cactus_analyseAssembly NA18906.2.sanitized.fa" in 0.4353 seconds and 17.8 Mi memory
2023-07-05 13:43:33.019080: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/81c2/0476/tmp4cetb4b7/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p"
2023-07-05 13:43:33.019773: Successfully ran: "cactus_analyseAssembly NA21309.1.sanitized.fa" in 0.44 seconds and 17.8 Mi memory
2023-07-05 13:43:33.022713: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/b5cb/fd2d/tmpfp05994n/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p"
2023-07-05 13:43:33.025205: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/25a7/232f/tmpofbrlt4z/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p"
2023-07-05 13:43:33.025564: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/5cf8/53be/tmpc71trv0b/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p"
2023-07-05 13:43:33.034100: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/31b6/d7cd/tmphdha1chw/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p"
2023-07-05 13:43:33.034057: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/598a/96be/tmp9q2ck09i/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p"
2023-07-05 13:43:33.037228: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/d10b/0d39/tmp8fbxeu67/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p"
2023-07-05 13:43:33.045934: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/225e/f55b/tmpi17f52dg/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p"
2023-07-05 13:43:33.046093: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/2115/ebe4/tmpdk8noful/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p"
2023-07-05 13:43:33.051403: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/ad64/667b/tmpgi_ecvoy/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p"
2023-07-05 13:43:33.054804: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/e178/5306/tmpynouqbq1/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p"
2023-07-05 13:43:33.061415: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/3821/a29f/tmpqv08b8lq/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p"
2023-07-05 13:43:33.061528: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/f405/bb29/tmpj4ehupru/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
2023-07-05 13:43:33.066917: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/308b/aa94/tmp93ghyr0e/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p"
2023-07-05 13:43:33.067376: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/383b/a994/tmpgg00fw42/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-05 13:43:33.064539: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/684c/2914/tmp5apf4q_g/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p"
2023-07-05 13:43:33.072801: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/56a6/a114/tmplek1gvr4/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p"
2023-07-05 13:43:33.075669: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/1825/9e7d/tmpx9_3toco/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:43:33.077631: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 0.4263 seconds and 17.8 Mi memory
2023-07-05 13:43:33.085533: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/1de4/05c0/tmpovbb0ji3/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p"
2023-07-05 13:43:33.090874: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/4340/4b58/tmpoa1c4301/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
2023-07-05 13:43:33.091395: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/fa02/fd7d/tmpxp_hjb9n/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p"
2023-07-05 13:43:33.097436: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/8cc0/998d/tmp_0nskzh6/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p"
2023-07-05 13:43:33.103908: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/eeef/a38c/tmp111f9rjn/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p"
2023-07-05 13:43:33.105711: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/6091/3ee7/tmp6576syb5/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p"
2023-07-05 13:43:33.107139: Successfully ran: "cactus_analyseAssembly HG02717.2.sanitized.fa" in 0.4475 seconds and 17.8 Mi memory
2023-07-05 13:43:33.115104: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/df81/aa31/tmpejxr619y/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p"
2023-07-05 13:43:33.116567: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/0320/9e11/tmpcv2xb_tq/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p"
2023-07-05 13:43:33.125744: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/8349/d965/tmpuksmojir/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p"
2023-07-05 13:43:33.177634: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/c444/8138/tmp1cnz4ynx/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p'" in 0.7362 seconds and 22.2 Mi memory
2023-07-05 13:43:33.181521: Running the command: "cactus_analyseAssembly HG00733.1.sanitized.fa"
2023-07-05 13:43:33.189165: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/40f0/3e08/tmp_dnd9mqn/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p'" in 0.7479 seconds and 7.0 Mi memory
2023-07-05 13:43:33.193893: Running the command: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa"
2023-07-05 13:43:33.200587: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/1962/4173/tmpi8_bbg50/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p'" in 0.7712 seconds and 51.9 Mi memory
2023-07-05 13:43:33.204744: Running the command: "cactus_analyseAssembly HG03516.2.sanitized.fa"
2023-07-05 13:43:33.209231: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/688d/8d48/tmpk5gddmhx/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p'" in 0.7877 seconds and 51.8 Mi memory
2023-07-05 13:43:33.213055: Running the command: "cactus_analyseAssembly HG02886.1.sanitized.fa"
2023-07-05 13:43:33.218609: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 0.4756 seconds and 51.9 Mi memory
2023-07-05 13:43:33.229078: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/616e/2ed0/tmpjzb_hnya/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p'" in 0.8074 seconds and 51.9 Mi memory
2023-07-05 13:43:33.233144: Running the command: "cactus_analyseAssembly HG02109.2.sanitized.fa"
2023-07-05 13:43:33.277034: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/60bd/27cf/tmpqbmji1ow/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p'" in 0.846 seconds and 24.6 Mi memory
2023-07-05 13:43:33.278480: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/f3e5/2be4/tmpfpwmj3ho/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p'" in 0.858 seconds and 25.9 Mi memory
2023-07-05 13:43:33.280486: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/5f06/13c7/tmpmrkg3waq/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p'" in 0.867 seconds and 24.5 Mi memory
2023-07-05 13:43:33.281206: Running the command: "cactus_analyseAssembly HG01243.2.sanitized.fa"
2023-07-05 13:43:33.282823: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
2023-07-05 13:43:33.282808: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/4712/8e11/tmpmoarujur/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p'" in 0.8488 seconds and 26.1 Mi memory
2023-07-05 13:43:33.284643: Running the command: "cactus_analyseAssembly HG01106.1.sanitized.fa"
2023-07-05 13:43:33.287225: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/26e5/69f5/tmp6vnochh5/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p'" in 0.866 seconds and 51.9 Mi memory
2023-07-05 13:43:33.287331: Running the command: "cactus_analyseAssembly NA20129.1.sanitized.fa"
2023-07-05 13:43:33.288098: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/6c8f/7ae1/tmpa_hllmud/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p'" in 0.8923 seconds and 17.9 Mi memory
2023-07-05 13:43:33.291533: Running the command: "cactus_analyseAssembly HG01109.1.sanitized.fa"
2023-07-05 13:43:33.291535: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/5155/4577/tmp0747pnmh/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p'" in 0.8595 seconds and 19.2 Mi memory
2023-07-05 13:43:33.292535: Running the command: "cactus_analyseAssembly HG01243.1.sanitized.fa"
2023-07-05 13:43:33.293720: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/c74c/f456/tmpi8eqdmae/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p'" in 0.88 seconds and 51.9 Mi memory
2023-07-05 13:43:33.294444: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/ad7d/a5f6/tmp4utd_ie7/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p'" in 0.872 seconds and 25.0 Mi memory
2023-07-05 13:43:33.295735: Running the command: "cactus_analyseAssembly HG03492.2.sanitized.fa"
2023-07-05 13:43:33.297404: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/2eb6/6d4c/tmpxxapf2ms/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p'" in 0.8908 seconds and 51.9 Mi memory
2023-07-05 13:43:33.298151: Running the command: "cactus_analyseAssembly HG03453.2.sanitized.fa"
2023-07-05 13:43:33.298824: Running the command: "cactus_analyseAssembly HG02630.2.sanitized.fa"
2023-07-05 13:43:33.298886: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/5629/ce6c/tmp8_z05e85/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p'" in 0.8675 seconds and 24.6 Mi memory
2023-07-05 13:43:33.301540: Running the command: "cactus_analyseAssembly HG00621.2.sanitized.fa"
2023-07-05 13:43:33.302127: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/c953/1714/tmp676sg7_w/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p'" in 0.8769 seconds and 51.8 Mi memory
2023-07-05 13:43:33.303148: Running the command: "cactus_analyseAssembly HG01106.2.sanitized.fa"
2023-07-05 13:43:33.304178: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/2e3e/8ec1/tmpwxd5o3dv/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p'" in 0.8819 seconds and 51.9 Mi memory
2023-07-05 13:43:33.306013: Running the command: "cactus_analyseAssembly HG01978.1.sanitized.fa"
2023-07-05 13:43:33.308470: Running the command: "cactus_analyseAssembly HG01891.2.sanitized.fa"
2023-07-05 13:43:33.308522: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/c51c/d0ed/tmp95swsxa2/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p'" in 0.8865 seconds and 51.9 Mi memory
2023-07-05 13:43:33.310527: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/0529/9fa0/tmp138_4m_8/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p'" in 0.9485 seconds and 20.2 Mi memory
2023-07-05 13:43:33.310851: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/0568/7dba/tmpdcu1lz6l/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p'" in 0.907 seconds and 55.0 Mi memory
2023-07-05 13:43:33.312307: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/5315/16ec/tmpwlzpnsdh/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p'" in 0.8859 seconds and 51.9 Mi memory
2023-07-05 13:43:33.312642: Running the command: "cactus_analyseAssembly HG00741.2.sanitized.fa"
2023-07-05 13:43:33.315112: Running the command: "cactus_analyseAssembly HG00673.1.sanitized.fa"
2023-07-05 13:43:33.315322: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/e8c0/f4a8/tmpcu04g79f/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p'" in 0.9195 seconds and 18.1 Mi memory
2023-07-05 13:43:33.315431: Running the command: "cactus_analyseAssembly HG01978.2.sanitized.fa"
2023-07-05 13:43:33.316270: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/7f9b/e3be/tmp4ydp76k1/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p'" in 0.8903 seconds and 51.9 Mi memory
2023-07-05 13:43:33.316265: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/5737/7e51/tmpdeuyr80a/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p'" in 0.903 seconds and 51.9 Mi memory
2023-07-05 13:43:33.317156: Running the command: "cactus_analyseAssembly HG02717.1.sanitized.fa"
2023-07-05 13:43:33.319748: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d66/4ac0/tmp_yyt0nim/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p'" in 0.8865 seconds and 56.3 Mi memory
2023-07-05 13:43:33.319829: Running the command: "cactus_analyseAssembly HG02818.2.sanitized.fa"
2023-07-05 13:43:33.320145: Running the command: "cactus_analyseAssembly HG01358.2.sanitized.fa"
2023-07-05 13:43:33.320436: Running the command: "cactus_analyseAssembly HG03579.2.sanitized.fa"
2023-07-05 13:43:33.324311: Running the command: "cactus_analyseAssembly HG02622.1.sanitized.fa"
2023-07-05 13:43:33.325027: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/bdcf/cd16/tmptm9x_qsy/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p'" in 0.8937 seconds and 51.9 Mi memory
2023-07-05 13:43:33.325738: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/f434/2577/tmpfu8g925x/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p'" in 0.9184 seconds and 51.9 Mi memory
2023-07-05 13:43:33.326178: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/7b05/2e56/tmpo3aq9ivx/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p'" in 0.8911 seconds and 51.9 Mi memory
2023-07-05 13:43:33.327245: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/a02a/d0dd/tmptq39omj2/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p'" in 0.9131 seconds and 56.8 Mi memory
2023-07-05 13:43:33.329404: Running the command: "cactus_analyseAssembly HG02630.1.sanitized.fa"
2023-07-05 13:43:33.330056: Running the command: "cactus_analyseAssembly HG01361.1.sanitized.fa"
2023-07-05 13:43:33.330813: Running the command: "cactus_analyseAssembly HG01109.2.sanitized.fa"
2023-07-05 13:43:33.331820: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/3775/b543/tmpnls2587f/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p'" in 0.9284 seconds and 51.9 Mi memory
2023-07-05 13:43:33.332111: Running the command: "cactus_analyseAssembly HG00673.2.sanitized.fa"
2023-07-05 13:43:33.335881: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/104b/bc59/tmpuuw0caje/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p'" in 0.9438 seconds and 54.7 Mi memory
2023-07-05 13:43:33.336138: Running the command: "cactus_analyseAssembly NA21309.1.sanitized.fa"
2023-07-05 13:43:33.339667: Running the command: "cactus_analyseAssembly HG01175.1.sanitized.fa"
2023-07-05 13:43:33.341430: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/6371/1790/tmpjtwp93sf/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p'" in 0.9122 seconds and 24.8 Mi memory
2023-07-05 13:43:33.345518: Running the command: "cactus_analyseAssembly HG00438.1.sanitized.fa"
2023-07-05 13:43:33.348169: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/18b9/d7ad/tmp45oh9ff9/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p'" in 0.9069 seconds and 51.9 Mi memory
2023-07-05 13:43:33.352335: Running the command: "cactus_analyseAssembly HG03540.1.sanitized.fa"
2023-07-05 13:43:33.356797: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/63bc/0f22/tmpkojo7np1/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p'" in 0.9384 seconds and 153.9 Mi memory
2023-07-05 13:43:33.357484: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 0.5968 seconds and 51.8 Mi memory
2023-07-05 13:43:33.358297: Successfully ran: "cactus_analyseAssembly HG02886.2.sanitized.fa" in 0.5838 seconds and 51.9 Mi memory
2023-07-05 13:43:33.360580: Running the command: "cactus_analyseAssembly CHM13.sanitized.fa"
2023-07-05 13:43:33.384155: Successfully ran: "cactus_analyseAssembly HG01258.1.sanitized.fa" in 0.5998 seconds and 51.9 Mi memory
2023-07-05 13:43:33.385060: Successfully ran: "cactus_analyseAssembly HG02257.1.sanitized.fa" in 0.5696 seconds and 58.3 Mi memory
2023-07-05 13:43:33.397807: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 0.5642 seconds and 51.9 Mi memory
2023-07-05 13:43:33.405199: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 0.5909 seconds and 51.9 Mi memory
2023-07-05 13:43:33.406610: Successfully ran: "cactus_analyseAssembly HG02622.2.sanitized.fa" in 0.5882 seconds and 64.0 Mi memory
2023-07-05 13:43:33.408258: Successfully ran: "cactus_analyseAssembly HG01175.2.sanitized.fa" in 0.5603 seconds and 51.9 Mi memory
2023-07-05 13:43:33.411813: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 0.595 seconds and 51.9 Mi memory
2023-07-05 13:43:33.418271: Successfully ran: "cactus_analyseAssembly HG02818.1.sanitized.fa" in 0.5942 seconds and 18.3 Mi memory
2023-07-05 13:43:33.421690: Successfully ran: "cactus_analyseAssembly HG01928.2.sanitized.fa" in 0.6073 seconds and 62.4 Mi memory
2023-07-05 13:43:33.423040: Successfully ran: "cactus_analyseAssembly HG00438.1.sanitized.fa" in 0.6068 seconds and 51.9 Mi memory
2023-07-05 13:43:33.423717: Successfully ran: "cactus_analyseAssembly HG01361.1.sanitized.fa" in 0.5905 seconds and 51.9 Mi memory
2023-07-05 13:43:33.423893: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 0.6114 seconds and 61.7 Mi memory
2023-07-05 13:43:33.427084: Successfully ran: "cactus_analyseAssembly HG03540.2.sanitized.fa" in 0.609 seconds and 51.9 Mi memory
2023-07-05 13:43:33.436374: Successfully ran: "cactus_analyseAssembly HG03453.1.sanitized.fa" in 0.6029 seconds and 51.9 Mi memory
2023-07-05 13:43:33.446836: Successfully ran: "cactus_analyseAssembly HG03579.1.sanitized.fa" in 0.5867 seconds and 51.9 Mi memory
2023-07-05 13:43:33.447367: Successfully ran: "cactus_analyseAssembly HG01071.2.sanitized.fa" in 0.6045 seconds and 51.9 Mi memory
2023-07-05 13:43:33.453687: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 0.6068 seconds and 51.9 Mi memory
2023-07-05 13:43:33.455781: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/21a0/9a48/tmp59i7p0d7/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p'" in 1.3151 seconds and 52.4 Mi memory
2023-07-05 13:43:33.462442: Running the command: "cactus_analyseAssembly HG02630.2.sanitized.fa"
2023-07-05 13:43:33.467355: Successfully ran: "cactus_analyseAssembly HG02886.1.sanitized.fa" in 0.6022 seconds and 51.9 Mi memory
2023-07-05 13:43:33.480289: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/89e6/19e9/tmp26mwco1n/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p'" in 1.2995 seconds and 51.9 Mi memory
2023-07-05 13:43:33.482197: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/1c33/493d/tmpyb6duga8/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 1.3225 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:43:33: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 1 Total-length: 97901005 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 97901005 Median-sequence-length: 97901005 Max-sequence-length: 97901005 Min-sequence-length: 97901005

2023-07-05 13:43:33.487079: Running the command: "cactus_analyseAssembly HG03453.2.sanitized.fa"
2023-07-05 13:43:33.489152: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
2023-07-05 13:43:33.492126: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/b5da/f1de/tmp159n4em6/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p'" in 1.3022 seconds and 58.4 Mi memory
2023-07-05 13:43:33.493002: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/0621/3d5f/tmp7ag6jzdc/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p'" in 1.3387 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:43:33: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 2 Total-length: 96232611 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 96134613 Median-sequence-length: 96134613 Max-sequence-length: 96134613 Min-sequence-length: 97998

2023-07-05 13:43:33.499991: Running the command: "cactus_analyseAssembly HG01071.2.sanitized.fa"
2023-07-05 13:43:33.502888: Running the command: "cactus_analyseAssembly HG01891.1.sanitized.fa"
2023-07-05 13:43:33.508501: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/a679/a470/tmpeos2h5cx/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p'" in 1.3242 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:43:33: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 1 Total-length: 90026957 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 90026957 Median-sequence-length: 90026957 Max-sequence-length: 90026957 Min-sequence-length: 90026957

2023-07-05 13:43:33.514268: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/900d/cb3b/tmp5bsfovue/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p'" in 1.3309 seconds and 52.9 Mi memory
2023-07-05 13:43:33.515428: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/8733/65db/tmpmemch6ji/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p'" in 1.3326 seconds and 56.6 Mi memory
2023-07-05 13:43:33.515571: Running the command: "cactus_analyseAssembly HG01361.2.sanitized.fa"
2023-07-05 13:43:33.517876: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/aa68/84ee/tmpf20agmzn/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p'" in 1.3487 seconds and 154.0 Mi memory
2023-07-05 13:43:33.520917: Running the command: "cactus_analyseAssembly HG02080.1.sanitized.fa"
2023-07-05 13:43:33.522384: Running the command: "cactus_analyseAssembly HG03540.2.sanitized.fa"
2023-07-05 13:43:33.524605: Running the command: "cactus_analyseAssembly HG01106.2.sanitized.fa"
2023-07-05 13:43:33.525327: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/7646/d1be/tmpz3lgzblf/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p'" in 1.3427 seconds and 52.9 Mi memory
2023-07-05 13:43:33.531644: Running the command: "cactus_analyseAssembly HG00673.2.sanitized.fa"
2023-07-05 13:43:33.549605: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/b1b8/c8a3/tmp6af282lk/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p'" in 1.3633 seconds and 51.9 Mi memory
2023-07-05 13:43:33.551596: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/baa6/7326/tmp4kliuq4s/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p"
2023-07-05 13:43:33.556068: Running the command: "cactus_analyseAssembly NA20129.2.sanitized.fa"
2023-07-05 13:43:33.561607: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/5f86/d518/tmpjbgs6azm/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p"
2023-07-05 13:43:33.575658: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/3adc/5377/tmpar8z5dip/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p'" in 1.3903 seconds and 154.0 Mi memory
2023-07-05 13:43:33.580179: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/c043/5a5a/tmp5_83i8oe/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:43:33.582167: Running the command: "cactus_analyseAssembly NA18906.1.sanitized.fa"
2023-07-05 13:43:33.596144: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/b384/508e/tmpvxr0adu1/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p'" in 0.5927 seconds and 23.8 Mi memory
2023-07-05 13:43:33.598260: Running the command: "cactus_analyseAssembly HG00733.1.sanitized.fa"
2023-07-05 13:43:33.595268: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6d53/e5f0/tmpaq26f1de/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p'" in 1.3111 seconds and 61.5 Mi memory
2023-07-05 13:43:33.601152: Running the command: "cactus_analyseAssembly HG00673.2.sanitized.fa"
2023-07-05 13:43:33.605841: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/9b48/3a5a/tmpbftkvoms/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p'" in 0.6048 seconds and 51.8 Mi memory
2023-07-05 13:43:33.608180: Running the command: "cactus_analyseAssembly HG01106.1.sanitized.fa"
2023-07-05 13:43:33.609020: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/225e/f55b/tmpi17f52dg/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p'" in 0.5617 seconds and 24.8 Mi memory
2023-07-05 13:43:33.611130: Running the command: "cactus_analyseAssembly HG02257.2.sanitized.fa"
2023-07-05 13:43:33.614007: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/5557/a42b/tmpigmboil9/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p'" in 0.6157 seconds and 17.9 Mi memory
2023-07-05 13:43:33.615906: Running the command: "cactus_analyseAssembly HG02723.2.sanitized.fa"
2023-07-05 13:43:33.618593: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/a2bc/468f/tmp2z20w4n_/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p'" in 0.7016 seconds and 22.7 Mi memory
2023-07-05 13:43:33.619495: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/1de5/c888/tmpjfoqxtag/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p'" in 0.658 seconds and 22.8 Mi memory
2023-07-05 13:43:33.620722: Running the command: "cactus_analyseAssembly HG00733.2.sanitized.fa"
2023-07-05 13:43:33.621628: Running the command: "cactus_analyseAssembly HG01928.1.sanitized.fa"
2023-07-05 13:43:33.627283: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/19a6/7184/tmpppuyh5uq/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p'" in 0.6755 seconds and 19.6 Mi memory
2023-07-05 13:43:33.629170: Running the command: "cactus_analyseAssembly HG01123.2.sanitized.fa"
2023-07-05 13:43:33.629084: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/97e2/dbee/tmpyh5zy9g1/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p'" in 0.701 seconds and 17.9 Mi memory
2023-07-05 13:43:33.629203: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/92a6/6da8/tmpzujrrjso/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p'" in 0.673 seconds and 9.1 Mi memory
2023-07-05 13:43:33.631485: Running the command: "cactus_analyseAssembly HG03579.2.sanitized.fa"
2023-07-05 13:43:33.631684: Running the command: "cactus_analyseAssembly HG02109.2.sanitized.fa"
2023-07-05 13:43:33.635762: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/baa3/c1c8/tmpjd_7sawf/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p'" in 0.6426 seconds and 18.1 Mi memory
2023-07-05 13:43:33.636718: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/ba05/87cb/tmp_uofj3h2/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p'" in 0.6752 seconds and 22.5 Mi memory
2023-07-05 13:43:33.638369: Running the command: "cactus_analyseAssembly HG01175.2.sanitized.fa"
2023-07-05 13:43:33.638798: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/81c2/0476/tmp4cetb4b7/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p'" in 0.6186 seconds and 23.3 Mi memory
2023-07-05 13:43:33.639189: Running the command: "cactus_analyseAssembly HG01952.2.sanitized.fa"
2023-07-05 13:43:33.640702: Running the command: "cactus_analyseAssembly HG02148.2.sanitized.fa"
2023-07-05 13:43:33.640612: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/3821/a29f/tmpqv08b8lq/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p'" in 0.578 seconds and 25.9 Mi memory
2023-07-05 13:43:33.643719: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
2023-07-05 13:43:33.646348: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/a540/28ce/tmpqq0dm9vx/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p'" in 0.6576 seconds and 21.2 Mi memory
2023-07-05 13:43:33.647874: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/598a/96be/tmp9q2ck09i/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p'" in 0.6124 seconds and 24.5 Mi memory
2023-07-05 13:43:33.648266: Running the command: "cactus_analyseAssembly HG01109.1.sanitized.fa"
2023-07-05 13:43:33.648711: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/ea01/fd1a/tmphpbx4kgw/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p'" in 0.6818 seconds and 18.1 Mi memory
2023-07-05 13:43:33.649971: Running the command: "cactus_analyseAssembly HG01109.2.sanitized.fa"
2023-07-05 13:43:33.650971: Running the command: "cactus_analyseAssembly NA20129.1.sanitized.fa"
2023-07-05 13:43:33.652530: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/1fde/ff84/tmp5wwdtxqw/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p'" in 0.6508 seconds and 17.8 Mi memory
2023-07-05 13:43:33.652991: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/d10b/0d39/tmp8fbxeu67/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p'" in 0.6146 seconds and 19.4 Mi memory
2023-07-05 13:43:33.654672: Running the command: "cactus_analyseAssembly HG01258.2.sanitized.fa"
2023-07-05 13:43:33.654832: Running the command: "cactus_analyseAssembly HG01243.2.sanitized.fa"
2023-07-05 13:43:33.654847: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/308b/aa94/tmp93ghyr0e/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p'" in 0.5868 seconds and 51.8 Mi memory
2023-07-05 13:43:33.655981: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/3f35/7d42/tmpx15ljce3/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 0.6653 seconds and 19.4 Mi memory
2023-07-05 13:43:33.656989: Running the command: "cactus_analyseAssembly HG02886.2.sanitized.fa"
2023-07-05 13:43:33.657737: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-05 13:43:33.659608: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/4e7c/678c/tmpnku3tux0/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p'" in 0.6568 seconds and 18.1 Mi memory
2023-07-05 13:43:33.660973: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/029b/44a1/tmpc1lh3zhw/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p'" in 0.6583 seconds and 17.9 Mi memory
2023-07-05 13:43:33.661443: Running the command: "cactus_analyseAssembly HG01361.2.sanitized.fa"
2023-07-05 13:43:33.662563: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/e178/5306/tmpynouqbq1/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p'" in 0.6065 seconds and 24.8 Mi memory
2023-07-05 13:43:33.662906: Running the command: "cactus_analyseAssembly HG02818.1.sanitized.fa"
2023-07-05 13:43:33.664301: Running the command: "cactus_analyseAssembly HG01952.1.sanitized.fa"
2023-07-05 13:43:33.664678: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/31b6/d7cd/tmphdha1chw/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p'" in 0.6294 seconds and 9.4 Mi memory
2023-07-05 13:43:33.666586: Running the command: "cactus_analyseAssembly HG02572.1.sanitized.fa"
2023-07-05 13:43:33.664974: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/808e/0d49/tmpzo_hlfzf/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p"
2023-07-05 13:43:33.667776: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/43c9/5d7a/tmpc1gpswxb/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p'" in 0.694 seconds and 22.9 Mi memory
2023-07-05 13:43:33.668402: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/5cf8/53be/tmpc71trv0b/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p'" in 0.6414 seconds and 17.8 Mi memory
2023-07-05 13:43:33.669724: Running the command: "cactus_analyseAssembly HG02486.1.sanitized.fa"
2023-07-05 13:43:33.670368: Running the command: "cactus_analyseAssembly HG02055.2.sanitized.fa"
2023-07-05 13:43:33.671915: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/ad64/667b/tmpgi_ecvoy/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p'" in 0.6193 seconds and 19.6 Mi memory
2023-07-05 13:43:33.673500: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/56a6/a114/tmplek1gvr4/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p'" in 0.5993 seconds and 17.9 Mi memory
2023-07-05 13:43:33.673773: Running the command: "cactus_analyseAssembly HG03453.2.sanitized.fa"
2023-07-05 13:43:33.674356: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/d595/6e15/tmpuli18ztp/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p'" in 0.6936 seconds and 24.8 Mi memory
2023-07-05 13:43:33.675021: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/25a7/232f/tmpofbrlt4z/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p'" in 0.6483 seconds and 22.0 Mi memory
2023-07-05 13:43:33.675452: Running the command: "cactus_analyseAssembly HG01175.1.sanitized.fa"
2023-07-05 13:43:33.673839: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/0372/7b96/tmp_5szq8wk/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p"
2023-07-05 13:43:33.676150: Running the command: "cactus_analyseAssembly HG01891.2.sanitized.fa"
2023-07-05 13:43:33.676831: Running the command: "cactus_analyseAssembly HG01891.1.sanitized.fa"
2023-07-05 13:43:33.678175: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/383b/a994/tmpgg00fw42/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p'" in 0.6093 seconds and 51.9 Mi memory
2023-07-05 13:43:33.680010: Running the command: "cactus_analyseAssembly HG03516.2.sanitized.fa"
2023-07-05 13:43:33.683825: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/fa02/fd7d/tmpxp_hjb9n/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p'" in 0.5913 seconds and 21.8 Mi memory
2023-07-05 13:43:33.684633: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/2115/ebe4/tmpdk8noful/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p'" in 0.6373 seconds and 25.8 Mi memory
2023-07-05 13:43:33.685538: Running the command: "cactus_analyseAssembly HG01071.2.sanitized.fa"
2023-07-05 13:43:33.686508: Running the command: "cactus_analyseAssembly HG01928.2.sanitized.fa"
2023-07-05 13:43:33.690377: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/1de4/05c0/tmpovbb0ji3/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p'" in 0.6037 seconds and 51.9 Mi memory
2023-07-05 13:43:33.690952: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/1825/9e7d/tmpx9_3toco/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p'" in 0.6141 seconds and 17.8 Mi memory
2023-07-05 13:43:33.692366: Running the command: "cactus_analyseAssembly HG02257.1.sanitized.fa"
2023-07-05 13:43:33.692967: Running the command: "cactus_analyseAssembly HG02145.1.sanitized.fa"
2023-07-05 13:43:33.699945: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/f405/bb29/tmpj4ehupru/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p'" in 0.637 seconds and 51.9 Mi memory
2023-07-05 13:43:33.701083: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/8349/d965/tmpuksmojir/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p'" in 0.5742 seconds and 17.9 Mi memory
2023-07-05 13:43:33.703031: Running the command: "cactus_analyseAssembly HG03486.1.sanitized.fa"
2023-07-05 13:43:33.703227: Running the command: "cactus_analyseAssembly HG02630.1.sanitized.fa"
2023-07-05 13:43:33.708696: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/df81/aa31/tmpejxr619y/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p'" in 0.5924 seconds and 51.9 Mi memory
2023-07-05 13:43:33.710033: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/8cc0/998d/tmp_0nskzh6/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p'" in 0.6112 seconds and 19.4 Mi memory
2023-07-05 13:43:33.710414: Running the command: "cactus_analyseAssembly HG02080.1.sanitized.fa"
2023-07-05 13:43:33.711894: Running the command: "cactus_analyseAssembly HG00673.1.sanitized.fa"
2023-07-05 13:43:33.713902: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/2288/1ebb/tmplqxx60a3/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p'" in 1.3421 seconds and 51.9 Mi memory
2023-07-05 13:43:33.720558: Running the command: "cactus_analyseAssembly HG03492.1.sanitized.fa"
2023-07-05 13:43:33.728858: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/6091/3ee7/tmp6576syb5/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p'" in 0.622 seconds and 51.9 Mi memory
2023-07-05 13:43:33.730734: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/eeef/a38c/tmp111f9rjn/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 0.6257 seconds and 51.9 Mi memory
2023-07-05 13:43:33.730832: Running the command: "cactus_analyseAssembly HG00438.1.sanitized.fa"
2023-07-05 13:43:33.728756: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/1095/259c/tmpfugntv19/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p"
2023-07-05 13:43:33.732497: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
2023-07-05 13:43:33.736607: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/0320/9e11/tmpcv2xb_tq/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p'" in 0.6189 seconds and 51.9 Mi memory
2023-07-05 13:43:33.738426: Running the command: "cactus_analyseAssembly HG02622.2.sanitized.fa"
2023-07-05 13:43:33.741464: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/b5cb/fd2d/tmpfp05994n/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p'" in 0.7173 seconds and 17.8 Mi memory
2023-07-05 13:43:33.742954: Running the command: "cactus_analyseAssembly HG00673.2.sanitized.fa"
2023-07-05 13:43:33.741260: Successfully ran: "cactus_analyseAssembly HG00733.1.sanitized.fa" in 0.559 seconds and 22.2 Mi memory
2023-07-05 13:43:33.747042: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/86c3/7a4e/tmp3s14jj4n/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p'" in 0.7471 seconds and 51.9 Mi memory
2023-07-05 13:43:33.747595: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d62/e2af/tmpzf3wfoob/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p'" in 0.7904 seconds and 51.9 Mi memory
2023-07-05 13:43:33.750632: Running the command: "cactus_analyseAssembly HG01123.1.sanitized.fa"
2023-07-05 13:43:33.751222: Running the command: "cactus_analyseAssembly HG01258.2.sanitized.fa"
2023-07-05 13:43:33.752037: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/febe/a63c/tmpyx8_v_sk/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p'" in 0.794 seconds and 51.9 Mi memory
2023-07-05 13:43:33.755660: Running the command: "cactus_analyseAssembly HG03486.1.sanitized.fa"
2023-07-05 13:43:33.757277: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/bf6c/bb7e/tmpcsk0mq0j/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p'" in 1.3699 seconds and 55.3 Mi memory
2023-07-05 13:43:33.757220: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 0.5516 seconds and 51.9 Mi memory
2023-07-05 13:43:33.762098: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 0.5281 seconds and 51.9 Mi memory
2023-07-05 13:43:33.765224: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/4340/4b58/tmpoa1c4301/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p'" in 0.6732 seconds and 18.0 Mi memory
2023-07-05 13:43:33.764986: Successfully ran: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa" in 0.5703 seconds and 6.9 Mi memory
2023-07-05 13:43:33.767095: Running the command: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa"
2023-07-05 13:43:33.768818: Successfully ran: "cactus_analyseAssembly HG02886.1.sanitized.fa" in 0.555 seconds and 51.9 Mi memory
2023-07-05 13:43:33.786683: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/3a76/b075/tmpi0phrxb5/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p"
2023-07-05 13:43:33.788422: Running the command: "cactus_analyseAssembly HG02818.1.sanitized.fa"
2023-07-05 13:43:33.792239: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/1d52/b7ef/tmpx89tyzic/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p"
2023-07-05 13:43:33.796580: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/21bd/b276/tmps95oxsxj/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-05 13:43:33.801670: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/89ed/41da/tmp1ha812m0/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p"
2023-07-05 13:43:33.808784: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/56cd/4639/tmpo5m_8ri0/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p"
2023-07-05 13:43:33.814417: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/1a3d/f079/tmp1r5n80qw/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p'" in 1.2742 seconds and 57.3 Mi memory
2023-07-05 13:43:33.820170: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/24b2/ce25/tmphl9t5ks6/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p"
2023-07-05 13:43:33.820929: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/3a77/6f90/tmpk07g11sh/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p"
2023-07-05 13:43:33.823047: Running the command: "cactus_analyseAssembly HG01928.2.sanitized.fa"
2023-07-05 13:43:33.833283: Successfully ran: "cactus_analyseAssembly HG01106.1.sanitized.fa" in 0.5477 seconds and 24.5 Mi memory
2023-07-05 13:43:33.834437: Successfully ran: "cactus_analyseAssembly HG03098.2.sanitized.fa" in 0.5507 seconds and 25.8 Mi memory
2023-07-05 13:43:33.838315: Successfully ran: "cactus_analyseAssembly HG01243.2.sanitized.fa" in 0.5562 seconds and 24.5 Mi memory
2023-07-05 13:43:33.842551: Successfully ran: "cactus_analyseAssembly HG01243.1.sanitized.fa" in 0.549 seconds and 17.8 Mi memory
2023-07-05 13:43:33.845284: Successfully ran: "cactus_analyseAssembly NA20129.1.sanitized.fa" in 0.5571 seconds and 26.1 Mi memory
2023-07-05 13:43:33.849701: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 0.5338 seconds and 20.1 Mi memory
2023-07-05 13:43:33.856078: Successfully ran: "cactus_analyseAssembly HG03492.2.sanitized.fa" in 0.5595 seconds and 19.1 Mi memory
2023-07-05 13:43:33.859494: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 0.5671 seconds and 51.9 Mi memory
2023-07-05 13:43:33.859792: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 0.5602 seconds and 25.1 Mi memory
2023-07-05 13:43:33.861482: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 0.5576 seconds and 24.5 Mi memory
2023-07-05 13:43:33.868821: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 0.5698 seconds and 51.9 Mi memory
2023-07-05 13:43:33.873083: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 0.5524 seconds and 18.1 Mi memory
2023-07-05 13:43:33.874730: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 0.5724 seconds and 51.9 Mi memory
2023-07-05 13:43:33.879337: Successfully ran: "cactus_analyseAssembly HG01978.1.sanitized.fa" in 0.5727 seconds and 51.9 Mi memory
2023-07-05 13:43:33.885176: Successfully ran: "cactus_analyseAssembly HG02717.1.sanitized.fa" in 0.5672 seconds and 51.9 Mi memory
2023-07-05 13:43:33.886680: Successfully ran: "cactus_analyseAssembly HG00741.2.sanitized.fa" in 0.5732 seconds and 51.9 Mi memory
2023-07-05 13:43:33.891737: Successfully ran: "cactus_analyseAssembly HG03579.2.sanitized.fa" in 0.5705 seconds and 51.9 Mi memory
2023-07-05 13:43:33.891737: Successfully ran: "cactus_analyseAssembly HG01358.2.sanitized.fa" in 0.5708 seconds and 51.9 Mi memory
2023-07-05 13:43:33.894471: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/d60b/6bea/tmp66v0ibyo/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p'" in 1.3015 seconds and 51.9 Mi memory
2023-07-05 13:43:33.894489: Successfully ran: "cactus_analyseAssembly HG01978.2.sanitized.fa" in 0.5783 seconds and 54.9 Mi memory
2023-07-05 13:43:33.900390: Successfully ran: "cactus_analyseAssembly HG01361.1.sanitized.fa" in 0.5696 seconds and 51.9 Mi memory
2023-07-05 13:43:33.901187: Successfully ran: "cactus_analyseAssembly NA21309.1.sanitized.fa" in 0.5643 seconds and 51.9 Mi memory
2023-07-05 13:43:33.902115: Running the command: "cactus_analyseAssembly HG02145.1.sanitized.fa"
2023-07-05 13:43:33.904127: Successfully ran: "cactus_analyseAssembly HG00438.1.sanitized.fa" in 0.5578 seconds and 24.8 Mi memory
2023-07-05 13:43:33.904922: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 0.5645 seconds and 54.7 Mi memory
2023-07-05 13:43:33.913620: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 0.582 seconds and 51.9 Mi memory
2023-07-05 13:43:33.913901: Successfully ran: "cactus_analyseAssembly HG02630.1.sanitized.fa" in 0.5837 seconds and 51.9 Mi memory
2023-07-05 13:43:33.920102: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 0.587 seconds and 56.8 Mi memory
2023-07-05 13:43:33.920635: Successfully ran: "cactus_analyseAssembly HG02622.1.sanitized.fa" in 0.5955 seconds and 56.2 Mi memory
2023-07-05 13:43:33.959248: Successfully ran: "cactus_analyseAssembly HG01891.2.sanitized.fa" in 0.65 seconds and 51.9 Mi memory
2023-07-05 13:43:33.995977: Successfully ran: "cactus_analyseAssembly CHM13.sanitized.fa" in 0.6344 seconds and 153.9 Mi memory
2023-07-05 13:43:34.030491: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/b385/718d/tmp25wi49oy/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p'" in 1.3509 seconds and 52.2 Mi memory
2023-07-05 13:43:34.036254: Running the command: "cactus_analyseAssembly HG02109.1.sanitized.fa"
Got message from job at time 07-05-2023 13:43:34: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 4 Total-length: 88962384 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 81557189 Median-sequence-length: 5295934 Max-sequence-length: 81557189 Min-sequence-length: 121962

2023-07-05 13:43:34.102712: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/55b1/0205/tmpzp9o3inu/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p"
2023-07-05 13:43:34.108609: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 0.4761 seconds and 9.0 Mi memory
Got message from job at time 07-05-2023 13:43:34: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 10 Total-length: 89927234 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28930821 Median-sequence-length: 310740 Max-sequence-length: 35569709 Min-sequence-length: 22449

2023-07-05 13:43:34.110530: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 0.4937 seconds and 17.8 Mi memory
2023-07-05 13:43:34.110623: Successfully ran: "cactus_analyseAssembly NA20129.1.sanitized.fa" in 0.4587 seconds and 17.8 Mi memory
2023-07-05 13:43:34.113690: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 0.3699 seconds and 17.8 Mi memory
2023-07-05 13:43:34.114379: Successfully ran: "cactus_analyseAssembly HG01928.1.sanitized.fa" in 0.4917 seconds and 22.7 Mi memory
2023-07-05 13:43:34.114551: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 0.4928 seconds and 22.7 Mi memory
2023-07-05 13:43:34.114924: Successfully ran: "cactus_analyseAssembly HG01175.2.sanitized.fa" in 0.4753 seconds and 17.8 Mi memory
2023-07-05 13:43:34.115020: Successfully ran: "cactus_analyseAssembly HG00733.1.sanitized.fa" in 0.5157 seconds and 23.7 Mi memory
2023-07-05 13:43:34.115068: Successfully ran: "cactus_analyseAssembly HG01123.2.sanitized.fa" in 0.485 seconds and 19.6 Mi memory
2023-07-05 13:43:34.115501: Successfully ran: "cactus_analyseAssembly HG01952.2.sanitized.fa" in 0.4754 seconds and 22.4 Mi memory
2023-07-05 13:43:34.115707: Successfully ran: "cactus_analyseAssembly HG02723.1.sanitized.fa" in 0.4571 seconds and 19.3 Mi memory
2023-07-05 13:43:34.118584: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 0.4771 seconds and 23.2 Mi memory
2023-07-05 13:43:34.118621: Successfully ran: "cactus_analyseAssembly HG03579.2.sanitized.fa" in 0.4861 seconds and 17.8 Mi memory
2023-07-05 13:43:34.120014: Successfully ran: "cactus_analyseAssembly HG02257.2.sanitized.fa" in 0.5078 seconds and 24.7 Mi memory
2023-07-05 13:43:34.120013: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/d887/3680/tmp83ehghaz/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p"
2023-07-05 13:43:34.121549: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 0.4542 seconds and 9.3 Mi memory
2023-07-05 13:43:34.121656: Successfully ran: "cactus_analyseAssembly HG02055.2.sanitized.fa" in 0.4503 seconds and 17.8 Mi memory
2023-07-05 13:43:34.121911: Successfully ran: "cactus_analyseAssembly HG01952.1.sanitized.fa" in 0.4568 seconds and 24.8 Mi memory
2023-07-05 13:43:34.122826: Successfully ran: "cactus_analyseAssembly HG02818.1.sanitized.fa" in 0.4589 seconds and 17.8 Mi memory
2023-07-05 13:43:34.122806: Successfully ran: "cactus_analyseAssembly HG01243.2.sanitized.fa" in 0.467 seconds and 19.3 Mi memory
2023-07-05 13:43:34.123700: Successfully ran: "cactus_analyseAssembly HG01891.1.sanitized.fa" in 0.4461 seconds and 21.9 Mi memory
2023-07-05 13:43:34.126645: Successfully ran: "cactus_analyseAssembly HG01891.2.sanitized.fa" in 0.4497 seconds and 24.8 Mi memory
2023-07-05 13:43:34.127084: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 0.4525 seconds and 19.6 Mi memory
2023-07-05 13:43:34.127364: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 0.4651 seconds and 18.1 Mi memory
2023-07-05 13:43:34.127489: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 0.4512 seconds and 17.8 Mi memory
Got message from job at time 07-05-2023 13:43:34: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 5 Total-length: 90475961 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 90007274 Median-sequence-length: 95628 Max-sequence-length: 90007274 Min-sequence-length: 30409

2023-07-05 13:43:34.130344: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 0.4749 seconds and 17.8 Mi memory
2023-07-05 13:43:34.130555: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 0.4796 seconds and 24.5 Mi memory
2023-07-05 13:43:34.131585: Successfully ran: "cactus_analyseAssembly HG03098.2.sanitized.fa" in 0.4868 seconds and 25.8 Mi memory
2023-07-05 13:43:34.132543: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 0.4835 seconds and 21.1 Mi memory
2023-07-05 13:43:34.134428: Successfully ran: "cactus_analyseAssembly HG01928.2.sanitized.fa" in 0.4472 seconds and 25.8 Mi memory
2023-07-05 13:43:34.134284: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/8c6c/f1bf/tmp4vidq8x4/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p"
2023-07-05 13:43:34.134971: Successfully ran: "cactus_analyseAssembly HG02486.1.sanitized.fa" in 0.4643 seconds and 23.0 Mi memory
2023-07-05 13:43:34.135533: Successfully ran: "cactus_analyseAssembly HG01106.1.sanitized.fa" in 0.5264 seconds and 51.8 Mi memory
2023-07-05 13:43:34.137397: Successfully ran: "cactus_analyseAssembly HG01071.2.sanitized.fa" in 0.451 seconds and 21.6 Mi memory
2023-07-05 13:43:34.142998: Successfully ran: "cactus_analyseAssembly HG02886.2.sanitized.fa" in 0.4851 seconds and 51.8 Mi memory
2023-07-05 13:43:34.144735: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/767e/85d1/tmp6kysanel/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p'" in 1.2989 seconds and 154.0 Mi memory
2023-07-05 13:43:34.149052: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 0.4681 seconds and 51.9 Mi memory
2023-07-05 13:43:34.149547: Successfully ran: "cactus_analyseAssembly HG02145.1.sanitized.fa" in 0.4558 seconds and 17.8 Mi memory
2023-07-05 13:43:34.150873: Running the command: "cactus_analyseAssembly HG02486.1.sanitized.fa"
2023-07-05 13:43:34.152895: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/c79b/19f7/tmpk8cp9x19/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p'" in 1.3113 seconds and 52.9 Mi memory
2023-07-05 13:43:34.154647: Successfully ran: "cactus_analyseAssembly HG03486.1.sanitized.fa" in 0.4507 seconds and 51.8 Mi memory
2023-07-05 13:43:34.159152: Running the command: "cactus_analyseAssembly HG01243.1.sanitized.fa"
2023-07-05 13:43:34.162072: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 0.4492 seconds and 19.4 Mi memory
2023-07-05 13:43:34.165425: Successfully ran: "cactus_analyseAssembly HG02630.1.sanitized.fa" in 0.4614 seconds and 17.8 Mi memory
2023-07-05 13:43:34.168055: Successfully ran: "cactus_analyseAssembly HG02257.1.sanitized.fa" in 0.4748 seconds and 51.8 Mi memory
2023-07-05 13:43:34.210740: Successfully ran: "cactus_analyseAssembly HG03540.1.sanitized.fa" in 0.8576 seconds and 51.9 Mi memory
2023-07-05 13:43:34.276163: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/baa6/7326/tmp4kliuq4s/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p'" in 0.7235 seconds and 51.9 Mi memory
2023-07-05 13:43:34.279946: Running the command: "cactus_analyseAssembly HG02055.2.sanitized.fa"
2023-07-05 13:43:34.280844: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/5f86/d518/tmpjbgs6azm/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p'" in 0.718 seconds and 25.1 Mi memory
2023-07-05 13:43:34.284352: Running the command: "cactus_analyseAssembly NA18906.1.sanitized.fa"
2023-07-05 13:43:34.292266: Successfully ran: "cactus_analyseAssembly HG01123.1.sanitized.fa" in 0.5409 seconds and 51.9 Mi memory
2023-07-05 13:43:34.294305: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 0.5423 seconds and 51.9 Mi memory
2023-07-05 13:43:34.299840: Successfully ran: "cactus_analyseAssembly HG03486.1.sanitized.fa" in 0.5434 seconds and 51.9 Mi memory
2023-07-05 13:43:34.304000: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/684c/2914/tmp5apf4q_g/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p'" in 1.2381 seconds and 22.8 Mi memory
2023-07-05 13:43:34.310112: Running the command: "cactus_analyseAssembly HG02145.2.sanitized.fa"
2023-07-05 13:43:34.323668: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/c043/5a5a/tmp5_83i8oe/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p'" in 0.7422 seconds and 51.9 Mi memory
2023-07-05 13:43:34.329569: Running the command: "cactus_analyseAssembly HG02145.1.sanitized.fa"
2023-07-05 13:43:34.382628: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/808e/0d49/tmpzo_hlfzf/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p'" in 0.7165 seconds and 51.9 Mi memory
2023-07-05 13:43:34.385751: Running the command: "cactus_analyseAssembly HG02486.2.sanitized.fa"
2023-07-05 13:43:34.410499: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/0372/7b96/tmp_5szq8wk/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p'" in 0.7356 seconds and 24.6 Mi memory
2023-07-05 13:43:34.413773: Running the command: "cactus_analyseAssembly HG03486.2.sanitized.fa"
2023-07-05 13:43:34.502719: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/1095/259c/tmpfugntv19/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p'" in 0.7729 seconds and 51.9 Mi memory
2023-07-05 13:43:34.506146: Running the command: "cactus_analyseAssembly HG02109.1.sanitized.fa"
2023-07-05 13:43:34.515714: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/3a76/b075/tmpi0phrxb5/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 0.7276 seconds and 51.9 Mi memory
2023-07-05 13:43:34.519282: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-05 13:43:34.523492: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/1d52/b7ef/tmpx89tyzic/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p'" in 0.7298 seconds and 19.4 Mi memory
2023-07-05 13:43:34.522788: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 0.9208 seconds and 61.4 Mi memory
2023-07-05 13:43:34.527718: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/2c9a/8d7d/tmpizkzx9ku/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p"
2023-07-05 13:43:34.529157: Running the command: "cactus_analyseAssembly HG02723.2.sanitized.fa"
2023-07-05 13:43:34.551118: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/56cd/4639/tmpo5m_8ri0/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p'" in 0.7412 seconds and 54.8 Mi memory
2023-07-05 13:43:34.554660: Running the command: "cactus_analyseAssembly HG00741.1.sanitized.fa"
2023-07-05 13:43:34.556931: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/21bd/b276/tmps95oxsxj/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p'" in 0.7591 seconds and 51.9 Mi memory
2023-07-05 13:43:34.558516: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/24b2/ce25/tmphl9t5ks6/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p'" in 0.7372 seconds and 25.6 Mi memory
2023-07-05 13:43:34.560511: Running the command: "cactus_analyseAssembly HG01258.1.sanitized.fa"
2023-07-05 13:43:34.562227: Running the command: "cactus_analyseAssembly HG03540.2.sanitized.fa"
2023-07-05 13:43:34.579169: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/3a77/6f90/tmpk07g11sh/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p'" in 0.7569 seconds and 51.9 Mi memory
2023-07-05 13:43:34.582734: Running the command: "cactus_analyseAssembly HG03453.1.sanitized.fa"
2023-07-05 13:43:34.653217: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 1.19 seconds and 52.4 Mi memory
2023-07-05 13:43:34.670208: Successfully ran: "cactus_analyseAssembly HG02080.2.sanitized.fa" in 1.1802 seconds and 51.9 Mi memory
2023-07-05 13:43:34.673527: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 1.1857 seconds and 51.9 Mi memory
2023-07-05 13:43:34.684207: Successfully ran: "cactus_analyseAssembly HG01071.2.sanitized.fa" in 1.1834 seconds and 51.9 Mi memory
2023-07-05 13:43:34.693104: Successfully ran: "cactus_analyseAssembly HG02080.1.sanitized.fa" in 1.1712 seconds and 52.9 Mi memory
2023-07-05 13:43:34.698608: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 1.1822 seconds and 51.9 Mi memory
2023-07-05 13:43:34.699331: Successfully ran: "cactus_analyseAssembly HG03540.2.sanitized.fa" in 1.1762 seconds and 56.5 Mi memory
2023-07-05 13:43:34.700964: Successfully ran: "cactus_analyseAssembly HG01891.1.sanitized.fa" in 1.1971 seconds and 58.3 Mi memory
2023-07-05 13:43:34.713540: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 1.1813 seconds and 52.9 Mi memory
2023-07-05 13:43:34.730272: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 1.1734 seconds and 51.9 Mi memory
2023-07-05 13:43:34.768634: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 1.2431 seconds and 153.9 Mi memory
2023-07-05 13:43:34.816959: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/89ed/41da/tmp1ha812m0/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p'" in 1.014 seconds and 51.9 Mi memory
2023-07-05 13:43:34.820173: Running the command: "cactus_analyseAssembly HG02055.1.sanitized.fa"
2023-07-05 13:43:34.837491: Successfully ran: "cactus_analyseAssembly NA18906.1.sanitized.fa" in 1.2545 seconds and 153.9 Mi memory
2023-07-05 13:43:34.844708: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/55b1/0205/tmpzp9o3inu/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p'" in 0.7406 seconds and 51.9 Mi memory
2023-07-05 13:43:34.845810: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/d887/3680/tmp83ehghaz/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p'" in 0.7244 seconds and 25.6 Mi memory
2023-07-05 13:43:34.848349: Running the command: "cactus_analyseAssembly HG01928.2.sanitized.fa"
2023-07-05 13:43:34.849462: Running the command: "cactus_analyseAssembly HG02886.2.sanitized.fa"
2023-07-05 13:43:34.849227: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 1.1278 seconds and 51.9 Mi memory
2023-07-05 13:43:34.885614: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/8c6c/f1bf/tmp4vidq8x4/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p'" in 0.75 seconds and 51.9 Mi memory
2023-07-05 13:43:34.889353: Running the command: "cactus_analyseAssembly HG02080.1.sanitized.fa"
Got message from job at time 07-05-2023 13:43:34: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 2 Total-length: 90182954 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 88859917 Median-sequence-length: 88859917 Max-sequence-length: 88859917 Min-sequence-length: 1323037

2023-07-05 13:43:34.922949: Successfully ran: "cactus_analyseAssembly HG02818.1.sanitized.fa" in 1.1336 seconds and 55.2 Mi memory
2023-07-05 13:43:34.929833: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/1292/fa34/tmpb2rhjd5e/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p'" in 0.759 seconds and 51.9 Mi memory
2023-07-05 13:43:34.933653: Running the command: "cactus_analyseAssembly HG01952.2.sanitized.fa"
2023-07-05 13:43:34.936709: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/1820/6137/tmpv5edc7gs/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
2023-07-05 13:43:34.990051: Successfully ran: "cactus_analyseAssembly HG01928.2.sanitized.fa" in 1.1661 seconds and 57.3 Mi memory
Got message from job at time 07-05-2023 13:43:35: Assembly stats for HG00741.1: Input-sample: HG00741.1.sanitized.fa Total-sequences: 5 Total-length: 98389648 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 93287776 Median-sequence-length: 63764 Max-sequence-length: 93287776 Min-sequence-length: 36895

2023-07-05 13:43:35.034279: Successfully ran: "cactus_analyseAssembly NA18906.1.sanitized.fa" in 0.7491 seconds and 25.0 Mi memory
2023-07-05 13:43:35.037559: Successfully ran: "cactus_analyseAssembly HG02055.2.sanitized.fa" in 0.7568 seconds and 51.9 Mi memory
2023-07-05 13:43:35.055815: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/882d/c2df/tmpeiqa88v9/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p"
2023-07-05 13:43:35.062840: Successfully ran: "cactus_analyseAssembly HG02145.1.sanitized.fa" in 1.1599 seconds and 51.9 Mi memory
2023-07-05 13:43:35.074649: Successfully ran: "cactus_analyseAssembly HG02145.1.sanitized.fa" in 0.7441 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:43:35: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 4 Total-length: 90232145 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 69385587 Median-sequence-length: 20769553 Max-sequence-length: 69385587 Min-sequence-length: 36712

2023-07-05 13:43:35.106410: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/420a/9e5c/tmp398nc3a3/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p"
2023-07-05 13:43:35.129091: Successfully ran: "cactus_analyseAssembly HG02486.2.sanitized.fa" in 0.7425 seconds and 51.9 Mi memory
2023-07-05 13:43:35.159349: Successfully ran: "cactus_analyseAssembly HG03486.2.sanitized.fa" in 0.7448 seconds and 24.5 Mi memory
2023-07-05 13:43:35.187175: Successfully ran: "cactus_analyseAssembly HG02109.1.sanitized.fa" in 1.15 seconds and 52.1 Mi memory
2023-07-05 13:43:35.232531: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 0.9216 seconds and 22.7 Mi memory
2023-07-05 13:43:35.246004: Successfully ran: "cactus_analyseAssembly HG02109.1.sanitized.fa" in 0.7391 seconds and 51.9 Mi memory
2023-07-05 13:43:35.285361: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/99d1/5665/tmpv68pb4i8/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p"
2023-07-05 13:43:35.326211: Successfully ran: "cactus_analyseAssembly HG01243.1.sanitized.fa" in 1.1662 seconds and 52.9 Mi memory
2023-07-05 13:43:35.364682: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/2c9a/8d7d/tmpizkzx9ku/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p'" in 0.8355 seconds and 24.8 Mi memory
2023-07-05 13:43:35.369464: Running the command: "cactus_analyseAssembly HG01243.2.sanitized.fa"
2023-07-05 13:43:35.378111: Successfully ran: "cactus_analyseAssembly HG02486.1.sanitized.fa" in 1.2264 seconds and 153.9 Mi memory
2023-07-05 13:43:35.385366: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8a32/fc28/tmpregnwr7f/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p"
2023-07-05 13:43:35.398613: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/26ba/283d/tmp_ouktjau/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p"
Got message from job at time 07-05-2023 13:43:35: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 2 Total-length: 94188152 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54209139 Median-sequence-length: 54209139 Max-sequence-length: 54209139 Min-sequence-length: 39979013

Got message from job at time 07-05-2023 13:43:35: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 2 Total-length: 88071515 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 85001319 Median-sequence-length: 85001319 Max-sequence-length: 85001319 Min-sequence-length: 3070196

Got message from job at time 07-05-2023 13:43:35: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 8 Total-length: 89788061 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22029784 Median-sequence-length: 11719677 Max-sequence-length: 33855561 Min-sequence-length: 948942

Got message from job at time 07-05-2023 13:43:35: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 107043718 Proportion-repeat-masked: 0.173066 ProportionNs: 0.173066 Total-Ns: 18525617 N50: 107043718 Median-sequence-length: 107043718 Max-sequence-length: 107043718 Min-sequence-length: 107043718

Got message from job at time 07-05-2023 13:43:35: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 6 Total-length: 90997547 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 90099047 Median-sequence-length: 125088 Max-sequence-length: 90099047 Min-sequence-length: 26246

2023-07-05 13:43:35.576585: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a6b0/6356/tmp3406rinq/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p"
Got message from job at time 07-05-2023 13:43:35: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 8 Total-length: 90162396 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 68606510 Median-sequence-length: 634375 Max-sequence-length: 68606510 Min-sequence-length: 42270

2023-07-05 13:43:35.586975: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a23f/503f/tmpex2n867d/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p"
Got message from job at time 07-05-2023 13:43:35: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 4 Total-length: 86608703 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 46220048 Median-sequence-length: 32298653 Max-sequence-length: 46220048 Min-sequence-length: 37185

2023-07-05 13:43:35.605212: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7013/0185/tmpm32usu9f/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
Got message from job at time 07-05-2023 13:43:35: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 7 Total-length: 86342574 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 84614732 Median-sequence-length: 235701 Max-sequence-length: 84614732 Min-sequence-length: 71425

Got message from job at time 07-05-2023 13:43:35: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 2 Total-length: 88149901 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 87237932 Median-sequence-length: 87237932 Max-sequence-length: 87237932 Min-sequence-length: 911969

Got message from job at time 07-05-2023 13:43:35: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 4 Total-length: 98012090 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 96651566 Median-sequence-length: 642677 Max-sequence-length: 96651566 Min-sequence-length: 108040

Got message from job at time 07-05-2023 13:43:35: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 2 Total-length: 88658464 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 88258763 Median-sequence-length: 88258763 Max-sequence-length: 88258763 Min-sequence-length: 399701

Got message from job at time 07-05-2023 13:43:35: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 4 Total-length: 88650509 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 88496630 Median-sequence-length: 86925 Max-sequence-length: 88496630 Min-sequence-length: 27770

Got message from job at time 07-05-2023 13:43:35: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 7 Total-length: 96508121 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28896267 Median-sequence-length: 11682946 Max-sequence-length: 42111193 Min-sequence-length: 117883

Got message from job at time 07-05-2023 13:43:35: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 2 Total-length: 96352628 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 96320881 Median-sequence-length: 96320881 Max-sequence-length: 96320881 Min-sequence-length: 31747

Got message from job at time 07-05-2023 13:43:35: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 4 Total-length: 100801031 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 53360584 Median-sequence-length: 28443310 Max-sequence-length: 53360584 Min-sequence-length: 1058678

2023-07-05 13:43:35.759935: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d653/7a2d/tmpgx434me5/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p"
2023-07-05 13:43:35.777695: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/cb5b/0608/tmpc5xhrl4w/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p"
2023-07-05 13:43:35.847011: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/1820/6137/tmpv5edc7gs/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p'" in 0.9089 seconds and 51.9 Mi memory
2023-07-05 13:43:35.849739: Running the command: "cactus_analyseAssembly HG00438.2.sanitized.fa"
2023-07-05 13:43:35.850679: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 1.3202 seconds and 19.3 Mi memory
2023-07-05 13:43:35.865910: Successfully ran: "cactus_analyseAssembly HG03540.2.sanitized.fa" in 1.3028 seconds and 25.6 Mi memory
2023-07-05 13:43:35.866197: Successfully ran: "cactus_analyseAssembly HG01258.1.sanitized.fa" in 1.3048 seconds and 51.8 Mi memory
2023-07-05 13:43:35.880520: Successfully ran: "cactus_analyseAssembly HG00741.1.sanitized.fa" in 1.325 seconds and 54.6 Mi memory
2023-07-05 13:43:35.881454: Successfully ran: "cactus_analyseAssembly HG03453.1.sanitized.fa" in 1.2979 seconds and 51.9 Mi memory
2023-07-05 13:43:35.883666: Successfully ran: "cactus_analyseAssembly HG02723.1.sanitized.fa" in 1.3635 seconds and 51.8 Mi memory
2023-07-05 13:43:35.916632: Successfully ran: "cactus_analyseAssembly HG02886.2.sanitized.fa" in 1.0663 seconds and 25.6 Mi memory
2023-07-05 13:43:35.923277: Successfully ran: "cactus_analyseAssembly HG02055.1.sanitized.fa" in 1.1021 seconds and 51.9 Mi memory
2023-07-05 13:43:35.924147: Successfully ran: "cactus_analyseAssembly HG01928.2.sanitized.fa" in 1.0749 seconds and 51.9 Mi memory
2023-07-05 13:43:35.930156: Successfully ran: "cactus_analyseAssembly HG02080.1.sanitized.fa" in 1.04 seconds and 51.9 Mi memory
2023-07-05 13:43:35.941874: Successfully ran: "cactus_analyseAssembly HG01952.2.sanitized.fa" in 1.0074 seconds and 51.9 Mi memory
2023-07-05 13:43:35.954192: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/420a/9e5c/tmp398nc3a3/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p'" in 0.8462 seconds and 153.9 Mi memory
2023-07-05 13:43:35.958274: Running the command: "cactus_analyseAssembly HG03579.1.sanitized.fa"
2023-07-05 13:43:35.995452: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/882d/c2df/tmpeiqa88v9/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p'" in 0.9381 seconds and 51.9 Mi memory
2023-07-05 13:43:35.999411: Running the command: "cactus_analyseAssembly HG01109.2.sanitized.fa"
2023-07-05 13:43:36.014849: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/8397/8c3b/tmpjzvy0q89/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p"
2023-07-05 13:43:36.146146: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/99d1/5665/tmpv68pb4i8/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p'" in 0.8597 seconds and 154.0 Mi memory
2023-07-05 13:43:36.150752: Running the command: "cactus_analyseAssembly HG02257.2.sanitized.fa"
2023-07-05 13:43:36.208426: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/26ba/283d/tmp_ouktjau/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p'" in 0.8088 seconds and 51.9 Mi memory
2023-07-05 13:43:36.212852: Running the command: "cactus_analyseAssembly HG03486.2.sanitized.fa"
Got message from job at time 07-05-2023 13:43:36: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 5 Total-length: 86521615 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 46119361 Median-sequence-length: 14117045 Max-sequence-length: 46119361 Min-sequence-length: 897907

Got message from job at time 07-05-2023 13:43:36: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 9 Total-length: 98057963 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32935159 Median-sequence-length: 832245 Max-sequence-length: 40677640 Min-sequence-length: 23270

2023-07-05 13:43:36.280875: Successfully ran: "cactus_analyseAssembly HG01243.2.sanitized.fa" in 0.9104 seconds and 24.8 Mi memory
2023-07-05 13:43:36.319258: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8a32/fc28/tmpregnwr7f/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p'" in 0.9326 seconds and 153.9 Mi memory
2023-07-05 13:43:36.324616: Running the command: "cactus_analyseAssembly HG02622.1.sanitized.fa"
2023-07-05 13:43:36.426014: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7013/0185/tmpm32usu9f/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p'" in 0.8198 seconds and 51.9 Mi memory
2023-07-05 13:43:36.430713: Running the command: "cactus_analyseAssembly HG00621.2.sanitized.fa"
2023-07-05 13:43:36.464496: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a6b0/6356/tmp3406rinq/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p'" in 0.8869 seconds and 154.0 Mi memory
2023-07-05 13:43:36.469028: Running the command: "cactus_analyseAssembly HG01928.2.sanitized.fa"
2023-07-05 13:43:36.498340: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a23f/503f/tmpex2n867d/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p'" in 0.9101 seconds and 154.0 Mi memory
2023-07-05 13:43:36.503071: Running the command: "cactus_analyseAssembly HG01928.1.sanitized.fa"
2023-07-05 13:43:36.572377: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 0.5721 seconds and 51.9 Mi memory
2023-07-05 13:43:36.602707: Successfully ran: "cactus_analyseAssembly HG03579.1.sanitized.fa" in 0.6435 seconds and 153.9 Mi memory
2023-07-05 13:43:36.615171: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/cb5b/0608/tmpc5xhrl4w/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p'" in 0.8366 seconds and 154.0 Mi memory
2023-07-05 13:43:36.619936: Running the command: "cactus_analyseAssembly HG02148.2.sanitized.fa"
2023-07-05 13:43:36.632651: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d653/7a2d/tmpgx434me5/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p'" in 0.8718 seconds and 154.0 Mi memory
2023-07-05 13:43:36.637116: Running the command: "cactus_analyseAssembly HG02559.1.sanitized.fa"
2023-07-05 13:43:36.644561: Successfully ran: "cactus_analyseAssembly HG00438.2.sanitized.fa" in 0.7939 seconds and 51.9 Mi memory
2023-07-05 13:43:36.719990: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/8945/37da/tmpl0_nv0ro/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p"
2023-07-05 13:43:36.808388: Successfully ran: "cactus_analyseAssembly HG03486.2.sanitized.fa" in 0.5947 seconds and 51.9 Mi memory
2023-07-05 13:43:36.808760: Successfully ran: "cactus_analyseAssembly HG02257.2.sanitized.fa" in 0.6571 seconds and 153.9 Mi memory
2023-07-05 13:43:37.023741: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 0.5921 seconds and 51.9 Mi memory
2023-07-05 13:43:37.045289: Successfully ran: "cactus_analyseAssembly HG02622.1.sanitized.fa" in 0.7198 seconds and 153.9 Mi memory
2023-07-05 13:43:37.068109: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/8397/8c3b/tmpjzvy0q89/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p'" in 1.052 seconds and 17.9 Mi memory
2023-07-05 13:43:37.071802: Running the command: "cactus_analyseAssembly HG02572.1.sanitized.fa"
2023-07-05 13:43:37.146875: Successfully ran: "cactus_analyseAssembly HG01928.2.sanitized.fa" in 0.677 seconds and 153.9 Mi memory
2023-07-05 13:43:37.206583: Successfully ran: "cactus_analyseAssembly HG01928.1.sanitized.fa" in 0.7027 seconds and 153.9 Mi memory
2023-07-05 13:43:37.269309: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 0.6485 seconds and 153.9 Mi memory
2023-07-05 13:43:37.320446: Successfully ran: "cactus_analyseAssembly HG02559.1.sanitized.fa" in 0.6825 seconds and 153.9 Mi memory
2023-07-05 13:43:37.852638: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 0.7799 seconds and 17.8 Mi memory
Got message from job at time 07-05-2023 13:43:38: Assembly stats for HG03540.1: Input-sample: HG03540.1.sanitized.fa Total-sequences: 7 Total-length: 132777394 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25471525 Median-sequence-length: 15835820 Max-sequence-length: 57850505 Min-sequence-length: 312815

2023-07-05 13:43:38.455359: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/8945/37da/tmpl0_nv0ro/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p'" in 1.7341 seconds and 154.0 Mi memory
2023-07-05 13:43:38.461054: Running the command: "cactus_analyseAssembly HG01358.2.sanitized.fa"
2023-07-05 13:43:38.628622: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8532/89b6/tmpqwmf13kx/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p"
2023-07-05 13:43:38.966363: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f07b/2808/tmp33g856zf/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p"
2023-07-05 13:43:39.079310: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/42ed/eef9/tmp8z5dmsye/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p"
2023-07-05 13:43:39.100364: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4cd1/25db/tmptaa93nbt/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p"
2023-07-05 13:43:39.136670: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de4b/fa61/tmpxk6o1kc3/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p"
2023-07-05 13:43:39.158940: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a364/26b2/tmprqbiwayp/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p"
Got message from job at time 07-05-2023 13:43:39: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 6 Total-length: 133602804 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 116082811 Median-sequence-length: 3136293 Max-sequence-length: 116082811 Min-sequence-length: 322185

Got message from job at time 07-05-2023 13:43:39: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 9 Total-length: 133819520 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 83375334 Median-sequence-length: 3393276 Max-sequence-length: 83375334 Min-sequence-length: 319350

Got message from job at time 07-05-2023 13:43:39: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 6 Total-length: 133572832 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 83368568 Median-sequence-length: 5201533 Max-sequence-length: 83368568 Min-sequence-length: 1253771

Got message from job at time 07-05-2023 13:43:39: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 9 Total-length: 132859429 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27404241 Median-sequence-length: 6937100 Max-sequence-length: 35973034 Min-sequence-length: 1269700

Got message from job at time 07-05-2023 13:43:39: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 5 Total-length: 133620168 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 83247369 Median-sequence-length: 14015960 Max-sequence-length: 83247369 Min-sequence-length: 225250

Got message from job at time 07-05-2023 13:43:39: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 10 Total-length: 133783064 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35119391 Median-sequence-length: 4729357 Max-sequence-length: 63391115 Min-sequence-length: 514126

Got message from job at time 07-05-2023 13:43:39: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 14 Total-length: 133448746 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17359391 Median-sequence-length: 10051897 Max-sequence-length: 22813448 Min-sequence-length: 151188

Got message from job at time 07-05-2023 13:43:39: Assembly stats for HG00735.1: Input-sample: HG00735.1.sanitized.fa Total-sequences: 5 Total-length: 133382372 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 123514194 Median-sequence-length: 4145878 Max-sequence-length: 123514194 Min-sequence-length: 312077

Got message from job at time 07-05-2023 13:43:39: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 6 Total-length: 133584239 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 83380543 Median-sequence-length: 6179028 Max-sequence-length: 83380543 Min-sequence-length: 319485

Got message from job at time 07-05-2023 13:43:39: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 2 Total-length: 132610055 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 97611620 Median-sequence-length: 97611620 Max-sequence-length: 97611620 Min-sequence-length: 34998435

Got message from job at time 07-05-2023 13:43:39: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 5 Total-length: 133554707 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 123684855 Median-sequence-length: 3392095 Max-sequence-length: 123684855 Min-sequence-length: 311828

Got message from job at time 07-05-2023 13:43:39: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 9 Total-length: 132919042 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33364314 Median-sequence-length: 13844408 Max-sequence-length: 35660344 Min-sequence-length: 520466

2023-07-05 13:43:39.451812: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8532/89b6/tmpqwmf13kx/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p'" in 0.8219 seconds and 51.9 Mi memory
2023-07-05 13:43:39.456533: Running the command: "cactus_analyseAssembly HG03492.1.sanitized.fa"
2023-07-05 13:43:39.515315: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/86fd/70cf/tmptwbgq3hs/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p"
2023-07-05 13:43:39.573781: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/42d3/4e0a/tmpkwwi59vb/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p"
2023-07-05 13:43:39.641529: Successfully ran: "cactus_analyseAssembly HG01358.2.sanitized.fa" in 1.1797 seconds and 153.9 Mi memory
2023-07-05 13:43:39.653232: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/77a8/d128/tmpcye3lpj6/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p"
2023-07-05 13:43:39.666150: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/361a/6add/tmple9y00ho/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-05 13:43:39.756998: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f07b/2808/tmp33g856zf/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p'" in 0.7893 seconds and 52.2 Mi memory
2023-07-05 13:43:39.761338: Running the command: "cactus_analyseAssembly HG00673.1.sanitized.fa"
2023-07-05 13:43:39.823694: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b10/9c0e/tmpoon2hs_x/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
2023-07-05 13:43:39.947839: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5bc2/1e24/tmp3uszan1k/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p"
2023-07-05 13:43:39.953491: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/42ed/eef9/tmp8z5dmsye/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p'" in 0.8727 seconds and 51.9 Mi memory
2023-07-05 13:43:39.958164: Running the command: "cactus_analyseAssembly HG03453.1.sanitized.fa"
2023-07-05 13:43:39.979260: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a364/26b2/tmprqbiwayp/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p'" in 0.8193 seconds and 154.0 Mi memory
2023-07-05 13:43:39.983708: Running the command: "cactus_analyseAssembly HG02559.2.sanitized.fa"
2023-07-05 13:43:39.995125: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f69f/38ec/tmp50wvm_ce/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p"
2023-07-05 13:43:40.034684: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 0.5773 seconds and 51.9 Mi memory
2023-07-05 13:43:40.292136: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/86fd/70cf/tmptwbgq3hs/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p'" in 0.7758 seconds and 68.4 Mi memory
2023-07-05 13:43:40.296296: Running the command: "cactus_analyseAssembly HG00735.1.sanitized.fa"
2023-07-05 13:43:40.319603: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4cd1/25db/tmptaa93nbt/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p'" in 1.2182 seconds and 154.0 Mi memory
2023-07-05 13:43:40.325736: Running the command: "cactus_analyseAssembly HG02055.2.sanitized.fa"
2023-07-05 13:43:40.355532: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 0.5934 seconds and 52.1 Mi memory
2023-07-05 13:43:40.398408: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/de4b/fa61/tmpxk6o1kc3/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p'" in 1.2607 seconds and 153.9 Mi memory
2023-07-05 13:43:40.405126: Running the command: "cactus_analyseAssembly HG00438.1.sanitized.fa"
2023-07-05 13:43:40.425489: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/42d3/4e0a/tmpkwwi59vb/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p'" in 0.8506 seconds and 76.9 Mi memory
2023-07-05 13:43:40.430307: Running the command: "cactus_analyseAssembly HG03516.1.sanitized.fa"
2023-07-05 13:43:40.492261: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/77a8/d128/tmpcye3lpj6/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p'" in 0.8379 seconds and 52.4 Mi memory
2023-07-05 13:43:40.496454: Running the command: "cactus_analyseAssembly HG02818.1.sanitized.fa"
2023-07-05 13:43:40.615892: Successfully ran: "cactus_analyseAssembly HG03453.1.sanitized.fa" in 0.6569 seconds and 51.9 Mi memory
2023-07-05 13:43:40.617788: Successfully ran: "cactus_analyseAssembly HG02559.2.sanitized.fa" in 0.6333 seconds and 153.9 Mi memory
2023-07-05 13:43:40.651008: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4b10/9c0e/tmpoon2hs_x/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p'" in 0.8261 seconds and 154.0 Mi memory
2023-07-05 13:43:40.655277: Running the command: "cactus_analyseAssembly HG01123.2.sanitized.fa"
2023-07-05 13:43:40.744651: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5bc2/1e24/tmp3uszan1k/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p'" in 0.7954 seconds and 51.9 Mi memory
2023-07-05 13:43:40.748534: Running the command: "cactus_analyseAssembly HG01243.2.sanitized.fa"
2023-07-05 13:43:40.868468: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f69f/38ec/tmp50wvm_ce/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p'" in 0.8723 seconds and 51.9 Mi memory
2023-07-05 13:43:40.872773: Running the command: "cactus_analyseAssembly HG03453.2.sanitized.fa"
2023-07-05 13:43:40.899733: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/361a/6add/tmple9y00ho/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p'" in 1.2325 seconds and 154.0 Mi memory
2023-07-05 13:43:40.905741: Running the command: "cactus_analyseAssembly HG01175.2.sanitized.fa"
2023-07-05 13:43:40.918052: Successfully ran: "cactus_analyseAssembly HG00735.1.sanitized.fa" in 0.6209 seconds and 68.4 Mi memory
2023-07-05 13:43:41.110103: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 0.6789 seconds and 76.9 Mi memory
2023-07-05 13:43:41.133478: Successfully ran: "cactus_analyseAssembly HG02818.1.sanitized.fa" in 0.6361 seconds and 52.4 Mi memory
2023-07-05 13:43:41.269091: Successfully ran: "cactus_analyseAssembly HG02055.2.sanitized.fa" in 0.9425 seconds and 153.9 Mi memory
2023-07-05 13:43:41.317321: Successfully ran: "cactus_analyseAssembly HG01123.2.sanitized.fa" in 0.6612 seconds and 153.9 Mi memory
2023-07-05 13:43:41.366739: Successfully ran: "cactus_analyseAssembly HG01243.2.sanitized.fa" in 0.6173 seconds and 51.9 Mi memory
2023-07-05 13:43:41.367886: Successfully ran: "cactus_analyseAssembly HG00438.1.sanitized.fa" in 0.9619 seconds and 153.9 Mi memory
2023-07-05 13:43:41.570246: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 0.6966 seconds and 51.9 Mi memory
2023-07-05 13:43:41.835189: Successfully ran: "cactus_analyseAssembly HG01175.2.sanitized.fa" in 0.9285 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:43:43: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 10 Total-length: 88132359 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28943776 Median-sequence-length: 4114764 Max-sequence-length: 32327394 Min-sequence-length: 41037

Got message from job at time 07-05-2023 13:43:43: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 5 Total-length: 86519794 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32308382 Median-sequence-length: 12616982 Max-sequence-length: 40645796 Min-sequence-length: 111644

Got message from job at time 07-05-2023 13:43:43: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 6 Total-length: 88925779 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 53367318 Median-sequence-length: 544096 Max-sequence-length: 53367318 Min-sequence-length: 82197

Got message from job at time 07-05-2023 13:43:43: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 3 Total-length: 93797878 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 92583155 Median-sequence-length: 952134 Max-sequence-length: 92583155 Min-sequence-length: 262589

Got message from job at time 07-05-2023 13:43:43: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 5 Total-length: 90629417 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 88757024 Median-sequence-length: 739108 Max-sequence-length: 88757024 Min-sequence-length: 51942

Got message from job at time 07-05-2023 13:43:43: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 4 Total-length: 98516056 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 97261590 Median-sequence-length: 795908 Max-sequence-length: 97261590 Min-sequence-length: 85108

Got message from job at time 07-05-2023 13:43:43: Assembly stats for HG02622.1: Input-sample: HG02622.1.sanitized.fa Total-sequences: 2 Total-length: 101332151 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 100320052 Median-sequence-length: 100320052 Max-sequence-length: 100320052 Min-sequence-length: 1012099

Got message from job at time 07-05-2023 13:43:43: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 2 Total-length: 89502517 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 89427290 Median-sequence-length: 89427290 Max-sequence-length: 89427290 Min-sequence-length: 75227

Got message from job at time 07-05-2023 13:43:43: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 5 Total-length: 91030925 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23828066 Median-sequence-length: 16842203 Max-sequence-length: 36494829 Min-sequence-length: 949214

Got message from job at time 07-05-2023 13:43:43: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 3 Total-length: 89397296 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 89346757 Median-sequence-length: 28460 Max-sequence-length: 89346757 Min-sequence-length: 22079

Got message from job at time 07-05-2023 13:43:43: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 5 Total-length: 93928055 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 93471543 Median-sequence-length: 49076 Max-sequence-length: 93471543 Min-sequence-length: 30279

2023-07-05 13:43:44.385245: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/11e8/c6f1/tmp84klzxh7/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p"
2023-07-05 13:43:44.392911: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6cbe/e936/tmpzgjq3us2/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p"
2023-07-05 13:43:45.173259: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/11e8/c6f1/tmp84klzxh7/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p'" in 0.787 seconds and 51.9 Mi memory
2023-07-05 13:43:45.177856: Running the command: "cactus_analyseAssembly HG03098.1.sanitized.fa"
2023-07-05 13:43:45.242583: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6cbe/e936/tmpzgjq3us2/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p'" in 0.8487 seconds and 68.4 Mi memory
2023-07-05 13:43:45.247064: Running the command: "cactus_analyseAssembly HG01358.2.sanitized.fa"
2023-07-05 13:43:45.291718: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b82f/c42b/tmpmco_m9ho/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p"
2023-07-05 13:43:45.297164: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/08cb/7582/tmprik0z4w7/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p"
2023-07-05 13:43:45.302084: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e777/2b23/tmpb2jwsate/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
2023-07-05 13:43:45.308844: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/94a3/4d85/tmpjdfyznz3/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p"
2023-07-05 13:43:45.308859: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2387/75fe/tmp_sa54sjj/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p"
2023-07-05 13:43:45.309141: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2550/b84e/tmpva49ni7x/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p"
2023-07-05 13:43:45.310834: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/61b5/d357/tmpvugrtg2w/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-05 13:43:45.316931: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbb8/25a2/tmp3hgo0z0r/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p"
2023-07-05 13:43:45.317212: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/cc5b/41b6/tmpoo3ktbon/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-05 13:43:45.318007: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8ee4/e736/tmpcfqtx8o3/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p"
2023-07-05 13:43:45.321118: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f11/c26a/tmpajfw3170/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p"
2023-07-05 13:43:45.324189: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ed98/d3ae/tmp29z4_end/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:43:45.324331: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8b9a/d5f6/tmp0urchya7/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-05 13:43:45.324436: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5a26/6954/tmpdiw95hd5/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p"
2023-07-05 13:43:45.324868: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/85b2/a77d/tmps29nwonm/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p"
2023-07-05 13:43:45.326015: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7eec/f271/tmp47yun2bc/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p"
2023-07-05 13:43:45.327029: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e3c5/732d/tmpxdcekup9/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-05 13:43:45.327110: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/84e1/0865/tmp2u2q9gk7/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
2023-07-05 13:43:45.785779: Successfully ran: "cactus_analyseAssembly HG03098.1.sanitized.fa" in 0.6072 seconds and 51.9 Mi memory
2023-07-05 13:43:45.882134: Successfully ran: "cactus_analyseAssembly HG01358.2.sanitized.fa" in 0.6342 seconds and 68.4 Mi memory
2023-07-05 13:43:46.073005: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/b82f/c42b/tmpmco_m9ho/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p'" in 0.78 seconds and 54.5 Mi memory
2023-07-05 13:43:46.079641: Running the command: "cactus_analyseAssembly HG02818.2.sanitized.fa"
2023-07-05 13:43:46.111856: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8ee4/e736/tmpcfqtx8o3/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p'" in 0.7925 seconds and 26.4 Mi memory
2023-07-05 13:43:46.116458: Running the command: "cactus_analyseAssembly NA20129.1.sanitized.fa"
2023-07-05 13:43:46.133282: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/94a3/4d85/tmpjdfyznz3/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p'" in 0.8234 seconds and 74.0 Mi memory
2023-07-05 13:43:46.138230: Running the command: "cactus_analyseAssembly HG02055.2.sanitized.fa"
2023-07-05 13:43:46.139372: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/dbb8/25a2/tmp3hgo0z0r/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p'" in 0.8214 seconds and 59.1 Mi memory
2023-07-05 13:43:46.145737: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e777/2b23/tmpb2jwsate/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p'" in 0.8423 seconds and 154.0 Mi memory
2023-07-05 13:43:46.147361: Running the command: "cactus_analyseAssembly HG01071.1.sanitized.fa"
2023-07-05 13:43:46.147723: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2550/b84e/tmpva49ni7x/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p'" in 0.8374 seconds and 54.5 Mi memory
2023-07-05 13:43:46.150270: Running the command: "cactus_analyseAssembly HG00438.2.sanitized.fa"
2023-07-05 13:43:46.152659: Running the command: "cactus_analyseAssembly HG02109.1.sanitized.fa"
2023-07-05 13:43:46.159248: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/61b5/d357/tmpvugrtg2w/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p'" in 0.8471 seconds and 154.0 Mi memory
2023-07-05 13:43:46.159761: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8b9a/d5f6/tmp0urchya7/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p'" in 0.8341 seconds and 59.9 Mi memory
2023-07-05 13:43:46.162769: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/85b2/a77d/tmps29nwonm/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p'" in 0.8367 seconds and 51.9 Mi memory
2023-07-05 13:43:46.164219: Running the command: "cactus_analyseAssembly HG00733.1.sanitized.fa"
2023-07-05 13:43:46.165822: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/08cb/7582/tmprik0z4w7/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p'" in 0.8674 seconds and 154.0 Mi memory
2023-07-05 13:43:46.167506: Running the command: "cactus_analyseAssembly HG02145.2.sanitized.fa"
2023-07-05 13:43:46.167775: Running the command: "cactus_analyseAssembly HG00733.2.sanitized.fa"
2023-07-05 13:43:46.170723: Running the command: "cactus_analyseAssembly HG00438.1.sanitized.fa"
2023-07-05 13:43:46.173160: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2387/75fe/tmp_sa54sjj/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p'" in 0.863 seconds and 154.0 Mi memory
2023-07-05 13:43:46.177588: Running the command: "cactus_analyseAssembly HG01123.1.sanitized.fa"
2023-07-05 13:43:46.178779: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/ed98/d3ae/tmp29z4_end/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p'" in 0.8534 seconds and 51.9 Mi memory
2023-07-05 13:43:46.184673: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/84e1/0865/tmp2u2q9gk7/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p'" in 0.8565 seconds and 52.9 Mi memory
2023-07-05 13:43:46.186943: Running the command: "cactus_analyseAssembly HG02145.1.sanitized.fa"
2023-07-05 13:43:46.189366: Running the command: "cactus_analyseAssembly HG02717.1.sanitized.fa"
2023-07-05 13:43:46.192451: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7eec/f271/tmp47yun2bc/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p'" in 0.8652 seconds and 51.9 Mi memory
2023-07-05 13:43:46.194445: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/cc5b/41b6/tmpoo3ktbon/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p'" in 0.8762 seconds and 154.0 Mi memory
2023-07-05 13:43:46.197343: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
2023-07-05 13:43:46.199398: Running the command: "cactus_analyseAssembly HG01258.1.sanitized.fa"
2023-07-05 13:43:46.210403: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f11/c26a/tmpajfw3170/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p'" in 0.888 seconds and 154.0 Mi memory
2023-07-05 13:43:46.217782: Running the command: "cactus_analyseAssembly HG02257.1.sanitized.fa"
2023-07-05 13:43:46.245226: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e3c5/732d/tmpxdcekup9/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p'" in 0.9171 seconds and 154.0 Mi memory
2023-07-05 13:43:46.249819: Running the command: "cactus_analyseAssembly HG01106.2.sanitized.fa"
Got message from job at time 07-05-2023 13:43:46: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 5 Total-length: 89780797 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 53756995 Median-sequence-length: 1088791 Max-sequence-length: 53756995 Min-sequence-length: 90308

2023-07-05 13:43:46.402306: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5a26/6954/tmpdiw95hd5/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p'" in 1.0767 seconds and 51.9 Mi memory
2023-07-05 13:43:46.409961: Running the command: "cactus_analyseAssembly HG01243.1.sanitized.fa"
2023-07-05 13:43:46.695772: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 0.6152 seconds and 54.4 Mi memory
2023-07-05 13:43:46.730335: Successfully ran: "cactus_analyseAssembly NA20129.1.sanitized.fa" in 0.613 seconds and 26.3 Mi memory
2023-07-05 13:43:46.773438: Successfully ran: "cactus_analyseAssembly HG02109.1.sanitized.fa" in 0.6198 seconds and 54.4 Mi memory
2023-07-05 13:43:46.778490: Successfully ran: "cactus_analyseAssembly HG01071.1.sanitized.fa" in 0.6301 seconds and 59.1 Mi memory
2023-07-05 13:43:46.783211: Successfully ran: "cactus_analyseAssembly HG02055.2.sanitized.fa" in 0.644 seconds and 74.0 Mi memory
2023-07-05 13:43:46.802729: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 0.6344 seconds and 51.9 Mi memory
2023-07-05 13:43:46.803624: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 0.6348 seconds and 59.8 Mi memory
2023-07-05 13:43:46.813069: Successfully ran: "cactus_analyseAssembly HG00438.2.sanitized.fa" in 0.662 seconds and 153.9 Mi memory
2023-07-05 13:43:46.843162: Successfully ran: "cactus_analyseAssembly HG01123.1.sanitized.fa" in 0.6647 seconds and 153.9 Mi memory
2023-07-05 13:43:46.844426: Successfully ran: "cactus_analyseAssembly HG00438.1.sanitized.fa" in 0.6729 seconds and 153.9 Mi memory
2023-07-05 13:43:46.844721: Successfully ran: "cactus_analyseAssembly HG02145.1.sanitized.fa" in 0.6566 seconds and 51.9 Mi memory
2023-07-05 13:43:46.844949: Successfully ran: "cactus_analyseAssembly HG02717.1.sanitized.fa" in 0.6548 seconds and 52.9 Mi memory
2023-07-05 13:43:46.854815: Successfully ran: "cactus_analyseAssembly HG03098.2.sanitized.fa" in 0.6567 seconds and 51.9 Mi memory
2023-07-05 13:43:46.880002: Successfully ran: "cactus_analyseAssembly HG02257.1.sanitized.fa" in 0.6613 seconds and 153.9 Mi memory
2023-07-05 13:43:46.883141: Successfully ran: "cactus_analyseAssembly HG01258.1.sanitized.fa" in 0.6828 seconds and 153.9 Mi memory
2023-07-05 13:43:46.988091: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 0.7373 seconds and 153.9 Mi memory
2023-07-05 13:43:47.047204: Successfully ran: "cactus_analyseAssembly HG01243.1.sanitized.fa" in 0.6362 seconds and 51.9 Mi memory
2023-07-05 13:43:47.082511: Successfully ran: "cactus_analyseAssembly HG00733.1.sanitized.fa" in 0.9175 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:43:47: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 15002 Total-length: 135648243 Proportion-repeat-masked: 0.001014 ProportionNs: 0.001014 Total-Ns: 137490 N50: 78143 Median-sequence-length: 106 Max-sequence-length: 2524841 Min-sequence-length: 1

2023-07-05 13:43:47.972110: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c0c/db47/tmpr196__wb/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-05 13:43:48.028721: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e209/c92b/tmpeq1sxmcb/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p"
Got message from job at time 07-05-2023 13:43:48: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 9 Total-length: 88621635 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 85033770 Median-sequence-length: 177353 Max-sequence-length: 85033770 Min-sequence-length: 56860

2023-07-05 13:43:48.160225: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f5e2/8d51/tmpx1yox3l8/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p"
2023-07-05 13:43:48.164203: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f039/3c5f/tmptua2ahm7/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p"
2023-07-05 13:43:48.173980: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/d968/7a66/tmpk_wwjujp/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p"
2023-07-05 13:43:48.183864: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/06db/18a8/tmp2tb5uqn9/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
2023-07-05 13:43:48.216980: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ffe0/38c1/tmpgfwapxvl/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p"
2023-07-05 13:43:48.260604: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e51d/b5c1/tmpsovbjbss/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p"
2023-07-05 13:43:48.263054: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e599/8cb7/tmp8hzlmdwh/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p"
2023-07-05 13:43:48.282228: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ebd4/c5c5/tmpozerzovd/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p"
2023-07-05 13:43:48.327304: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8fe5/048c/tmpe4o98fue/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p"
2023-07-05 13:43:48.344235: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/96cb/a0f5/tmpenodc5y7/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p"
2023-07-05 13:43:48.408950: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e209/c92b/tmpeq1sxmcb/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p'" in 0.3792 seconds and 17.9 Mi memory
2023-07-05 13:43:48.411224: Running the command: "cactus_analyseAssembly HG03098.1.sanitized.fa"
2023-07-05 13:43:48.426969: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e57d/439b/tmpcrr0s5p0/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p"
2023-07-05 13:43:48.430656: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/61f4/1dd4/tmp8ed9xs3z/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p"
2023-07-05 13:43:48.440888: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/44fa/7784/tmpjls9pre0/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-05 13:43:48.449089: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6979/5c9f/tmp37ljlkx9/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p"
2023-07-05 13:43:48.454171: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/f34d/df43/tmpo5sedb90/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p"
2023-07-05 13:43:48.463342: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/2ac3/bdb7/tmpl0oula5f/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p"
2023-07-05 13:43:48.469172: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/15ff/3ed8/tmp016mvymf/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p"
2023-07-05 13:43:48.491477: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a66a/9734/tmpy0sp9m7v/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
2023-07-05 13:43:48.493665: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f5e2/8d51/tmpx1yox3l8/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p'" in 0.3322 seconds and 17.8 Mi memory
2023-07-05 13:43:48.495414: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f039/3c5f/tmptua2ahm7/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p'" in 0.3301 seconds and 17.8 Mi memory
2023-07-05 13:43:48.495656: Running the command: "cactus_analyseAssembly HG00741.2.sanitized.fa"
Got message from job at time 07-05-2023 13:43:48: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 3 Total-length: 41609197 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25140965 Median-sequence-length: 12752165 Max-sequence-length: 25140965 Min-sequence-length: 3716067

2023-07-05 13:43:48.497236: Running the command: "cactus_analyseAssembly HG01123.1.sanitized.fa"
2023-07-05 13:43:48.538385: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/305f/e13d/tmp4i_4zsqo/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p"
2023-07-05 13:43:48.539958: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f979/9012/tmp62qcml8t/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
2023-07-05 13:43:48.567385: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/d968/7a66/tmpk_wwjujp/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p'" in 0.3923 seconds and 51.9 Mi memory
2023-07-05 13:43:48.569481: Running the command: "cactus_analyseAssembly HG02622.1.sanitized.fa"
2023-07-05 13:43:48.572739: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/9df0/aaa2/tmphy0gfzlq/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p"
2023-07-05 13:43:48.581837: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ba04/bd85/tmp62d91mbv/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-05 13:43:48.584667: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb0f/d2c4/tmpt8rsib2w/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-05 13:43:48.586027: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2bb2/6b7c/tmpig9vux6a/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p"
2023-07-05 13:43:48.590776: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/3a75/a73e/tmpjeu0glgb/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
2023-07-05 13:43:48.593082: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/da06/5e08/tmpadt695nf/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p"
2023-07-05 13:43:48.629530: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7874/6cae/tmphz91628p/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p"
2023-07-05 13:43:48.638817: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/06db/18a8/tmp2tb5uqn9/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p'" in 0.4538 seconds and 51.9 Mi memory
2023-07-05 13:43:48.640913: Running the command: "cactus_analyseAssembly CHM13.sanitized.fa"
2023-07-05 13:43:48.657633: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c237/b957/tmp5ni0_2o7/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p"
2023-07-05 13:43:48.665656: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e6b8/461a/tmpcl72u__k/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p"
2023-07-05 13:43:48.686323: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/cbdf/39e3/tmpzyrjk_ax/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-05 13:43:48.690418: Successfully ran: "cactus_analyseAssembly HG03098.1.sanitized.fa" in 0.2782 seconds and 17.8 Mi memory
2023-07-05 13:43:48.697768: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8830/b519/tmpcw3ouf2u/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p"
2023-07-05 13:43:48.704946: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f877/3687/tmp9qm2m1hg/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p"
2023-07-05 13:43:48.711156: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/19e1/a9f9/tmp6e6u2l0l/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p"
2023-07-05 13:43:48.742036: Successfully ran: "cactus_analyseAssembly HG00741.2.sanitized.fa" in 0.2455 seconds and 17.8 Mi memory
2023-07-05 13:43:48.744772: Successfully ran: "cactus_analyseAssembly HG01123.1.sanitized.fa" in 0.2467 seconds and 17.8 Mi memory
2023-07-05 13:43:48.747670: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4301/540c/tmp29leclks/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p"
Got message from job at time 07-05-2023 13:43:48: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 2 Total-length: 37157788 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32777912 Median-sequence-length: 32777912 Max-sequence-length: 32777912 Min-sequence-length: 4379876

2023-07-05 13:43:48.835604: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b187/a991/tmp85vihnwh/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
2023-07-05 13:43:48.840441: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/379f/fa4c/tmp4skbnu8b/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
2023-07-05 13:43:48.865185: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/80ff/24f0/tmpb1jynh__/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-05 13:43:48.872986: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/9df0/aaa2/tmphy0gfzlq/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p'" in 0.2989 seconds and 51.9 Mi memory
2023-07-05 13:43:48.874527: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/305f/e13d/tmp4i_4zsqo/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p'" in 0.3349 seconds and 17.9 Mi memory
2023-07-05 13:43:48.874860: Running the command: "cactus_analyseAssembly HG02055.1.sanitized.fa"
2023-07-05 13:43:48.876692: Running the command: "cactus_analyseAssembly HG03540.1.sanitized.fa"
2023-07-05 13:43:48.877951: Successfully ran: "cactus_analyseAssembly HG02622.1.sanitized.fa" in 0.3076 seconds and 51.9 Mi memory
2023-07-05 13:43:48.880617: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7c0c/db47/tmpr196__wb/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p'" in 0.9071 seconds and 70.0 Mi memory
2023-07-05 13:43:48.885298: Running the command: "cactus_analyseAssembly HG03516.2.sanitized.fa"
2023-07-05 13:43:48.906789: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ba04/bd85/tmp62d91mbv/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p'" in 0.3237 seconds and 19.4 Mi memory
2023-07-05 13:43:48.908830: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb0f/d2c4/tmpt8rsib2w/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p'" in 0.3231 seconds and 23.8 Mi memory
2023-07-05 13:43:48.908978: Running the command: "cactus_analyseAssembly HG00621.1.sanitized.fa"
2023-07-05 13:43:48.910424: Running the command: "cactus_analyseAssembly HG00735.2.sanitized.fa"
2023-07-05 13:43:48.918026: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2bb2/6b7c/tmpig9vux6a/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p'" in 0.3308 seconds and 20.7 Mi memory
2023-07-05 13:43:48.919716: Running the command: "cactus_analyseAssembly HG00741.1.sanitized.fa"
2023-07-05 13:43:48.951605: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f437/0682/tmpek631hqc/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p"
2023-07-05 13:43:48.958630: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/700f/b4f7/tmpymjt9sdo/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:43:48.959846: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/708a/2929/tmpyurkmeec/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-05 13:43:48.970195: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/fcf4/4573/tmpazt5241h/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p"
2023-07-05 13:43:48.970849: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/fb00/677a/tmpafwg0vmc/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p"
2023-07-05 13:43:48.972448: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/3e23/3c5e/tmpjcfovzjx/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p"
2023-07-05 13:43:48.973658: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e163/7c42/tmp8z1vhcpv/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:43:48.978081: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7603/d705/tmpmkm3c8el/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p"
2023-07-05 13:43:48.979092: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/d3b7/2748/tmp39zdhs9t/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p"
2023-07-05 13:43:48.985994: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/d0c8/0dd0/tmp8htvqhwr/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-05 13:43:48.987943: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/3a75/a73e/tmpjeu0glgb/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p'" in 0.3962 seconds and 51.9 Mi memory
2023-07-05 13:43:48.987024: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1342/4679/tmpiqleex23/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p"
2023-07-05 13:43:48.990134: Running the command: "cactus_analyseAssembly HG00438.2.sanitized.fa"
2023-07-05 13:43:48.996193: Successfully ran: "cactus_analyseAssembly CHM13.sanitized.fa" in 0.3545 seconds and 51.9 Mi memory
2023-07-05 13:43:49.003495: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5d72/0403/tmpmxbwsihu/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p"
2023-07-05 13:43:49.008297: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/cbdf/39e3/tmpzyrjk_ax/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p'" in 0.3208 seconds and 19.4 Mi memory
2023-07-05 13:43:49.010031: Running the command: "cactus_analyseAssembly HG01258.1.sanitized.fa"
2023-07-05 13:43:49.021054: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e6b8/461a/tmpcl72u__k/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p'" in 0.3543 seconds and 51.9 Mi memory
2023-07-05 13:43:49.022891: Running the command: "cactus_analyseAssembly HG03516.1.sanitized.fa"
2023-07-05 13:43:49.030031: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/da06/5e08/tmpadt695nf/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p'" in 0.4357 seconds and 51.9 Mi memory
2023-07-05 13:43:49.054369: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1c94/80a8/tmp7a359xid/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
2023-07-05 13:43:49.057380: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/bf66/b989/tmprk_a1psd/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p"
2023-07-05 13:43:49.059156: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2307/104b/tmpw58kvbvh/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p"
2023-07-05 13:43:49.059187: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ec3a/3429/tmpiqmb04x8/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p"
2023-07-05 13:43:49.060765: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/bff5/87e2/tmpgbpqp16s/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p"
2023-07-05 13:43:49.066580: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f5cf/cd23/tmpbup5dwhc/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p"
2023-07-05 13:43:49.086666: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e599/8cb7/tmp8hzlmdwh/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p'" in 0.8222 seconds and 51.9 Mi memory
2023-07-05 13:43:49.092136: Running the command: "cactus_analyseAssembly HG03492.2.sanitized.fa"
2023-07-05 13:43:49.142504: Successfully ran: "cactus_analyseAssembly HG02055.1.sanitized.fa" in 0.2667 seconds and 51.9 Mi memory
2023-07-05 13:43:49.161658: Successfully ran: "cactus_analyseAssembly HG03540.1.sanitized.fa" in 0.2841 seconds and 17.8 Mi memory
2023-07-05 13:43:49.178877: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 0.269 seconds and 19.4 Mi memory
2023-07-05 13:43:49.183266: Successfully ran: "cactus_analyseAssembly HG00735.2.sanitized.fa" in 0.272 seconds and 23.8 Mi memory
2023-07-05 13:43:49.194090: Successfully ran: "cactus_analyseAssembly HG00741.1.sanitized.fa" in 0.2736 seconds and 20.7 Mi memory
2023-07-05 13:43:49.210897: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/96cb/a0f5/tmpenodc5y7/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p'" in 0.8654 seconds and 51.9 Mi memory
2023-07-05 13:43:49.216042: Running the command: "cactus_analyseAssembly HG02630.1.sanitized.fa"
2023-07-05 13:43:49.260463: Successfully ran: "cactus_analyseAssembly HG01258.1.sanitized.fa" in 0.2495 seconds and 19.4 Mi memory
2023-07-05 13:43:49.268989: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/15ff/3ed8/tmp016mvymf/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p'" in 0.7984 seconds and 51.9 Mi memory
2023-07-05 13:43:49.273976: Running the command: "cactus_analyseAssembly HG02723.2.sanitized.fa"
2023-07-05 13:43:49.278746: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8fe5/048c/tmpe4o98fue/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p'" in 0.95 seconds and 154.0 Mi memory
2023-07-05 13:43:49.284011: Running the command: "cactus_analyseAssembly HG02886.2.sanitized.fa"
2023-07-05 13:43:49.310400: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 0.2866 seconds and 51.9 Mi memory
2023-07-05 13:43:49.317377: Successfully ran: "cactus_analyseAssembly HG00438.2.sanitized.fa" in 0.3264 seconds and 51.9 Mi memory
2023-07-05 13:43:49.320260: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/44fa/7784/tmpjls9pre0/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p'" in 0.8779 seconds and 154.0 Mi memory
2023-07-05 13:43:49.325039: Running the command: "cactus_analyseAssembly HG00735.2.sanitized.fa"
2023-07-05 13:43:49.341613: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/87d8/3422/tmpzpyctdst/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p"
2023-07-05 13:43:49.342415: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/3da3/9223/tmptbo6uffy/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p"
2023-07-05 13:43:49.347002: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/c527/1d4a/tmprutzzbx5/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-05 13:43:49.352818: Successfully ran: "cactus_analyseAssembly HG02559.2.sanitized.fa" in 0.3198 seconds and 51.9 Mi memory
2023-07-05 13:43:49.384017: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4301/540c/tmp29leclks/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p'" in 0.6354 seconds and 51.9 Mi memory
2023-07-05 13:43:49.387118: Running the command: "cactus_analyseAssembly HG01109.2.sanitized.fa"
2023-07-05 13:43:49.389615: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6979/5c9f/tmp37ljlkx9/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p'" in 0.9391 seconds and 66.9 Mi memory
2023-07-05 13:43:49.394450: Running the command: "cactus_analyseAssembly HG01106.1.sanitized.fa"
2023-07-05 13:43:49.441347: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/f278/41aa/tmptjho_qqa/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p"
2023-07-05 13:43:49.446511: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/6da8/6eff/tmpvj5tphl9/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p"
2023-07-05 13:43:49.466926: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ffe0/38c1/tmpgfwapxvl/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p'" in 1.2486 seconds and 153.9 Mi memory
2023-07-05 13:43:49.472711: Running the command: "cactus_analyseAssembly HG02559.2.sanitized.fa"
2023-07-05 13:43:49.482443: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e51d/b5c1/tmpsovbjbss/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p'" in 1.2205 seconds and 153.9 Mi memory
2023-07-05 13:43:49.489726: Running the command: "cactus_analyseAssembly HG02486.2.sanitized.fa"
2023-07-05 13:43:49.490620: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ebd4/c5c5/tmpozerzovd/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p'" in 1.207 seconds and 60.9 Mi memory
2023-07-05 13:43:49.497025: Running the command: "cactus_analyseAssembly HG01243.1.sanitized.fa"
2023-07-05 13:43:49.501830: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f979/9012/tmp62qcml8t/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p'" in 0.9605 seconds and 153.9 Mi memory
2023-07-05 13:43:49.507247: Running the command: "cactus_analyseAssembly CHM13.sanitized.fa"
2023-07-05 13:43:49.509393: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 0.6233 seconds and 69.9 Mi memory
2023-07-05 13:43:49.527189: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8830/b519/tmpcw3ouf2u/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p'" in 0.828 seconds and 62.0 Mi memory
2023-07-05 13:43:49.532115: Running the command: "cactus_analyseAssembly HG02572.1.sanitized.fa"
2023-07-05 13:43:49.559546: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/fcf4/4573/tmpazt5241h/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p'" in 0.588 seconds and 51.9 Mi memory
2023-07-05 13:43:49.558542: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7874/6cae/tmphz91628p/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p'" in 0.9277 seconds and 153.9 Mi memory
2023-07-05 13:43:49.562281: Running the command: "cactus_analyseAssembly HG02109.1.sanitized.fa"
2023-07-05 13:43:49.563035: Running the command: "cactus_analyseAssembly HG01358.1.sanitized.fa"
2023-07-05 13:43:49.566836: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/f330/55ae/tmp2r8ofq44/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p"
2023-07-05 13:43:49.570152: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f877/3687/tmp9qm2m1hg/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p'" in 0.8639 seconds and 154.0 Mi memory
2023-07-05 13:43:49.572000: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/2826/14de/tmp0nhtdt92/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p"
2023-07-05 13:43:49.576057: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/fb00/677a/tmpafwg0vmc/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p'" in 0.6039 seconds and 51.9 Mi memory
2023-07-05 13:43:49.574765: Running the command: "cactus_analyseAssembly NA18906.1.sanitized.fa"
2023-07-05 13:43:49.578844: Running the command: "cactus_analyseAssembly HG00741.1.sanitized.fa"
2023-07-05 13:43:49.579190: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/8a70/0344/tmptafq_1cg/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p"
2023-07-05 13:43:49.584347: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/3e23/3c5e/tmpjcfovzjx/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 0.6107 seconds and 51.9 Mi memory
2023-07-05 13:43:49.585003: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/13dc/d42e/tmp0q689g2u/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p"
2023-07-05 13:43:49.587064: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-05 13:43:49.604846: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/19e1/a9f9/tmp6e6u2l0l/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p'" in 0.8923 seconds and 52.4 Mi memory
2023-07-05 13:43:49.610810: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/4300/1f90/tmp0bp3shbt/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p"
2023-07-05 13:43:49.612195: Running the command: "cactus_analyseAssembly HG00673.2.sanitized.fa"
2023-07-05 13:43:49.615232: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/86bd/81d4/tmp28hl9ebf/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
2023-07-05 13:43:49.630673: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/b1b5/9f66/tmpdll1hsoe/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-05 13:43:49.632766: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/c390/d98f/tmphpcts1lk/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
2023-07-05 13:43:49.631747: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c237/b957/tmp5ni0_2o7/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p'" in 0.9728 seconds and 153.9 Mi memory
2023-07-05 13:43:49.634465: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/0bd3/2871/tmp6rwe346a/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:43:49.633787: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/49d2/63ec/tmpa69wksog/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p"
2023-07-05 13:43:49.634089: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ed62/e3ba/tmperjceim9/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p"
2023-07-05 13:43:49.635649: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/f26e/9d6f/tmpl_x8ht_c/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p"
2023-07-05 13:43:49.635252: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/db49/471c/tmp7nfs9u0c/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p"
2023-07-05 13:43:49.637325: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/fc31/b921/tmp0bwvbiky/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-05 13:43:49.636975: Running the command: "cactus_analyseAssembly HG01258.2.sanitized.fa"
2023-07-05 13:43:49.644787: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/24ac/b552/tmp9lsz1ng_/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
2023-07-05 13:43:49.666062: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/f34d/df43/tmpo5sedb90/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p'" in 1.2108 seconds and 153.9 Mi memory
2023-07-05 13:43:49.670980: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/61f4/1dd4/tmp8ed9xs3z/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p'" in 1.239 seconds and 154.0 Mi memory
2023-07-05 13:43:49.672313: Running the command: "cactus_analyseAssembly HG03516.1.sanitized.fa"
2023-07-05 13:43:49.672553: Successfully ran: "cactus_analyseAssembly HG03492.2.sanitized.fa" in 0.5794 seconds and 51.9 Mi memory
2023-07-05 13:43:49.677601: Running the command: "cactus_analyseAssembly HG01258.2.sanitized.fa"
2023-07-05 13:43:49.679325: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/db27/3b2e/tmpk58upz2r/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-05 13:43:49.687450: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/2ac3/bdb7/tmpl0oula5f/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p'" in 1.223 seconds and 56.3 Mi memory
2023-07-05 13:43:49.689537: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/3b5f/ad19/tmpb_t13yj4/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p"
2023-07-05 13:43:49.691015: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e57d/439b/tmpcrr0s5p0/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p'" in 1.2626 seconds and 153.9 Mi memory
2023-07-05 13:43:49.694340: Running the command: "cactus_analyseAssembly HG03579.1.sanitized.fa"
2023-07-05 13:43:49.698129: Running the command: "cactus_analyseAssembly HG00741.2.sanitized.fa"
2023-07-05 13:43:49.723150: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a66a/9734/tmpy0sp9m7v/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p'" in 1.2306 seconds and 153.9 Mi memory
2023-07-05 13:43:49.729540: Running the command: "cactus_analyseAssembly HG01123.2.sanitized.fa"
2023-07-05 13:43:49.789972: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/6da8/6eff/tmpvj5tphl9/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p'" in 0.3421 seconds and 19.4 Mi memory
2023-07-05 13:43:49.791657: Running the command: "cactus_analyseAssembly HG03579.1.sanitized.fa"
2023-07-05 13:43:49.796248: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b187/a991/tmp85vihnwh/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p'" in 0.9594 seconds and 19.1 Mi memory
2023-07-05 13:43:49.801142: Running the command: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa"
2023-07-05 13:43:49.816572: Successfully ran: "cactus_analyseAssembly HG02630.1.sanitized.fa" in 0.5996 seconds and 51.9 Mi memory
2023-07-05 13:43:49.839756: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 0.4518 seconds and 51.9 Mi memory
2023-07-05 13:43:49.854796: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 0.5798 seconds and 51.9 Mi memory
2023-07-05 13:43:49.928442: Successfully ran: "cactus_analyseAssembly HG02886.2.sanitized.fa" in 0.6434 seconds and 153.9 Mi memory
2023-07-05 13:43:49.932956: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/87d8/3422/tmpzpyctdst/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p'" in 0.5902 seconds and 62.4 Mi memory
2023-07-05 13:43:49.935782: Running the command: "cactus_analyseAssembly HG02717.2.sanitized.fa"
2023-07-05 13:43:49.959575: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/c527/1d4a/tmprutzzbx5/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p'" in 0.6116 seconds and 51.9 Mi memory
2023-07-05 13:43:49.962667: Running the command: "cactus_analyseAssembly HG03516.2.sanitized.fa"
2023-07-05 13:43:49.964992: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/2b92/e171/tmpcb1e5dsk/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p"
2023-07-05 13:43:49.989252: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/3da3/9223/tmptbo6uffy/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p'" in 0.6457 seconds and 51.9 Mi memory
2023-07-05 13:43:49.989659: Successfully ran: "cactus_analyseAssembly HG00735.2.sanitized.fa" in 0.6638 seconds and 153.9 Mi memory
2023-07-05 13:43:49.992377: Running the command: "cactus_analyseAssembly HG03486.2.sanitized.fa"
2023-07-05 13:43:49.994418: Successfully ran: "cactus_analyseAssembly HG02109.1.sanitized.fa" in 0.4313 seconds and 51.9 Mi memory
2023-07-05 13:43:50.013445: Successfully ran: "cactus_analyseAssembly HG00741.1.sanitized.fa" in 0.4338 seconds and 51.9 Mi memory
2023-07-05 13:43:50.018554: Successfully ran: "cactus_analyseAssembly HG02723.1.sanitized.fa" in 0.4307 seconds and 51.9 Mi memory
2023-07-05 13:43:50.020620: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/4887/b50b/tmpz5jmzd9p/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
2023-07-05 13:43:50.029570: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/f278/41aa/tmptjho_qqa/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p'" in 0.5872 seconds and 51.9 Mi memory
2023-07-05 13:43:50.032639: Running the command: "cactus_analyseAssembly HG03098.1.sanitized.fa"
2023-07-05 13:43:50.036327: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/379f/fa4c/tmp4skbnu8b/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p'" in 1.1949 seconds and 68.2 Mi memory
2023-07-05 13:43:50.042455: Running the command: "cactus_analyseAssembly HG02109.2.sanitized.fa"
2023-07-05 13:43:50.062389: Successfully ran: "cactus_analyseAssembly HG01106.1.sanitized.fa" in 0.6669 seconds and 66.8 Mi memory
2023-07-05 13:43:50.106468: Successfully ran: "cactus_analyseAssembly HG03579.1.sanitized.fa" in 0.314 seconds and 19.4 Mi memory
2023-07-05 13:43:50.115370: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/f330/55ae/tmp2r8ofq44/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p'" in 0.5474 seconds and 17.8 Mi memory
2023-07-05 13:43:50.118660: Running the command: "cactus_analyseAssembly NA21309.1.sanitized.fa"
2023-07-05 13:43:50.133856: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 0.6007 seconds and 61.9 Mi memory
2023-07-05 13:43:50.138803: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f437/0682/tmpek631hqc/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p'" in 1.1858 seconds and 64.0 Mi memory
2023-07-05 13:43:50.144995: Running the command: "cactus_analyseAssembly HG01109.2.sanitized.fa"
2023-07-05 13:43:50.164813: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/80ff/24f0/tmpb1jynh__/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p'" in 1.2987 seconds and 153.9 Mi memory
2023-07-05 13:43:50.170820: Running the command: "cactus_analyseAssembly HG01106.2.sanitized.fa"
2023-07-05 13:43:50.170753: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e163/7c42/tmp8z1vhcpv/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p'" in 1.196 seconds and 51.9 Mi memory
2023-07-05 13:43:50.176813: Running the command: "cactus_analyseAssembly HG02145.1.sanitized.fa"
2023-07-05 13:43:50.178846: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/d0c8/0dd0/tmp8htvqhwr/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p'" in 1.1917 seconds and 57.3 Mi memory
2023-07-05 13:43:50.180475: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/700f/b4f7/tmpymjt9sdo/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p'" in 1.2207 seconds and 51.9 Mi memory
2023-07-05 13:43:50.184507: Running the command: "cactus_analyseAssembly HG00733.1.sanitized.fa"
2023-07-05 13:43:50.186816: Running the command: "cactus_analyseAssembly HG01109.1.sanitized.fa"
2023-07-05 13:43:50.208600: Successfully ran: "cactus_analyseAssembly NA18906.1.sanitized.fa" in 0.6329 seconds and 153.9 Mi memory
2023-07-05 13:43:50.214126: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/0bd3/2871/tmp6rwe346a/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 0.5785 seconds and 62.4 Mi memory
2023-07-05 13:43:50.217122: Running the command: "cactus_analyseAssembly GRCh38.sanitized.fa"
2023-07-05 13:43:50.216999: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/d3b7/2748/tmp39zdhs9t/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p'" in 1.2368 seconds and 61.5 Mi memory
2023-07-05 13:43:50.220896: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/c390/d98f/tmphpcts1lk/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p'" in 0.5872 seconds and 51.9 Mi memory
2023-07-05 13:43:50.222798: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/f26e/9d6f/tmpl_x8ht_c/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p'" in 0.5864 seconds and 51.9 Mi memory
2023-07-05 13:43:50.223595: Running the command: "cactus_analyseAssembly HG01123.2.sanitized.fa"
2023-07-05 13:43:50.221881: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1342/4679/tmpiqleex23/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p'" in 1.2337 seconds and 51.9 Mi memory
2023-07-05 13:43:50.222937: Running the command: "cactus_analyseAssembly HG01243.2.sanitized.fa"
2023-07-05 13:43:50.225380: Running the command: "cactus_analyseAssembly HG01978.2.sanitized.fa"
2023-07-05 13:43:50.223359: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7603/d705/tmpmkm3c8el/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 1.2442 seconds and 154.0 Mi memory
2023-07-05 13:43:50.229400: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/4300/1f90/tmp0bp3shbt/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p'" in 0.6174 seconds and 63.3 Mi memory
2023-07-05 13:43:50.227981: Running the command: "cactus_analyseAssembly HG02818.1.sanitized.fa"
2023-07-05 13:43:50.228733: Successfully ran: "cactus_analyseAssembly CHM13.sanitized.fa" in 0.7206 seconds and 153.9 Mi memory
2023-07-05 13:43:50.229587: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
2023-07-05 13:43:50.232738: Running the command: "cactus_analyseAssembly HG01978.1.sanitized.fa"
2023-07-05 13:43:50.238464: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/24ac/b552/tmp9lsz1ng_/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p'" in 0.5926 seconds and 51.9 Mi memory
2023-07-05 13:43:50.238143: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/bf66/b989/tmprk_a1psd/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p'" in 1.1797 seconds and 61.4 Mi memory
2023-07-05 13:43:50.241299: Running the command: "cactus_analyseAssembly HG02109.2.sanitized.fa"
2023-07-05 13:43:50.243967: Running the command: "cactus_analyseAssembly HG03540.2.sanitized.fa"
2023-07-05 13:43:50.247310: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 0.6341 seconds and 52.4 Mi memory
2023-07-05 13:43:50.249658: Successfully ran: "cactus_analyseAssembly HG01358.1.sanitized.fa" in 0.6857 seconds and 153.9 Mi memory
2023-07-05 13:43:50.251937: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5d72/0403/tmpmxbwsihu/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p'" in 1.2473 seconds and 51.9 Mi memory
2023-07-05 13:43:50.254781: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/708a/2929/tmpyurkmeec/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p'" in 1.2939 seconds and 153.9 Mi memory
2023-07-05 13:43:50.258129: Running the command: "cactus_analyseAssembly HG02723.2.sanitized.fa"
2023-07-05 13:43:50.260982: Running the command: "cactus_analyseAssembly HG00621.1.sanitized.fa"
2023-07-05 13:43:50.276151: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/bff5/87e2/tmpgbpqp16s/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p'" in 1.2139 seconds and 51.9 Mi memory
2023-07-05 13:43:50.282265: Running the command: "cactus_analyseAssembly NA21309.1.sanitized.fa"
2023-07-05 13:43:50.283480: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ec3a/3429/tmpiqmb04x8/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p'" in 1.2231 seconds and 53.4 Mi memory
2023-07-05 13:43:50.289434: Running the command: "cactus_analyseAssembly HG01928.2.sanitized.fa"
2023-07-05 13:43:50.294193: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f5cf/cd23/tmpbup5dwhc/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p'" in 1.2264 seconds and 154.0 Mi memory
2023-07-05 13:43:50.299968: Running the command: "cactus_analyseAssembly HG01952.2.sanitized.fa"
2023-07-05 13:43:50.313597: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2307/104b/tmpw58kvbvh/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p'" in 1.2534 seconds and 154.0 Mi memory
2023-07-05 13:43:50.319255: Running the command: "cactus_analyseAssembly NA18906.1.sanitized.fa"
2023-07-05 13:43:50.322181: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1c94/80a8/tmp7a359xid/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p'" in 1.2665 seconds and 154.0 Mi memory
2023-07-05 13:43:50.327693: Running the command: "cactus_analyseAssembly HG00621.2.sanitized.fa"
2023-07-05 13:43:50.374152: Successfully ran: "cactus_analyseAssembly HG01243.1.sanitized.fa" in 0.8762 seconds and 60.9 Mi memory
2023-07-05 13:43:50.378358: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 0.7405 seconds and 153.9 Mi memory
2023-07-05 13:43:50.386312: Successfully ran: "cactus_analyseAssembly HG02717.2.sanitized.fa" in 0.4496 seconds and 62.4 Mi memory
2023-07-05 13:43:50.405605: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 0.4419 seconds and 51.9 Mi memory
2023-07-05 13:43:50.410847: Successfully ran: "cactus_analyseAssembly HG02559.2.sanitized.fa" in 0.9372 seconds and 153.9 Mi memory
2023-07-05 13:43:50.414960: Successfully ran: "cactus_analyseAssembly HG02486.2.sanitized.fa" in 0.9243 seconds and 153.9 Mi memory
2023-07-05 13:43:50.432951: Successfully ran: "cactus_analyseAssembly HG03486.2.sanitized.fa" in 0.4396 seconds and 51.9 Mi memory
2023-07-05 13:43:50.477241: Successfully ran: "cactus_analyseAssembly HG03098.1.sanitized.fa" in 0.4438 seconds and 51.9 Mi memory
2023-07-05 13:43:50.558570: Successfully ran: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa" in 0.7566 seconds and 19.0 Mi memory
2023-07-05 13:43:50.571809: Successfully ran: "cactus_analyseAssembly NA21309.1.sanitized.fa" in 0.4521 seconds and 17.8 Mi memory
2023-07-05 13:43:50.571616: Successfully ran: "cactus_analyseAssembly HG03579.1.sanitized.fa" in 0.8764 seconds and 56.2 Mi memory
2023-07-05 13:43:50.581484: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 0.9084 seconds and 153.9 Mi memory
2023-07-05 13:43:50.603942: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 0.9254 seconds and 153.9 Mi memory
2023-07-05 13:43:50.608144: Successfully ran: "cactus_analyseAssembly HG00741.2.sanitized.fa" in 0.9092 seconds and 153.9 Mi memory
2023-07-05 13:43:50.646917: Successfully ran: "cactus_analyseAssembly HG01123.2.sanitized.fa" in 0.9165 seconds and 153.9 Mi memory
2023-07-05 13:43:50.697064: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/9852/7d66/tmpmjtyxeb8/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-05 13:43:50.711365: Successfully ran: "cactus_analyseAssembly HG01978.2.sanitized.fa" in 0.4852 seconds and 51.8 Mi memory
2023-07-05 13:43:50.711628: Successfully ran: "cactus_analyseAssembly HG01123.2.sanitized.fa" in 0.4873 seconds and 51.8 Mi memory
2023-07-05 13:43:50.733517: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 0.4913 seconds and 51.9 Mi memory
2023-07-05 13:43:50.735245: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 0.5171 seconds and 62.4 Mi memory
2023-07-05 13:43:50.758625: Successfully ran: "cactus_analyseAssembly HG01978.1.sanitized.fa" in 0.5248 seconds and 63.2 Mi memory
2023-07-05 13:43:50.777269: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/8a70/0344/tmptafq_1cg/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p'" in 1.1968 seconds and 61.4 Mi memory
2023-07-05 13:43:50.782791: Running the command: "cactus_analyseAssembly HG02630.1.sanitized.fa"
2023-07-05 13:43:50.797855: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/2826/14de/tmp0nhtdt92/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p'" in 1.2246 seconds and 154.0 Mi memory
2023-07-05 13:43:50.800527: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/13dc/d42e/tmp0q689g2u/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p'" in 1.2142 seconds and 51.9 Mi memory
2023-07-05 13:43:50.803944: Running the command: "cactus_analyseAssembly HG01106.1.sanitized.fa"
2023-07-05 13:43:50.807069: Running the command: "cactus_analyseAssembly NA20129.2.sanitized.fa"
2023-07-05 13:43:50.843330: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/86bd/81d4/tmp28hl9ebf/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p'" in 1.2267 seconds and 154.0 Mi memory
2023-07-05 13:43:50.849755: Running the command: "cactus_analyseAssembly HG00438.2.sanitized.fa"
2023-07-05 13:43:50.852452: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ed62/e3ba/tmperjceim9/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p'" in 1.2174 seconds and 51.9 Mi memory
2023-07-05 13:43:50.856572: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/fc31/b921/tmp0bwvbiky/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p'" in 1.2181 seconds and 68.4 Mi memory
2023-07-05 13:43:50.858188: Running the command: "cactus_analyseAssembly HG03098.1.sanitized.fa"
2023-07-05 13:43:50.862372: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/b1b5/9f66/tmpdll1hsoe/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p'" in 1.2303 seconds and 154.0 Mi memory
2023-07-05 13:43:50.863894: Running the command: "cactus_analyseAssembly HG00733.2.sanitized.fa"
2023-07-05 13:43:50.873316: Running the command: "cactus_analyseAssembly HG01258.1.sanitized.fa"
2023-07-05 13:43:50.873730: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/db49/471c/tmp7nfs9u0c/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p'" in 1.2372 seconds and 154.0 Mi memory
2023-07-05 13:43:50.879202: Running the command: "cactus_analyseAssembly HG01071.1.sanitized.fa"
2023-07-05 13:43:50.896839: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/2b92/e171/tmpcb1e5dsk/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p'" in 0.9305 seconds and 51.9 Mi memory
2023-07-05 13:43:50.899991: Running the command: "cactus_analyseAssembly HG02559.2.sanitized.fa"
2023-07-05 13:43:50.907146: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/49d2/63ec/tmpa69wksog/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p'" in 1.2721 seconds and 51.9 Mi memory
2023-07-05 13:43:50.912738: Running the command: "cactus_analyseAssembly HG03492.1.sanitized.fa"
2023-07-05 13:43:50.921701: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 0.8783 seconds and 68.1 Mi memory
2023-07-05 13:43:50.954106: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/db27/3b2e/tmpk58upz2r/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p'" in 1.2737 seconds and 154.0 Mi memory
2023-07-05 13:43:50.965547: Running the command: "cactus_analyseAssembly HG00735.2.sanitized.fa"
2023-07-05 13:43:50.967416: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/3b5f/ad19/tmpb_t13yj4/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p'" in 1.2768 seconds and 153.9 Mi memory
2023-07-05 13:43:50.973585: Running the command: "cactus_analyseAssembly HG03486.2.sanitized.fa"
2023-07-05 13:43:51.036353: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 0.8904 seconds and 64.0 Mi memory
2023-07-05 13:43:51.065730: Successfully ran: "cactus_analyseAssembly HG02145.1.sanitized.fa" in 0.888 seconds and 51.9 Mi memory
2023-07-05 13:43:51.073299: Successfully ran: "cactus_analyseAssembly HG00733.1.sanitized.fa" in 0.888 seconds and 57.3 Mi memory
2023-07-05 13:43:51.086910: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 0.8991 seconds and 51.9 Mi memory
2023-07-05 13:43:51.102923: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 0.9312 seconds and 153.9 Mi memory
2023-07-05 13:43:51.114806: Successfully ran: "cactus_analyseAssembly HG01243.2.sanitized.fa" in 0.891 seconds and 61.4 Mi memory
2023-07-05 13:43:51.125590: Successfully ran: "cactus_analyseAssembly HG02818.1.sanitized.fa" in 0.8967 seconds and 51.9 Mi memory
2023-07-05 13:43:51.132831: Successfully ran: "cactus_analyseAssembly HG03540.2.sanitized.fa" in 0.8882 seconds and 61.4 Mi memory
2023-07-05 13:43:51.159805: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 0.9008 seconds and 51.9 Mi memory
2023-07-05 13:43:51.178776: Successfully ran: "cactus_analyseAssembly HG02080.2.sanitized.fa" in 0.9482 seconds and 153.9 Mi memory
2023-07-05 13:43:51.179304: Successfully ran: "cactus_analyseAssembly HG01928.2.sanitized.fa" in 0.8889 seconds and 53.4 Mi memory
2023-07-05 13:43:51.189043: Successfully ran: "cactus_analyseAssembly NA21309.1.sanitized.fa" in 0.906 seconds and 51.9 Mi memory
2023-07-05 13:43:51.196279: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 0.9344 seconds and 153.9 Mi memory
2023-07-05 13:43:51.255974: Successfully ran: "cactus_analyseAssembly HG01952.2.sanitized.fa" in 0.955 seconds and 153.9 Mi memory
2023-07-05 13:43:51.265345: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/4887/b50b/tmpz5jmzd9p/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p'" in 1.2436 seconds and 154.0 Mi memory
2023-07-05 13:43:51.271713: Running the command: "cactus_analyseAssembly HG02717.1.sanitized.fa"
2023-07-05 13:43:51.278098: Successfully ran: "cactus_analyseAssembly NA18906.1.sanitized.fa" in 0.958 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:43:51: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 3 Total-length: 38020820 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 21524088 Median-sequence-length: 15367384 Max-sequence-length: 21524088 Min-sequence-length: 1129348

2023-07-05 13:43:51.291268: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 0.9627 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:43:51: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 3 Total-length: 132829595 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 97871895 Median-sequence-length: 34935768 Max-sequence-length: 97871895 Min-sequence-length: 21932

2023-07-05 13:43:51.380318: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/9852/7d66/tmpmjtyxeb8/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p'" in 0.6818 seconds and 51.9 Mi memory
2023-07-05 13:43:51.383894: Running the command: "cactus_analyseAssembly HG01106.2.sanitized.fa"
Got message from job at time 07-05-2023 13:43:51: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 6 Total-length: 35689192 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12734989 Median-sequence-length: 3281573 Max-sequence-length: 17825655 Min-sequence-length: 24423

Got message from job at time 07-05-2023 13:43:51: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 3 Total-length: 35368558 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12764123 Median-sequence-length: 12764123 Max-sequence-length: 16766193 Min-sequence-length: 5838242

Got message from job at time 07-05-2023 13:43:51: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 5 Total-length: 39337802 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12735015 Median-sequence-length: 6974821 Max-sequence-length: 18653676 Min-sequence-length: 339590

Got message from job at time 07-05-2023 13:43:51: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 5 Total-length: 37024855 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20405270 Median-sequence-length: 4450421 Max-sequence-length: 20405270 Min-sequence-length: 136039

2023-07-05 13:43:51.580869: Successfully ran: "cactus_analyseAssembly HG02559.2.sanitized.fa" in 0.68 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:43:51: Assembly stats for HG00735.1: Input-sample: HG00735.1.sanitized.fa Total-sequences: 4 Total-length: 87772973 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 70718867 Median-sequence-length: 15560784 Max-sequence-length: 70718867 Min-sequence-length: 72524

2023-07-05 13:43:51.702282: Successfully ran: "cactus_analyseAssembly HG02630.1.sanitized.fa" in 0.9187 seconds and 61.4 Mi memory
Got message from job at time 07-05-2023 13:43:51: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 8 Total-length: 133907909 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26823154 Median-sequence-length: 19206115 Max-sequence-length: 40691917 Min-sequence-length: 1742721

2023-07-05 13:43:51.731475: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 0.9235 seconds and 51.9 Mi memory
2023-07-05 13:43:51.764429: Successfully ran: "cactus_analyseAssembly HG03098.1.sanitized.fa" in 0.9054 seconds and 51.9 Mi memory
2023-07-05 13:43:51.781533: Successfully ran: "cactus_analyseAssembly HG01106.1.sanitized.fa" in 0.9767 seconds and 153.9 Mi memory
2023-07-05 13:43:51.792316: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 0.9275 seconds and 68.4 Mi memory
Got message from job at time 07-05-2023 13:43:51: Assembly stats for HG03453.1: Input-sample: HG03453.1.sanitized.fa Total-sequences: 11 Total-length: 99640718 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51292711 Median-sequence-length: 580190 Max-sequence-length: 51292711 Min-sequence-length: 27428

2023-07-05 13:43:51.814601: Successfully ran: "cactus_analyseAssembly HG00438.2.sanitized.fa" in 0.9638 seconds and 153.9 Mi memory
2023-07-05 13:43:51.817215: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 0.9038 seconds and 51.9 Mi memory
2023-07-05 13:43:51.839343: Successfully ran: "cactus_analyseAssembly HG01258.1.sanitized.fa" in 0.965 seconds and 153.9 Mi memory
2023-07-05 13:43:51.843011: Successfully ran: "cactus_analyseAssembly HG01071.1.sanitized.fa" in 0.9629 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:43:51: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 8 Total-length: 41712385 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12738503 Median-sequence-length: 3348167 Max-sequence-length: 14498327 Min-sequence-length: 20444

2023-07-05 13:43:51.923409: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/d3c6/0f11/tmpz4o4jy1s/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p"
2023-07-05 13:43:51.936984: Successfully ran: "cactus_analyseAssembly HG03486.2.sanitized.fa" in 0.9625 seconds and 153.9 Mi memory
2023-07-05 13:43:51.946641: Successfully ran: "cactus_analyseAssembly HG00735.2.sanitized.fa" in 0.9799 seconds and 153.9 Mi memory
2023-07-05 13:43:51.960967: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 0.5762 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:43:51: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 12 Total-length: 38601751 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 6394218 Median-sequence-length: 1715929 Max-sequence-length: 9786296 Min-sequence-length: 188755

2023-07-05 13:43:52.008621: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/9512/57db/tmpqnzn4t3x/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p"
2023-07-05 13:43:52.018678: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/0501/1094/tmp15kwmklo/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p"
Got message from job at time 07-05-2023 13:43:52: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 13 Total-length: 132714776 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 13981897 Median-sequence-length: 6928599 Max-sequence-length: 36039407 Min-sequence-length: 317944

2023-07-05 13:43:52.035430: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4f9a/0eab/tmp81vzouyc/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p"
2023-07-05 13:43:52.045755: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/3547/d2f7/tmpacfub4hc/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p"
Got message from job at time 07-05-2023 13:43:52: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 6 Total-length: 134233317 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 73587105 Median-sequence-length: 11054209 Max-sequence-length: 73587105 Min-sequence-length: 2298923

2023-07-05 13:43:52.105290: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/d473/d7f1/tmpzn7spobi/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p"
2023-07-05 13:43:52.120048: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/85dd/b87d/tmp7s4rl0vc/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p"
Got message from job at time 07-05-2023 13:43:52: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 3 Total-length: 41487197 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12724280 Median-sequence-length: 12724280 Max-sequence-length: 19229610 Min-sequence-length: 9533307

2023-07-05 13:43:52.250871: Successfully ran: "cactus_analyseAssembly HG02717.1.sanitized.fa" in 0.9781 seconds and 153.9 Mi memory
2023-07-05 13:43:52.271627: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/d3c6/0f11/tmpz4o4jy1s/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p'" in 0.3471 seconds and 51.9 Mi memory
2023-07-05 13:43:52.273892: Running the command: "cactus_analyseAssembly HG02486.2.sanitized.fa"
Got message from job at time 07-05-2023 13:43:52: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 3 Total-length: 36224026 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12770583 Median-sequence-length: 12770583 Max-sequence-length: 14221802 Min-sequence-length: 9231641

Got message from job at time 07-05-2023 13:43:52: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 4 Total-length: 36766838 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 10034070 Median-sequence-length: 10034070 Max-sequence-length: 16456319 Min-sequence-length: 3308281

2023-07-05 13:43:52.349434: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/0501/1094/tmp15kwmklo/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p'" in 0.3296 seconds and 17.9 Mi memory
2023-07-05 13:43:52.351469: Running the command: "cactus_analyseAssembly NA20129.2.sanitized.fa"
2023-07-05 13:43:52.361553: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4f9a/0eab/tmp81vzouyc/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p'" in 0.325 seconds and 19.4 Mi memory
2023-07-05 13:43:52.363620: Running the command: "cactus_analyseAssembly HG03486.2.sanitized.fa"
2023-07-05 13:43:52.374987: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/9512/57db/tmpqnzn4t3x/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p'" in 0.3652 seconds and 17.9 Mi memory
2023-07-05 13:43:52.377349: Running the command: "cactus_analyseAssembly HG02886.1.sanitized.fa"
2023-07-05 13:43:52.403127: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/3547/d2f7/tmpacfub4hc/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p'" in 0.3563 seconds and 17.9 Mi memory
2023-07-05 13:43:52.405022: Running the command: "cactus_analyseAssembly HG02572.2.sanitized.fa"
2023-07-05 13:43:52.443197: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/85dd/b87d/tmp7s4rl0vc/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p'" in 0.322 seconds and 17.8 Mi memory
2023-07-05 13:43:52.445349: Running the command: "cactus_analyseAssembly HG01978.2.sanitized.fa"
Got message from job at time 07-05-2023 13:43:52: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 7 Total-length: 133630508 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40448663 Median-sequence-length: 7416629 Max-sequence-length: 63348444 Min-sequence-length: 313191

2023-07-05 13:43:52.477459: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/6cc2/91e5/tmp48xlksck/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p"
Got message from job at time 07-05-2023 13:43:52: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 9 Total-length: 133623922 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35998411 Median-sequence-length: 4830885 Max-sequence-length: 44849285 Min-sequence-length: 56039

2023-07-05 13:43:52.503806: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/d473/d7f1/tmpzn7spobi/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p'" in 0.3974 seconds and 19.2 Mi memory
2023-07-05 13:43:52.507616: Running the command: "cactus_analyseAssembly HG01978.1.sanitized.fa"
Got message from job at time 07-05-2023 13:43:52: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 7 Total-length: 35672944 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 10885620 Median-sequence-length: 3277487 Max-sequence-length: 12748290 Min-sequence-length: 162987

2023-07-05 13:43:52.541661: Successfully ran: "cactus_analyseAssembly HG02486.2.sanitized.fa" in 0.2669 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:43:52: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 9 Total-length: 132711738 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35059659 Median-sequence-length: 4564505 Max-sequence-length: 65375635 Min-sequence-length: 472108

Got message from job at time 07-05-2023 13:43:52: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 10 Total-length: 38126623 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 8406496 Median-sequence-length: 4367645 Max-sequence-length: 10866130 Min-sequence-length: 161779

2023-07-05 13:43:52.593031: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 0.2407 seconds and 17.8 Mi memory
2023-07-05 13:43:52.608759: Successfully ran: "cactus_analyseAssembly HG03486.2.sanitized.fa" in 0.2442 seconds and 19.4 Mi memory
2023-07-05 13:43:52.620717: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/171f/6ede/tmp9nals5ak/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p"
Got message from job at time 07-05-2023 13:43:52: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 4 Total-length: 38150621 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 11220972 Median-sequence-length: 11220972 Max-sequence-length: 16066626 Min-sequence-length: 1540314

2023-07-05 13:43:52.651398: Successfully ran: "cactus_analyseAssembly HG02886.1.sanitized.fa" in 0.2732 seconds and 17.8 Mi memory
2023-07-05 13:43:52.672220: Successfully ran: "cactus_analyseAssembly HG02572.2.sanitized.fa" in 0.2664 seconds and 17.8 Mi memory
Got message from job at time 07-05-2023 13:43:52: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 7 Total-length: 66343653 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36388763 Median-sequence-length: 783892 Max-sequence-length: 36388763 Min-sequence-length: 262353

Got message from job at time 07-05-2023 13:43:52: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 8 Total-length: 66430244 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24390831 Median-sequence-length: 882122 Max-sequence-length: 27349429 Min-sequence-length: 25282

2023-07-05 13:43:52.685662: Successfully ran: "cactus_analyseAssembly HG01978.2.sanitized.fa" in 0.2395 seconds and 17.8 Mi memory
Got message from job at time 07-05-2023 13:43:52: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 4 Total-length: 64926252 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34759261 Median-sequence-length: 28858896 Max-sequence-length: 34759261 Min-sequence-length: 602219

Got message from job at time 07-05-2023 13:43:52: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 13 Total-length: 66244667 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39826869 Median-sequence-length: 886612 Max-sequence-length: 39826869 Min-sequence-length: 73214

Got message from job at time 07-05-2023 13:43:52: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 6 Total-length: 66260150 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36213663 Median-sequence-length: 1036810 Max-sequence-length: 36213663 Min-sequence-length: 341170

2023-07-05 13:43:52.809637: Successfully ran: "cactus_analyseAssembly HG01978.1.sanitized.fa" in 0.3009 seconds and 19.1 Mi memory
2023-07-05 13:43:52.836690: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/a84b/034f/tmpkk93ksmd/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p"
2023-07-05 13:43:52.872522: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/283f/4a57/tmprn4jssa2/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p"
2023-07-05 13:43:53.078518: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/fbc0/63ae/tmpz7k7ak4o/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
2023-07-05 13:43:53.078685: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/5302/a7c0/tmpdmsgu6cm/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p"
2023-07-05 13:43:53.144941: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/579c/b3df/tmps08i8oyj/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p"
Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 6 Total-length: 66626938 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33574639 Median-sequence-length: 1303636 Max-sequence-length: 33574639 Min-sequence-length: 28026

Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 3 Total-length: 134677671 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 124802163 Median-sequence-length: 9550458 Max-sequence-length: 124802163 Min-sequence-length: 325050

Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 7 Total-length: 134278834 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 81568605 Median-sequence-length: 6165684 Max-sequence-length: 81568605 Min-sequence-length: 29509

Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 4 Total-length: 134961352 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 88014962 Median-sequence-length: 37050873 Max-sequence-length: 88014962 Min-sequence-length: 30911

Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 4 Total-length: 66072947 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16920575 Median-sequence-length: 16920575 Max-sequence-length: 32067814 Min-sequence-length: 2179651

Got message from job at time 07-05-2023 13:43:53: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 13753 Total-length: 67217516 Proportion-repeat-masked: 0.007437 ProportionNs: 0.007437 Total-Ns: 499910 N50: 69720 Median-sequence-length: 99 Max-sequence-length: 2169418 Min-sequence-length: 1

Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 4 Total-length: 89120133 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 88590296 Median-sequence-length: 424603 Max-sequence-length: 88590296 Min-sequence-length: 25195

Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 5 Total-length: 93151371 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 53867260 Median-sequence-length: 6551987 Max-sequence-length: 53867260 Min-sequence-length: 36455

2023-07-05 13:43:53.333923: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/c2b8/c472/tmpshv3hu0u/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 7 Total-length: 38361663 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30630410 Median-sequence-length: 518105 Max-sequence-length: 30630410 Min-sequence-length: 18226

2023-07-05 13:43:53.359140: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/6cc2/91e5/tmp48xlksck/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p'" in 0.8802 seconds and 17.9 Mi memory
2023-07-05 13:43:53.360215: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/a84b/034f/tmpkk93ksmd/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p'" in 0.5222 seconds and 51.9 Mi memory
2023-07-05 13:43:53.362075: Running the command: "cactus_analyseAssembly HG02630.2.sanitized.fa"
2023-07-05 13:43:53.362718: Running the command: "cactus_analyseAssembly HG03492.1.sanitized.fa"
Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 5 Total-length: 90013941 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52821887 Median-sequence-length: 17520463 Max-sequence-length: 52821887 Min-sequence-length: 608712

Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 5 Total-length: 67532646 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28412038 Median-sequence-length: 6228669 Max-sequence-length: 31652186 Min-sequence-length: 131779

Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 3 Total-length: 96519388 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 79542717 Median-sequence-length: 16822358 Max-sequence-length: 79542717 Min-sequence-length: 154313

2023-07-05 13:43:53.384389: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/171f/6ede/tmp9nals5ak/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p'" in 0.7622 seconds and 51.9 Mi memory
2023-07-05 13:43:53.387532: Running the command: "cactus_analyseAssembly HG02145.2.sanitized.fa"
Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 5 Total-length: 42569714 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26052456 Median-sequence-length: 3719261 Max-sequence-length: 26052456 Min-sequence-length: 23061

Got message from job at time 07-05-2023 13:43:53: Assembly stats for NA20129.1: Input-sample: NA20129.1.sanitized.fa Total-sequences: 6 Total-length: 64101573 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27387255 Median-sequence-length: 4582364 Max-sequence-length: 30827938 Min-sequence-length: 72974

Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 7 Total-length: 66294986 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33376998 Median-sequence-length: 4846892 Max-sequence-length: 33376998 Min-sequence-length: 623970

Got message from job at time 07-05-2023 13:43:53: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 50818468 Proportion-repeat-masked: 0.270502 ProportionNs: 0.270502 Total-Ns: 13746483 N50: 50818468 Median-sequence-length: 50818468 Max-sequence-length: 50818468 Min-sequence-length: 50818468

Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 6 Total-length: 100090291 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 53128832 Median-sequence-length: 15737968 Max-sequence-length: 53128832 Min-sequence-length: 44413

2023-07-05 13:43:53.507855: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/658f/d363/tmp3p_fxik1/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p"
Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 10 Total-length: 64042409 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16606347 Median-sequence-length: 5058707 Max-sequence-length: 18769771 Min-sequence-length: 58412

2023-07-05 13:43:53.554271: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/0a4d/4d14/tmpitcc5rg0/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p"
Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 17 Total-length: 67147810 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18216135 Median-sequence-length: 132776 Max-sequence-length: 20257892 Min-sequence-length: 26138

Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 16 Total-length: 133211710 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22121652 Median-sequence-length: 3019135 Max-sequence-length: 31786578 Min-sequence-length: 22907

2023-07-05 13:43:53.586760: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/e4ef/c7c6/tmpudy208lz/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p"
Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG03453.1: Input-sample: HG03453.1.sanitized.fa Total-sequences: 5 Total-length: 43090342 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12494909 Median-sequence-length: 12100336 Max-sequence-length: 13112519 Min-sequence-length: 997912

2023-07-05 13:43:53.638096: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/283f/4a57/tmprn4jssa2/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p'" in 0.7641 seconds and 51.9 Mi memory
2023-07-05 13:43:53.642042: Running the command: "cactus_analyseAssembly HG02257.2.sanitized.fa"
2023-07-05 13:43:53.649189: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 0.2862 seconds and 51.8 Mi memory
Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 9 Total-length: 130545205 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 83367964 Median-sequence-length: 4122662 Max-sequence-length: 83367964 Min-sequence-length: 98853

Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 8 Total-length: 133213688 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 79583249 Median-sequence-length: 6479613 Max-sequence-length: 79583249 Min-sequence-length: 32608

Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 4 Total-length: 134718776 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 128228317 Median-sequence-length: 3015624 Max-sequence-length: 128228317 Min-sequence-length: 830009

Got message from job at time 07-05-2023 13:43:53: Assembly stats for NA18906.1: Input-sample: NA18906.1.sanitized.fa Total-sequences: 2 Total-length: 46578601 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 46549036 Median-sequence-length: 46549036 Max-sequence-length: 46549036 Min-sequence-length: 29565

Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 8 Total-length: 133466963 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 96251378 Median-sequence-length: 3389463 Max-sequence-length: 96251378 Min-sequence-length: 314840

Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 9 Total-length: 133944489 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36226496 Median-sequence-length: 4339864 Max-sequence-length: 65591397 Min-sequence-length: 154015

2023-07-05 13:43:53.799610: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/cfb3/d4eb/tmpk1adg79x/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p"
2023-07-05 13:43:53.819116: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/fbc0/63ae/tmpz7k7ak4o/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p'" in 0.7391 seconds and 64.3 Mi memory
2023-07-05 13:43:53.823056: Running the command: "cactus_analyseAssembly CHM13.sanitized.fa"
2023-07-05 13:43:53.839645: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/5302/a7c0/tmpdmsgu6cm/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p'" in 0.7596 seconds and 51.9 Mi memory
2023-07-05 13:43:53.842609: Running the command: "cactus_analyseAssembly HG01952.1.sanitized.fa"
Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG00741.1: Input-sample: HG00741.1.sanitized.fa Total-sequences: 8 Total-length: 133541772 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 70269590 Median-sequence-length: 7893859 Max-sequence-length: 70269590 Min-sequence-length: 62154

Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 2 Total-length: 44298681 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31568296 Median-sequence-length: 31568296 Max-sequence-length: 31568296 Min-sequence-length: 12730385

2023-07-05 13:43:53.905443: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 0.5418 seconds and 17.8 Mi memory
Got message from job at time 07-05-2023 13:43:53: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 10 Total-length: 65556816 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 13832818 Median-sequence-length: 5266403 Max-sequence-length: 24694520 Min-sequence-length: 604614

2023-07-05 13:43:53.941083: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/579c/b3df/tmps08i8oyj/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p'" in 0.7947 seconds and 51.9 Mi memory
2023-07-05 13:43:53.943947: Running the command: "cactus_analyseAssembly HG01123.1.sanitized.fa"
Got message from job at time 07-05-2023 13:43:53: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 3 Total-length: 133358144 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 126880516 Median-sequence-length: 5355213 Max-sequence-length: 126880516 Min-sequence-length: 1122415

2023-07-05 13:43:53.966168: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/658f/d363/tmp3p_fxik1/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p'" in 0.4569 seconds and 51.9 Mi memory
2023-07-05 13:43:53.968251: Running the command: "cactus_analyseAssembly HG00735.1.sanitized.fa"
2023-07-05 13:43:53.991991: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/0a4d/4d14/tmpitcc5rg0/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p'" in 0.4364 seconds and 17.9 Mi memory
2023-07-05 13:43:53.994003: Running the command: "cactus_analyseAssembly HG01243.1.sanitized.fa"
Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG03540.1: Input-sample: HG03540.1.sanitized.fa Total-sequences: 6 Total-length: 62304512 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33079082 Median-sequence-length: 10187032 Max-sequence-length: 33079082 Min-sequence-length: 876720

2023-07-05 13:43:54.002071: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/e4ef/c7c6/tmpudy208lz/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p'" in 0.4139 seconds and 19.4 Mi memory
2023-07-05 13:43:54.004029: Running the command: "cactus_analyseAssembly HG01071.1.sanitized.fa"
Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 4 Total-length: 133296359 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 87248814 Median-sequence-length: 36163724 Max-sequence-length: 87248814 Min-sequence-length: 326668

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 4 Total-length: 45262142 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32519199 Median-sequence-length: 8370842 Max-sequence-length: 32519199 Min-sequence-length: 903715

2023-07-05 13:43:54.111196: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/c2b8/c472/tmpshv3hu0u/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 0.7758 seconds and 153.9 Mi memory
2023-07-05 13:43:54.114775: Running the command: "cactus_analyseAssembly GRCh38.sanitized.fa"
Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 8 Total-length: 64942766 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33236224 Median-sequence-length: 3193020 Max-sequence-length: 33236224 Min-sequence-length: 262489

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 7 Total-length: 65880577 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28038366 Median-sequence-length: 882540 Max-sequence-length: 32003982 Min-sequence-length: 25584

2023-07-05 13:43:54.173852: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 0.7854 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:43:54: Assembly stats for NA20129.1: Input-sample: NA20129.1.sanitized.fa Total-sequences: 13 Total-length: 134210735 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18634460 Median-sequence-length: 4887077 Max-sequence-length: 38288414 Min-sequence-length: 312572

2023-07-05 13:43:54.200937: Successfully ran: "cactus_analyseAssembly HG02257.2.sanitized.fa" in 0.5579 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 6 Total-length: 65234989 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36301544 Median-sequence-length: 11846758 Max-sequence-length: 36301544 Min-sequence-length: 800241

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 5 Total-length: 64616008 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36232212 Median-sequence-length: 12179613 Max-sequence-length: 36232212 Min-sequence-length: 263089

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 9 Total-length: 134373271 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 77699068 Median-sequence-length: 2323670 Max-sequence-length: 77699068 Min-sequence-length: 29462

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 5 Total-length: 65942506 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27889430 Median-sequence-length: 3391656 Max-sequence-length: 32546153 Min-sequence-length: 795967

Got message from job at time 07-05-2023 13:43:54: Assembly stats for NA18906.1: Input-sample: NA18906.1.sanitized.fa Total-sequences: 3 Total-length: 66065823 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33913634 Median-sequence-length: 30836000 Max-sequence-length: 33913634 Min-sequence-length: 1316189

2023-07-05 13:43:54.299116: Successfully ran: "cactus_analyseAssembly HG01071.1.sanitized.fa" in 0.2942 seconds and 19.4 Mi memory
2023-07-05 13:43:54.301951: Successfully ran: "cactus_analyseAssembly HG01243.1.sanitized.fa" in 0.3071 seconds and 17.8 Mi memory
2023-07-05 13:43:54.313581: Successfully ran: "cactus_analyseAssembly HG00735.1.sanitized.fa" in 0.3444 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:43:54: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 133275309 Proportion-repeat-masked: 0.001032 ProportionNs: 0.001032 Total-Ns: 137490 N50: 133275309 Median-sequence-length: 133275309 Max-sequence-length: 133275309 Min-sequence-length: 133275309

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 6 Total-length: 65423270 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33410047 Median-sequence-length: 2828557 Max-sequence-length: 33410047 Min-sequence-length: 604200

2023-07-05 13:43:54.390984: Successfully ran: "cactus_analyseAssembly CHM13.sanitized.fa" in 0.5669 seconds and 64.0 Mi memory
2023-07-05 13:43:54.396988: Successfully ran: "cactus_analyseAssembly HG01952.1.sanitized.fa" in 0.5534 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG01071.1: Input-sample: HG01071.1.sanitized.fa Total-sequences: 10 Total-length: 66102918 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19016979 Median-sequence-length: 863002 Max-sequence-length: 25314272 Min-sequence-length: 117536

Got message from job at time 07-05-2023 13:43:54: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 5 Total-length: 134633927 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 84664908 Median-sequence-length: 5200228 Max-sequence-length: 84664908 Min-sequence-length: 86861

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 6 Total-length: 66764637 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20252043 Median-sequence-length: 10584571 Max-sequence-length: 29815074 Min-sequence-length: 1309375

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 7 Total-length: 64802504 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32561836 Median-sequence-length: 2978092 Max-sequence-length: 32561836 Min-sequence-length: 26816

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 8 Total-length: 66056396 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 63917904 Median-sequence-length: 341543 Max-sequence-length: 63917904 Min-sequence-length: 21836

2023-07-05 13:43:54.497200: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/cfb3/d4eb/tmpk1adg79x/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 0.6964 seconds and 20.2 Mi memory
Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 5 Total-length: 65457853 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14908115 Median-sequence-length: 13833322 Max-sequence-length: 30853781 Min-sequence-length: 1311037

2023-07-05 13:43:54.500395: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
2023-07-05 13:43:54.504653: Successfully ran: "cactus_analyseAssembly HG01123.1.sanitized.fa" in 0.5597 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 6 Total-length: 65501993 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33356021 Median-sequence-length: 4124543 Max-sequence-length: 33356021 Min-sequence-length: 28201

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 3 Total-length: 64385645 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36822734 Median-sequence-length: 26709283 Max-sequence-length: 36822734 Min-sequence-length: 853628

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 11 Total-length: 66747263 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14007200 Median-sequence-length: 1122905 Max-sequence-length: 22953697 Min-sequence-length: 263764

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 12 Total-length: 65019006 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17513967 Median-sequence-length: 759285 Max-sequence-length: 18724542 Min-sequence-length: 39124

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 3 Total-length: 67383668 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 38536110 Median-sequence-length: 27531548 Max-sequence-length: 38536110 Min-sequence-length: 1316010

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG00741.1: Input-sample: HG00741.1.sanitized.fa Total-sequences: 3 Total-length: 37234521 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20769567 Median-sequence-length: 8913664 Max-sequence-length: 20769567 Min-sequence-length: 7551290

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 4 Total-length: 35869836 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19202296 Median-sequence-length: 12813402 Max-sequence-length: 19202296 Min-sequence-length: 135229

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 6 Total-length: 64543265 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14814901 Median-sequence-length: 13432813 Max-sequence-length: 22507377 Min-sequence-length: 270936

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 9 Total-length: 43214562 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12599196 Median-sequence-length: 485191 Max-sequence-length: 13899404 Min-sequence-length: 17167

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 5 Total-length: 64048024 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22116926 Median-sequence-length: 12730291 Max-sequence-length: 27115837 Min-sequence-length: 788961

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 6 Total-length: 66669341 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 60193972 Median-sequence-length: 829710 Max-sequence-length: 60193972 Min-sequence-length: 257986

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 6 Total-length: 67791293 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18374072 Median-sequence-length: 14905706 Max-sequence-length: 30844855 Min-sequence-length: 261837

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 8 Total-length: 63798650 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24229381 Median-sequence-length: 1982398 Max-sequence-length: 30835129 Min-sequence-length: 31736

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 7 Total-length: 66187086 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26990390 Median-sequence-length: 2457882 Max-sequence-length: 30822866 Min-sequence-length: 262270

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 6 Total-length: 89445642 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 53380058 Median-sequence-length: 438308 Max-sequence-length: 53380058 Min-sequence-length: 26989

2023-07-05 13:43:54.715232: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 0.5994 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:43:54: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 5 Total-length: 64283296 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27345623 Median-sequence-length: 5943350 Max-sequence-length: 29691148 Min-sequence-length: 604854

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 4 Total-length: 66930953 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29256583 Median-sequence-length: 29256583 Max-sequence-length: 30843919 Min-sequence-length: 1311233

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 5 Total-length: 66539646 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 63733432 Median-sequence-length: 871435 Max-sequence-length: 63733432 Min-sequence-length: 261330

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 7 Total-length: 65335377 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35943817 Median-sequence-length: 2592135 Max-sequence-length: 35943817 Min-sequence-length: 606029

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 8 Total-length: 66961824 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19798602 Median-sequence-length: 1748128 Max-sequence-length: 29803367 Min-sequence-length: 21941

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 7 Total-length: 65681768 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25901396 Median-sequence-length: 1059496 Max-sequence-length: 32679669 Min-sequence-length: 259156

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 6 Total-length: 65189631 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33180553 Median-sequence-length: 1700513 Max-sequence-length: 33180553 Min-sequence-length: 50468

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 6 Total-length: 66438116 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14879256 Median-sequence-length: 13713805 Max-sequence-length: 30829293 Min-sequence-length: 1307440

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 6 Total-length: 65459648 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37106834 Median-sequence-length: 903400 Max-sequence-length: 37106834 Min-sequence-length: 264118

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 2 Total-length: 67254725 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37144834 Median-sequence-length: 37144834 Max-sequence-length: 37144834 Min-sequence-length: 30109891

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 11 Total-length: 67477979 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 11802780 Median-sequence-length: 862999 Max-sequence-length: 18216950 Min-sequence-length: 17419

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 7 Total-length: 66414849 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25881888 Median-sequence-length: 2877688 Max-sequence-length: 30841024 Min-sequence-length: 612643

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG03453.1: Input-sample: HG03453.1.sanitized.fa Total-sequences: 5 Total-length: 67751432 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19027621 Median-sequence-length: 14887045 Max-sequence-length: 32518727 Min-sequence-length: 23331

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 5 Total-length: 66251353 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33699162 Median-sequence-length: 760312 Max-sequence-length: 33699162 Min-sequence-length: 606114

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 2 Total-length: 67277629 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 65960538 Median-sequence-length: 65960538 Max-sequence-length: 65960538 Min-sequence-length: 1317091

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 5 Total-length: 66475818 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 64526777 Median-sequence-length: 638399 Max-sequence-length: 64526777 Min-sequence-length: 261915

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 4 Total-length: 64187281 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36417718 Median-sequence-length: 14879940 Max-sequence-length: 36417718 Min-sequence-length: 1325868

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG03540.1: Input-sample: HG03540.1.sanitized.fa Total-sequences: 5 Total-length: 38030142 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12760555 Median-sequence-length: 8026387 Max-sequence-length: 16229394 Min-sequence-length: 28185

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG02622.1: Input-sample: HG02622.1.sanitized.fa Total-sequences: 3 Total-length: 43125930 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30299526 Median-sequence-length: 8435438 Max-sequence-length: 30299526 Min-sequence-length: 4390966

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 10 Total-length: 71960923 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27190230 Median-sequence-length: 2252036 Max-sequence-length: 28371254 Min-sequence-length: 130892

Got message from job at time 07-05-2023 13:43:54: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 4 Total-length: 37662383 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12750172 Median-sequence-length: 12750172 Max-sequence-length: 14529805 Min-sequence-length: 1980193

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 2 Total-length: 36549013 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23795203 Median-sequence-length: 23795203 Max-sequence-length: 23795203 Min-sequence-length: 12753810

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 3 Total-length: 32078762 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28587904 Median-sequence-length: 2457960 Max-sequence-length: 28587904 Min-sequence-length: 1032898

2023-07-05 13:43:55.044613: Successfully ran: "cactus_analyseAssembly HG02080.2.sanitized.fa" in 0.5433 seconds and 20.2 Mi memory
Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 3 Total-length: 36443004 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19442589 Median-sequence-length: 12743994 Max-sequence-length: 19442589 Min-sequence-length: 4256421

Got message from job at time 07-05-2023 13:43:55: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 51324926 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51324926 Median-sequence-length: 51324926 Max-sequence-length: 51324926 Min-sequence-length: 51324926

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 3 Total-length: 37490065 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12765194 Median-sequence-length: 12765194 Max-sequence-length: 15255226 Min-sequence-length: 9469645

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 1 Total-length: 38070857 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 38070857 Median-sequence-length: 38070857 Max-sequence-length: 38070857 Min-sequence-length: 38070857

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 7 Total-length: 63967202 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24067012 Median-sequence-length: 1142068 Max-sequence-length: 26154615 Min-sequence-length: 63389

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 7 Total-length: 36657228 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19414889 Median-sequence-length: 544084 Max-sequence-length: 19414889 Min-sequence-length: 30200

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 5 Total-length: 66825121 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18301774 Median-sequence-length: 14897798 Max-sequence-length: 32320904 Min-sequence-length: 606024

Got message from job at time 07-05-2023 13:43:55: Assembly stats for NA20129.1: Input-sample: NA20129.1.sanitized.fa Total-sequences: 6 Total-length: 35777071 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 7381235 Median-sequence-length: 5591983 Max-sequence-length: 12752995 Min-sequence-length: 2250000

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 2 Total-length: 44286267 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32170210 Median-sequence-length: 32170210 Max-sequence-length: 32170210 Min-sequence-length: 12116057

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 7 Total-length: 64551433 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24993202 Median-sequence-length: 797998 Max-sequence-length: 27231307 Min-sequence-length: 454377

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 3 Total-length: 45338706 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31622375 Median-sequence-length: 12766462 Max-sequence-length: 31622375 Min-sequence-length: 949869

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 8 Total-length: 73736663 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39059798 Median-sequence-length: 802660 Max-sequence-length: 39059798 Min-sequence-length: 195232

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 6 Total-length: 36053969 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22632261 Median-sequence-length: 551076 Max-sequence-length: 22632261 Min-sequence-length: 46442

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 4 Total-length: 65860947 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36791098 Median-sequence-length: 27768069 Max-sequence-length: 36791098 Min-sequence-length: 603185

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 4 Total-length: 38815199 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 21327943 Median-sequence-length: 12754928 Max-sequence-length: 21327943 Min-sequence-length: 1012570

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 7 Total-length: 36372653 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 6130419 Median-sequence-length: 4222867 Max-sequence-length: 15545796 Min-sequence-length: 158745

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 3 Total-length: 38777392 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26054193 Median-sequence-length: 8768713 Max-sequence-length: 26054193 Min-sequence-length: 3954486

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 2 Total-length: 35623863 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22880271 Median-sequence-length: 22880271 Max-sequence-length: 22880271 Min-sequence-length: 12743592

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 3 Total-length: 35556261 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22753433 Median-sequence-length: 12760286 Max-sequence-length: 22753433 Min-sequence-length: 42542

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 3 Total-length: 36680510 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23880348 Median-sequence-length: 12772776 Max-sequence-length: 23880348 Min-sequence-length: 27386

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 4 Total-length: 37896531 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19486860 Median-sequence-length: 8379880 Max-sequence-length: 19486860 Min-sequence-length: 4372474

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG02622.1: Input-sample: HG02622.1.sanitized.fa Total-sequences: 3 Total-length: 67529087 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 65426627 Median-sequence-length: 1312153 Max-sequence-length: 65426627 Min-sequence-length: 790307

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 5 Total-length: 81978970 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41880656 Median-sequence-length: 13150551 Max-sequence-length: 41880656 Min-sequence-length: 2565435

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 5 Total-length: 67262740 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28860400 Median-sequence-length: 3646881 Max-sequence-length: 33453707 Min-sequence-length: 605010

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 7 Total-length: 62325465 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32637625 Median-sequence-length: 706452 Max-sequence-length: 32637625 Min-sequence-length: 243531

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 7 Total-length: 65800750 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24068595 Median-sequence-length: 4044461 Max-sequence-length: 24916081 Min-sequence-length: 93796

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 4 Total-length: 37376419 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 21911965 Median-sequence-length: 8899163 Max-sequence-length: 21911965 Min-sequence-length: 2753207

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 24 Total-length: 41655415 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 3897428 Median-sequence-length: 887510 Max-sequence-length: 9791112 Min-sequence-length: 54329

Got message from job at time 07-05-2023 13:43:55: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 4 Total-length: 37372000 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19393820 Median-sequence-length: 12748249 Max-sequence-length: 19393820 Min-sequence-length: 161910

Got message from job at time 07-05-2023 13:43:56: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 6 Total-length: 37151771 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12731963 Median-sequence-length: 4906172 Max-sequence-length: 16829539 Min-sequence-length: 83534

Got message from job at time 07-05-2023 13:43:56: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 3 Total-length: 36102015 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12711659 Median-sequence-length: 12711659 Max-sequence-length: 16744835 Min-sequence-length: 6645521

Got message from job at time 07-05-2023 13:43:56: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 5 Total-length: 42368708 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 10091895 Median-sequence-length: 8362848 Max-sequence-length: 16977826 Min-sequence-length: 2553456

Got message from job at time 07-05-2023 13:43:56: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 7 Total-length: 46364039 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14159559 Median-sequence-length: 138973 Max-sequence-length: 19012126 Min-sequence-length: 96321

Got message from job at time 07-05-2023 13:43:56: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 6 Total-length: 37305502 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19449683 Median-sequence-length: 4564406 Max-sequence-length: 19449683 Min-sequence-length: 190074

2023-07-05 13:43:57.020148: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d7b5/6994/tmp9bgm0ebs/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p"
2023-07-05 13:43:57.063404: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8b39/f016/tmpq2d2p068/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p"
2023-07-05 13:43:57.067212: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d107/f03d/tmp8hhusofj/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p"
2023-07-05 13:43:57.088153: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a74/0dae/tmprsyg15si/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p"
2023-07-05 13:43:57.811886: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/7f9e/1083/tmpc6or2ubm/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p"
2023-07-05 13:43:57.814179: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d7b5/6994/tmp9bgm0ebs/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p'" in 0.793 seconds and 51.9 Mi memory
2023-07-05 13:43:57.820779: Running the command: "cactus_analyseAssembly HG02572.2.sanitized.fa"
2023-07-05 13:43:57.824341: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/738c/9623/tmpjo8zsvks/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-05 13:43:57.895603: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d107/f03d/tmp8hhusofj/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p'" in 0.8274 seconds and 59.1 Mi memory
2023-07-05 13:43:57.900237: Running the command: "cactus_analyseAssembly HG03540.1.sanitized.fa"
2023-07-05 13:43:57.968497: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a74/0dae/tmprsyg15si/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p'" in 0.8795 seconds and 154.0 Mi memory
2023-07-05 13:43:57.972696: Running the command: "cactus_analyseAssembly HG01978.2.sanitized.fa"
2023-07-05 13:43:58.044431: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8b39/f016/tmpq2d2p068/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p'" in 0.9799 seconds and 154.0 Mi memory
2023-07-05 13:43:58.048918: Running the command: "cactus_analyseAssembly HG00741.2.sanitized.fa"
2023-07-05 13:43:58.166382: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/42d1/56df/tmpuxtxq5mc/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p"
2023-07-05 13:43:58.170448: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/95e5/cc4a/tmpv18jf87k/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p"
2023-07-05 13:43:58.180777: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/b46f/6687/tmpa78oda6w/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p"
2023-07-05 13:43:58.405945: Successfully ran: "cactus_analyseAssembly HG02572.2.sanitized.fa" in 0.5842 seconds and 51.9 Mi memory
2023-07-05 13:43:58.525951: Successfully ran: "cactus_analyseAssembly HG03540.1.sanitized.fa" in 0.6248 seconds and 59.1 Mi memory
2023-07-05 13:43:58.556143: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/7f9e/1083/tmpc6or2ubm/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p'" in 0.7431 seconds and 51.9 Mi memory
2023-07-05 13:43:58.559800: Running the command: "cactus_analyseAssembly HG02717.2.sanitized.fa"
2023-07-05 13:43:58.606509: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/738c/9623/tmpjo8zsvks/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p'" in 0.7812 seconds and 52.2 Mi memory
2023-07-05 13:43:58.608164: Successfully ran: "cactus_analyseAssembly HG01978.2.sanitized.fa" in 0.6345 seconds and 153.9 Mi memory
2023-07-05 13:43:58.609661: Running the command: "cactus_analyseAssembly HG00735.2.sanitized.fa"
Got message from job at time 07-05-2023 13:43:58: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 6 Total-length: 68187884 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36199104 Median-sequence-length: 865084 Max-sequence-length: 36199104 Min-sequence-length: 130419

Got message from job at time 07-05-2023 13:43:58: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 5 Total-length: 37828546 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12740963 Median-sequence-length: 5592831 Max-sequence-length: 14100033 Min-sequence-length: 1667446

2023-07-05 13:43:58.721437: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/24e8/eaa1/tmpr6svnb5c/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p"
2023-07-05 13:43:58.722570: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/b03c/a259/tmp14whxkwo/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p"
2023-07-05 13:43:58.722770: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/6492/80a8/tmpx1owire6/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-05 13:43:58.724289: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/b525/99aa/tmpi9t_3_t2/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p"
2023-07-05 13:43:58.729189: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/acba/878d/tmpm8d1lbe6/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p"
2023-07-05 13:43:58.729541: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/8b6a/abc6/tmpzgb4d7g8/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p"
2023-07-05 13:43:58.730514: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/dd3f/a7f7/tmp_7kv75qe/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p"
2023-07-05 13:43:58.730374: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/64d1/acee/tmpvycsv4r0/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p"
2023-07-05 13:43:58.764913: Successfully ran: "cactus_analyseAssembly HG00741.2.sanitized.fa" in 0.7152 seconds and 153.9 Mi memory
2023-07-05 13:43:58.769005: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/2a29/426f/tmpu3kod7mg/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p"
2023-07-05 13:43:58.794939: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/6200/3683/tmp4klszlt4/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p"
2023-07-05 13:43:58.795601: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/0bc4/20c3/tmpdgnfaf31/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p"
Got message from job at time 07-05-2023 13:43:58: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 8 Total-length: 37122281 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 10095040 Median-sequence-length: 4915962 Max-sequence-length: 12745448 Min-sequence-length: 54041

2023-07-05 13:43:58.893371: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/95e5/cc4a/tmpv18jf87k/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p'" in 0.7215 seconds and 51.9 Mi memory
2023-07-05 13:43:58.898994: Running the command: "cactus_analyseAssembly HG02818.1.sanitized.fa"
2023-07-05 13:43:58.901051: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/b46f/6687/tmpa78oda6w/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p'" in 0.7189 seconds and 51.9 Mi memory
2023-07-05 13:43:58.904671: Running the command: "cactus_analyseAssembly HG02148.1.sanitized.fa"
2023-07-05 13:43:58.925941: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/a1b5/4be0/tmp7rv2j88o/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p"
2023-07-05 13:43:58.926446: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/275d/36b3/tmp7l675ek9/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p"
2023-07-05 13:43:58.937841: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/214c/c67d/tmparats34y/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p"
Got message from job at time 07-05-2023 13:43:58: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 5 Total-length: 37651619 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 10428599 Median-sequence-length: 5481935 Max-sequence-length: 12748140 Min-sequence-length: 3719557

2023-07-05 13:43:59.077634: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/1ee3/7784/tmp6ef23p2n/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p"
2023-07-05 13:43:59.078143: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/bfdd/84ce/tmpbag9pq46/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p"
2023-07-05 13:43:59.086877: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/bfc2/d15f/tmpcxgwr_bw/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
2023-07-05 13:43:59.105401: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/2761/88bf/tmpoou2huh4/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p"
2023-07-05 13:43:59.108438: Successfully ran: "cactus_analyseAssembly HG02717.2.sanitized.fa" in 0.5477 seconds and 51.9 Mi memory
2023-07-05 13:43:59.148198: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/58d5/03bb/tmpg6n7otbh/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p"
2023-07-05 13:43:59.152396: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/3d7f/b15a/tmphh72zp38/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p"
2023-07-05 13:43:59.152587: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/6c25/f094/tmpn_e3wtxu/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p"
2023-07-05 13:43:59.156750: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/19ed/e534/tmpzlzks140/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p"
2023-07-05 13:43:59.159438: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/943a/4809/tmpye86l92q/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-05 13:43:59.161885: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/74b5/a98d/tmpq4zla7mp/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p"
2023-07-05 13:43:59.162405: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/edf2/9333/tmpkgud6aut/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p"
2023-07-05 13:43:59.186266: Successfully ran: "cactus_analyseAssembly HG00735.2.sanitized.fa" in 0.5757 seconds and 52.1 Mi memory
2023-07-05 13:43:59.189681: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/42d1/56df/tmpuxtxq5mc/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p'" in 1.0219 seconds and 51.9 Mi memory
2023-07-05 13:43:59.193737: Running the command: "cactus_analyseAssembly HG01891.1.sanitized.fa"
2023-07-05 13:43:59.260515: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/c079/fe57/tmpjnoii1sr/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p"
2023-07-05 13:43:59.438636: Successfully ran: "cactus_analyseAssembly HG02148.1.sanitized.fa" in 0.533 seconds and 51.9 Mi memory
2023-07-05 13:43:59.439466: Successfully ran: "cactus_analyseAssembly HG02818.1.sanitized.fa" in 0.5394 seconds and 51.9 Mi memory
2023-07-05 13:43:59.449536: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/dd3f/a7f7/tmp_7kv75qe/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p'" in 0.7178 seconds and 17.9 Mi memory
2023-07-05 13:43:59.453268: Running the command: "cactus_analyseAssembly HG02572.2.sanitized.fa"
2023-07-05 13:43:59.458295: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/b525/99aa/tmpi9t_3_t2/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p'" in 0.7321 seconds and 51.9 Mi memory
2023-07-05 13:43:59.461398: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/24e8/eaa1/tmpr6svnb5c/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p'" in 0.7387 seconds and 51.9 Mi memory
2023-07-05 13:43:59.462190: Running the command: "cactus_analyseAssembly HG02559.1.sanitized.fa"
2023-07-05 13:43:59.462475: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/acba/878d/tmpm8d1lbe6/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p'" in 0.7321 seconds and 51.9 Mi memory
2023-07-05 13:43:59.465957: Running the command: "cactus_analyseAssembly HG01071.1.sanitized.fa"
2023-07-05 13:43:59.466077: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/64d1/acee/tmpvycsv4r0/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p'" in 0.7341 seconds and 24.9 Mi memory
2023-07-05 13:43:59.467407: Running the command: "cactus_analyseAssembly HG00735.1.sanitized.fa"
2023-07-05 13:43:59.469776: Running the command: "cactus_analyseAssembly HG02145.2.sanitized.fa"
2023-07-05 13:43:59.473711: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/8b6a/abc6/tmpzgb4d7g8/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p'" in 0.7428 seconds and 56.3 Mi memory
2023-07-05 13:43:59.477787: Running the command: "cactus_analyseAssembly HG01952.1.sanitized.fa"
2023-07-05 13:43:59.483684: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/6492/80a8/tmpx1owire6/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p'" in 0.7596 seconds and 55.7 Mi memory
2023-07-05 13:43:59.487185: Running the command: "cactus_analyseAssembly HG00621.1.sanitized.fa"
2023-07-05 13:43:59.515922: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/b03c/a259/tmp14whxkwo/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p'" in 0.7922 seconds and 51.9 Mi memory
2023-07-05 13:43:59.519187: Running the command: "cactus_analyseAssembly HG01928.1.sanitized.fa"
2023-07-05 13:43:59.526129: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/2a29/426f/tmpu3kod7mg/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p'" in 0.756 seconds and 51.9 Mi memory
2023-07-05 13:43:59.530054: Running the command: "cactus_analyseAssembly NA21309.2.sanitized.fa"
2023-07-05 13:43:59.539970: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/0bc4/20c3/tmpdgnfaf31/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p'" in 0.743 seconds and 51.9 Mi memory
2023-07-05 13:43:59.543334: Running the command: "cactus_analyseAssembly HG02486.1.sanitized.fa"
2023-07-05 13:43:59.547846: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/6200/3683/tmp4klszlt4/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p'" in 0.7517 seconds and 22.3 Mi memory
2023-07-05 13:43:59.551710: Running the command: "cactus_analyseAssembly HG03098.1.sanitized.fa"
2023-07-05 13:43:59.649542: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/a1b5/4be0/tmp7rv2j88o/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p'" in 0.7221 seconds and 24.9 Mi memory
2023-07-05 13:43:59.652902: Running the command: "cactus_analyseAssembly HG03516.1.sanitized.fa"
2023-07-05 13:43:59.674553: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/275d/36b3/tmp7l675ek9/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p'" in 0.747 seconds and 51.9 Mi memory
2023-07-05 13:43:59.677842: Running the command: "cactus_analyseAssembly HG02257.1.sanitized.fa"
2023-07-05 13:43:59.729997: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/214c/c67d/tmparats34y/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p'" in 0.7912 seconds and 51.9 Mi memory
2023-07-05 13:43:59.733626: Running the command: "cactus_analyseAssembly HG01071.2.sanitized.fa"
2023-07-05 13:43:59.764272: Successfully ran: "cactus_analyseAssembly HG01891.1.sanitized.fa" in 0.5696 seconds and 51.9 Mi memory
2023-07-05 13:43:59.794394: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/bfdd/84ce/tmpbag9pq46/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p'" in 0.715 seconds and 19.2 Mi memory
2023-07-05 13:43:59.797831: Running the command: "cactus_analyseAssembly NA20129.2.sanitized.fa"
2023-07-05 13:43:59.989281: Successfully ran: "cactus_analyseAssembly HG02572.2.sanitized.fa" in 0.5351 seconds and 17.8 Mi memory
2023-07-05 13:44:00.011431: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 0.5408 seconds and 24.8 Mi memory
2023-07-05 13:44:00.021352: Successfully ran: "cactus_analyseAssembly HG02559.1.sanitized.fa" in 0.5581 seconds and 51.9 Mi memory
2023-07-05 13:44:00.027545: Successfully ran: "cactus_analyseAssembly HG01071.1.sanitized.fa" in 0.5609 seconds and 51.9 Mi memory
2023-07-05 13:44:00.030011: Successfully ran: "cactus_analyseAssembly HG00735.1.sanitized.fa" in 0.5616 seconds and 51.9 Mi memory
2023-07-05 13:44:00.046869: Successfully ran: "cactus_analyseAssembly HG01952.1.sanitized.fa" in 0.5681 seconds and 56.2 Mi memory
2023-07-05 13:44:00.059774: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 0.5717 seconds and 55.7 Mi memory
2023-07-05 13:44:00.086204: Successfully ran: "cactus_analyseAssembly HG01928.1.sanitized.fa" in 0.5661 seconds and 51.9 Mi memory
2023-07-05 13:44:00.096324: Successfully ran: "cactus_analyseAssembly HG03098.1.sanitized.fa" in 0.5437 seconds and 22.2 Mi memory
2023-07-05 13:44:00.100874: Successfully ran: "cactus_analyseAssembly NA21309.2.sanitized.fa" in 0.57 seconds and 51.9 Mi memory
2023-07-05 13:44:00.111575: Successfully ran: "cactus_analyseAssembly HG02486.1.sanitized.fa" in 0.5673 seconds and 51.9 Mi memory
2023-07-05 13:44:00.195362: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 0.5416 seconds and 24.8 Mi memory
2023-07-05 13:44:00.221729: Successfully ran: "cactus_analyseAssembly HG02257.1.sanitized.fa" in 0.5431 seconds and 51.9 Mi memory
2023-07-05 13:44:00.297774: Successfully ran: "cactus_analyseAssembly HG01071.2.sanitized.fa" in 0.5633 seconds and 51.9 Mi memory
2023-07-05 13:44:00.344433: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 0.5457 seconds and 19.1 Mi memory
Got message from job at time 07-05-2023 13:44:00: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 11 Total-length: 80329147 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 9618447 Median-sequence-length: 9044323 Max-sequence-length: 20095795 Min-sequence-length: 423271

2023-07-05 13:44:00.366573: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/bfc2/d15f/tmpcxgwr_bw/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p'" in 1.2784 seconds and 26.4 Mi memory
2023-07-05 13:44:00.372428: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/1ee3/7784/tmp6ef23p2n/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p'" in 1.2934 seconds and 51.9 Mi memory
2023-07-05 13:44:00.374299: Running the command: "cactus_analyseAssembly HG02109.2.sanitized.fa"
2023-07-05 13:44:00.379151: Running the command: "cactus_analyseAssembly HG03540.1.sanitized.fa"
Got message from job at time 07-05-2023 13:44:00: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 6 Total-length: 65876785 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35944394 Median-sequence-length: 698131 Max-sequence-length: 35944394 Min-sequence-length: 66374

2023-07-05 13:44:00.438699: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/3d7f/b15a/tmphh72zp38/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p'" in 1.285 seconds and 71.8 Mi memory
2023-07-05 13:44:00.444320: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/58d5/03bb/tmpg6n7otbh/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p'" in 1.2949 seconds and 56.2 Mi memory
2023-07-05 13:44:00.444957: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/edf2/9333/tmpkgud6aut/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p'" in 1.2817 seconds and 56.6 Mi memory
2023-07-05 13:44:00.447163: Running the command: "cactus_analyseAssembly HG01109.2.sanitized.fa"
2023-07-05 13:44:00.448370: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/2761/88bf/tmpoou2huh4/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p'" in 1.3417 seconds and 154.0 Mi memory
2023-07-05 13:44:00.451166: Running the command: "cactus_analyseAssembly HG02145.2.sanitized.fa"
2023-07-05 13:44:00.451665: Running the command: "cactus_analyseAssembly NA21309.2.sanitized.fa"
2023-07-05 13:44:00.453643: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/74b5/a98d/tmpq4zla7mp/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p'" in 1.2906 seconds and 51.9 Mi memory
2023-07-05 13:44:00.455501: Running the command: "cactus_analyseAssembly HG02486.2.sanitized.fa"
2023-07-05 13:44:00.460543: Running the command: "cactus_analyseAssembly HG01358.1.sanitized.fa"
2023-07-05 13:44:00.486519: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/943a/4809/tmpye86l92q/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p'" in 1.326 seconds and 51.9 Mi memory
2023-07-05 13:44:00.492971: Running the command: "cactus_analyseAssembly HG03516.2.sanitized.fa"
2023-07-05 13:44:00.500584: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/6c25/f094/tmpn_e3wtxu/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p'" in 1.3468 seconds and 66.4 Mi memory
2023-07-05 13:44:00.505793: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/19ed/e534/tmpzlzks140/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p'" in 1.3478 seconds and 56.5 Mi memory
2023-07-05 13:44:00.507136: Running the command: "cactus_analyseAssembly HG03579.2.sanitized.fa"
2023-07-05 13:44:00.512733: Running the command: "cactus_analyseAssembly HG02630.1.sanitized.fa"
2023-07-05 13:44:00.606223: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/c079/fe57/tmpjnoii1sr/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p'" in 1.3445 seconds and 154.0 Mi memory
2023-07-05 13:44:00.613451: Running the command: "cactus_analyseAssembly HG01952.2.sanitized.fa"
Got message from job at time 07-05-2023 13:44:00: Assembly stats for HG01071.1: Input-sample: HG01071.1.sanitized.fa Total-sequences: 5 Total-length: 41239625 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 8882922 Median-sequence-length: 8857590 Max-sequence-length: 19432124 Min-sequence-length: 152043

2023-07-05 13:44:01.290448: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 0.9152 seconds and 26.3 Mi memory
2023-07-05 13:44:01.318756: Successfully ran: "cactus_analyseAssembly HG03540.1.sanitized.fa" in 0.9387 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:44:01: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 3 Total-length: 83286596 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 48318733 Median-sequence-length: 24865760 Max-sequence-length: 48318733 Min-sequence-length: 10102103

Got message from job at time 07-05-2023 13:44:01: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 8 Total-length: 82490596 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52309953 Median-sequence-length: 4525408 Max-sequence-length: 52309953 Min-sequence-length: 30880

2023-07-05 13:44:01.384534: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 0.9326 seconds and 56.2 Mi memory
2023-07-05 13:44:01.386685: Successfully ran: "cactus_analyseAssembly NA21309.2.sanitized.fa" in 0.9342 seconds and 56.5 Mi memory
2023-07-05 13:44:01.387451: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 0.9394 seconds and 71.7 Mi memory
2023-07-05 13:44:01.397481: Successfully ran: "cactus_analyseAssembly HG01358.1.sanitized.fa" in 0.9361 seconds and 51.9 Mi memory
2023-07-05 13:44:01.428751: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 0.9349 seconds and 51.9 Mi memory
2023-07-05 13:44:01.439211: Successfully ran: "cactus_analyseAssembly HG02486.2.sanitized.fa" in 0.9829 seconds and 153.9 Mi memory
2023-07-05 13:44:01.447840: Successfully ran: "cactus_analyseAssembly HG03579.2.sanitized.fa" in 0.9398 seconds and 66.3 Mi memory
2023-07-05 13:44:01.467983: Successfully ran: "cactus_analyseAssembly HG02630.1.sanitized.fa" in 0.9543 seconds and 56.5 Mi memory
Got message from job at time 07-05-2023 13:44:01: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 7 Total-length: 83217564 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20541123 Median-sequence-length: 9331161 Max-sequence-length: 25752193 Min-sequence-length: 1254576

Got message from job at time 07-05-2023 13:44:01: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 9 Total-length: 83059003 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17891512 Median-sequence-length: 5495810 Max-sequence-length: 33304978 Min-sequence-length: 1202744

Got message from job at time 07-05-2023 13:44:01: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 4 Total-length: 37430454 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29234443 Median-sequence-length: 5343608 Max-sequence-length: 29234443 Min-sequence-length: 215104

2023-07-05 13:44:01.608920: Successfully ran: "cactus_analyseAssembly HG01952.2.sanitized.fa" in 0.9947 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:44:01: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 11 Total-length: 82033982 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14385704 Median-sequence-length: 2567148 Max-sequence-length: 37174961 Min-sequence-length: 38483

Got message from job at time 07-05-2023 13:44:01: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 6 Total-length: 83020954 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 67070230 Median-sequence-length: 1589822 Max-sequence-length: 67070230 Min-sequence-length: 113589

Got message from job at time 07-05-2023 13:44:01: Assembly stats for HG00741.1: Input-sample: HG00741.1.sanitized.fa Total-sequences: 9 Total-length: 83611196 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 56319618 Median-sequence-length: 988254 Max-sequence-length: 56319618 Min-sequence-length: 29957

Got message from job at time 07-05-2023 13:44:01: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 5 Total-length: 82115952 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52719901 Median-sequence-length: 5795013 Max-sequence-length: 52719901 Min-sequence-length: 243775

Got message from job at time 07-05-2023 13:44:01: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 5 Total-length: 39064078 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26066033 Median-sequence-length: 505986 Max-sequence-length: 26066033 Min-sequence-length: 21447

Got message from job at time 07-05-2023 13:44:01: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 6 Total-length: 40771636 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27421368 Median-sequence-length: 4373208 Max-sequence-length: 27421368 Min-sequence-length: 40765

Got message from job at time 07-05-2023 13:44:01: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 3 Total-length: 65806060 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 64482384 Median-sequence-length: 714033 Max-sequence-length: 64482384 Min-sequence-length: 609643

Got message from job at time 07-05-2023 13:44:01: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 25 Total-length: 83103944 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 9833616 Median-sequence-length: 1519569 Max-sequence-length: 16877595 Min-sequence-length: 24961

Got message from job at time 07-05-2023 13:44:01: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 8 Total-length: 82211408 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22334480 Median-sequence-length: 2738150 Max-sequence-length: 37843828 Min-sequence-length: 30426

Got message from job at time 07-05-2023 13:44:02: Assembly stats for HG00735.1: Input-sample: HG00735.1.sanitized.fa Total-sequences: 1 Total-length: 45896044 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 45896044 Median-sequence-length: 45896044 Max-sequence-length: 45896044 Min-sequence-length: 45896044

Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-evu87ba2 v1 with job batch system ID: 2653 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:44:02: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 1 Total-length: 38188807 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 38188807 Median-sequence-length: 38188807 Max-sequence-length: 38188807 Min-sequence-length: 38188807

Got message from job at time 07-05-2023 13:44:02: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 5 Total-length: 81420699 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 53216742 Median-sequence-length: 1980137 Max-sequence-length: 53216742 Min-sequence-length: 1200794

Got message from job at time 07-05-2023 13:44:02: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 7 Total-length: 83802710 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 21997118 Median-sequence-length: 7987064 Max-sequence-length: 25875249 Min-sequence-length: 143530

Got message from job at time 07-05-2023 13:44:02: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 3 Total-length: 42516851 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29801644 Median-sequence-length: 8340507 Max-sequence-length: 29801644 Min-sequence-length: 4374700

Got message from job at time 07-05-2023 13:44:02: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 5 Total-length: 81898373 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19683996 Median-sequence-length: 15162703 Max-sequence-length: 25082234 Min-sequence-length: 9391030

Got message from job at time 07-05-2023 13:44:02: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 4 Total-length: 83881811 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 57719438 Median-sequence-length: 25615208 Max-sequence-length: 57719438 Min-sequence-length: 181812

Got message from job at time 07-05-2023 13:44:02: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 7 Total-length: 43933147 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12746460 Median-sequence-length: 569088 Max-sequence-length: 19393166 Min-sequence-length: 28332

Got message from job at time 07-05-2023 13:44:02: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 7 Total-length: 37540464 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 5533553 Median-sequence-length: 5324442 Max-sequence-length: 8379220 Min-sequence-length: 2630410

Got message from job at time 07-05-2023 13:44:02: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 6 Total-length: 89332042 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 87558946 Median-sequence-length: 532145 Max-sequence-length: 87558946 Min-sequence-length: 24764

Got message from job at time 07-05-2023 13:44:02: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 83257441 Proportion-repeat-masked: 0.004050 ProportionNs: 0.004050 Total-Ns: 337225 N50: 83257441 Median-sequence-length: 83257441 Max-sequence-length: 83257441 Min-sequence-length: 83257441

Got message from job at time 07-05-2023 13:44:03: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 7 Total-length: 92545983 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23832522 Median-sequence-length: 12591790 Max-sequence-length: 38603376 Min-sequence-length: 28996

Got message from job at time 07-05-2023 13:44:03: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 4 Total-length: 38326446 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 8335323 Median-sequence-length: 8335323 Max-sequence-length: 17854976 Min-sequence-length: 4382980

Got message from job at time 07-05-2023 13:44:03: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 11 Total-length: 82134136 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 11626783 Median-sequence-length: 5355992 Max-sequence-length: 17665874 Min-sequence-length: 2638629

Got message from job at time 07-05-2023 13:44:03: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 8 Total-length: 95383475 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22069625 Median-sequence-length: 12840995 Max-sequence-length: 41145259 Min-sequence-length: 17395

2023-07-05 13:44:03.212341: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/b168/b6a8/tmpvm0leu7f/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p"
2023-07-05 13:44:03.212940: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/db08/95ea/tmpeboknbv3/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-05 13:44:03.216375: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/ba38/e616/tmpg86ovdoe/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p"
2023-07-05 13:44:03.217096: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/aa4e/05cf/tmp6kl492mf/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p"
2023-07-05 13:44:03.218211: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/3456/5ed9/tmpm8bitnkh/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
2023-07-05 13:44:03.218264: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/4165/f5c0/tmpltvgt56p/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p"
2023-07-05 13:44:03.218427: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/27df/5272/tmpxletxpii/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p"
2023-07-05 13:44:03.219140: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/b78e/f624/tmpj2qseu4t/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p"
2023-07-05 13:44:03.220008: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/be11/e14e/tmp4x72c6k5/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p"
Got message from job at time 07-05-2023 13:44:03: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 8 Total-length: 91894019 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 61832508 Median-sequence-length: 540844 Max-sequence-length: 61832508 Min-sequence-length: 39345

Got message from job at time 07-05-2023 13:44:03: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 7 Total-length: 82019909 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18757645 Median-sequence-length: 5935959 Max-sequence-length: 36105343 Min-sequence-length: 130548

Got message from job at time 07-05-2023 13:44:03: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 2 Total-length: 96255918 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 95400504 Median-sequence-length: 95400504 Max-sequence-length: 95400504 Min-sequence-length: 855414

Got message from job at time 07-05-2023 13:44:03: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 8 Total-length: 82418061 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18149518 Median-sequence-length: 5674920 Max-sequence-length: 38307954 Min-sequence-length: 60385

Got message from job at time 07-05-2023 13:44:03: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 4 Total-length: 37435094 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19572969 Median-sequence-length: 7658976 Max-sequence-length: 19572969 Min-sequence-length: 5063334

Got message from job at time 07-05-2023 13:44:03: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 10 Total-length: 81286550 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18963940 Median-sequence-length: 3933582 Max-sequence-length: 30263563 Min-sequence-length: 35797

Got message from job at time 07-05-2023 13:44:03: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 1 Total-length: 37777019 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37777019 Median-sequence-length: 37777019 Max-sequence-length: 37777019 Min-sequence-length: 37777019

Got message from job at time 07-05-2023 13:44:03: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 8 Total-length: 93813722 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 70732166 Median-sequence-length: 532604 Max-sequence-length: 70732166 Min-sequence-length: 30774

Got message from job at time 07-05-2023 13:44:03: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 8 Total-length: 37582958 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19276572 Median-sequence-length: 194089 Max-sequence-length: 19276572 Min-sequence-length: 29076

Got message from job at time 07-05-2023 13:44:03: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 4 Total-length: 91112265 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 72300968 Median-sequence-length: 18625673 Max-sequence-length: 72300968 Min-sequence-length: 62697

Got message from job at time 07-05-2023 13:44:03: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 4 Total-length: 37503692 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12803474 Median-sequence-length: 12803474 Max-sequence-length: 16849773 Min-sequence-length: 3545719

Got message from job at time 07-05-2023 13:44:03: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 4 Total-length: 38197415 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24849603 Median-sequence-length: 8780161 Max-sequence-length: 24849603 Min-sequence-length: 608253

Got message from job at time 07-05-2023 13:44:03: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 3 Total-length: 38916374 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23142025 Median-sequence-length: 15670882 Max-sequence-length: 23142025 Min-sequence-length: 103467

Got message from job at time 07-05-2023 13:44:03: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 4 Total-length: 37639498 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24888285 Median-sequence-length: 4537029 Max-sequence-length: 24888285 Min-sequence-length: 3837822

Got message from job at time 07-05-2023 13:44:03: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 5 Total-length: 42096415 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12740311 Median-sequence-length: 9934748 Max-sequence-length: 16815405 Min-sequence-length: 990797

Got message from job at time 07-05-2023 13:44:03: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 7 Total-length: 81904431 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12681899 Median-sequence-length: 10093220 Max-sequence-length: 35000392 Min-sequence-length: 122268

Got message from job at time 07-05-2023 13:44:03: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 9 Total-length: 38083637 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25025820 Median-sequence-length: 113874 Max-sequence-length: 25025820 Min-sequence-length: 29059

Got message from job at time 07-05-2023 13:44:03: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 5 Total-length: 89713800 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 56127021 Median-sequence-length: 5125067 Max-sequence-length: 56127021 Min-sequence-length: 417572

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 2 Total-length: 94409238 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54443609 Median-sequence-length: 54443609 Max-sequence-length: 54443609 Min-sequence-length: 39965629

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 5 Total-length: 43787049 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31081991 Median-sequence-length: 4212360 Max-sequence-length: 31081991 Min-sequence-length: 18280

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 8 Total-length: 88574537 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 86893377 Median-sequence-length: 396372 Max-sequence-length: 86893377 Min-sequence-length: 14336

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 2 Total-length: 45232929 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32367248 Median-sequence-length: 32367248 Max-sequence-length: 32367248 Min-sequence-length: 12865681

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG00741.1: Input-sample: HG00741.1.sanitized.fa Total-sequences: 9 Total-length: 65256546 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35049961 Median-sequence-length: 545567 Max-sequence-length: 35049961 Min-sequence-length: 57553

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 7 Total-length: 86718001 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 56137584 Median-sequence-length: 94135 Max-sequence-length: 56137584 Min-sequence-length: 47736

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 8 Total-length: 82988099 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18162744 Median-sequence-length: 5372113 Max-sequence-length: 37988374 Min-sequence-length: 175334

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 4 Total-length: 90921204 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 89772874 Median-sequence-length: 587012 Max-sequence-length: 89772874 Min-sequence-length: 219948

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 3 Total-length: 42236001 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37783395 Median-sequence-length: 4378513 Max-sequence-length: 37783395 Min-sequence-length: 74093

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG03453.1: Input-sample: HG03453.1.sanitized.fa Total-sequences: 5 Total-length: 83176037 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42655145 Median-sequence-length: 15199214 Max-sequence-length: 42655145 Min-sequence-length: 151486

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 6 Total-length: 37711750 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23466184 Median-sequence-length: 4359134 Max-sequence-length: 23466184 Min-sequence-length: 39221

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 2 Total-length: 37733991 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24982854 Median-sequence-length: 24982854 Max-sequence-length: 24982854 Min-sequence-length: 12751137

2023-07-05 13:44:04.393898: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/b168/b6a8/tmpvm0leu7f/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p'" in 1.1803 seconds and 56.8 Mi memory
2023-07-05 13:44:04.397661: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/4165/f5c0/tmpltvgt56p/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p'" in 1.1782 seconds and 51.9 Mi memory
2023-07-05 13:44:04.401221: Running the command: "cactus_analyseAssembly HG01928.2.sanitized.fa"
2023-07-05 13:44:04.404454: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/ba38/e616/tmpg86ovdoe/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p'" in 1.1869 seconds and 54.7 Mi memory
2023-07-05 13:44:04.404593: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/b78e/f624/tmpj2qseu4t/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p'" in 1.1842 seconds and 51.9 Mi memory
2023-07-05 13:44:04.405004: Running the command: "cactus_analyseAssembly HG02818.1.sanitized.fa"
2023-07-05 13:44:04.411394: Running the command: "cactus_analyseAssembly HG01361.2.sanitized.fa"
2023-07-05 13:44:04.411928: Running the command: "cactus_analyseAssembly HG02723.2.sanitized.fa"
2023-07-05 13:44:04.414463: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/be11/e14e/tmp4x72c6k5/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p'" in 1.1932 seconds and 51.9 Mi memory
2023-07-05 13:44:04.415855: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ead6/de56/tmp03ixu8gj/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-05 13:44:04.421340: Running the command: "cactus_analyseAssembly HG03492.1.sanitized.fa"
2023-07-05 13:44:04.433115: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/75f2/75ba/tmpocooz1l_/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p"
2023-07-05 13:44:04.437045: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/c129/0005/tmpfbkl1net/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p"
Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 5 Total-length: 90362004 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 82853468 Median-sequence-length: 2865743 Max-sequence-length: 82853468 Min-sequence-length: 40590

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 6 Total-length: 90816662 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 88312700 Median-sequence-length: 252390 Max-sequence-length: 88312700 Min-sequence-length: 34117

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 11 Total-length: 37859832 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 9978505 Median-sequence-length: 1075285 Max-sequence-length: 12272396 Min-sequence-length: 18185

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 15 Total-length: 38400045 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 4939881 Median-sequence-length: 1483736 Max-sequence-length: 8737423 Min-sequence-length: 103638

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 8 Total-length: 92324786 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51798394 Median-sequence-length: 119705 Max-sequence-length: 51798394 Min-sequence-length: 30958

Got message from job at time 07-05-2023 13:44:04: Assembly stats for NA20129.1: Input-sample: NA20129.1.sanitized.fa Total-sequences: 7 Total-length: 90326335 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25416072 Median-sequence-length: 14113501 Max-sequence-length: 26714407 Min-sequence-length: 435599

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG01071.1: Input-sample: HG01071.1.sanitized.fa Total-sequences: 6 Total-length: 90465782 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 60820654 Median-sequence-length: 956943 Max-sequence-length: 60820654 Min-sequence-length: 51184

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 9 Total-length: 44535997 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12740766 Median-sequence-length: 4188679 Max-sequence-length: 12876050 Min-sequence-length: 23622

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 6 Total-length: 95452375 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24480929 Median-sequence-length: 23826335 Max-sequence-length: 40909061 Min-sequence-length: 45431

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 3 Total-length: 89037318 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 86973997 Median-sequence-length: 1052858 Max-sequence-length: 86973997 Min-sequence-length: 1010463

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 6 Total-length: 82168338 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16629755 Median-sequence-length: 15151051 Max-sequence-length: 33113136 Min-sequence-length: 1213815

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 3 Total-length: 90390646 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 76521178 Median-sequence-length: 13739977 Max-sequence-length: 76521178 Min-sequence-length: 129491

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 9 Total-length: 82824591 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12831677 Median-sequence-length: 9789585 Max-sequence-length: 19192327 Min-sequence-length: 82292

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 6 Total-length: 40465604 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 21737033 Median-sequence-length: 5637083 Max-sequence-length: 21737033 Min-sequence-length: 530175

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 2 Total-length: 38794459 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34315036 Median-sequence-length: 34315036 Max-sequence-length: 34315036 Min-sequence-length: 4479423

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 6 Total-length: 83672027 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15187308 Median-sequence-length: 15187308 Max-sequence-length: 18827306 Min-sequence-length: 6375807

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 6 Total-length: 65578928 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14894037 Median-sequence-length: 12662144 Max-sequence-length: 30616204 Min-sequence-length: 227512

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 4 Total-length: 44731835 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39720081 Median-sequence-length: 4368431 Max-sequence-length: 39720081 Min-sequence-length: 89841

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 9 Total-length: 39019560 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 7997468 Median-sequence-length: 3853139 Max-sequence-length: 14093704 Min-sequence-length: 34730

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 4 Total-length: 44785647 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12751765 Median-sequence-length: 12751765 Max-sequence-length: 16886086 Min-sequence-length: 2831518

Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 4 Total-length: 38721826 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12760464 Median-sequence-length: 12760464 Max-sequence-length: 13673231 Min-sequence-length: 1420579

Got message from job at time 07-05-2023 13:44:04: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 8245 Total-length: 53252630 Proportion-repeat-masked: 0.258137 ProportionNs: 0.258137 Total-Ns: 13746483 N50: 78331 Median-sequence-length: 88 Max-sequence-length: 10526019 Min-sequence-length: 1

2023-07-05 13:44:04.989671: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/41b9/4acf/tmpd_k8vv_d/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p"
Got message from job at time 07-05-2023 13:44:04: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 6 Total-length: 65701343 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14885087 Median-sequence-length: 13938619 Max-sequence-length: 31458160 Min-sequence-length: 56791

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 6 Total-length: 66703938 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29579276 Median-sequence-length: 2434428 Max-sequence-length: 32528763 Min-sequence-length: 604849

2023-07-05 13:44:05.020698: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9897/a00d/tmpull_creo/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p'" in 0.5789 seconds and 51.9 Mi memory
2023-07-05 13:44:05.022639: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/75f2/75ba/tmpocooz1l_/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p'" in 0.5884 seconds and 62.2 Mi memory
2023-07-05 13:44:05.023758: Running the command: "cactus_analyseAssembly HG02148.2.sanitized.fa"
2023-07-05 13:44:05.025766: Running the command: "cactus_analyseAssembly HG02559.1.sanitized.fa"
Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 6 Total-length: 66637657 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 21632740 Median-sequence-length: 6752378 Max-sequence-length: 29101366 Min-sequence-length: 1307161

2023-07-05 13:44:05.042727: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ead6/de56/tmp03ixu8gj/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p'" in 0.6257 seconds and 51.9 Mi memory
2023-07-05 13:44:05.045923: Running the command: "cactus_analyseAssembly HG00735.2.sanitized.fa"
Got message from job at time 07-05-2023 13:44:05: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 64444167 Proportion-repeat-masked: 0.007757 ProportionNs: 0.007757 Total-Ns: 499910 N50: 64444167 Median-sequence-length: 64444167 Max-sequence-length: 64444167 Min-sequence-length: 64444167

2023-07-05 13:44:05.052559: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/c129/0005/tmpfbkl1net/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p'" in 0.6143 seconds and 51.9 Mi memory
2023-07-05 13:44:05.055386: Running the command: "cactus_analyseAssembly HG00735.1.sanitized.fa"
Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 5 Total-length: 66232187 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 50042374 Median-sequence-length: 690683 Max-sequence-length: 50042374 Min-sequence-length: 264555

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 5 Total-length: 67482969 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 65263154 Median-sequence-length: 706067 Max-sequence-length: 65263154 Min-sequence-length: 45393

Got message from job at time 07-05-2023 13:44:05: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 8 Total-length: 63067656 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12122492 Median-sequence-length: 11733137 Max-sequence-length: 14897035 Min-sequence-length: 604288

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 6 Total-length: 81906041 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17113346 Median-sequence-length: 17113346 Max-sequence-length: 22341762 Min-sequence-length: 6377999

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 5 Total-length: 66243613 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36196188 Median-sequence-length: 1027295 Max-sequence-length: 36196188 Min-sequence-length: 57832

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 4 Total-length: 66288475 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 45286435 Median-sequence-length: 14886362 Max-sequence-length: 45286435 Min-sequence-length: 1307487

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 4 Total-length: 66338498 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31381594 Median-sequence-length: 31381594 Max-sequence-length: 31695338 Min-sequence-length: 1310203

2023-07-05 13:44:05.258190: Successfully ran: "cactus_analyseAssembly HG02818.1.sanitized.fa" in 0.8524 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 4 Total-length: 66127947 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33326944 Median-sequence-length: 27421902 Max-sequence-length: 33326944 Min-sequence-length: 1300513

2023-07-05 13:44:05.268777: Successfully ran: "cactus_analyseAssembly HG01928.2.sanitized.fa" in 0.8668 seconds and 56.8 Mi memory
2023-07-05 13:44:05.271213: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 0.859 seconds and 54.4 Mi memory
2023-07-05 13:44:05.276979: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 0.8642 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 7 Total-length: 65953384 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27395246 Median-sequence-length: 878190 Max-sequence-length: 32314916 Min-sequence-length: 256633

2023-07-05 13:44:05.290763: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 0.8687 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:44:05: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 66210255 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 66210255 Median-sequence-length: 66210255 Max-sequence-length: 66210255 Min-sequence-length: 66210255

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 8 Total-length: 65796818 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23868385 Median-sequence-length: 3278764 Max-sequence-length: 28092360 Min-sequence-length: 49134

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 6 Total-length: 65056113 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14899450 Median-sequence-length: 13534924 Max-sequence-length: 30831981 Min-sequence-length: 256032

2023-07-05 13:44:05.380178: Successfully ran: "cactus_analyseAssembly HG01071.1.sanitized.fa" in 0.9074 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 6 Total-length: 82528814 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19132074 Median-sequence-length: 12833307 Max-sequence-length: 41112674 Min-sequence-length: 1768644

2023-07-05 13:44:05.405370: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 0.9131 seconds and 153.9 Mi memory
2023-07-05 13:44:05.407514: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 0.9193 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 7 Total-length: 82392802 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 34 N50: 18423233 Median-sequence-length: 3620545 Max-sequence-length: 33925518 Min-sequence-length: 2345349

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 12 Total-length: 82683767 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12821407 Median-sequence-length: 5873193 Max-sequence-length: 29111586 Min-sequence-length: 379133

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 8 Total-length: 84677523 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19110869 Median-sequence-length: 10392764 Max-sequence-length: 24824907 Min-sequence-length: 3089800

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 8 Total-length: 81190864 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25502608 Median-sequence-length: 6021294 Max-sequence-length: 31594101 Min-sequence-length: 70236

2023-07-05 13:44:05.493434: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 0.4689 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 8 Total-length: 81921109 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19687700 Median-sequence-length: 6302890 Max-sequence-length: 25962499 Min-sequence-length: 3789900

2023-07-05 13:44:05.506704: Successfully ran: "cactus_analyseAssembly HG00735.1.sanitized.fa" in 0.4506 seconds and 51.9 Mi memory
2023-07-05 13:44:05.516544: Successfully ran: "cactus_analyseAssembly HG02559.1.sanitized.fa" in 0.49 seconds and 62.2 Mi memory
2023-07-05 13:44:05.518268: Successfully ran: "cactus_analyseAssembly HG00735.2.sanitized.fa" in 0.4716 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:44:05: Assembly stats for NA20129.1: Input-sample: NA20129.1.sanitized.fa Total-sequences: 13 Total-length: 82827883 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12662645 Median-sequence-length: 4943003 Max-sequence-length: 26416485 Min-sequence-length: 36418

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 10 Total-length: 144164187 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40244068 Median-sequence-length: 6463596 Max-sequence-length: 50125412 Min-sequence-length: 423016

Got message from job at time 07-05-2023 13:44:05: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 13486 Total-length: 87021951 Proportion-repeat-masked: 0.003875 ProportionNs: 0.003875 Total-Ns: 337225 N50: 68477 Median-sequence-length: 94 Max-sequence-length: 3814866 Min-sequence-length: 1

2023-07-05 13:44:05.613812: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/41b9/4acf/tmpd_k8vv_d/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p'" in 0.6227 seconds and 51.9 Mi memory
2023-07-05 13:44:05.616704: Running the command: "cactus_analyseAssembly HG02486.2.sanitized.fa"
Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 15 Total-length: 145715800 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22859333 Median-sequence-length: 5076450 Max-sequence-length: 26710834 Min-sequence-length: 650888

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 8 Total-length: 146562172 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 101822643 Median-sequence-length: 4908659 Max-sequence-length: 101822643 Min-sequence-length: 61218

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG03540.1: Input-sample: HG03540.1.sanitized.fa Total-sequences: 6 Total-length: 147219436 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26319483 Median-sequence-length: 26319483 Max-sequence-length: 42927994 Min-sequence-length: 3409287

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 7 Total-length: 145410907 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41425354 Median-sequence-length: 11781171 Max-sequence-length: 57976755 Min-sequence-length: 315478

Got message from job at time 07-05-2023 13:44:05: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 13 Total-length: 145454837 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41930598 Median-sequence-length: 2114027 Max-sequence-length: 58337292 Min-sequence-length: 84378

2023-07-05 13:44:05.753000: Successfully ran: "cactus_analyseAssembly HG01891.1.sanitized.fa" in 1.2666 seconds and 54.9 Mi memory
Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 6 Total-length: 146640275 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51678831 Median-sequence-length: 21793355 Max-sequence-length: 52399753 Min-sequence-length: 2142229

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 6 Total-length: 147242187 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33019590 Median-sequence-length: 19162736 Max-sequence-length: 58321483 Min-sequence-length: 10756421

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 4 Total-length: 146295503 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 101229942 Median-sequence-length: 38449716 Max-sequence-length: 101229942 Min-sequence-length: 2126497

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 8 Total-length: 146337029 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40826998 Median-sequence-length: 9752706 Max-sequence-length: 51941813 Min-sequence-length: 19169

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 9 Total-length: 145853557 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 74217139 Median-sequence-length: 4488169 Max-sequence-length: 74217139 Min-sequence-length: 597972

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 5 Total-length: 146132355 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42574875 Median-sequence-length: 33047438 Max-sequence-length: 68540172 Min-sequence-length: 35724

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 8 Total-length: 79562414 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 13445886 Median-sequence-length: 9429999 Max-sequence-length: 20030106 Min-sequence-length: 2129299

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG03540.1: Input-sample: HG03540.1.sanitized.fa Total-sequences: 6 Total-length: 90812467 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 60980295 Median-sequence-length: 12888484 Max-sequence-length: 60980295 Min-sequence-length: 25290

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 13 Total-length: 135620593 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34095471 Median-sequence-length: 5715806 Max-sequence-length: 36015276 Min-sequence-length: 27880

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 8 Total-length: 82737411 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18510129 Median-sequence-length: 14269294 Max-sequence-length: 24612623 Min-sequence-length: 49882

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 11 Total-length: 100420294 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 80695330 Median-sequence-length: 419855 Max-sequence-length: 80695330 Min-sequence-length: 63609

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG01071.1: Input-sample: HG01071.1.sanitized.fa Total-sequences: 8 Total-length: 82905390 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20738844 Median-sequence-length: 3827008 Max-sequence-length: 39967668 Min-sequence-length: 608271

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 6 Total-length: 82818719 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24172493 Median-sequence-length: 15198726 Max-sequence-length: 24620262 Min-sequence-length: 217241

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 7 Total-length: 83773675 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43942241 Median-sequence-length: 5577148 Max-sequence-length: 43942241 Min-sequence-length: 1237651

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 10 Total-length: 133548795 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27230125 Median-sequence-length: 5463651 Max-sequence-length: 63381128 Min-sequence-length: 720777

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 7 Total-length: 87070481 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 53670445 Median-sequence-length: 3924870 Max-sequence-length: 53670445 Min-sequence-length: 364189

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 9 Total-length: 133538911 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33109852 Median-sequence-length: 3391109 Max-sequence-length: 50746123 Min-sequence-length: 755989

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 6 Total-length: 82624430 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 21821915 Median-sequence-length: 17990382 Max-sequence-length: 39999794 Min-sequence-length: 86518

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 12 Total-length: 134384583 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36041361 Median-sequence-length: 5225570 Max-sequence-length: 40289333 Min-sequence-length: 598617

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 6 Total-length: 132620567 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35318893 Median-sequence-length: 27738722 Max-sequence-length: 58990568 Min-sequence-length: 1271687

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 4 Total-length: 82794354 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 56744966 Median-sequence-length: 19010507 Max-sequence-length: 56744966 Min-sequence-length: 979759

Got message from job at time 07-05-2023 13:44:05: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 2 Total-length: 95748616 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 95732608 Median-sequence-length: 95732608 Max-sequence-length: 95732608 Min-sequence-length: 16008

Got message from job at time 07-05-2023 13:44:06: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 8910 Total-length: 109129424 Proportion-repeat-masked: 0.169758 ProportionNs: 0.169758 Total-Ns: 18525617 N50: 100302 Median-sequence-length: 118 Max-sequence-length: 18236296 Min-sequence-length: 1

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 6 Total-length: 133237631 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40021522 Median-sequence-length: 28295539 Max-sequence-length: 55070229 Min-sequence-length: 2991567

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 12 Total-length: 133446659 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34813650 Median-sequence-length: 5207367 Max-sequence-length: 35403888 Min-sequence-length: 24973

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 8 Total-length: 133091006 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39849123 Median-sequence-length: 3466848 Max-sequence-length: 66015324 Min-sequence-length: 506047

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 7 Total-length: 82598090 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24605185 Median-sequence-length: 1970422 Max-sequence-length: 38131350 Min-sequence-length: 19440

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 3 Total-length: 87190655 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 85427281 Median-sequence-length: 1562332 Max-sequence-length: 85427281 Min-sequence-length: 201042

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 11 Total-length: 81997794 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15775135 Median-sequence-length: 5993547 Max-sequence-length: 16752477 Min-sequence-length: 23985

2023-07-05 13:44:06.071765: Successfully ran: "cactus_analyseAssembly HG02486.2.sanitized.fa" in 0.4543 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 5 Total-length: 84010418 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 58423103 Median-sequence-length: 6231582 Max-sequence-length: 58423103 Min-sequence-length: 71387

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 8 Total-length: 82378295 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19009718 Median-sequence-length: 10811246 Max-sequence-length: 31553559 Min-sequence-length: 19093

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 6 Total-length: 82655364 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24581446 Median-sequence-length: 20353394 Max-sequence-length: 36724529 Min-sequence-length: 62688

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 8 Total-length: 84496215 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43463911 Median-sequence-length: 886340 Max-sequence-length: 43463911 Min-sequence-length: 19354

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 11 Total-length: 82526398 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15527606 Median-sequence-length: 3534114 Max-sequence-length: 28951777 Min-sequence-length: 30379

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 4 Total-length: 81030537 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41874143 Median-sequence-length: 18959810 Max-sequence-length: 41874143 Min-sequence-length: 5001229

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG00735.1: Input-sample: HG00735.1.sanitized.fa Total-sequences: 6 Total-length: 82115942 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 53384138 Median-sequence-length: 3813470 Max-sequence-length: 53384138 Min-sequence-length: 119589

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 7 Total-length: 145809761 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51687647 Median-sequence-length: 9402542 Max-sequence-length: 54382095 Min-sequence-length: 655009

2023-07-05 13:44:06.138738: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/249f/3abc/tmp2b2pl4cw/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p"
Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 10 Total-length: 146138122 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26661825 Median-sequence-length: 12451882 Max-sequence-length: 32302190 Min-sequence-length: 460454

2023-07-05 13:44:06.145883: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/798c/4965/tmpu07ju9ue/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p"
2023-07-05 13:44:06.146844: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/acbe/e72e/tmpdg1sp3u3/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p"
Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 8 Total-length: 145805288 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 92876528 Median-sequence-length: 9238381 Max-sequence-length: 92876528 Min-sequence-length: 57552

2023-07-05 13:44:06.173132: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/2ccb/2c17/tmp4ix737gz/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
2023-07-05 13:44:06.178271: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/76e5/46b7/tmpqfhmuz8a/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p"
Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 9 Total-length: 132825672 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 70390878 Median-sequence-length: 5206217 Max-sequence-length: 70390878 Min-sequence-length: 513771

2023-07-05 13:44:06.187428: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e87d/486f/tmp7va1m335/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p"
2023-07-05 13:44:06.195122: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/b2bb/777f/tmp4k7tgmko/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p"
2023-07-05 13:44:06.195320: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e2a2/c2db/tmpih0uqn0d/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG01071.1: Input-sample: HG01071.1.sanitized.fa Total-sequences: 6 Total-length: 133215875 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 88641151 Median-sequence-length: 5321904 Max-sequence-length: 88641151 Min-sequence-length: 28758

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 7 Total-length: 133827419 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 83340655 Median-sequence-length: 5787789 Max-sequence-length: 83340655 Min-sequence-length: 755903

2023-07-05 13:44:06.210729: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/d0a4/51ed/tmpo1d2s8xn/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p"
2023-07-05 13:44:06.216827: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/6703/cefa/tmprts9b20o/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p"
Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 5 Total-length: 144759037 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 49532190 Median-sequence-length: 28519043 Max-sequence-length: 58969901 Min-sequence-length: 660268

2023-07-05 13:44:06.223973: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/7611/ad81/tmp5icbm6rc/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p"
Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 3 Total-length: 144272501 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 137812121 Median-sequence-length: 4490278 Max-sequence-length: 137812121 Min-sequence-length: 1970102

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 10 Total-length: 146041646 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31907007 Median-sequence-length: 10509467 Max-sequence-length: 54388054 Min-sequence-length: 315599

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 8 Total-length: 145158192 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30681731 Median-sequence-length: 18429933 Max-sequence-length: 53851632 Min-sequence-length: 2118585

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 9 Total-length: 145700705 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41317396 Median-sequence-length: 4932110 Max-sequence-length: 51230552 Min-sequence-length: 21931

2023-07-05 13:44:06.294334: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ed16/c5ee/tmp41si1lep/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p"
Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 12 Total-length: 134302200 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34383521 Median-sequence-length: 5004714 Max-sequence-length: 36133193 Min-sequence-length: 399673

Got message from job at time 07-05-2023 13:44:06: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 101161492 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 101161492 Median-sequence-length: 101161492 Max-sequence-length: 101161492 Min-sequence-length: 101161492

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 8 Total-length: 145887536 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41984302 Median-sequence-length: 12458126 Max-sequence-length: 54377190 Min-sequence-length: 657138

Got message from job at time 07-05-2023 13:44:06: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 10 Total-length: 146384482 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39285459 Median-sequence-length: 11630425 Max-sequence-length: 42828295 Min-sequence-length: 655472

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 6 Total-length: 83038823 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19095718 Median-sequence-length: 14754601 Max-sequence-length: 30574633 Min-sequence-length: 421869

2023-07-05 13:44:06.427921: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/5531/72fd/tmpu_tz98zm/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p"
Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 4 Total-length: 146110040 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42000542 Median-sequence-length: 42000542 Max-sequence-length: 58332297 Min-sequence-length: 12630244

2023-07-05 13:44:06.450164: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/6e62/8672/tmpuot8w46o/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p"
Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-9iwdsbq3 v1 with job batch system ID: 2654 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 13:44:06.532953: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a45a/bb45/tmp47wuml4d/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p"
Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 6 Total-length: 133028670 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32885802 Median-sequence-length: 19951649 Max-sequence-length: 63377803 Min-sequence-length: 3391810

2023-07-05 13:44:06.534528: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/eda2/34c0/tmpvjtraco_/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p"
2023-07-05 13:44:06.541850: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/144b/15d7/tmp2cjjytv2/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p"
Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 12 Total-length: 145886553 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26670169 Median-sequence-length: 9745623 Max-sequence-length: 32654132 Min-sequence-length: 32390

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 10 Total-length: 146576364 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37804788 Median-sequence-length: 3909758 Max-sequence-length: 59998234 Min-sequence-length: 25215

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 9 Total-length: 83640502 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12557558 Median-sequence-length: 9830463 Max-sequence-length: 19113774 Min-sequence-length: 885859

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 6 Total-length: 134386790 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 83351920 Median-sequence-length: 10898125 Max-sequence-length: 83351920 Min-sequence-length: 4878290

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 17 Total-length: 146038381 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41085118 Median-sequence-length: 1932783 Max-sequence-length: 57013459 Min-sequence-length: 16878

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 13 Total-length: 133177888 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33137317 Median-sequence-length: 5535499 Max-sequence-length: 40478423 Min-sequence-length: 1270287

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 7 Total-length: 82454485 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41524364 Median-sequence-length: 5455378 Max-sequence-length: 41524364 Min-sequence-length: 41111

Got message from job at time 07-05-2023 13:44:06: Assembly stats for NA18906.1: Input-sample: NA18906.1.sanitized.fa Total-sequences: 4 Total-length: 146349906 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 109207271 Median-sequence-length: 21477069 Max-sequence-length: 109207271 Min-sequence-length: 4926521

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 14 Total-length: 146177608 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24784440 Median-sequence-length: 9790087 Max-sequence-length: 31753691 Min-sequence-length: 26445

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 9 Total-length: 146725408 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24252028 Median-sequence-length: 14348207 Max-sequence-length: 33911528 Min-sequence-length: 2119349

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 9 Total-length: 145424729 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 38884147 Median-sequence-length: 6549990 Max-sequence-length: 53607392 Min-sequence-length: 23152

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 6 Total-length: 133243157 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 86979981 Median-sequence-length: 3509646 Max-sequence-length: 86979981 Min-sequence-length: 1255243

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 2 Total-length: 133174113 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 130516847 Median-sequence-length: 130516847 Max-sequence-length: 130516847 Min-sequence-length: 2657266

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 6 Total-length: 83625833 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43142987 Median-sequence-length: 15196988 Max-sequence-length: 43142987 Min-sequence-length: 104779

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG02622.1: Input-sample: HG02622.1.sanitized.fa Total-sequences: 5 Total-length: 85436053 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 58076271 Median-sequence-length: 5822868 Max-sequence-length: 58076271 Min-sequence-length: 34008

Got message from job at time 07-05-2023 13:44:06: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 5 Total-length: 134169135 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 83364344 Median-sequence-length: 5730476 Max-sequence-length: 83364344 Min-sequence-length: 4142875

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 5 Total-length: 134034176 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 123737347 Median-sequence-length: 4643765 Max-sequence-length: 123737347 Min-sequence-length: 319288

Got message from job at time 07-05-2023 13:44:07: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 13 Total-length: 132864728 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17440620 Median-sequence-length: 6066535 Max-sequence-length: 35990118 Min-sequence-length: 1264377

Got message from job at time 07-05-2023 13:44:07: Assembly stats for NA18906.1: Input-sample: NA18906.1.sanitized.fa Total-sequences: 5 Total-length: 133477351 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 87452767 Median-sequence-length: 6479528 Max-sequence-length: 87452767 Min-sequence-length: 34172

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 2 Total-length: 144944347 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 142826854 Median-sequence-length: 142826854 Max-sequence-length: 142826854 Min-sequence-length: 2117493

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 12 Total-length: 87946721 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 50576066 Median-sequence-length: 414531 Max-sequence-length: 50576066 Min-sequence-length: 24590

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG03540.1: Input-sample: HG03540.1.sanitized.fa Total-sequences: 5 Total-length: 88322484 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22930156 Median-sequence-length: 15150735 Max-sequence-length: 42967410 Min-sequence-length: 1230769

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 11 Total-length: 82061936 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18231640 Median-sequence-length: 5136378 Max-sequence-length: 30220240 Min-sequence-length: 62261

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 8 Total-length: 83007258 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17594864 Median-sequence-length: 6333138 Max-sequence-length: 39352231 Min-sequence-length: 57432

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 10 Total-length: 88897002 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16788279 Median-sequence-length: 8061585 Max-sequence-length: 33322223 Min-sequence-length: 34009

Got message from job at time 07-05-2023 13:44:07: Assembly stats for NA18906.1: Input-sample: NA18906.1.sanitized.fa Total-sequences: 8 Total-length: 84284793 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18170745 Median-sequence-length: 11613955 Max-sequence-length: 25147017 Min-sequence-length: 31536

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 7 Total-length: 84223870 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43857426 Median-sequence-length: 2730375 Max-sequence-length: 43857426 Min-sequence-length: 217495

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 14 Total-length: 83001168 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12601738 Median-sequence-length: 4343944 Max-sequence-length: 17998358 Min-sequence-length: 102072

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 6 Total-length: 82261073 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36498392 Median-sequence-length: 5242547 Max-sequence-length: 36980093 Min-sequence-length: 89278

Got message from job at time 07-05-2023 13:44:07: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 84276897 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 84276897 Median-sequence-length: 84276897 Max-sequence-length: 84276897 Min-sequence-length: 84276897

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 7 Total-length: 82110555 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17968109 Median-sequence-length: 6344051 Max-sequence-length: 29806732 Min-sequence-length: 259295

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 7 Total-length: 83171934 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22723908 Median-sequence-length: 14267957 Max-sequence-length: 25159158 Min-sequence-length: 33473

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 10 Total-length: 83316590 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19041008 Median-sequence-length: 5728024 Max-sequence-length: 25036364 Min-sequence-length: 80941

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 5 Total-length: 82734540 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42598368 Median-sequence-length: 15190803 Max-sequence-length: 42598368 Min-sequence-length: 1221046

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 6 Total-length: 83558240 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26618773 Median-sequence-length: 16378693 Max-sequence-length: 30834896 Min-sequence-length: 2731991

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 8 Total-length: 133957875 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 83360882 Median-sequence-length: 5035015 Max-sequence-length: 83360882 Min-sequence-length: 314597

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 6 Total-length: 99719034 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 68939238 Median-sequence-length: 1012955 Max-sequence-length: 68939238 Min-sequence-length: 33309

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 13 Total-length: 91282335 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28631176 Median-sequence-length: 114820 Max-sequence-length: 36943970 Min-sequence-length: 42074

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 7 Total-length: 83118200 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 21979868 Median-sequence-length: 5260949 Max-sequence-length: 37662358 Min-sequence-length: 1190912

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 7 Total-length: 133811505 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40613953 Median-sequence-length: 7657272 Max-sequence-length: 62883715 Min-sequence-length: 1171091

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 4 Total-length: 134554073 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 124689476 Median-sequence-length: 6149724 Max-sequence-length: 124689476 Min-sequence-length: 323822

2023-07-05 13:44:07.326396: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/249f/3abc/tmp2b2pl4cw/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p'" in 1.1864 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 4 Total-length: 101700153 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 99059447 Median-sequence-length: 955684 Max-sequence-length: 99059447 Min-sequence-length: 774520

2023-07-05 13:44:07.332797: Running the command: "cactus_analyseAssembly HG02572.2.sanitized.fa"
Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 3 Total-length: 91376255 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 90884918 Median-sequence-length: 375457 Max-sequence-length: 90884918 Min-sequence-length: 115880

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 5 Total-length: 133353913 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 83363442 Median-sequence-length: 5739699 Max-sequence-length: 83363442 Min-sequence-length: 816753

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 7 Total-length: 83257895 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43597447 Median-sequence-length: 9337605 Max-sequence-length: 43597447 Min-sequence-length: 15282

2023-07-05 13:44:07.356177: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/acbe/e72e/tmpdg1sp3u3/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 1.2081 seconds and 66.5 Mi memory
Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 5 Total-length: 93214014 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54028868 Median-sequence-length: 145282 Max-sequence-length: 54028868 Min-sequence-length: 119741

2023-07-05 13:44:07.362499: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-05 13:44:07.364522: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/76e5/46b7/tmpqfhmuz8a/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p'" in 1.185 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 8 Total-length: 134857118 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 83360731 Median-sequence-length: 3144716 Max-sequence-length: 83360731 Min-sequence-length: 312385

2023-07-05 13:44:07.371116: Running the command: "cactus_analyseAssembly HG03492.2.sanitized.fa"
Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 5 Total-length: 133324795 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 86750760 Median-sequence-length: 5204120 Max-sequence-length: 86750760 Min-sequence-length: 77243

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 9 Total-length: 135285591 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28569591 Median-sequence-length: 6914677 Max-sequence-length: 57853747 Min-sequence-length: 1957785

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 10 Total-length: 134034487 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40774990 Median-sequence-length: 3397164 Max-sequence-length: 63396212 Min-sequence-length: 314760

2023-07-05 13:44:07.398038: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/2ccb/2c17/tmp4ix737gz/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p'" in 1.2237 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:44:07: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 8 Total-length: 82222978 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16357333 Median-sequence-length: 13586048 Max-sequence-length: 28992953 Min-sequence-length: 223849

2023-07-05 13:44:07.404139: Running the command: "cactus_analyseAssembly CHM13.sanitized.fa"
Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 5 Total-length: 133494354 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 110558880 Median-sequence-length: 5726454 Max-sequence-length: 110558880 Min-sequence-length: 749032

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 2 Total-length: 133397416 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 96991120 Median-sequence-length: 96991120 Max-sequence-length: 96991120 Min-sequence-length: 36406296

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 5 Total-length: 133169103 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 127434230 Median-sequence-length: 2261179 Max-sequence-length: 127434230 Min-sequence-length: 31318

2023-07-05 13:44:07.428615: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/b2bb/777f/tmp4k7tgmko/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p'" in 1.2323 seconds and 154.0 Mi memory
2023-07-05 13:44:07.430918: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e87d/486f/tmp7va1m335/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p'" in 1.2423 seconds and 73.3 Mi memory
2023-07-05 13:44:07.435845: Running the command: "cactus_analyseAssembly HG01978.2.sanitized.fa"
Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 7 Total-length: 83829545 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24715942 Median-sequence-length: 10953581 Max-sequence-length: 29171660 Min-sequence-length: 418342

2023-07-05 13:44:07.437456: Running the command: "cactus_analyseAssembly HG02055.1.sanitized.fa"
2023-07-05 13:44:07.442333: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e2a2/c2db/tmpih0uqn0d/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p'" in 1.2459 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 7 Total-length: 133246687 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 70710031 Median-sequence-length: 5918830 Max-sequence-length: 70710031 Min-sequence-length: 26235

2023-07-05 13:44:07.445064: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/d0a4/51ed/tmpo1d2s8xn/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p'" in 1.2331 seconds and 154.0 Mi memory
2023-07-05 13:44:07.448966: Running the command: "cactus_analyseAssembly HG03486.1.sanitized.fa"
2023-07-05 13:44:07.451188: Running the command: "cactus_analyseAssembly HG02257.2.sanitized.fa"
Got message from job at time 07-05-2023 13:44:07: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 8 Total-length: 134849855 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35992423 Median-sequence-length: 13978949 Max-sequence-length: 41634961 Min-sequence-length: 1744302

Got message from job at time 07-05-2023 13:44:07: Assembly stats for NA18906.1: Input-sample: NA18906.1.sanitized.fa Total-sequences: 3 Total-length: 87532416 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 87367107 Median-sequence-length: 126138 Max-sequence-length: 87367107 Min-sequence-length: 39171

2023-07-05 13:44:07.472586: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/7611/ad81/tmp5icbm6rc/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p'" in 1.2474 seconds and 56.3 Mi memory
Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 5 Total-length: 134265126 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 86705506 Median-sequence-length: 4895107 Max-sequence-length: 86705506 Min-sequence-length: 315088

2023-07-05 13:44:07.472940: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/6703/cefa/tmprts9b20o/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p'" in 1.2548 seconds and 154.0 Mi memory
2023-07-05 13:44:07.479276: Running the command: "cactus_analyseAssembly HG03453.1.sanitized.fa"
2023-07-05 13:44:07.479826: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/798c/4965/tmpu07ju9ue/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p'" in 1.3326 seconds and 154.0 Mi memory
2023-07-05 13:44:07.480576: Running the command: "cactus_analyseAssembly HG01358.1.sanitized.fa"
Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 10 Total-length: 87238079 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52800196 Median-sequence-length: 259736 Max-sequence-length: 52800196 Min-sequence-length: 45416

2023-07-05 13:44:07.486234: Running the command: "cactus_analyseAssembly HG01952.1.sanitized.fa"
Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 10 Total-length: 133343415 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 123323015 Median-sequence-length: 757004 Max-sequence-length: 123323015 Min-sequence-length: 23512

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 5 Total-length: 81255090 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19058223 Median-sequence-length: 17987804 Max-sequence-length: 24819984 Min-sequence-length: 4208473

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 6 Total-length: 82213556 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42479295 Median-sequence-length: 11644523 Max-sequence-length: 42479295 Min-sequence-length: 886491

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 17 Total-length: 89350893 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 63875839 Median-sequence-length: 262998 Max-sequence-length: 63875839 Min-sequence-length: 26459

2023-07-05 13:44:07.519191: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ed16/c5ee/tmp41si1lep/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p'" in 1.2235 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 6 Total-length: 80691541 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 56413220 Median-sequence-length: 5545878 Max-sequence-length: 56413220 Min-sequence-length: 22035

2023-07-05 13:44:07.525616: Running the command: "cactus_analyseAssembly HG02109.1.sanitized.fa"
Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 4 Total-length: 89468073 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 89075324 Median-sequence-length: 278265 Max-sequence-length: 89075324 Min-sequence-length: 47842

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 5 Total-length: 134409545 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 88668011 Median-sequence-length: 6140272 Max-sequence-length: 88668011 Min-sequence-length: 312656

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 7 Total-length: 82655478 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51902171 Median-sequence-length: 5760862 Max-sequence-length: 51902171 Min-sequence-length: 23967

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 11 Total-length: 82809130 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12751850 Median-sequence-length: 4337881 Max-sequence-length: 36639942 Min-sequence-length: 96636

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 8 Total-length: 84322951 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18621721 Median-sequence-length: 6118557 Max-sequence-length: 36128075 Min-sequence-length: 582828

Got message from job at time 07-05-2023 13:44:07: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 5 Total-length: 83963478 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18956833 Median-sequence-length: 15171254 Max-sequence-length: 28517325 Min-sequence-length: 7843189

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 9 Total-length: 83112428 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24607739 Median-sequence-length: 5221128 Max-sequence-length: 25104590 Min-sequence-length: 20806

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 9 Total-length: 82589440 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 57468676 Median-sequence-length: 88459 Max-sequence-length: 57468676 Min-sequence-length: 34413

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 21 Total-length: 83097571 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 7638086 Median-sequence-length: 1414847 Max-sequence-length: 15557952 Min-sequence-length: 73048

Got message from job at time 07-05-2023 13:44:07: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 11 Total-length: 83692559 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12197033 Median-sequence-length: 6507786 Max-sequence-length: 19080916 Min-sequence-length: 53681

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 5 Total-length: 82204350 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 57840561 Median-sequence-length: 5277189 Max-sequence-length: 57840561 Min-sequence-length: 83325

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 8 Total-length: 81153258 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20553548 Median-sequence-length: 2815791 Max-sequence-length: 34975216 Min-sequence-length: 20159

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 9 Total-length: 82933970 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20923871 Median-sequence-length: 8128055 Max-sequence-length: 24863408 Min-sequence-length: 47851

2023-07-05 13:44:07.623082: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/5531/72fd/tmpu_tz98zm/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p'" in 1.1939 seconds and 56.3 Mi memory
2023-07-05 13:44:07.629445: Running the command: "cactus_analyseAssembly HG00673.1.sanitized.fa"
Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 8 Total-length: 82794938 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18721753 Median-sequence-length: 6457569 Max-sequence-length: 37232433 Min-sequence-length: 38665

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 9 Total-length: 82858875 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17983569 Median-sequence-length: 5762923 Max-sequence-length: 22176293 Min-sequence-length: 671037

2023-07-05 13:44:07.668399: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/6e62/8672/tmpuot8w46o/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p'" in 1.2169 seconds and 60.7 Mi memory
2023-07-05 13:44:07.674682: Running the command: "cactus_analyseAssembly HG01978.1.sanitized.fa"
2023-07-05 13:44:07.719045: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/144b/15d7/tmp2cjjytv2/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p'" in 1.176 seconds and 51.9 Mi memory
2023-07-05 13:44:07.724966: Running the command: "cactus_analyseAssembly HG02080.1.sanitized.fa"
Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 5 Total-length: 63980511 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35627635 Median-sequence-length: 12096557 Max-sequence-length: 35627635 Min-sequence-length: 263355

2023-07-05 13:44:07.736138: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/eda2/34c0/tmpvjtraco_/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p'" in 1.2004 seconds and 57.3 Mi memory
2023-07-05 13:44:07.742420: Running the command: "cactus_analyseAssembly HG02622.1.sanitized.fa"
Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 5 Total-length: 66296510 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27194990 Median-sequence-length: 10015898 Max-sequence-length: 27793895 Min-sequence-length: 137556

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG00735.1: Input-sample: HG00735.1.sanitized.fa Total-sequences: 4 Total-length: 64912212 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35157692 Median-sequence-length: 27651277 Max-sequence-length: 35157692 Min-sequence-length: 794371

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 4 Total-length: 65447602 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 64300109 Median-sequence-length: 1017964 Max-sequence-length: 64300109 Min-sequence-length: 64088

Got message from job at time 07-05-2023 13:44:07: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 6 Total-length: 63982273 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32493583 Median-sequence-length: 2278746 Max-sequence-length: 32493583 Min-sequence-length: 602132

2023-07-05 13:44:07.839983: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a45a/bb45/tmp47wuml4d/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p'" in 1.3058 seconds and 51.9 Mi memory
2023-07-05 13:44:07.845726: Running the command: "cactus_analyseAssembly NA21309.2.sanitized.fa"
2023-07-05 13:44:07.995013: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/d889/bd61/tmpqv2x_2wa/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-05 13:44:08.061266: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/aa76/284c/tmpvu2wt7ui/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p"
2023-07-05 13:44:08.086015: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/0c81/774a/tmpakxid5ps/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p"
2023-07-05 13:44:08.094033: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/535b/c5bd/tmp6i6gv2d6/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p"
2023-07-05 13:44:08.098933: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/02b2/df55/tmpt4l1fxcy/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-05 13:44:08.170094: Successfully ran: "cactus_analyseAssembly HG02572.2.sanitized.fa" in 0.8365 seconds and 51.9 Mi memory
2023-07-05 13:44:08.215846: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/e654/1c1c/tmp5ccl0q4y/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p"
2023-07-05 13:44:08.217636: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/b389/42f9/tmpk5ipbat2/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p"
2023-07-05 13:44:08.221205: Successfully ran: "cactus_analyseAssembly HG02723.1.sanitized.fa" in 0.8578 seconds and 66.6 Mi memory
2023-07-05 13:44:08.222142: Successfully ran: "cactus_analyseAssembly HG03492.2.sanitized.fa" in 0.8503 seconds and 51.9 Mi memory
2023-07-05 13:44:08.241061: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/ddfa/5515/tmpygy9pw_f/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p"
2023-07-05 13:44:08.242673: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/921d/a12c/tmpeb_vcm2l/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p"
2023-07-05 13:44:08.248295: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/1c90/2071/tmpyjj384un/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p"
2023-07-05 13:44:08.249477: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/e5f6/8879/tmpm9r1fk_u/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p"
2023-07-05 13:44:08.302265: Successfully ran: "cactus_analyseAssembly HG02055.1.sanitized.fa" in 0.8641 seconds and 73.2 Mi memory
2023-07-05 13:44:08.305890: Successfully ran: "cactus_analyseAssembly HG03486.1.sanitized.fa" in 0.8562 seconds and 51.9 Mi memory
2023-07-05 13:44:08.319353: Successfully ran: "cactus_analyseAssembly CHM13.sanitized.fa" in 0.9143 seconds and 153.9 Mi memory
2023-07-05 13:44:08.339441: Successfully ran: "cactus_analyseAssembly HG01978.2.sanitized.fa" in 0.9027 seconds and 153.9 Mi memory
2023-07-05 13:44:08.350974: Successfully ran: "cactus_analyseAssembly HG03453.1.sanitized.fa" in 0.8709 seconds and 56.2 Mi memory
2023-07-05 13:44:08.353785: Successfully ran: "cactus_analyseAssembly HG02257.2.sanitized.fa" in 0.9018 seconds and 153.9 Mi memory
2023-07-05 13:44:08.389039: Successfully ran: "cactus_analyseAssembly HG01952.1.sanitized.fa" in 0.902 seconds and 153.9 Mi memory
2023-07-05 13:44:08.396660: Successfully ran: "cactus_analyseAssembly HG01358.1.sanitized.fa" in 0.9153 seconds and 153.9 Mi memory
2023-07-05 13:44:08.410120: Successfully ran: "cactus_analyseAssembly HG02109.1.sanitized.fa" in 0.8838 seconds and 51.9 Mi memory
2023-07-05 13:44:08.453911: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c920/8451/tmp3br1bi_m/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p"
2023-07-05 13:44:08.480905: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/04ab/3e29/tmpnz7ac0wy/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p"
2023-07-05 13:44:08.481630: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 0.8514 seconds and 56.2 Mi memory
2023-07-05 13:44:08.490984: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/2e74/2621/tmpwpnmagro/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p"
2023-07-05 13:44:08.495791: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/5598/a59b/tmpvyqja5r8/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p"
2023-07-05 13:44:08.498568: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/1fba/19f3/tmpq3oe63qn/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p"
2023-07-05 13:44:08.520460: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/d8f9/bebb/tmp6r2ug_1r/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p"
2023-07-05 13:44:08.531031: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8cfc/fcf0/tmpa7dp40ig/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p"
2023-07-05 13:44:08.531547: Successfully ran: "cactus_analyseAssembly HG01978.1.sanitized.fa" in 0.8561 seconds and 60.6 Mi memory
2023-07-05 13:44:08.573529: Successfully ran: "cactus_analyseAssembly HG02080.1.sanitized.fa" in 0.8478 seconds and 51.9 Mi memory
2023-07-05 13:44:08.598557: Successfully ran: "cactus_analyseAssembly HG02622.1.sanitized.fa" in 0.8554 seconds and 57.3 Mi memory
2023-07-05 13:44:08.600634: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/0a1e/038e/tmpshav4t4c/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p"
2023-07-05 13:44:08.635967: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/25e1/218f/tmpedecu98y/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p"
2023-07-05 13:44:08.652269: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/3a7f/0e31/tmpxhvdmo7d/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p"
2023-07-05 13:44:08.676624: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/7bef/2264/tmpmgu57wws/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p"
2023-07-05 13:44:08.677953: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/cd05/7720/tmpc3lh4ina/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p"
2023-07-05 13:44:08.681605: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/76d3/2672/tmps9ye3n5q/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p"
2023-07-05 13:44:08.694518: Successfully ran: "cactus_analyseAssembly NA21309.2.sanitized.fa" in 0.8479 seconds and 51.9 Mi memory
Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-jbg6yf0y v1 with job batch system ID: 2655 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 13:44:08.701759: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8c43/1862/tmpm8tk3un3/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-05 13:44:08.701810: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/ff07/af9d/tmp7e3hlv69/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
2023-07-05 13:44:08.705998: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/507b/c69f/tmpmabq9aew/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p"
2023-07-05 13:44:08.708647: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/a8d7/7ef3/tmpmuaryldv/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p"
2023-07-05 13:44:08.713870: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/606e/034a/tmpepjsc2hz/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p"
2023-07-05 13:44:08.722088: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/709e/6a24/tmpcoad2b4u/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p"
2023-07-05 13:44:08.722685: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/4b3b/72a2/tmpwzq36ldx/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p"
2023-07-05 13:44:08.738853: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/7c47/0ce1/tmpfkekyc_l/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p"
2023-07-05 13:44:08.744717: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8d87/90f5/tmp24wufule/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-05 13:44:08.761503: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/5642/3824/tmpb1rvw_6l/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p"
2023-07-05 13:44:08.766154: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/d3cc/5ec7/tmpgkfu743n/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p"
2023-07-05 13:44:08.773808: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/5824/9607/tmpj3eg5iq8/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:44:08.785814: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/34e1/46b5/tmpmbs4ix94/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p"
2023-07-05 13:44:08.795779: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/d521/3ded/tmptlkh_m8q/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p"
2023-07-05 13:44:08.812524: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/eb25/0916/tmpl21zhkzy/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p"
2023-07-05 13:44:08.831897: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/97d9/096a/tmp85xuipbd/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p"
2023-07-05 13:44:08.838047: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/e7ef/e0c3/tmppeyfk6if/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p"
2023-07-05 13:44:08.842148: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/dc6f/6d2b/tmpov1udgm7/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p"
2023-07-05 13:44:08.853690: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/f954/fa44/tmps0v1usal/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p"
2023-07-05 13:44:08.855779: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/da66/988c/tmp5rxzthbg/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-05 13:44:08.874920: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/61bf/dfbb/tmpdqpuyw2t/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p"
2023-07-05 13:44:08.887026: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/37dc/4a25/tmpcd36e443/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-05 13:44:08.887584: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/04b9/80b2/tmp4amaqwem/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p"
Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-uikpnjbc v1 with job batch system ID: 2656 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 13:44:08.901994: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/bd61/92cc/tmpuq763k7b/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p"
2023-07-05 13:44:08.919139: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/f08d/453e/tmp8sl1jjaf/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p"
2023-07-05 13:44:08.923854: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/b10e/2004/tmpes3otu5l/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p"
Got message from job at time 07-05-2023 13:44:08: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 5 Total-length: 133074002 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40335766 Median-sequence-length: 34403031 Max-sequence-length: 56207428 Min-sequence-length: 60847

Got message from job at time 07-05-2023 13:44:08: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 7 Total-length: 135375842 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 84998721 Median-sequence-length: 1557692 Max-sequence-length: 84998721 Min-sequence-length: 19312

Got message from job at time 07-05-2023 13:44:08: Assembly stats for HG01071.1: Input-sample: HG01071.1.sanitized.fa Total-sequences: 7 Total-length: 134359927 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 95521072 Median-sequence-length: 2111953 Max-sequence-length: 95521072 Min-sequence-length: 61513

Got message from job at time 07-05-2023 13:44:09: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 7 Total-length: 136836808 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36565555 Median-sequence-length: 8791886 Max-sequence-length: 56559896 Min-sequence-length: 16899

Got message from job at time 07-05-2023 13:44:09: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 13 Total-length: 136099976 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 11676281 Median-sequence-length: 9316858 Max-sequence-length: 31513733 Min-sequence-length: 67267

Got message from job at time 07-05-2023 13:44:09: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 6 Total-length: 134807114 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39810894 Median-sequence-length: 24096804 Max-sequence-length: 58469124 Min-sequence-length: 54598

Got message from job at time 07-05-2023 13:44:09: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 15 Total-length: 136798630 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17829111 Median-sequence-length: 5450644 Max-sequence-length: 32142237 Min-sequence-length: 32922

Got message from job at time 07-05-2023 13:44:09: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 13 Total-length: 134805000 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17870241 Median-sequence-length: 8268343 Max-sequence-length: 32187372 Min-sequence-length: 542650

Got message from job at time 07-05-2023 13:44:09: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 4 Total-length: 134824317 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 92045167 Median-sequence-length: 40625443 Max-sequence-length: 92045167 Min-sequence-length: 556369

2023-07-05 13:44:09.352779: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/aa76/284c/tmpvu2wt7ui/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p'" in 1.2903 seconds and 57.6 Mi memory
2023-07-05 13:44:09.359954: Running the command: "cactus_analyseAssembly HG02148.2.sanitized.fa"
2023-07-05 13:44:09.381433: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/0c81/774a/tmpakxid5ps/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p'" in 1.294 seconds and 72.3 Mi memory
2023-07-05 13:44:09.393460: Running the command: "cactus_analyseAssembly HG01978.2.sanitized.fa"
2023-07-05 13:44:09.410055: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/02b2/df55/tmpt4l1fxcy/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p'" in 1.3101 seconds and 66.3 Mi memory
2023-07-05 13:44:09.417421: Running the command: "cactus_analyseAssembly HG01175.2.sanitized.fa"
2023-07-05 13:44:09.422715: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/535b/c5bd/tmp6i6gv2d6/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p'" in 1.3274 seconds and 154.0 Mi memory
2023-07-05 13:44:09.430661: Running the command: "cactus_analyseAssembly HG02257.2.sanitized.fa"
2023-07-05 13:44:09.450134: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8d87/90f5/tmp24wufule/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p'" in 0.7039 seconds and 51.8 Mi memory
2023-07-05 13:44:09.452043: Running the command: "cactus_analyseAssembly HG00733.1.sanitized.fa"
2023-07-05 13:44:09.463807: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/a8d7/7ef3/tmpmuaryldv/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p'" in 0.754 seconds and 51.9 Mi memory
2023-07-05 13:44:09.465674: Running the command: "cactus_analyseAssembly HG01952.2.sanitized.fa"
2023-07-05 13:44:09.472091: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/37dc/4a25/tmpcd36e443/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p'" in 0.5839 seconds and 51.9 Mi memory
2023-07-05 13:44:09.474072: Running the command: "cactus_analyseAssembly HG01106.2.sanitized.fa"
2023-07-05 13:44:09.476079: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/bd61/92cc/tmpuq763k7b/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p'" in 0.5726 seconds and 51.9 Mi memory
2023-07-05 13:44:09.477718: Running the command: "cactus_analyseAssembly HG02886.2.sanitized.fa"
2023-07-05 13:44:09.480514: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8c43/1862/tmpm8tk3un3/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p'" in 0.7774 seconds and 51.9 Mi memory
2023-07-05 13:44:09.482148: Running the command: "cactus_analyseAssembly HG03516.2.sanitized.fa"
2023-07-05 13:44:09.482525: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/5642/3824/tmpb1rvw_6l/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p'" in 0.7196 seconds and 51.9 Mi memory
2023-07-05 13:44:09.484243: Running the command: "cactus_analyseAssembly HG01928.1.sanitized.fa"
2023-07-05 13:44:09.497149: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/d521/3ded/tmptlkh_m8q/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p'" in 0.7002 seconds and 24.1 Mi memory
2023-07-05 13:44:09.498980: Running the command: "cactus_analyseAssembly HG03486.2.sanitized.fa"
2023-07-05 13:44:09.499785: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/d889/bd61/tmpqv2x_2wa/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p'" in 1.5032 seconds and 51.9 Mi memory
2023-07-05 13:44:09.502559: Running the command: "cactus_analyseAssembly HG00733.2.sanitized.fa"
2023-07-05 13:44:09.507110: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/507b/c69f/tmpmabq9aew/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p'" in 0.7997 seconds and 51.9 Mi memory
2023-07-05 13:44:09.508237: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/1fba/19f3/tmpq3oe63qn/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p'" in 1.0082 seconds and 20.5 Mi memory
2023-07-05 13:44:09.508763: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/3a7f/0e31/tmpxhvdmo7d/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p'" in 0.855 seconds and 51.9 Mi memory
2023-07-05 13:44:09.508949: Running the command: "cactus_analyseAssembly HG01358.2.sanitized.fa"
2023-07-05 13:44:09.509255: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/2e74/2621/tmpwpnmagro/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p'" in 1.0168 seconds and 51.9 Mi memory
2023-07-05 13:44:09.509783: Running the command: "cactus_analyseAssembly HG02572.1.sanitized.fa"
2023-07-05 13:44:09.510833: Running the command: "cactus_analyseAssembly HG01978.2.sanitized.fa"
2023-07-05 13:44:09.511781: Running the command: "cactus_analyseAssembly HG01952.1.sanitized.fa"
2023-07-05 13:44:09.516714: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/7bef/2264/tmpmgu57wws/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p'" in 0.8388 seconds and 51.9 Mi memory
2023-07-05 13:44:09.518477: Running the command: "cactus_analyseAssembly HG00673.1.sanitized.fa"
2023-07-05 13:44:09.521663: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/25e1/218f/tmpedecu98y/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p'" in 0.8843 seconds and 51.9 Mi memory
2023-07-05 13:44:09.522207: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/4b3b/72a2/tmpwzq36ldx/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p'" in 0.7981 seconds and 51.9 Mi memory
2023-07-05 13:44:09.523257: Running the command: "cactus_analyseAssembly HG01243.1.sanitized.fa"
2023-07-05 13:44:09.523511: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/97d9/096a/tmp85xuipbd/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p'" in 0.6901 seconds and 20.5 Mi memory
2023-07-05 13:44:09.522478: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/e654/1c1c/tmp5ccl0q4y/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p'" in 1.3053 seconds and 58.1 Mi memory
2023-07-05 13:44:09.523972: Running the command: "cactus_analyseAssembly HG00735.1.sanitized.fa"
2023-07-05 13:44:09.523974: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/709e/6a24/tmpcoad2b4u/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p'" in 0.8005 seconds and 51.9 Mi memory
2023-07-05 13:44:09.525278: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/04ab/3e29/tmpnz7ac0wy/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p'" in 1.0429 seconds and 51.9 Mi memory
2023-07-05 13:44:09.525703: Running the command: "cactus_analyseAssembly HG02055.2.sanitized.fa"
2023-07-05 13:44:09.526683: Running the command: "cactus_analyseAssembly HG02818.2.sanitized.fa"
2023-07-05 13:44:09.526886: Running the command: "cactus_analyseAssembly HG03540.2.sanitized.fa"
2023-07-05 13:44:09.527135: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/ff07/af9d/tmp7e3hlv69/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p'" in 0.8238 seconds and 25.1 Mi memory
2023-07-05 13:44:09.527735: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c920/8451/tmp3br1bi_m/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p'" in 1.0724 seconds and 51.9 Mi memory
2023-07-05 13:44:09.529294: Running the command: "cactus_analyseAssembly HG02622.2.sanitized.fa"
2023-07-05 13:44:09.529521: Running the command: "cactus_analyseAssembly HG02109.2.sanitized.fa"
2023-07-05 13:44:09.529342: Running the command: "cactus_analyseAssembly HG01978.1.sanitized.fa"
2023-07-05 13:44:09.530708: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/7c47/0ce1/tmpfkekyc_l/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p'" in 0.7907 seconds and 51.9 Mi memory
2023-07-05 13:44:09.532484: Running the command: "cactus_analyseAssembly HG02055.1.sanitized.fa"
2023-07-05 13:44:09.536421: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/f08d/453e/tmp8sl1jjaf/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p'" in 0.6158 seconds and 51.9 Mi memory
2023-07-05 13:44:09.537314: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/5824/9607/tmpj3eg5iq8/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p'" in 0.7623 seconds and 26.4 Mi memory
2023-07-05 13:44:09.537625: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/76d3/2672/tmps9ye3n5q/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p'" in 0.8546 seconds and 17.9 Mi memory
2023-07-05 13:44:09.537929: Running the command: "cactus_analyseAssembly NA18906.1.sanitized.fa"
2023-07-05 13:44:09.539096: Running the command: "cactus_analyseAssembly HG01109.1.sanitized.fa"
2023-07-05 13:44:09.539339: Running the command: "cactus_analyseAssembly HG02630.1.sanitized.fa"
2023-07-05 13:44:09.543228: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/da66/988c/tmp5rxzthbg/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p'" in 0.6861 seconds and 51.9 Mi memory
2023-07-05 13:44:09.545496: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/0a1e/038e/tmpshav4t4c/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p'" in 0.9436 seconds and 51.9 Mi memory
2023-07-05 13:44:09.546219: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/606e/034a/tmpepjsc2hz/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p'" in 0.8309 seconds and 51.9 Mi memory
2023-07-05 13:44:09.546294: Running the command: "cactus_analyseAssembly HG00735.2.sanitized.fa"
2023-07-05 13:44:09.545197: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/1c90/2071/tmpyjj384un/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p'" in 1.2957 seconds and 54.5 Mi memory
2023-07-05 13:44:09.546879: Running the command: "cactus_analyseAssembly HG00673.2.sanitized.fa"
2023-07-05 13:44:09.547048: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/d3cc/5ec7/tmpgkfu743n/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p'" in 0.7797 seconds and 51.9 Mi memory
2023-07-05 13:44:09.547379: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/d8f9/bebb/tmp6r2ug_1r/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p'" in 1.0257 seconds and 51.8 Mi memory
2023-07-05 13:44:09.547955: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/04b9/80b2/tmp4amaqwem/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p'" in 0.6589 seconds and 51.9 Mi memory
2023-07-05 13:44:09.548080: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/61bf/dfbb/tmpdqpuyw2t/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p'" in 0.672 seconds and 51.9 Mi memory
2023-07-05 13:44:09.548750: Running the command: "cactus_analyseAssembly HG02723.2.sanitized.fa"
2023-07-05 13:44:09.548905: Running the command: "cactus_analyseAssembly HG01109.2.sanitized.fa"
2023-07-05 13:44:09.549186: Running the command: "cactus_analyseAssembly HG01123.1.sanitized.fa"
2023-07-05 13:44:09.549742: Running the command: "cactus_analyseAssembly HG01358.1.sanitized.fa"
2023-07-05 13:44:09.552218: Running the command: "cactus_analyseAssembly HG02559.1.sanitized.fa"
2023-07-05 13:44:09.553463: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/34e1/46b5/tmpmbs4ix94/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p'" in 0.7664 seconds and 51.9 Mi memory
2023-07-05 13:44:09.552608: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/dcd2/07dd/tmp6ex424f3/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p"
2023-07-05 13:44:09.554696: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/dc6f/6d2b/tmpov1udgm7/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p'" in 0.7114 seconds and 24.8 Mi memory
2023-07-05 13:44:09.554921: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/f954/fa44/tmps0v1usal/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p'" in 0.7001 seconds and 51.9 Mi memory
2023-07-05 13:44:09.556233: Running the command: "cactus_analyseAssembly HG01891.1.sanitized.fa"
2023-07-05 13:44:09.556340: Running the command: "cactus_analyseAssembly HG02572.2.sanitized.fa"
2023-07-05 13:44:09.556771: Running the command: "cactus_analyseAssembly HG01071.2.sanitized.fa"
2023-07-05 13:44:09.557085: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/eb25/0916/tmpl21zhkzy/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p'" in 0.7433 seconds and 51.9 Mi memory
2023-07-05 13:44:09.558801: Running the command: "cactus_analyseAssembly HG02257.2.sanitized.fa"
2023-07-05 13:44:09.561286: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/b10e/2004/tmpes3otu5l/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p'" in 0.6362 seconds and 51.9 Mi memory
2023-07-05 13:44:09.562953: Running the command: "cactus_analyseAssembly HG02148.2.sanitized.fa"
2023-07-05 13:44:09.562494: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/ddfa/5515/tmpygy9pw_f/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p'" in 1.3204 seconds and 77.4 Mi memory
2023-07-05 13:44:09.562755: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/caca/d444/tmpkqjs0q12/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p"
2023-07-05 13:44:09.569625: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8cfc/fcf0/tmpa7dp40ig/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p'" in 1.0367 seconds and 24.6 Mi memory
2023-07-05 13:44:09.569584: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/921d/a12c/tmpeb_vcm2l/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p'" in 1.3257 seconds and 54.5 Mi memory
2023-07-05 13:44:09.569704: Running the command: "cactus_analyseAssembly HG00741.2.sanitized.fa"
2023-07-05 13:44:09.573119: Running the command: "cactus_analyseAssembly HG03453.1.sanitized.fa"
2023-07-05 13:44:09.574132: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/cd05/7720/tmpc3lh4ina/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p'" in 0.8948 seconds and 51.9 Mi memory
2023-07-05 13:44:09.575621: Running the command: "cactus_analyseAssembly HG02486.1.sanitized.fa"
2023-07-05 13:44:09.575929: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/a3b3/5239/tmp8dox3_7i/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p"
2023-07-05 13:44:09.577119: Running the command: "cactus_analyseAssembly HG02055.2.sanitized.fa"
2023-07-05 13:44:09.590656: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/5598/a59b/tmpvyqja5r8/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p'" in 1.0935 seconds and 51.9 Mi memory
2023-07-05 13:44:09.592092: Running the command: "cactus_analyseAssembly HG00438.1.sanitized.fa"
2023-07-05 13:44:09.599574: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/b389/42f9/tmpk5ipbat2/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p'" in 1.3807 seconds and 154.0 Mi memory
2023-07-05 13:44:09.600683: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/e7ef/e0c3/tmppeyfk6if/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p'" in 0.7614 seconds and 51.9 Mi memory
2023-07-05 13:44:09.600394: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/67f7/f97e/tmpqzug5fti/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p"
2023-07-05 13:44:09.600778: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e9ae/d35c/tmpnj854krs/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p"
2023-07-05 13:44:09.603538: Running the command: "cactus_analyseAssembly HG03492.1.sanitized.fa"
2023-07-05 13:44:09.606752: Running the command: "cactus_analyseAssembly HG02572.1.sanitized.fa"
2023-07-05 13:44:09.609711: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/45a9/26a5/tmppemnpqdk/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p"
2023-07-05 13:44:09.610517: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/cf3c/c22e/tmp_lwduuvl/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-05 13:44:09.616407: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/d742/a34b/tmptpo92o_o/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p"
2023-07-05 13:44:09.621811: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/ecf9/0360/tmpvyg84fev/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p"
2023-07-05 13:44:09.625259: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/e5f6/8879/tmpm9r1fk_u/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p'" in 1.3745 seconds and 154.0 Mi memory
2023-07-05 13:44:09.625702: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/eb21/6857/tmplkiqrmed/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p"
2023-07-05 13:44:09.627566: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e74e/513b/tmp1l5s5i4k/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p"
2023-07-05 13:44:09.628621: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/06dc/2e07/tmphff1i3u2/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p"
2023-07-05 13:44:09.631379: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/59a5/3a5f/tmpjpluc07c/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p"
2023-07-05 13:44:09.632676: Running the command: "cactus_analyseAssembly HG01361.1.sanitized.fa"
2023-07-05 13:44:09.633703: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/4b9e/9ff1/tmp42lwmuar/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p"
2023-07-05 13:44:09.635420: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/f010/5281/tmpsfuaihut/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p"
2023-07-05 13:44:09.641737: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/b41a/5b41/tmpd6kpfdm_/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p"
2023-07-05 13:44:09.643408: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/b868/f507/tmpi8n1e19m/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p"
2023-07-05 13:44:09.645975: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/6ed0/e66c/tmpcgg4p_y_/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p"
2023-07-05 13:44:09.647591: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/a90d/9829/tmpfo5e50y7/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-05 13:44:09.647916: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/708b/3c2a/tmp26oslteo/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p"
2023-07-05 13:44:09.651200: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/1ee1/08ab/tmphq0g_gsq/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-05 13:44:09.653333: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/f7c8/d937/tmp4kb7s75c/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p"
2023-07-05 13:44:09.654182: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/c47c/a7e2/tmpt7hzop4q/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p"
2023-07-05 13:44:09.654866: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/6262/3912/tmp_qnmbtpb/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p"
2023-07-05 13:44:09.656133: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/0d06/cf42/tmpz1vu79yb/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p"
2023-07-05 13:44:10.178952: Successfully ran: "cactus_analyseAssembly HG03453.1.sanitized.fa" in 0.6045 seconds and 24.5 Mi memory
2023-07-05 13:44:10.194307: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 0.6835 seconds and 20.4 Mi memory
2023-07-05 13:44:10.202400: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/2909/5a6e/tmpc3wcgoyr/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p"
2023-07-05 13:44:10.203340: Successfully ran: "cactus_analyseAssembly HG02630.1.sanitized.fa" in 0.6631 seconds and 17.8 Mi memory
2023-07-05 13:44:10.203685: Successfully ran: "cactus_analyseAssembly HG01952.2.sanitized.fa" in 0.7369 seconds and 51.8 Mi memory
2023-07-05 13:44:10.205102: Successfully ran: "cactus_analyseAssembly HG03486.2.sanitized.fa" in 0.7053 seconds and 24.0 Mi memory
2023-07-05 13:44:10.207782: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 0.7041 seconds and 51.8 Mi memory
2023-07-05 13:44:10.208404: Successfully ran: "cactus_analyseAssembly HG01978.2.sanitized.fa" in 0.6967 seconds and 51.8 Mi memory
2023-07-05 13:44:10.208590: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 0.6781 seconds and 25.0 Mi memory
2023-07-05 13:44:10.211177: Successfully ran: "cactus_analyseAssembly HG01358.2.sanitized.fa" in 0.7013 seconds and 51.8 Mi memory
2023-07-05 13:44:10.212672: Successfully ran: "cactus_analyseAssembly HG01952.1.sanitized.fa" in 0.6998 seconds and 51.8 Mi memory
2023-07-05 13:44:10.214999: Successfully ran: "cactus_analyseAssembly HG02622.2.sanitized.fa" in 0.6847 seconds and 51.8 Mi memory
2023-07-05 13:44:10.215672: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 0.6757 seconds and 26.3 Mi memory
2023-07-05 13:44:10.215764: Successfully ran: "cactus_analyseAssembly HG03540.2.sanitized.fa" in 0.6878 seconds and 51.9 Mi memory
2023-07-05 13:44:10.216565: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 0.6972 seconds and 51.8 Mi memory
2023-07-05 13:44:10.217120: Successfully ran: "cactus_analyseAssembly HG00733.1.sanitized.fa" in 0.764 seconds and 51.8 Mi memory
2023-07-05 13:44:10.217393: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 0.6897 seconds and 20.4 Mi memory
2023-07-05 13:44:10.217748: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 0.7348 seconds and 51.8 Mi memory
2023-07-05 13:44:10.220498: Successfully ran: "cactus_analyseAssembly HG01243.1.sanitized.fa" in 0.6963 seconds and 51.9 Mi memory
2023-07-05 13:44:10.221901: Successfully ran: "cactus_analyseAssembly HG01123.1.sanitized.fa" in 0.6718 seconds and 51.8 Mi memory
2023-07-05 13:44:10.222022: Successfully ran: "cactus_analyseAssembly HG00735.1.sanitized.fa" in 0.6972 seconds and 51.8 Mi memory
2023-07-05 13:44:10.222268: Successfully ran: "cactus_analyseAssembly HG01928.1.sanitized.fa" in 0.7371 seconds and 51.8 Mi memory
2023-07-05 13:44:10.222576: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 0.6748 seconds and 51.9 Mi memory
2023-07-05 13:44:10.223461: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 0.6738 seconds and 51.8 Mi memory
2023-07-05 13:44:10.225999: Successfully ran: "cactus_analyseAssembly HG02055.1.sanitized.fa" in 0.6926 seconds and 51.8 Mi memory
2023-07-05 13:44:10.225989: Successfully ran: "cactus_analyseAssembly HG02055.2.sanitized.fa" in 0.6993 seconds and 51.9 Mi memory
2023-07-05 13:44:10.230236: Successfully ran: "cactus_analyseAssembly HG02572.2.sanitized.fa" in 0.6729 seconds and 24.8 Mi memory
2023-07-05 13:44:10.233518: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 0.7586 seconds and 51.8 Mi memory
2023-07-05 13:44:10.233699: Successfully ran: "cactus_analyseAssembly HG01891.1.sanitized.fa" in 0.6765 seconds and 51.8 Mi memory
2023-07-05 13:44:10.235226: Successfully ran: "cactus_analyseAssembly HG02486.1.sanitized.fa" in 0.6587 seconds and 51.8 Mi memory
2023-07-05 13:44:10.237024: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 0.6326 seconds and 51.9 Mi memory
2023-07-05 13:44:10.237715: Successfully ran: "cactus_analyseAssembly HG01071.2.sanitized.fa" in 0.6801 seconds and 51.8 Mi memory
2023-07-05 13:44:10.238715: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 0.6892 seconds and 51.8 Mi memory
2023-07-05 13:44:10.241033: Successfully ran: "cactus_analyseAssembly HG00735.2.sanitized.fa" in 0.6938 seconds and 51.9 Mi memory
2023-07-05 13:44:10.241859: Successfully ran: "cactus_analyseAssembly HG01358.1.sanitized.fa" in 0.6913 seconds and 51.9 Mi memory
2023-07-05 13:44:10.241919: Successfully ran: "cactus_analyseAssembly HG00438.1.sanitized.fa" in 0.6491 seconds and 51.8 Mi memory
2023-07-05 13:44:10.243409: Successfully ran: "cactus_analyseAssembly HG00741.2.sanitized.fa" in 0.6926 seconds and 51.8 Mi memory
2023-07-05 13:44:10.245533: Successfully ran: "cactus_analyseAssembly HG02886.2.sanitized.fa" in 0.7669 seconds and 51.9 Mi memory
2023-07-05 13:44:10.248693: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 0.685 seconds and 51.8 Mi memory
2023-07-05 13:44:10.251857: Successfully ran: "cactus_analyseAssembly HG02257.2.sanitized.fa" in 0.6921 seconds and 51.8 Mi memory
2023-07-05 13:44:10.257759: Successfully ran: "cactus_analyseAssembly NA18906.1.sanitized.fa" in 0.719 seconds and 51.9 Mi memory
2023-07-05 13:44:10.291672: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 0.9309 seconds and 57.5 Mi memory
2023-07-05 13:44:10.337240: Successfully ran: "cactus_analyseAssembly HG01978.2.sanitized.fa" in 0.9428 seconds and 72.2 Mi memory
2023-07-05 13:44:10.358126: Successfully ran: "cactus_analyseAssembly HG01175.2.sanitized.fa" in 0.9399 seconds and 66.3 Mi memory
2023-07-05 13:44:10.416973: Successfully ran: "cactus_analyseAssembly HG02257.2.sanitized.fa" in 0.9855 seconds and 153.9 Mi memory
2023-07-05 13:44:10.461168: Successfully ran: "cactus_analyseAssembly HG01978.1.sanitized.fa" in 0.9308 seconds and 58.0 Mi memory
2023-07-05 13:44:10.498741: Successfully ran: "cactus_analyseAssembly HG02559.1.sanitized.fa" in 0.9457 seconds and 54.4 Mi memory
2023-07-05 13:44:10.512018: Successfully ran: "cactus_analyseAssembly HG02055.2.sanitized.fa" in 0.9341 seconds and 54.4 Mi memory
2023-07-05 13:44:10.515428: Successfully ran: "cactus_analyseAssembly HG00741.2.sanitized.fa" in 0.9448 seconds and 77.1 Mi memory
2023-07-05 13:44:10.568611: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 0.9611 seconds and 153.9 Mi memory
2023-07-05 13:44:10.618880: Successfully ran: "cactus_analyseAssembly HG01361.1.sanitized.fa" in 0.9854 seconds and 153.9 Mi memory
2023-07-05 13:44:10.737491: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/75ea/e1d6/tmp_s5ayzgs/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
2023-07-05 13:44:10.747464: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/a115/944c/tmp_3u71d8r/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
2023-07-05 13:44:10.769495: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0116/bb19/tmp843jp5ya/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p"
2023-07-05 13:44:10.771870: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0c4a/4582/tmptwyfjrwh/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p"
2023-07-05 13:44:10.778277: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/c3c4/5eb2/tmpq_aqyilp/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p"
2023-07-05 13:44:10.797260: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/cba7/1c89/tmpqvlsq6li/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p"
2023-07-05 13:44:10.800008: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/e7fb/2771/tmpsz71dy9e/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p"
2023-07-05 13:44:10.801892: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/bac6/1e40/tmpak75s6zz/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p"
2023-07-05 13:44:10.802387: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/a01b/b1c3/tmppf2xjzwo/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p"
2023-07-05 13:44:10.805177: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/4c7c/f269/tmpc9v9cpuo/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
2023-07-05 13:44:10.810359: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/0bec/e336/tmplutvrh3c/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p"
2023-07-05 13:44:10.810264: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/503b/4c07/tmpxu2oz5_l/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p"
2023-07-05 13:44:10.814289: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/a94e/7f99/tmph65_7yfb/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p"
2023-07-05 13:44:10.820863: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/a99c/1309/tmpjz0nchq3/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-05 13:44:10.823168: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/960e/c284/tmpd7urh4v2/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p"
2023-07-05 13:44:10.824924: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/336c/f5aa/tmpjqz73c0e/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p"
2023-07-05 13:44:10.827325: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/a273/c8e5/tmp70qxrg_n/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p"
2023-07-05 13:44:10.828690: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/a914/f40c/tmpbqgo_e3n/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p"
2023-07-05 13:44:10.829220: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/454c/6684/tmpmekaxhul/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p"
2023-07-05 13:44:10.830938: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/47cd/5ea3/tmpcjfmuv9e/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
2023-07-05 13:44:10.836160: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/35f9/5ee1/tmpt9u760sx/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-05 13:44:10.836212: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/6863/adc1/tmpazpp2cfi/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p"
2023-07-05 13:44:10.844153: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/2e0c/40ea/tmppp7kg13v/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-05 13:44:10.844392: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/9a8e/f32a/tmpn80e_fzo/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p"
2023-07-05 13:44:10.846276: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/fe84/8bb1/tmpl6rs4pmi/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p"
2023-07-05 13:44:10.855134: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/ea79/0ecb/tmp7m9yriw5/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p"
2023-07-05 13:44:10.856225: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/c609/7101/tmpg1u6g8jz/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p"
2023-07-05 13:44:10.870102: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/35e2/aea4/tmpqj9kvlt2/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p"
2023-07-05 13:44:10.879894: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/5862/6699/tmp7zn5yqp8/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p"
2023-07-05 13:44:10.882080: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/44ec/d27d/tmp58lodkbp/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p"
2023-07-05 13:44:10.886474: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/8b91/c3e0/tmp81tea51u/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p"
2023-07-05 13:44:10.895967: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/e6f5/2cc4/tmpe2u005b8/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p"
2023-07-05 13:44:10.896886: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/f14e/16e0/tmpjnc2qoes/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p"
2023-07-05 13:44:10.899046: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/96db/ba4f/tmpgxuwbuxm/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p"
2023-07-05 13:44:10.911818: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/cdec/79a5/tmpyspbojlv/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p"
2023-07-05 13:44:10.911894: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/16a0/e28c/tmpu4__wgh6/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
2023-07-05 13:44:10.912974: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/7e9e/a24e/tmp5qfrroq5/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p"
2023-07-05 13:44:10.922779: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/360c/ac9c/tmpbg3j1dk0/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p"
2023-07-05 13:44:10.928469: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/1a85/c614/tmpo1owq_37/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p"
2023-07-05 13:44:10.928796: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/170d/6f06/tmp6kydsy99/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p"
2023-07-05 13:44:10.929096: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/d4fb/2782/tmpvbm81xc2/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p"
2023-07-05 13:44:10.932796: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/9a08/e7f0/tmpcgjzai7m/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p"
2023-07-05 13:44:10.933922: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/8449/8334/tmpoxu88eg3/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p"
2023-07-05 13:44:10.939624: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/e9da/5ad5/tmp6p0_ihx6/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
2023-07-05 13:44:10.939879: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/d37f/367a/tmp8glxx8he/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p"
2023-07-05 13:44:10.942754: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/4fbf/adc4/tmp1qdflpxg/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p"
2023-07-05 13:44:10.943014: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/a6b2/3906/tmpjh4kxrsl/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p"
2023-07-05 13:44:10.945245: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/3615/52fb/tmp9yy2elgh/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-05 13:44:10.947636: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/c69f/8354/tmp_h2v9avp/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p"
2023-07-05 13:44:10.948596: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/ded5/deea/tmphbgirx5p/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p"
2023-07-05 13:44:10.950696: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/3020/0e13/tmpdq_av_ir/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p"
2023-07-05 13:44:10.951538: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/8a3c/caca/tmpz39bqijg/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p"
2023-07-05 13:44:10.951303: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/f7d1/9ce0/tmpr0thp3cw/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p"
2023-07-05 13:44:10.952199: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/dc3d/9f8f/tmpq20rex6l/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p"
2023-07-05 13:44:10.953785: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/358c/268a/tmpba119ave/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p"
2023-07-05 13:44:10.954904: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/1501/7d5d/tmp4px2nnom/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p"
2023-07-05 13:44:10.955474: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/f927/0c69/tmpuafgqyor/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-05 13:44:10.958758: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/69fc/e65a/tmpa5v21qcg/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-05 13:44:10.962496: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/5e16/702a/tmpt6qyrlwa/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p"
2023-07-05 13:44:10.965793: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/17f1/feb5/tmpdb7k7em1/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p"
2023-07-05 13:44:10.978966: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/f7f2/e5fd/tmppkqoangx/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p"
2023-07-05 13:44:10.989712: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/e1c9/4ce1/tmpg39kom90/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p"
2023-07-05 13:44:10.990786: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/7592/2ed2/tmp7c56_np6/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p"
2023-07-05 13:44:10.991456: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0eca/1090/tmpr726mejz/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p"
2023-07-05 13:44:10.992656: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4c92/81e5/tmpgpeza_ah/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p"
2023-07-05 13:44:10.994413: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/ec4d/4ad3/tmptin3hi__/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-05 13:44:10.995090: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/ebe0/1274/tmp4a4u3p21/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p"
2023-07-05 13:44:10.995382: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b411/6e97/tmpynjmmxxu/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p"
2023-07-05 13:44:10.998819: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/6180/1d82/tmp92hkk5b6/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:44:10.998903: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/95b8/707e/tmpgi7_rwvo/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p"
2023-07-05 13:44:11.002011: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/d704/68ef/tmp1e3dpgnz/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p"
2023-07-05 13:44:11.005360: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/80af/1e73/tmpk9rcg81z/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p"
2023-07-05 13:44:11.008495: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/67ae/159b/tmpv10erftm/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
2023-07-05 13:44:11.018501: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/c08f/8ecf/tmpwzg8f1ih/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p"
2023-07-05 13:44:11.020641: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/9dca/4def/tmpwxf58c4v/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p"
2023-07-05 13:44:11.026384: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/79a4/9d00/tmp31q9r6p9/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:44:11.040087: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/5ea1/7e57/tmpxhecutzy/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p"
2023-07-05 13:44:11.040295: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/82de/d908/tmpija55c4o/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p"
2023-07-05 13:44:11.042207: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/47b5/a2fe/tmphajcq36m/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p"
2023-07-05 13:44:11.047338: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/83ca/4e55/tmpq4jgxljc/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
2023-07-05 13:44:11.049986: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/ccdf/3c78/tmp0c6eqx4y/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
2023-07-05 13:44:11.056625: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/16d2/681c/tmpqz57ppft/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
2023-07-05 13:44:11.058127: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/6d69/0ad4/tmp76w1zdgx/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p"
2023-07-05 13:44:11.063186: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/dcbf/2ca9/tmpt_4p1c6s/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p"
2023-07-05 13:44:11.063912: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/7b1b/1e33/tmp4l5cr3vj/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p"
2023-07-05 13:44:11.066445: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4c17/65c4/tmpfmpvezcx/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p"
2023-07-05 13:44:11.101642: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/8fdc/4783/tmpqrbfk8cb/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p"
2023-07-05 13:44:11.110197: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/ae52/5cef/tmp7sor3fc5/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
2023-07-05 13:44:11.552741: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/06dc/2e07/tmphff1i3u2/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p'" in 1.9228 seconds and 23.8 Mi memory
2023-07-05 13:44:11.557742: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/dcd2/07dd/tmp6ex424f3/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p'" in 2.0038 seconds and 24.7 Mi memory
2023-07-05 13:44:11.558503: Running the command: "cactus_analyseAssembly HG02109.1.sanitized.fa"
2023-07-05 13:44:11.563272: Running the command: "cactus_analyseAssembly HG02723.2.sanitized.fa"
2023-07-05 13:44:11.578425: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/ecf9/0360/tmpvyg84fev/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p'" in 1.9555 seconds and 51.9 Mi memory
2023-07-05 13:44:11.585184: Running the command: "cactus_analyseAssembly HG02080.1.sanitized.fa"
2023-07-05 13:44:11.594269: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/708b/3c2a/tmp26oslteo/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p'" in 1.9452 seconds and 60.1 Mi memory
2023-07-05 13:44:11.596569: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/a90d/9829/tmpfo5e50y7/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p'" in 1.9479 seconds and 51.9 Mi memory
2023-07-05 13:44:11.599771: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/f7c8/d937/tmp4kb7s75c/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p'" in 1.9453 seconds and 51.9 Mi memory
2023-07-05 13:44:11.599935: Running the command: "cactus_analyseAssembly HG00741.1.sanitized.fa"
2023-07-05 13:44:11.602386: Running the command: "cactus_analyseAssembly HG03516.2.sanitized.fa"
2023-07-05 13:44:11.605374: Running the command: "cactus_analyseAssembly HG01109.2.sanitized.fa"
2023-07-05 13:44:11.606467: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/b868/f507/tmpi8n1e19m/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p'" in 1.9618 seconds and 62.9 Mi memory
2023-07-05 13:44:11.607612: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/b41a/5b41/tmpd6kpfdm_/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p'" in 1.9648 seconds and 51.9 Mi memory
2023-07-05 13:44:11.607842: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/4b9e/9ff1/tmp42lwmuar/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p'" in 1.9731 seconds and 51.8 Mi memory
2023-07-05 13:44:11.609257: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/2909/5a6e/tmpc3wcgoyr/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p'" in 1.4056 seconds and 51.9 Mi memory
2023-07-05 13:44:11.611873: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e74e/513b/tmp1l5s5i4k/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p'" in 1.9832 seconds and 63.5 Mi memory
2023-07-05 13:44:11.612028: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/59a5/3a5f/tmpjpluc07c/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p'" in 1.9795 seconds and 69.8 Mi memory
2023-07-05 13:44:11.612658: Running the command: "cactus_analyseAssembly NA18906.2.sanitized.fa"
2023-07-05 13:44:11.613100: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/eb21/6857/tmplkiqrmed/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p'" in 1.9863 seconds and 51.8 Mi memory
2023-07-05 13:44:11.613475: Running the command: "cactus_analyseAssembly HG02886.1.sanitized.fa"
2023-07-05 13:44:11.613601: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/d742/a34b/tmptpo92o_o/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p'" in 1.9961 seconds and 69.8 Mi memory
2023-07-05 13:44:11.614355: Running the command: "cactus_analyseAssembly HG01358.1.sanitized.fa"
2023-07-05 13:44:11.616298: Running the command: "cactus_analyseAssembly HG02109.1.sanitized.fa"
2023-07-05 13:44:11.616733: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/6ed0/e66c/tmpcgg4p_y_/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p'" in 1.9697 seconds and 51.9 Mi memory
2023-07-05 13:44:11.617642: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/0d06/cf42/tmpz1vu79yb/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p'" in 1.9603 seconds and 61.6 Mi memory
2023-07-05 13:44:11.617741: Running the command: "cactus_analyseAssembly HG00741.2.sanitized.fa"
2023-07-05 13:44:11.617795: Running the command: "cactus_analyseAssembly HG01978.1.sanitized.fa"
2023-07-05 13:44:11.618740: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/67f7/f97e/tmpqzug5fti/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p'" in 2.0171 seconds and 71.0 Mi memory
2023-07-05 13:44:11.618972: Running the command: "cactus_analyseAssembly HG02145.2.sanitized.fa"
2023-07-05 13:44:11.619880: Running the command: "cactus_analyseAssembly HG03098.1.sanitized.fa"
2023-07-05 13:44:11.620773: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/a3b3/5239/tmp8dox3_7i/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p'" in 2.0436 seconds and 51.9 Mi memory
2023-07-05 13:44:11.622044: Running the command: "cactus_analyseAssembly HG02717.2.sanitized.fa"
2023-07-05 13:44:11.622389: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/cf3c/c22e/tmp_lwduuvl/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p'" in 2.0108 seconds and 52.1 Mi memory
2023-07-05 13:44:11.623660: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/1ee1/08ab/tmphq0g_gsq/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p'" in 1.9713 seconds and 53.7 Mi memory
2023-07-05 13:44:11.623900: Running the command: "cactus_analyseAssembly HG02559.2.sanitized.fa"
2023-07-05 13:44:11.625361: Running the command: "cactus_analyseAssembly HG01891.1.sanitized.fa"
2023-07-05 13:44:11.626488: Running the command: "cactus_analyseAssembly NA20129.1.sanitized.fa"
2023-07-05 13:44:11.628333: Running the command: "cactus_analyseAssembly HG01175.2.sanitized.fa"
2023-07-05 13:44:11.629635: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e9ae/d35c/tmpnj854krs/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p'" in 2.0275 seconds and 71.7 Mi memory
2023-07-05 13:44:11.630211: Running the command: "cactus_analyseAssembly HG00733.1.sanitized.fa"
2023-07-05 13:44:11.635141: Running the command: "cactus_analyseAssembly HG01358.2.sanitized.fa"
2023-07-05 13:44:11.635829: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/6262/3912/tmp_qnmbtpb/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p'" in 1.9798 seconds and 51.9 Mi memory
2023-07-05 13:44:11.641532: Running the command: "cactus_analyseAssembly HG03453.1.sanitized.fa"
2023-07-05 13:44:11.650179: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/c47c/a7e2/tmpt7hzop4q/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p'" in 1.9949 seconds and 153.9 Mi memory
2023-07-05 13:44:11.653871: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/45a9/26a5/tmppemnpqdk/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p'" in 2.043 seconds and 153.9 Mi memory
2023-07-05 13:44:11.655780: Running the command: "cactus_analyseAssembly HG01891.2.sanitized.fa"
2023-07-05 13:44:11.656040: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/caca/d444/tmpkqjs0q12/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p'" in 2.092 seconds and 153.9 Mi memory
2023-07-05 13:44:11.659715: Running the command: "cactus_analyseAssembly HG02055.1.sanitized.fa"
2023-07-05 13:44:11.661046: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/f010/5281/tmpsfuaihut/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p'" in 2.0245 seconds and 154.0 Mi memory
2023-07-05 13:44:11.661900: Running the command: "cactus_analyseAssembly HG01106.1.sanitized.fa"
2023-07-05 13:44:11.666335: Running the command: "cactus_analyseAssembly HG02886.2.sanitized.fa"
2023-07-05 13:44:11.672644: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/cba7/1c89/tmpqvlsq6li/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p'" in 0.874 seconds and 51.9 Mi memory
2023-07-05 13:44:11.673555: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/a94e/7f99/tmph65_7yfb/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p'" in 0.8578 seconds and 51.9 Mi memory
2023-07-05 13:44:11.674448: Running the command: "cactus_analyseAssembly HG03516.1.sanitized.fa"
2023-07-05 13:44:11.676102: Running the command: "cactus_analyseAssembly HG01891.2.sanitized.fa"
2023-07-05 13:44:11.677789: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/96db/ba4f/tmpgxuwbuxm/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p'" in 0.7776 seconds and 17.9 Mi memory
2023-07-05 13:44:11.679011: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/e7fb/2771/tmpsz71dy9e/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p'" in 0.8775 seconds and 17.9 Mi memory
2023-07-05 13:44:11.679565: Running the command: "cactus_analyseAssembly HG02630.2.sanitized.fa"
2023-07-05 13:44:11.681119: Running the command: "cactus_analyseAssembly HG03492.2.sanitized.fa"
2023-07-05 13:44:11.684415: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/a01b/b1c3/tmppf2xjzwo/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p'" in 0.8806 seconds and 51.9 Mi memory
2023-07-05 13:44:11.685726: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/cdec/79a5/tmpyspbojlv/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p'" in 0.7722 seconds and 17.9 Mi memory
2023-07-05 13:44:11.686059: Running the command: "cactus_analyseAssembly HG02109.1.sanitized.fa"
2023-07-05 13:44:11.686594: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/336c/f5aa/tmpjqz73c0e/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p'" in 0.8602 seconds and 24.3 Mi memory
2023-07-05 13:44:11.687566: Running the command: "cactus_analyseAssembly HG03579.1.sanitized.fa"
2023-07-05 13:44:11.689219: Running the command: "cactus_analyseAssembly HG01258.2.sanitized.fa"
2023-07-05 13:44:11.697866: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0eca/1090/tmpr726mejz/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p'" in 0.7047 seconds and 25.9 Mi memory
2023-07-05 13:44:11.700039: Running the command: "cactus_analyseAssembly HG02080.1.sanitized.fa"
2023-07-05 13:44:11.700621: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/44ec/d27d/tmp58lodkbp/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p'" in 0.8174 seconds and 51.9 Mi memory
2023-07-05 13:44:11.701021: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0c4a/4582/tmptwyfjrwh/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p'" in 0.9277 seconds and 23.5 Mi memory
2023-07-05 13:44:11.701296: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/c609/7101/tmpg1u6g8jz/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p'" in 0.8437 seconds and 51.9 Mi memory
2023-07-05 13:44:11.701713: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/fe84/8bb1/tmpl6rs4pmi/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p'" in 0.854 seconds and 51.8 Mi memory
2023-07-05 13:44:11.701966: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/a99c/1309/tmpjz0nchq3/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p'" in 0.8796 seconds and 51.9 Mi memory
2023-07-05 13:44:11.702668: Running the command: "cactus_analyseAssembly HG00741.1.sanitized.fa"
2023-07-05 13:44:11.703247: Running the command: "cactus_analyseAssembly HG01928.2.sanitized.fa"
2023-07-05 13:44:11.703257: Running the command: "cactus_analyseAssembly HG01361.1.sanitized.fa"
2023-07-05 13:44:11.703905: Running the command: "cactus_analyseAssembly HG01978.1.sanitized.fa"
2023-07-05 13:44:11.704603: Running the command: "cactus_analyseAssembly HG00621.1.sanitized.fa"
2023-07-05 13:44:11.706847: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/35e2/aea4/tmpqj9kvlt2/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p'" in 0.8354 seconds and 51.9 Mi memory
2023-07-05 13:44:11.708432: Running the command: "cactus_analyseAssembly HG02559.1.sanitized.fa"
2023-07-05 13:44:11.708831: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/17f1/feb5/tmpdb7k7em1/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p'" in 0.7419 seconds and 24.2 Mi memory
2023-07-05 13:44:11.710890: Running the command: "cactus_analyseAssembly HG02145.2.sanitized.fa"
2023-07-05 13:44:11.710881: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/f7d1/9ce0/tmpr0thp3cw/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p'" in 0.7584 seconds and 51.9 Mi memory
2023-07-05 13:44:11.712936: Running the command: "cactus_analyseAssembly HG03540.1.sanitized.fa"
2023-07-05 13:44:11.715305: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0116/bb19/tmp843jp5ya/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p'" in 0.9442 seconds and 51.9 Mi memory
2023-07-05 13:44:11.716391: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/47cd/5ea3/tmpcjfmuv9e/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p'" in 0.8841 seconds and 51.9 Mi memory
2023-07-05 13:44:11.716936: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/6d69/0ad4/tmp76w1zdgx/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 0.6576 seconds and 17.9 Mi memory
2023-07-05 13:44:11.717136: Running the command: "cactus_analyseAssembly NA20129.1.sanitized.fa"
2023-07-05 13:44:11.718306: Running the command: "cactus_analyseAssembly HG00621.2.sanitized.fa"
2023-07-05 13:44:11.718934: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
2023-07-05 13:44:11.720608: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/69fc/e65a/tmpa5v21qcg/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p'" in 0.7607 seconds and 51.9 Mi memory
2023-07-05 13:44:11.722450: Running the command: "cactus_analyseAssembly HG01175.2.sanitized.fa"
2023-07-05 13:44:11.723396: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/16d2/681c/tmpqz57ppft/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p'" in 0.6656 seconds and 7.1 Mi memory
2023-07-05 13:44:11.723396: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/d704/68ef/tmp1e3dpgnz/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p'" in 0.72 seconds and 51.9 Mi memory
2023-07-05 13:44:11.725408: Running the command: "cactus_analyseAssembly HG01361.2.sanitized.fa"
2023-07-05 13:44:11.726006: Running the command: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa"
2023-07-05 13:44:11.730375: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/16a0/e28c/tmpu4__wgh6/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p'" in 0.817 seconds and 51.9 Mi memory
2023-07-05 13:44:11.731270: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/82de/d908/tmpija55c4o/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p'" in 0.6898 seconds and 26.1 Mi memory
2023-07-05 13:44:11.732260: Running the command: "cactus_analyseAssembly HG03486.1.sanitized.fa"
2023-07-05 13:44:11.733312: Running the command: "cactus_analyseAssembly HG02818.1.sanitized.fa"
2023-07-05 13:44:11.735188: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/dcbf/2ca9/tmpt_4p1c6s/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p'" in 0.6709 seconds and 51.9 Mi memory
2023-07-05 13:44:11.737335: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4c92/81e5/tmpgpeza_ah/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p'" in 0.7434 seconds and 23.8 Mi memory
2023-07-05 13:44:11.737556: Running the command: "cactus_analyseAssembly HG01071.1.sanitized.fa"
2023-07-05 13:44:11.737890: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/503b/4c07/tmpxu2oz5_l/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p'" in 0.9262 seconds and 51.9 Mi memory
2023-07-05 13:44:11.739329: Running the command: "cactus_analyseAssembly HG02148.1.sanitized.fa"
2023-07-05 13:44:11.740417: Running the command: "cactus_analyseAssembly HG02257.1.sanitized.fa"
2023-07-05 13:44:11.740930: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/f7f2/e5fd/tmppkqoangx/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p'" in 0.7606 seconds and 51.9 Mi memory
2023-07-05 13:44:11.742850: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
2023-07-05 13:44:11.744920: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b411/6e97/tmpynjmmxxu/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 0.748 seconds and 51.9 Mi memory
2023-07-05 13:44:11.746099: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/47b5/a2fe/tmphajcq36m/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p'" in 0.7028 seconds and 17.9 Mi memory
2023-07-05 13:44:11.746840: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-05 13:44:11.746960: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/6180/1d82/tmp92hkk5b6/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p'" in 0.747 seconds and 51.9 Mi memory
2023-07-05 13:44:11.748008: Running the command: "cactus_analyseAssembly HG02886.1.sanitized.fa"
2023-07-05 13:44:11.749083: Running the command: "cactus_analyseAssembly HG02145.1.sanitized.fa"
2023-07-05 13:44:11.750844: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/a6b2/3906/tmpjh4kxrsl/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p'" in 0.8064 seconds and 51.9 Mi memory
2023-07-05 13:44:11.751274: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/5e16/702a/tmpt6qyrlwa/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p'" in 0.7874 seconds and 51.9 Mi memory
2023-07-05 13:44:11.752083: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/ccdf/3c78/tmp0c6eqx4y/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p'" in 0.701 seconds and 51.9 Mi memory
2023-07-05 13:44:11.752640: Running the command: "cactus_analyseAssembly NA18906.2.sanitized.fa"
2023-07-05 13:44:11.753091: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/ec4d/4ad3/tmptin3hi__/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p'" in 0.7573 seconds and 51.9 Mi memory
2023-07-05 13:44:11.753198: Running the command: "cactus_analyseAssembly HG01175.1.sanitized.fa"
2023-07-05 13:44:11.754294: Running the command: "cactus_analyseAssembly HG01123.2.sanitized.fa"
2023-07-05 13:44:11.754804: Running the command: "cactus_analyseAssembly HG01258.1.sanitized.fa"
2023-07-05 13:44:11.755773: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/c08f/8ecf/tmpwzg8f1ih/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p'" in 0.7358 seconds and 24.6 Mi memory
2023-07-05 13:44:11.756011: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/ebe0/1274/tmp4a4u3p21/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p'" in 0.7597 seconds and 51.9 Mi memory
2023-07-05 13:44:11.757823: Running the command: "cactus_analyseAssembly NA21309.2.sanitized.fa"
2023-07-05 13:44:11.758075: Running the command: "cactus_analyseAssembly HG03579.2.sanitized.fa"
2023-07-05 13:44:11.760840: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/7e9e/a24e/tmp5qfrroq5/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p'" in 0.8467 seconds and 51.9 Mi memory
2023-07-05 13:44:11.760970: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4c17/65c4/tmpfmpvezcx/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p'" in 0.6932 seconds and 17.9 Mi memory
2023-07-05 13:44:11.762629: Running the command: "cactus_analyseAssembly HG01243.2.sanitized.fa"
2023-07-05 13:44:11.762770: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/7592/2ed2/tmp7c56_np6/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p'" in 0.7709 seconds and 51.9 Mi memory
2023-07-05 13:44:11.763262: Running the command: "cactus_analyseAssembly HG02717.2.sanitized.fa"
2023-07-05 13:44:11.764463: Running the command: "cactus_analyseAssembly HG01106.1.sanitized.fa"
2023-07-05 13:44:11.764392: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/8fdc/4783/tmpqrbfk8cb/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p'" in 0.6615 seconds and 22.0 Mi memory
2023-07-05 13:44:11.766155: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/e1c9/4ce1/tmpg39kom90/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p'" in 0.7751 seconds and 51.9 Mi memory
2023-07-05 13:44:11.766245: Running the command: "cactus_analyseAssembly NA21309.1.sanitized.fa"
2023-07-05 13:44:11.767933: Running the command: "cactus_analyseAssembly HG02622.1.sanitized.fa"
2023-07-05 13:44:11.768844: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/9dca/4def/tmpwxf58c4v/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p'" in 0.7469 seconds and 51.9 Mi memory
2023-07-05 13:44:11.770080: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/80af/1e73/tmpk9rcg81z/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p'" in 0.7636 seconds and 51.9 Mi memory
2023-07-05 13:44:11.770636: Running the command: "cactus_analyseAssembly HG02559.2.sanitized.fa"
2023-07-05 13:44:11.771765: Running the command: "cactus_analyseAssembly HG02486.2.sanitized.fa"
2023-07-05 13:44:11.775490: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/95b8/707e/tmpgi7_rwvo/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p'" in 0.7754 seconds and 51.9 Mi memory
2023-07-05 13:44:11.777126: Running the command: "cactus_analyseAssembly HG03453.2.sanitized.fa"
2023-07-05 13:44:11.779877: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/79a4/9d00/tmp31q9r6p9/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 0.7521 seconds and 51.9 Mi memory
2023-07-05 13:44:11.781546: Running the command: "cactus_analyseAssembly GRCh38.sanitized.fa"
2023-07-05 13:44:11.794347: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/ae52/5cef/tmp7sor3fc5/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p'" in 0.6829 seconds and 51.9 Mi memory
2023-07-05 13:44:11.795396: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/5ea1/7e57/tmpxhecutzy/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p'" in 0.7542 seconds and 51.9 Mi memory
2023-07-05 13:44:11.796221: Running the command: "cactus_analyseAssembly CHM13.sanitized.fa"
2023-07-05 13:44:11.797125: Running the command: "cactus_analyseAssembly NA20129.2.sanitized.fa"
2023-07-05 13:44:11.799043: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/7b1b/1e33/tmp4l5cr3vj/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p'" in 0.734 seconds and 51.9 Mi memory
2023-07-05 13:44:11.800762: Running the command: "cactus_analyseAssembly HG03098.1.sanitized.fa"
2023-07-05 13:44:11.817128: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/67ae/159b/tmpv10erftm/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p'" in 0.8074 seconds and 24.1 Mi memory
2023-07-05 13:44:11.818936: Running the command: "cactus_analyseAssembly HG02717.1.sanitized.fa"
2023-07-05 13:44:11.908769: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/83ca/4e55/tmpq4jgxljc/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p'" in 0.8598 seconds and 51.9 Mi memory
2023-07-05 13:44:11.911868: Running the command: "cactus_analyseAssembly HG00438.2.sanitized.fa"
2023-07-05 13:44:12.079805: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/960e/c284/tmpd7urh4v2/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p'" in 1.2554 seconds and 73.0 Mi memory
2023-07-05 13:44:12.086767: Running the command: "cactus_analyseAssembly HG00741.2.sanitized.fa"
2023-07-05 13:44:12.094040: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/bcdf/09f6/tmpynhgklsi/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p"
2023-07-05 13:44:12.110186: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/c3c4/5eb2/tmpq_aqyilp/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p'" in 1.3305 seconds and 57.6 Mi memory
2023-07-05 13:44:12.116630: Running the command: "cactus_analyseAssembly HG03486.2.sanitized.fa"
2023-07-05 13:44:12.120541: Successfully ran: "cactus_analyseAssembly HG02148.1.sanitized.fa" in 0.3803 seconds and 23.7 Mi memory
2023-07-05 13:44:12.123736: Successfully ran: "cactus_analyseAssembly HG02723.1.sanitized.fa" in 0.3758 seconds and 51.8 Mi memory
2023-07-05 13:44:12.123875: Successfully ran: "cactus_analyseAssembly NA21309.2.sanitized.fa" in 0.365 seconds and 24.5 Mi memory
2023-07-05 13:44:12.126389: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/2e0c/40ea/tmppp7kg13v/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p'" in 1.2809 seconds and 66.9 Mi memory
2023-07-05 13:44:12.127058: Successfully ran: "cactus_analyseAssembly HG02886.1.sanitized.fa" in 0.3781 seconds and 17.8 Mi memory
2023-07-05 13:44:12.127898: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/e9da/5ad5/tmp6p0_ihx6/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p'" in 1.187 seconds and 4.4 Mi memory
2023-07-05 13:44:12.129722: Successfully ran: "cactus_analyseAssembly HG03579.1.sanitized.fa" in 0.4413 seconds and 17.8 Mi memory
2023-07-05 13:44:12.131492: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 0.4412 seconds and 24.2 Mi memory
2023-07-05 13:44:12.131683: Successfully ran: "cactus_analyseAssembly HG01071.1.sanitized.fa" in 0.3932 seconds and 51.8 Mi memory
2023-07-05 13:44:12.131762: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 0.4513 seconds and 17.8 Mi memory
2023-07-05 13:44:12.132374: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/0bec/e336/tmplutvrh3c/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p'" in 1.3207 seconds and 154.0 Mi memory
2023-07-05 13:44:12.132985: Running the command: "cactus_analyseAssembly HG00735.2.sanitized.fa"
2023-07-05 13:44:12.134231: Successfully ran: "cactus_analyseAssembly HG03492.2.sanitized.fa" in 0.4522 seconds and 17.8 Mi memory
2023-07-05 13:44:12.136126: Running the command: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa"
2023-07-05 13:44:12.135825: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 0.4603 seconds and 51.9 Mi memory
2023-07-05 13:44:12.136444: Successfully ran: "cactus_analyseAssembly HG03098.2.sanitized.fa" in 0.3926 seconds and 51.8 Mi memory
2023-07-05 13:44:12.137698: Successfully ran: "cactus_analyseAssembly HG01891.2.sanitized.fa" in 0.4604 seconds and 51.8 Mi memory
2023-07-05 13:44:12.137853: Successfully ran: "cactus_analyseAssembly HG02109.1.sanitized.fa" in 0.4508 seconds and 51.8 Mi memory
2023-07-05 13:44:12.138530: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/a115/944c/tmp_3u71d8r/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p'" in 1.3897 seconds and 54.0 Mi memory
2023-07-05 13:44:12.138466: Successfully ran: "cactus_analyseAssembly HG01361.1.sanitized.fa" in 0.4342 seconds and 23.5 Mi memory
2023-07-05 13:44:12.139097: Running the command: "cactus_analyseAssembly HG01123.1.sanitized.fa"
2023-07-05 13:44:12.138570: Successfully ran: "cactus_analyseAssembly HG02622.1.sanitized.fa" in 0.3696 seconds and 51.8 Mi memory
2023-07-05 13:44:12.139361: Successfully ran: "cactus_analyseAssembly HG02717.2.sanitized.fa" in 0.3751 seconds and 17.8 Mi memory
2023-07-05 13:44:12.139408: Successfully ran: "cactus_analyseAssembly HG03579.2.sanitized.fa" in 0.3805 seconds and 51.8 Mi memory
2023-07-05 13:44:12.140828: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 0.3427 seconds and 51.9 Mi memory
2023-07-05 13:44:12.140940: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 0.363 seconds and 51.9 Mi memory
2023-07-05 13:44:12.145026: Running the command: "cactus_analyseAssembly HG02717.1.sanitized.fa"
2023-07-05 13:44:12.145416: Successfully ran: "cactus_analyseAssembly HG00741.1.sanitized.fa" in 0.4417 seconds and 51.8 Mi memory
2023-07-05 13:44:12.146562: Successfully ran: "cactus_analyseAssembly HG01928.2.sanitized.fa" in 0.4424 seconds and 51.8 Mi memory
2023-07-05 13:44:12.146905: Successfully ran: "cactus_analyseAssembly HG02559.1.sanitized.fa" in 0.4377 seconds and 51.8 Mi memory
2023-07-05 13:44:12.147535: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/ea79/0ecb/tmp7m9yriw5/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p'" in 1.2911 seconds and 56.0 Mi memory
2023-07-05 13:44:12.147848: Successfully ran: "cactus_analyseAssembly HG02257.1.sanitized.fa" in 0.4064 seconds and 51.8 Mi memory
2023-07-05 13:44:12.149501: Successfully ran: "cactus_analyseAssembly HG03540.1.sanitized.fa" in 0.4357 seconds and 51.8 Mi memory
2023-07-05 13:44:12.149487: Successfully ran: "cactus_analyseAssembly NA21309.1.sanitized.fa" in 0.3823 seconds and 21.9 Mi memory
2023-07-05 13:44:12.150576: Successfully ran: "cactus_analyseAssembly NA20129.1.sanitized.fa" in 0.4324 seconds and 51.8 Mi memory
2023-07-05 13:44:12.151292: Successfully ran: "cactus_analyseAssembly HG01175.2.sanitized.fa" in 0.4279 seconds and 51.8 Mi memory
2023-07-05 13:44:12.151258: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 0.4393 seconds and 24.2 Mi memory
2023-07-05 13:44:12.152395: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/e6f5/2cc4/tmpe2u005b8/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 1.2551 seconds and 51.9 Mi memory
2023-07-05 13:44:12.154146: Running the command: "cactus_analyseAssembly HG02257.2.sanitized.fa"
2023-07-05 13:44:12.154233: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/4c7c/f269/tmpc9v9cpuo/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p'" in 1.3475 seconds and 51.9 Mi memory
2023-07-05 13:44:12.154455: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 0.4488 seconds and 51.8 Mi memory
2023-07-05 13:44:12.154812: Successfully ran: "cactus_analyseAssembly HG03486.1.sanitized.fa" in 0.4217 seconds and 51.8 Mi memory
2023-07-05 13:44:12.155549: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 0.4291 seconds and 51.8 Mi memory
2023-07-05 13:44:12.155880: Successfully ran: "cactus_analyseAssembly HG02080.2.sanitized.fa" in 0.4361 seconds and 17.8 Mi memory
2023-07-05 13:44:12.157326: Successfully ran: "cactus_analyseAssembly HG01243.2.sanitized.fa" in 0.3938 seconds and 51.8 Mi memory
2023-07-05 13:44:12.157467: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 0.4383 seconds and 51.8 Mi memory
2023-07-05 13:44:12.158201: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 0.4041 seconds and 51.8 Mi memory
2023-07-05 13:44:12.159328: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-05 13:44:12.160653: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/454c/6684/tmpmekaxhul/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p'" in 1.33 seconds and 65.6 Mi memory
2023-07-05 13:44:12.160760: Running the command: "cactus_analyseAssembly HG02109.2.sanitized.fa"
2023-07-05 13:44:12.163405: Successfully ran: "cactus_analyseAssembly HG02818.1.sanitized.fa" in 0.429 seconds and 26.1 Mi memory
2023-07-05 13:44:12.191906: Successfully ran: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa" in 0.4651 seconds and 7.0 Mi memory
2023-07-05 13:44:12.200689: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/1f9a/f7a2/tmpjtt08m_o/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p"
2023-07-05 13:44:12.201750: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/bac6/1e40/tmpak75s6zz/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p'" in 1.3985 seconds and 51.9 Mi memory
2023-07-05 13:44:12.206637: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/3020/0e13/tmpdq_av_ir/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p'" in 1.2545 seconds and 51.9 Mi memory
2023-07-05 13:44:12.208016: Running the command: "cactus_analyseAssembly HG01175.1.sanitized.fa"
2023-07-05 13:44:12.208511: Successfully ran: "cactus_analyseAssembly CHM13.sanitized.fa" in 0.4114 seconds and 51.8 Mi memory
2023-07-05 13:44:12.211981: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/c3d1/7035/tmpjoicy8u_/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p"
2023-07-05 13:44:12.212757: Running the command: "cactus_analyseAssembly NA21309.1.sanitized.fa"
2023-07-05 13:44:12.214133: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/75ea/e1d6/tmp_s5ayzgs/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p'" in 1.4752 seconds and 153.9 Mi memory
2023-07-05 13:44:12.214693: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/5508/88fe/tmpsyftezur/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-05 13:44:12.215723: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/a914/f40c/tmpbqgo_e3n/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p'" in 1.3857 seconds and 154.0 Mi memory
2023-07-05 13:44:12.216887: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/360c/ac9c/tmpbg3j1dk0/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p'" in 1.2928 seconds and 51.9 Mi memory
2023-07-05 13:44:12.218960: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/6863/adc1/tmpazpp2cfi/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 1.3814 seconds and 51.9 Mi memory
2023-07-05 13:44:12.219534: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/a273/c8e5/tmp70qxrg_n/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p'" in 1.3911 seconds and 154.0 Mi memory
2023-07-05 13:44:12.221263: Running the command: "cactus_analyseAssembly HG01123.2.sanitized.fa"
2023-07-05 13:44:12.223490: Running the command: "cactus_analyseAssembly HG01243.2.sanitized.fa"
2023-07-05 13:44:12.222854: Successfully ran: "cactus_analyseAssembly HG00438.2.sanitized.fa" in 0.3098 seconds and 51.9 Mi memory
2023-07-05 13:44:12.223863: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/9a8e/f32a/tmpn80e_fzo/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p'" in 1.3781 seconds and 51.9 Mi memory
2023-07-05 13:44:12.224864: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/c4c9/2e83/tmpized8jhu/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p"
2023-07-05 13:44:12.226071: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
2023-07-05 13:44:12.226378: Running the command: "cactus_analyseAssembly HG02148.2.sanitized.fa"
2023-07-05 13:44:12.226852: Running the command: "cactus_analyseAssembly HG03540.1.sanitized.fa"
2023-07-05 13:44:12.229113: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0391/cc71/tmpg6b_hxgp/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p"
2023-07-05 13:44:12.229958: Running the command: "cactus_analyseAssembly HG02145.2.sanitized.fa"
2023-07-05 13:44:12.229687: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72b7/91d3/tmpnxyktw95/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-05 13:44:12.230425: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/8a3c/caca/tmpz39bqijg/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p'" in 1.2777 seconds and 51.9 Mi memory
2023-07-05 13:44:12.231719: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/4fbf/adc4/tmp1qdflpxg/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p'" in 1.2877 seconds and 60.9 Mi memory
2023-07-05 13:44:12.234232: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/3e9e/2962/tmpbi7z952k/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p"
2023-07-05 13:44:12.235303: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/71ad/059d/tmpgruwp1sh/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p"
2023-07-05 13:44:12.235856: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/1602/4b44/tmpny1out3o/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p"
2023-07-05 13:44:12.236690: Running the command: "cactus_analyseAssembly NA20129.1.sanitized.fa"
2023-07-05 13:44:12.236032: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/6135/f2cd/tmptug96mq7/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p"
2023-07-05 13:44:12.236490: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/d80a/4607/tmp8puuuh4w/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p"
2023-07-05 13:44:12.237720: Running the command: "cactus_analyseAssembly HG01361.1.sanitized.fa"
2023-07-05 13:44:12.243015: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/8b91/c3e0/tmp81tea51u/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p'" in 1.3553 seconds and 154.0 Mi memory
2023-07-05 13:44:12.245024: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/f14e/16e0/tmpjnc2qoes/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p'" in 1.3468 seconds and 51.9 Mi memory
2023-07-05 13:44:12.249388: Running the command: "cactus_analyseAssembly HG01358.1.sanitized.fa"
2023-07-05 13:44:12.251222: Running the command: "cactus_analyseAssembly HG03540.2.sanitized.fa"
2023-07-05 13:44:12.255535: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/8449/8334/tmpoxu88eg3/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p'" in 1.3203 seconds and 51.9 Mi memory
2023-07-05 13:44:12.258669: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/5862/6699/tmp7zn5yqp8/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p'" in 1.3774 seconds and 153.9 Mi memory
2023-07-05 13:44:12.261679: Running the command: "cactus_analyseAssembly HG02109.1.sanitized.fa"
2023-07-05 13:44:12.263867: Successfully ran: "cactus_analyseAssembly HG02717.1.sanitized.fa" in 0.444 seconds and 24.0 Mi memory
2023-07-05 13:44:12.264680: Running the command: "cactus_analyseAssembly HG01071.2.sanitized.fa"
2023-07-05 13:44:12.270164: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/d4fb/2782/tmpvbm81xc2/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p'" in 1.3399 seconds and 60.2 Mi memory
2023-07-05 13:44:12.276086: Running the command: "cactus_analyseAssembly HG03453.1.sanitized.fa"
2023-07-05 13:44:12.279050: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/170d/6f06/tmp6kydsy99/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p'" in 1.3489 seconds and 51.9 Mi memory
2023-07-05 13:44:12.288898: Running the command: "cactus_analyseAssembly HG02630.2.sanitized.fa"
2023-07-05 13:44:12.290223: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/9a08/e7f0/tmpcgjzai7m/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p'" in 1.3562 seconds and 154.0 Mi memory
2023-07-05 13:44:12.296590: Running the command: "cactus_analyseAssembly HG02622.1.sanitized.fa"
2023-07-05 13:44:12.300267: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/3615/52fb/tmp9yy2elgh/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p'" in 1.3536 seconds and 154.0 Mi memory
2023-07-05 13:44:12.303026: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/358c/268a/tmpba119ave/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p'" in 1.3481 seconds and 51.9 Mi memory
2023-07-05 13:44:12.306522: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/c69f/8354/tmp_h2v9avp/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p'" in 1.3575 seconds and 55.5 Mi memory
2023-07-05 13:44:12.307237: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/dc3d/9f8f/tmpq20rex6l/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p'" in 1.3536 seconds and 51.9 Mi memory
2023-07-05 13:44:12.307711: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/d37f/367a/tmp8glxx8he/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p'" in 1.3667 seconds and 64.8 Mi memory
2023-07-05 13:44:12.309138: Running the command: "cactus_analyseAssembly HG02145.2.sanitized.fa"
2023-07-05 13:44:12.311532: Running the command: "cactus_analyseAssembly HG03516.2.sanitized.fa"
2023-07-05 13:44:12.312605: Running the command: "cactus_analyseAssembly HG02559.2.sanitized.fa"
2023-07-05 13:44:12.313507: Running the command: "cactus_analyseAssembly HG00673.1.sanitized.fa"
2023-07-05 13:44:12.314349: Running the command: "cactus_analyseAssembly HG03579.1.sanitized.fa"
2023-07-05 13:44:12.319094: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/1a85/c614/tmpo1owq_37/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p'" in 1.3893 seconds and 69.7 Mi memory
2023-07-05 13:44:12.324978: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/f927/0c69/tmpuafgqyor/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p'" in 1.3681 seconds and 154.0 Mi memory
2023-07-05 13:44:12.325322: Running the command: "cactus_analyseAssembly HG02080.1.sanitized.fa"
2023-07-05 13:44:12.330254: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/ded5/deea/tmphbgirx5p/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p'" in 1.3803 seconds and 154.0 Mi memory
2023-07-05 13:44:12.330850: Running the command: "cactus_analyseAssembly HG01106.2.sanitized.fa"
2023-07-05 13:44:12.335382: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/1501/7d5d/tmp4px2nnom/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p'" in 1.379 seconds and 154.0 Mi memory
2023-07-05 13:44:12.336517: Running the command: "cactus_analyseAssembly HG01358.2.sanitized.fa"
2023-07-05 13:44:12.345747: Running the command: "cactus_analyseAssembly HG02717.2.sanitized.fa"
2023-07-05 13:44:12.406349: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 0.8421 seconds and 24.8 Mi memory
2023-07-05 13:44:12.407199: Successfully ran: "cactus_analyseAssembly HG02109.1.sanitized.fa" in 0.8476 seconds and 23.8 Mi memory
2023-07-05 13:44:12.450989: Successfully ran: "cactus_analyseAssembly HG02080.1.sanitized.fa" in 0.8648 seconds and 51.9 Mi memory
2023-07-05 13:44:12.454067: Successfully ran: "cactus_analyseAssembly HG02109.1.sanitized.fa" in 0.8368 seconds and 51.9 Mi memory
2023-07-05 13:44:12.479097: Successfully ran: "cactus_analyseAssembly HG00741.1.sanitized.fa" in 0.8781 seconds and 60.1 Mi memory
2023-07-05 13:44:12.480958: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 0.8775 seconds and 51.9 Mi memory
2023-07-05 13:44:12.481070: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 0.8747 seconds and 51.9 Mi memory
2023-07-05 13:44:12.489567: Successfully ran: "cactus_analyseAssembly HG02886.1.sanitized.fa" in 0.8752 seconds and 51.9 Mi memory
2023-07-05 13:44:12.497057: Successfully ran: "cactus_analyseAssembly HG01358.1.sanitized.fa" in 0.8818 seconds and 51.9 Mi memory
2023-07-05 13:44:12.498554: Successfully ran: "cactus_analyseAssembly NA18906.2.sanitized.fa" in 0.8849 seconds and 62.9 Mi memory
2023-07-05 13:44:12.500452: Successfully ran: "cactus_analyseAssembly NA20129.1.sanitized.fa" in 0.8731 seconds and 51.9 Mi memory
2023-07-05 13:44:12.500934: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 0.8812 seconds and 51.9 Mi memory
2023-07-05 13:44:12.503295: Successfully ran: "cactus_analyseAssembly HG00741.2.sanitized.fa" in 0.8847 seconds and 69.9 Mi memory
2023-07-05 13:44:12.505972: Successfully ran: "cactus_analyseAssembly HG03098.1.sanitized.fa" in 0.8851 seconds and 69.9 Mi memory
2023-07-05 13:44:12.506937: Successfully ran: "cactus_analyseAssembly HG01978.1.sanitized.fa" in 0.8881 seconds and 63.5 Mi memory
2023-07-05 13:44:12.507571: Successfully ran: "cactus_analyseAssembly HG02717.2.sanitized.fa" in 0.8845 seconds and 51.9 Mi memory
2023-07-05 13:44:12.511678: Successfully ran: "cactus_analyseAssembly HG02559.2.sanitized.fa" in 0.887 seconds and 61.6 Mi memory
2023-07-05 13:44:12.511967: Successfully ran: "cactus_analyseAssembly HG01175.2.sanitized.fa" in 0.8826 seconds and 52.1 Mi memory
2023-07-05 13:44:12.516043: Successfully ran: "cactus_analyseAssembly HG01891.1.sanitized.fa" in 0.8898 seconds and 70.9 Mi memory
2023-07-05 13:44:12.523385: Successfully ran: "cactus_analyseAssembly HG00733.1.sanitized.fa" in 0.8924 seconds and 53.7 Mi memory
2023-07-05 13:44:12.528566: Successfully ran: "cactus_analyseAssembly HG01358.2.sanitized.fa" in 0.8926 seconds and 71.7 Mi memory
2023-07-05 13:44:12.535505: Successfully ran: "cactus_analyseAssembly HG03453.1.sanitized.fa" in 0.8932 seconds and 51.9 Mi memory
2023-07-05 13:44:12.592022: Successfully ran: "cactus_analyseAssembly HG02055.1.sanitized.fa" in 0.9315 seconds and 153.9 Mi memory
2023-07-05 13:44:12.593878: Successfully ran: "cactus_analyseAssembly HG01891.2.sanitized.fa" in 0.9371 seconds and 153.9 Mi memory
2023-07-05 13:44:12.601631: Successfully ran: "cactus_analyseAssembly HG02886.2.sanitized.fa" in 0.9345 seconds and 153.9 Mi memory
2023-07-05 13:44:12.602313: Successfully ran: "cactus_analyseAssembly HG01106.1.sanitized.fa" in 0.9398 seconds and 153.9 Mi memory
2023-07-05 13:44:12.957527: Successfully ran: "cactus_analyseAssembly HG00741.2.sanitized.fa" in 0.8699 seconds and 73.0 Mi memory
2023-07-05 13:44:12.979839: Successfully ran: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa" in 0.843 seconds and 4.3 Mi memory
2023-07-05 13:44:12.981491: Successfully ran: "cactus_analyseAssembly HG03486.2.sanitized.fa" in 0.8639 seconds and 57.5 Mi memory
2023-07-05 13:44:12.996606: Successfully ran: "cactus_analyseAssembly HG02723.1.sanitized.fa" in 0.8365 seconds and 51.9 Mi memory
2023-07-05 13:44:12.999619: Successfully ran: "cactus_analyseAssembly HG00735.2.sanitized.fa" in 0.8658 seconds and 66.8 Mi memory
2023-07-05 13:44:13.014600: Successfully ran: "cactus_analyseAssembly HG02717.1.sanitized.fa" in 0.8687 seconds and 53.9 Mi memory
2023-07-05 13:44:13.015544: Successfully ran: "cactus_analyseAssembly HG02257.2.sanitized.fa" in 0.8606 seconds and 56.0 Mi memory
2023-07-05 13:44:13.027349: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 0.8657 seconds and 51.9 Mi memory
2023-07-05 13:44:13.035625: Successfully ran: "cactus_analyseAssembly HG02622.2.sanitized.fa" in 0.8675 seconds and 65.5 Mi memory
2023-07-05 13:44:13.048212: Successfully ran: "cactus_analyseAssembly HG01175.2.sanitized.fa" in 0.8655 seconds and 76.6 Mi memory
2023-07-05 13:44:13.067595: Successfully ran: "cactus_analyseAssembly NA21309.1.sanitized.fa" in 0.8539 seconds and 51.9 Mi memory
2023-07-05 13:44:13.067689: Successfully ran: "cactus_analyseAssembly HG01123.1.sanitized.fa" in 0.9278 seconds and 153.9 Mi memory
2023-07-05 13:44:13.071486: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 0.8625 seconds and 51.9 Mi memory
2023-07-05 13:44:13.073197: Successfully ran: "cactus_analyseAssembly HG01243.2.sanitized.fa" in 0.8489 seconds and 51.9 Mi memory
2023-07-05 13:44:13.091260: Successfully ran: "cactus_analyseAssembly NA20129.1.sanitized.fa" in 0.8538 seconds and 51.9 Mi memory
2023-07-05 13:44:13.095440: Successfully ran: "cactus_analyseAssembly HG02080.2.sanitized.fa" in 0.8684 seconds and 51.9 Mi memory
2023-07-05 13:44:13.108054: Successfully ran: "cactus_analyseAssembly HG01361.1.sanitized.fa" in 0.8694 seconds and 60.9 Mi memory
2023-07-05 13:44:13.109453: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/bcdf/09f6/tmpynhgklsi/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p'" in 1.0139 seconds and 51.9 Mi memory
2023-07-05 13:44:13.114450: Running the command: "cactus_analyseAssembly HG02257.1.sanitized.fa"
2023-07-05 13:44:13.117762: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 0.8869 seconds and 51.9 Mi memory
2023-07-05 13:44:13.120938: Successfully ran: "cactus_analyseAssembly HG02109.1.sanitized.fa" in 0.8584 seconds and 51.9 Mi memory
2023-07-05 13:44:13.122437: Successfully ran: "cactus_analyseAssembly HG03540.2.sanitized.fa" in 0.8702 seconds and 51.9 Mi memory
2023-07-05 13:44:13.129437: Successfully ran: "cactus_analyseAssembly HG01123.2.sanitized.fa" in 0.9072 seconds and 153.9 Mi memory
2023-07-05 13:44:13.133426: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 0.906 seconds and 153.9 Mi memory
2023-07-05 13:44:13.135687: Successfully ran: "cactus_analyseAssembly HG03453.1.sanitized.fa" in 0.8588 seconds and 60.1 Mi memory
2023-07-05 13:44:13.137870: Successfully ran: "cactus_analyseAssembly HG03540.1.sanitized.fa" in 0.9102 seconds and 153.9 Mi memory
2023-07-05 13:44:13.146245: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 0.8562 seconds and 51.9 Mi memory
2023-07-05 13:44:13.168522: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 0.8585 seconds and 51.9 Mi memory
2023-07-05 13:44:13.170485: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 0.8562 seconds and 51.9 Mi memory
2023-07-05 13:44:13.176295: Successfully ran: "cactus_analyseAssembly HG02559.2.sanitized.fa" in 0.8628 seconds and 55.5 Mi memory
2023-07-05 13:44:13.181698: Successfully ran: "cactus_analyseAssembly HG01358.1.sanitized.fa" in 0.9314 seconds and 153.9 Mi memory
2023-07-05 13:44:13.184864: Successfully ran: "cactus_analyseAssembly HG03579.1.sanitized.fa" in 0.8697 seconds and 64.7 Mi memory
2023-07-05 13:44:13.185201: Successfully ran: "cactus_analyseAssembly HG01071.2.sanitized.fa" in 0.9196 seconds and 153.9 Mi memory
2023-07-05 13:44:13.198331: Successfully ran: "cactus_analyseAssembly HG02080.1.sanitized.fa" in 0.8722 seconds and 69.6 Mi memory
2023-07-05 13:44:13.210465: Successfully ran: "cactus_analyseAssembly HG02622.1.sanitized.fa" in 0.913 seconds and 153.9 Mi memory
2023-07-05 13:44:13.234975: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 0.9225 seconds and 153.9 Mi memory
2023-07-05 13:44:13.257428: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 0.9256 seconds and 153.9 Mi memory
2023-07-05 13:44:13.268670: Successfully ran: "cactus_analyseAssembly HG02717.2.sanitized.fa" in 0.9219 seconds and 153.9 Mi memory
2023-07-05 13:44:13.272401: Successfully ran: "cactus_analyseAssembly HG01358.2.sanitized.fa" in 0.935 seconds and 153.9 Mi memory
2023-07-05 13:44:13.287509: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/5388/5771/tmpwg4z9ywy/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p'" in 1.1008 seconds and 73.1 Mi memory
2023-07-05 13:44:13.292663: Running the command: "cactus_analyseAssembly HG01258.2.sanitized.fa"
2023-07-05 13:44:13.352820: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/c4c9/2e83/tmpized8jhu/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p'" in 1.1266 seconds and 51.9 Mi memory
2023-07-05 13:44:13.355258: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/1f9a/f7a2/tmpjtt08m_o/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p'" in 1.1532 seconds and 154.0 Mi memory
2023-07-05 13:44:13.358100: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
2023-07-05 13:44:13.360588: Running the command: "cactus_analyseAssembly HG01891.2.sanitized.fa"
2023-07-05 13:44:13.400328: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/71ad/059d/tmpgruwp1sh/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p'" in 1.1635 seconds and 59.3 Mi memory
2023-07-05 13:44:13.401157: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/c3d1/7035/tmpjoicy8u_/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p'" in 1.188 seconds and 51.9 Mi memory
2023-07-05 13:44:13.404181: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/5508/88fe/tmpsyftezur/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p'" in 1.1882 seconds and 75.4 Mi memory
2023-07-05 13:44:13.405872: Running the command: "cactus_analyseAssembly HG02630.2.sanitized.fa"
2023-07-05 13:44:13.406662: Running the command: "cactus_analyseAssembly HG01952.1.sanitized.fa"
2023-07-05 13:44:13.411770: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72b7/91d3/tmpnxyktw95/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p'" in 1.1809 seconds and 154.0 Mi memory
2023-07-05 13:44:13.412748: Running the command: "cactus_analyseAssembly HG01258.1.sanitized.fa"
2023-07-05 13:44:13.417040: Running the command: "cactus_analyseAssembly HG01106.2.sanitized.fa"
2023-07-05 13:44:13.424047: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/3e9e/2962/tmpbi7z952k/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p'" in 1.1886 seconds and 51.9 Mi memory
2023-07-05 13:44:13.429264: Running the command: "cactus_analyseAssembly HG02148.1.sanitized.fa"
2023-07-05 13:44:13.448116: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/6135/f2cd/tmptug96mq7/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p'" in 1.2104 seconds and 63.5 Mi memory
2023-07-05 13:44:13.457661: Running the command: "cactus_analyseAssembly HG01358.2.sanitized.fa"
2023-07-05 13:44:13.463303: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/1602/4b44/tmpny1out3o/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p'" in 1.2262 seconds and 154.0 Mi memory
2023-07-05 13:44:13.466959: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0391/cc71/tmpg6b_hxgp/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p'" in 1.2365 seconds and 63.5 Mi memory
2023-07-05 13:44:13.468573: Running the command: "cactus_analyseAssembly HG03486.2.sanitized.fa"
2023-07-05 13:44:13.471946: Running the command: "cactus_analyseAssembly HG02818.2.sanitized.fa"
2023-07-05 13:44:13.477402: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/d80a/4607/tmp8puuuh4w/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p'" in 1.2395 seconds and 154.0 Mi memory
2023-07-05 13:44:13.482155: Running the command: "cactus_analyseAssembly HG01106.1.sanitized.fa"
2023-07-05 13:44:14.173519: Successfully ran: "cactus_analyseAssembly HG02257.1.sanitized.fa" in 1.0581 seconds and 51.9 Mi memory
2023-07-05 13:44:14.424304: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 1.1307 seconds and 73.0 Mi memory
2023-07-05 13:44:14.489772: Successfully ran: "cactus_analyseAssembly HG03098.2.sanitized.fa" in 1.1308 seconds and 51.9 Mi memory
2023-07-05 13:44:14.517992: Successfully ran: "cactus_analyseAssembly HG01891.2.sanitized.fa" in 1.1565 seconds and 153.9 Mi memory
2023-07-05 13:44:14.530182: Successfully ran: "cactus_analyseAssembly HG01258.1.sanitized.fa" in 1.1165 seconds and 75.3 Mi memory
2023-07-05 13:44:14.551882: Successfully ran: "cactus_analyseAssembly HG01952.1.sanitized.fa" in 1.1444 seconds and 51.9 Mi memory
2023-07-05 13:44:14.566783: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 1.16 seconds and 59.3 Mi memory
2023-07-05 13:44:14.599345: Successfully ran: "cactus_analyseAssembly HG02148.1.sanitized.fa" in 1.1691 seconds and 51.9 Mi memory
2023-07-05 13:44:14.602544: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 1.1299 seconds and 63.5 Mi memory
2023-07-05 13:44:14.608706: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 1.1909 seconds and 153.9 Mi memory
2023-07-05 13:44:14.610926: Successfully ran: "cactus_analyseAssembly HG01358.2.sanitized.fa" in 1.1522 seconds and 63.5 Mi memory
2023-07-05 13:44:14.649202: Successfully ran: "cactus_analyseAssembly HG03486.2.sanitized.fa" in 1.1798 seconds and 153.9 Mi memory
2023-07-05 13:44:14.653308: Successfully ran: "cactus_analyseAssembly HG01106.1.sanitized.fa" in 1.1703 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:44:14: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 5 Total-length: 39413009 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33335816 Median-sequence-length: 1591201 Max-sequence-length: 33335816 Min-sequence-length: 347926

Got message from job at time 07-05-2023 13:44:14: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 9 Total-length: 38657933 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26634067 Median-sequence-length: 132092 Max-sequence-length: 26634067 Min-sequence-length: 35930

Got message from job at time 07-05-2023 13:44:14: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 8 Total-length: 34995438 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33572117 Median-sequence-length: 189573 Max-sequence-length: 33572117 Min-sequence-length: 19102

Got message from job at time 07-05-2023 13:44:14: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 13 Total-length: 39367210 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20275969 Median-sequence-length: 190235 Max-sequence-length: 20275969 Min-sequence-length: 19427

Got message from job at time 07-05-2023 13:44:15: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 17 Total-length: 39121266 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24128466 Median-sequence-length: 92343 Max-sequence-length: 24128466 Min-sequence-length: 21738

Got message from job at time 07-05-2023 13:44:15: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 11 Total-length: 35704366 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32513875 Median-sequence-length: 89167 Max-sequence-length: 32513875 Min-sequence-length: 25641

Got message from job at time 07-05-2023 13:44:15: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 10 Total-length: 35602480 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20517449 Median-sequence-length: 285208 Max-sequence-length: 20517449 Min-sequence-length: 88566

Got message from job at time 07-05-2023 13:44:15: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 9 Total-length: 37603372 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25204737 Median-sequence-length: 1136266 Max-sequence-length: 25204737 Min-sequence-length: 37226

Got message from job at time 07-05-2023 13:44:15: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 11 Total-length: 37345697 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 8665179 Median-sequence-length: 210888 Max-sequence-length: 17080981 Min-sequence-length: 38590

Got message from job at time 07-05-2023 13:44:15: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 5 Total-length: 36201141 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33176438 Median-sequence-length: 276860 Max-sequence-length: 33176438 Min-sequence-length: 160028

Got message from job at time 07-05-2023 13:44:15: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 14 Total-length: 40027918 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28742387 Median-sequence-length: 204725 Max-sequence-length: 28742387 Min-sequence-length: 27076

Got message from job at time 07-05-2023 13:44:15: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 5 Total-length: 41989493 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32010287 Median-sequence-length: 3201391 Max-sequence-length: 32010287 Min-sequence-length: 241093

Got message from job at time 07-05-2023 13:44:15: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 6 Total-length: 35033019 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31584866 Median-sequence-length: 301431 Max-sequence-length: 31584866 Min-sequence-length: 265669

Got message from job at time 07-05-2023 13:44:15: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 13 Total-length: 36051881 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32392351 Median-sequence-length: 91557 Max-sequence-length: 32392351 Min-sequence-length: 27645

Got message from job at time 07-05-2023 13:44:15: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 6 Total-length: 37572717 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34660376 Median-sequence-length: 207604 Max-sequence-length: 34660376 Min-sequence-length: 33214

Got message from job at time 07-05-2023 13:44:15: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 6 Total-length: 35424791 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32521475 Median-sequence-length: 294583 Max-sequence-length: 32521475 Min-sequence-length: 36848

Got message from job at time 07-05-2023 13:44:15: Assembly stats for NA18906.1: Input-sample: NA18906.1.sanitized.fa Total-sequences: 15 Total-length: 42690630 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40696337 Median-sequence-length: 47892 Max-sequence-length: 40696337 Min-sequence-length: 20329

Got message from job at time 07-05-2023 13:44:15: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 11 Total-length: 36347251 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32982506 Median-sequence-length: 167884 Max-sequence-length: 32982506 Min-sequence-length: 22362

Got message from job at time 07-05-2023 13:44:15: Assembly stats for HG00735.1: Input-sample: HG00735.1.sanitized.fa Total-sequences: 5 Total-length: 36973606 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34453436 Median-sequence-length: 562719 Max-sequence-length: 34453436 Min-sequence-length: 178165

Got message from job at time 07-05-2023 13:44:15: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 11 Total-length: 36703211 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28049184 Median-sequence-length: 247137 Max-sequence-length: 28049184 Min-sequence-length: 31538

Got message from job at time 07-05-2023 13:44:15: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 14 Total-length: 37121125 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33138483 Median-sequence-length: 188810 Max-sequence-length: 33138483 Min-sequence-length: 25049

Got message from job at time 07-05-2023 13:44:15: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 9 Total-length: 40974344 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24975901 Median-sequence-length: 561855 Max-sequence-length: 24975901 Min-sequence-length: 45319

Got message from job at time 07-05-2023 13:44:15: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 12 Total-length: 42593792 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41271147 Median-sequence-length: 55647 Max-sequence-length: 41271147 Min-sequence-length: 26630

Got message from job at time 07-05-2023 13:44:15: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 12 Total-length: 39491099 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33093239 Median-sequence-length: 274670 Max-sequence-length: 33093239 Min-sequence-length: 43510

Got message from job at time 07-05-2023 13:44:15: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 10 Total-length: 37999966 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32997825 Median-sequence-length: 447724 Max-sequence-length: 32997825 Min-sequence-length: 44357

Got message from job at time 07-05-2023 13:44:15: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 11 Total-length: 37083952 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32264251 Median-sequence-length: 181739 Max-sequence-length: 32264251 Min-sequence-length: 19565

Got message from job at time 07-05-2023 13:44:15: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 11 Total-length: 38449198 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31883824 Median-sequence-length: 189468 Max-sequence-length: 31883824 Min-sequence-length: 17770

Got message from job at time 07-05-2023 13:44:15: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 7 Total-length: 39176460 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33862741 Median-sequence-length: 742789 Max-sequence-length: 33862741 Min-sequence-length: 19538

Got message from job at time 07-05-2023 13:44:15: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 13 Total-length: 39975155 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34255374 Median-sequence-length: 210805 Max-sequence-length: 34255374 Min-sequence-length: 21669

Got message from job at time 07-05-2023 13:44:16: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 7 Total-length: 37385784 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30329576 Median-sequence-length: 275121 Max-sequence-length: 30329576 Min-sequence-length: 184957

Got message from job at time 07-05-2023 13:44:16: Assembly stats for HG03453.1: Input-sample: HG03453.1.sanitized.fa Total-sequences: 8 Total-length: 34444478 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24746435 Median-sequence-length: 2325138 Max-sequence-length: 24746435 Min-sequence-length: 37793

Got message from job at time 07-05-2023 13:44:16: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 6 Total-length: 38513100 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33103774 Median-sequence-length: 2327738 Max-sequence-length: 33103774 Min-sequence-length: 34680

Got message from job at time 07-05-2023 13:44:16: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 10 Total-length: 40927239 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 38091486 Median-sequence-length: 64538 Max-sequence-length: 38091486 Min-sequence-length: 22783

Got message from job at time 07-05-2023 13:44:16: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 5 Total-length: 40146171 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37543720 Median-sequence-length: 176240 Max-sequence-length: 37543720 Min-sequence-length: 23490

Got message from job at time 07-05-2023 13:44:16: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 8 Total-length: 41812469 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 38838575 Median-sequence-length: 310792 Max-sequence-length: 38838575 Min-sequence-length: 33448

Got message from job at time 07-05-2023 13:44:16: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 7 Total-length: 39600801 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35610562 Median-sequence-length: 712957 Max-sequence-length: 35610562 Min-sequence-length: 140244

Got message from job at time 07-05-2023 13:44:16: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 7 Total-length: 40065084 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37345461 Median-sequence-length: 182908 Max-sequence-length: 37345461 Min-sequence-length: 43932

Got message from job at time 07-05-2023 13:44:16: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 10 Total-length: 37535642 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33725740 Median-sequence-length: 222328 Max-sequence-length: 33725740 Min-sequence-length: 32464

Got message from job at time 07-05-2023 13:44:16: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 3 Total-length: 40248473 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37933610 Median-sequence-length: 1395197 Max-sequence-length: 37933610 Min-sequence-length: 919666

Got message from job at time 07-05-2023 13:44:16: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 10 Total-length: 41051041 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29249307 Median-sequence-length: 440263 Max-sequence-length: 29249307 Min-sequence-length: 30742

2023-07-05 13:44:16.662163: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/fd28/503d/tmp57ttgpdz/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p"
2023-07-05 13:44:16.742579: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/d8b8/f5b9/tmpp_q3vbud/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-05 13:44:16.742641: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8c51/9430/tmpkuxr1wbm/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p"
2023-07-05 13:44:16.742677: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/7590/07a5/tmp77t70y28/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:44:16.743166: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/ce81/242c/tmpbfyrw4ma/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p"
2023-07-05 13:44:16.749241: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/b800/4073/tmpxwhcr7rs/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p"
2023-07-05 13:44:16.758543: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/2237/0aa3/tmp95fc6m81/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:44:16.765871: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/dad5/0213/tmpaiugg5lj/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p"
2023-07-05 13:44:16.775704: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/6286/2706/tmpiyz8g1xc/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-05 13:44:16.776303: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8c3c/d75b/tmph5nk0xx9/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p"
2023-07-05 13:44:16.776468: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8e35/a7e1/tmp47qt27a6/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p"
2023-07-05 13:44:16.784235: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/5406/8644/tmpddzf9yen/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-05 13:44:16.793851: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/163a/6094/tmpfa_8r3ma/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p"
2023-07-05 13:44:16.799664: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/7c4e/228d/tmp4iqo5zfs/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p"
2023-07-05 13:44:16.801922: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/06eb/8705/tmpdq2o11df/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p"
2023-07-05 13:44:16.809131: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/0e60/ae99/tmpitt5bltw/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
2023-07-05 13:44:16.809697: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/64b1/da5a/tmp5x9474l5/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
2023-07-05 13:44:16.810811: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/98fb/91f0/tmp7799qjze/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
2023-07-05 13:44:16.815681: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/1042/cf64/tmpzinztlwm/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p"
2023-07-05 13:44:16.818253: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/bee4/d143/tmp3t4znrg0/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p"
2023-07-05 13:44:16.825581: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/003d/d7d4/tmpix2g_esh/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p"
2023-07-05 13:44:16.827850: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/dab0/30d6/tmpi21mwqki/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p"
2023-07-05 13:44:16.828963: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/add8/89be/tmpur3ir4xf/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p"
2023-07-05 13:44:16.830113: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/747b/934d/tmppex9fqug/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p"
2023-07-05 13:44:16.972634: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/707c/1ee5/tmpw_0p02y7/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:44:17.005161: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/894d/f661/tmpb3ocz24v/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p"
2023-07-05 13:44:17.093785: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a9b/5461/tmptz1baa9q/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p"
2023-07-05 13:44:17.112440: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3601/4319/tmphbgme13c/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p"
2023-07-05 13:44:17.141088: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/70dd/e3da/tmpxz098m1y/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p"
2023-07-05 13:44:17.264837: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/346a/f326/tmpwbg9ugfi/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-05 13:44:17.269532: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e16c/a3f5/tmp_3tmk7xz/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:44:17.270818: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/85b2/173e/tmpdj8okyg8/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p"
2023-07-05 13:44:17.283430: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/80b9/687b/tmpezc0ta8e/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p"
2023-07-05 13:44:17.305634: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/776d/1ba4/tmpxxjdyfsh/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
2023-07-05 13:44:17.315066: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1f00/d007/tmpzrl6oblw/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p"
2023-07-05 13:44:17.316252: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c8c0/7abd/tmpxcw73tw4/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p"
2023-07-05 13:44:17.334043: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/0c9f/9493/tmpdnftuxls/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p"
2023-07-05 13:44:17.334790: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f867/2c7d/tmp7li34hwu/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p"
2023-07-05 13:44:17.341221: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/69d3/d6da/tmp27tq4ma8/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:44:17.347262: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9854/8c13/tmpmpnz1zd3/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p"
2023-07-05 13:44:17.354599: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c65d/1072/tmp_t7d933v/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-05 13:44:17.355099: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3fbf/2b60/tmppsycwh3j/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p"
2023-07-05 13:44:17.355534: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bea9/a163/tmpkvlabjwk/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p"
2023-07-05 13:44:17.355959: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/0959/7d42/tmp6h73cxla/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p"
2023-07-05 13:44:17.356506: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/571d/0d50/tmprf7isln2/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p"
2023-07-05 13:44:17.357314: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8ca4/ea3f/tmpm5z72_ur/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p"
2023-07-05 13:44:17.357389: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5d4d/9b10/tmpinz8y3ch/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p"
2023-07-05 13:44:17.359986: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/0a33/4f63/tmpe8e39iz5/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p"
2023-07-05 13:44:17.362208: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d41a/9cf1/tmp300tab11/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p"
2023-07-05 13:44:17.362445: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eca3/a2bb/tmpmqibsylx/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p"
2023-07-05 13:44:17.363229: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9436/657f/tmph_vxxab9/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
2023-07-05 13:44:17.363385: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9125/759e/tmptpafttqp/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p"
2023-07-05 13:44:17.363557: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/269a/0568/tmpt492mf1v/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p"
2023-07-05 13:44:17.365785: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/0187/97bc/tmpyoax6e2p/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p"
2023-07-05 13:44:17.365987: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/11a9/3a69/tmp5z8b0q01/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p"
2023-07-05 13:44:17.376815: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f79d/6337/tmp2eka4rg5/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p"
2023-07-05 13:44:17.376944: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a0f5/57d3/tmpi8u79ez0/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p"
2023-07-05 13:44:17.380965: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e3b1/c203/tmpqcrasstc/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p"
2023-07-05 13:44:17.381952: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/951d/f9b3/tmpxtbyo93b/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p"
2023-07-05 13:44:17.383539: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1c5e/afd4/tmpd3zm0dne/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p"
2023-07-05 13:44:17.384464: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/10c9/26f7/tmp52qzj8tk/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p"
2023-07-05 13:44:17.384718: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6a24/8717/tmpckub337p/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-05 13:44:17.387656: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/45a9/8217/tmpbv_8_41_/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p"
2023-07-05 13:44:17.388855: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/55f2/35eb/tmpraunvnp_/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p"
2023-07-05 13:44:17.391638: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3508/067e/tmpzuw0kf0_/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p"
2023-07-05 13:44:17.394287: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/667b/a32d/tmpowz52sn8/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p"
2023-07-05 13:44:17.395372: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5c2e/c8b6/tmpsr72hyc_/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p"
2023-07-05 13:44:17.396665: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c580/a102/tmpp5zehr3x/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p"
2023-07-05 13:44:17.400716: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/81da/3203/tmpj3yjv0yl/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
2023-07-05 13:44:17.406231: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/cb4c/d5dd/tmpw7gsk0xs/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p"
2023-07-05 13:44:17.425409: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/41ab/4df9/tmpwi9th5tt/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-05 13:44:17.470764: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/dc2c/3ee8/tmph5eydtao/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p"
2023-07-05 13:44:17.479088: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/894b/07ae/tmp9bzv13w0/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-05 13:44:17.483959: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a8be/5d88/tmpyw0oibsn/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p"
2023-07-05 13:44:17.491586: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a0b6/5f54/tmp0wgdjb5n/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p"
2023-07-05 13:44:17.494454: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0a3d/d9ae/tmpgsbxsbfi/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p"
2023-07-05 13:44:17.503148: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/598b/8a57/tmpea6y0tl8/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-05 13:44:17.503808: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2ce1/9f29/tmp4gv23i7a/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
2023-07-05 13:44:17.507473: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/eca2/8581/tmpjnm87fvs/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p"
2023-07-05 13:44:17.513513: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2e65/91a0/tmp7r8itupb/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p"
2023-07-05 13:44:17.516815: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7a79/97d6/tmpvkcx8xfk/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p"
2023-07-05 13:44:17.523997: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/231e/ec95/tmp4sdsu8m2/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p"
2023-07-05 13:44:17.525398: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/48c0/4f51/tmp9nbstulq/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p"
2023-07-05 13:44:17.528159: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9c6c/f428/tmpg9257hiw/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-05 13:44:17.529353: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a2a/50e0/tmpqot9q_lr/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:44:17.531892: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2508/0e81/tmp0_3n8tfr/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p"
2023-07-05 13:44:17.532308: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9e2f/f44c/tmpa1kylcy8/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p"
2023-07-05 13:44:17.532999: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/61fe/2dd3/tmpsqm4h38v/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p"
2023-07-05 13:44:17.532957: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a99d/79e5/tmpj6pk1wp6/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p"
2023-07-05 13:44:17.534043: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8985/e426/tmp3q1v53oz/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p"
2023-07-05 13:44:17.536594: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a16e/6509/tmp7fyp2shr/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p"
2023-07-05 13:44:17.536825: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/d508/44db/tmp_i_rf1es/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
2023-07-05 13:44:17.539292: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1dcd/6f7b/tmphmdv9kuv/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p"
2023-07-05 13:44:17.540977: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/22ec/324f/tmpcmo1ht56/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
2023-07-05 13:44:17.541669: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/773c/2484/tmpy7ujn69b/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p"
2023-07-05 13:44:17.541753: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/76a6/ff7b/tmpku2firlv/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p"
2023-07-05 13:44:17.543693: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8501/e43b/tmpre45_ivm/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p"
2023-07-05 13:44:17.558511: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6cf7/9d4e/tmpmm2u122v/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
2023-07-05 13:44:17.631620: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/108a/8351/tmp63k02gpj/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p"
2023-07-05 13:44:18.073928: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/9b11/ed4f/tmpsm8z2ok8/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p"
2023-07-05 13:44:18.147828: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/86ef/430c/tmpc3wxntg7/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-05 13:44:18.279516: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/f77d/8c90/tmppjxxmbnf/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p"
2023-07-05 13:44:18.298677: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/b1bc/be34/tmpqwigrm8o/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:44:18.312073: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2e41/c4d5/tmpgrshlevb/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p"
2023-07-05 13:44:18.324656: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/7103/2a98/tmp7go5ar7a/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p"
2023-07-05 13:44:18.328616: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/24ac/f853/tmpo0kbf3av/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-05 13:44:18.329229: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/9fd1/159a/tmp1l_c6ovh/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p"
2023-07-05 13:44:18.331051: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/28a3/6652/tmpuq5d70w2/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p"
2023-07-05 13:44:18.342031: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/6149/937d/tmp4cgrcsmv/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p"
2023-07-05 13:44:18.350626: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2968/ab87/tmpgkxinh55/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p"
2023-07-05 13:44:18.353043: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/744f/4ff6/tmp91y2f5yv/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:44:18.354410: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/4da4/774b/tmptqye5i1h/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p"
2023-07-05 13:44:18.364632: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fd0a/cd89/tmpzd1h4x5v/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p"
2023-07-05 13:44:18.369510: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/d5f1/5fd5/tmpvjfd3vxf/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
2023-07-05 13:44:18.371425: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/5ac9/c0e2/tmpsvzl0a8c/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p"
2023-07-05 13:44:18.388673: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/894d/f661/tmpb3ocz24v/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p'" in 1.3822 seconds and 55.8 Mi memory
2023-07-05 13:44:18.393503: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a9b/5461/tmptz1baa9q/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p'" in 1.2984 seconds and 51.9 Mi memory
2023-07-05 13:44:18.395708: Running the command: "cactus_analyseAssembly HG01109.2.sanitized.fa"
2023-07-05 13:44:18.400479: Running the command: "cactus_analyseAssembly HG02818.2.sanitized.fa"
2023-07-05 13:44:18.431381: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/707c/1ee5/tmpw_0p02y7/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p'" in 1.4574 seconds and 59.1 Mi memory
2023-07-05 13:44:18.438172: Running the command: "cactus_analyseAssembly HG01109.1.sanitized.fa"
2023-07-05 13:44:18.471867: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/70dd/e3da/tmpxz098m1y/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p'" in 1.3295 seconds and 154.0 Mi memory
2023-07-05 13:44:18.478495: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3601/4319/tmphbgme13c/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p'" in 1.3647 seconds and 154.0 Mi memory
2023-07-05 13:44:18.479104: Running the command: "cactus_analyseAssembly HG01106.1.sanitized.fa"
2023-07-05 13:44:18.485484: Running the command: "cactus_analyseAssembly HG01978.2.sanitized.fa"
2023-07-05 13:44:18.490231: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/afab/4ada/tmp5l6ngv62/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
2023-07-05 13:44:18.496584: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/15bd/fada/tmpkqjko_t0/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p"
2023-07-05 13:44:18.543195: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/5ec8/e8c8/tmp7fxdb6mb/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p"
2023-07-05 13:44:18.570219: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/25d0/96a5/tmp0vetx00a/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p"
2023-07-05 13:44:18.604089: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/623b/b8be/tmpe3hlp1we/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p"
2023-07-05 13:44:18.614844: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/0187/97bc/tmpyoax6e2p/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p'" in 1.2477 seconds and 51.9 Mi memory
2023-07-05 13:44:18.622310: Running the command: "cactus_analyseAssembly HG02886.2.sanitized.fa"
2023-07-05 13:44:18.643316: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/6fb5/4509/tmp9nmsicyp/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p"
2023-07-05 13:44:18.651080: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/269a/0568/tmpt492mf1v/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p'" in 1.2861 seconds and 64.8 Mi memory
2023-07-05 13:44:18.658076: Running the command: "cactus_analyseAssembly HG03579.2.sanitized.fa"
2023-07-05 13:44:18.659561: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/571d/0d50/tmprf7isln2/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p'" in 1.3014 seconds and 51.9 Mi memory
2023-07-05 13:44:18.666647: Running the command: "cactus_analyseAssembly HG02572.1.sanitized.fa"
2023-07-05 13:44:18.670120: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2189/9709/tmpknmd6j0y/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p"
2023-07-05 13:44:18.676964: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/0959/7d42/tmp6h73cxla/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p'" in 1.3195 seconds and 59.9 Mi memory
2023-07-05 13:44:18.679696: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1c5e/afd4/tmpd3zm0dne/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p'" in 1.295 seconds and 51.9 Mi memory
2023-07-05 13:44:18.680480: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3fbf/2b60/tmppsycwh3j/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p'" in 1.3239 seconds and 153.9 Mi memory
2023-07-05 13:44:18.682120: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8ca4/ea3f/tmpm5z72_ur/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p'" in 1.3236 seconds and 51.9 Mi memory
2023-07-05 13:44:18.682732: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9854/8c13/tmpmpnz1zd3/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p'" in 1.334 seconds and 51.9 Mi memory
2023-07-05 13:44:18.685412: Running the command: "cactus_analyseAssembly HG02055.1.sanitized.fa"
2023-07-05 13:44:18.686945: Running the command: "cactus_analyseAssembly HG02630.1.sanitized.fa"
2023-07-05 13:44:18.687592: Running the command: "cactus_analyseAssembly HG01952.1.sanitized.fa"
2023-07-05 13:44:18.689613: Running the command: "cactus_analyseAssembly HG03492.2.sanitized.fa"
2023-07-05 13:44:18.690547: Running the command: "cactus_analyseAssembly HG03453.2.sanitized.fa"
2023-07-05 13:44:18.690489: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e3b1/c203/tmpqcrasstc/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p'" in 1.3075 seconds and 153.9 Mi memory
2023-07-05 13:44:18.695648: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2800/2e8e/tmpblqh45gb/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:44:18.697013: Running the command: "cactus_analyseAssembly HG02257.1.sanitized.fa"
2023-07-05 13:44:18.737414: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/08af/8205/tmpoc8566wx/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p"
2023-07-05 13:44:18.739243: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1913/3d6c/tmpw5kv4qwv/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p"
2023-07-05 13:44:18.746031: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/9282/ef58/tmptv26i_4g/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
2023-07-05 13:44:18.748489: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/3700/f69f/tmp15yjpc77/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p"
2023-07-05 13:44:18.751021: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/77f0/0f80/tmpw62yuo7i/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p"
2023-07-05 13:44:18.753671: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/84ad/3541/tmps6_j7hxb/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p"
2023-07-05 13:44:18.757969: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/70d5/97b9/tmp9ob84jgg/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p"
2023-07-05 13:44:18.759588: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/7af2/b5f9/tmpeuw1gn3s/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p"
2023-07-05 13:44:18.759666: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/d15c/f3d1/tmp3bd71fa8/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p"
2023-07-05 13:44:18.768885: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/0a33/4f63/tmpe8e39iz5/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p'" in 1.4077 seconds and 51.9 Mi memory
2023-07-05 13:44:18.775793: Running the command: "cactus_analyseAssembly NA21309.2.sanitized.fa"
2023-07-05 13:44:18.778900: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/0267/8281/tmp3ymx0moz/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p"
2023-07-05 13:44:18.781591: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ea18/096e/tmp4djgi6bi/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p"
2023-07-05 13:44:18.784918: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/6061/9ace/tmpsq5gfu_1/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
2023-07-05 13:44:18.788146: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/b4f9/c368/tmpjx7m0fdn/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-05 13:44:18.788373: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f76a/9c85/tmpc_10c75x/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p"
2023-07-05 13:44:18.791785: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/11a9/3a69/tmp5z8b0q01/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p'" in 1.4244 seconds and 51.9 Mi memory
2023-07-05 13:44:18.792745: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/9386/0a3b/tmpp0t_7l8o/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p"
2023-07-05 13:44:18.792483: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f867/2c7d/tmp7li34hwu/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p'" in 1.4562 seconds and 66.4 Mi memory
2023-07-05 13:44:18.797032: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/aa2a/d5e4/tmpr65ocxzf/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p"
2023-07-05 13:44:18.797922: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/7c76/2ce9/tmptay1b0ke/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p"
Got message from job at time 07-05-2023 13:44:18: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 6 Total-length: 147868159 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44497607 Median-sequence-length: 28954957 Max-sequence-length: 56013339 Min-sequence-length: 2350688

2023-07-05 13:44:18.799016: Running the command: "cactus_analyseAssembly HG02055.2.sanitized.fa"
2023-07-05 13:44:18.799091: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/951d/f9b3/tmpxtbyo93b/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p'" in 1.4156 seconds and 51.9 Mi memory
2023-07-05 13:44:18.799605: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/753f/aeba/tmptrih0sz4/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-05 13:44:18.799533: Running the command: "cactus_analyseAssembly HG00438.1.sanitized.fa"
2023-07-05 13:44:18.799877: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a0f5/57d3/tmpi8u79ez0/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p'" in 1.4217 seconds and 77.4 Mi memory
2023-07-05 13:44:18.800427: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/cd3b/b940/tmpp8gt4x46/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
2023-07-05 13:44:18.802219: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/7a78/864b/tmpopgsf4fq/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p"
2023-07-05 13:44:18.805433: Running the command: "cactus_analyseAssembly HG03098.1.sanitized.fa"
2023-07-05 13:44:18.806013: Running the command: "cactus_analyseAssembly HG02486.2.sanitized.fa"
2023-07-05 13:44:18.809776: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9125/759e/tmptpafttqp/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p'" in 1.4453 seconds and 51.9 Mi memory
2023-07-05 13:44:18.811130: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/95c3/486d/tmpqqecqtt7/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p"
2023-07-05 13:44:18.811648: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/a95e/1aeb/tmpy2mpg39b/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p"
2023-07-05 13:44:18.812018: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/011d/9aa2/tmpma596awj/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p"
2023-07-05 13:44:18.816250: Running the command: "cactus_analyseAssembly HG02886.1.sanitized.fa"
2023-07-05 13:44:18.816924: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff37/4366/tmpazut9il3/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p"
2023-07-05 13:44:18.819002: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2b9f/7718/tmpts21v9cn/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p"
2023-07-05 13:44:18.817833: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/41ab/4df9/tmpwi9th5tt/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p'" in 1.3911 seconds and 57.1 Mi memory
2023-07-05 13:44:18.819280: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1c3c/d33b/tmp1fm6byb4/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-05 13:44:18.820290: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/a1e6/f3b2/tmpuhg_6wu6/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p"
2023-07-05 13:44:18.820455: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1e6f/106d/tmp5dyqjkt6/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p"
2023-07-05 13:44:18.820871: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/56e6/923c/tmpr167bc9a/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p"
2023-07-05 13:44:18.819432: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6cf7/9d4e/tmpmm2u122v/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p'" in 1.2599 seconds and 4.5 Mi memory
2023-07-05 13:44:18.822597: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/12a2/0f53/tmpo8cyl52o/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p"
2023-07-05 13:44:18.823715: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/19f1/ae53/tmp1gkm5jc4/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
2023-07-05 13:44:18.825243: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5c2e/c8b6/tmpsr72hyc_/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p'" in 1.4288 seconds and 51.9 Mi memory
2023-07-05 13:44:18.825149: Running the command: "cactus_analyseAssembly HG00733.2.sanitized.fa"
2023-07-05 13:44:18.827539: Running the command: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa"
2023-07-05 13:44:18.828839: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/d41a/9cf1/tmp300tab11/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p'" in 1.4654 seconds and 154.0 Mi memory
2023-07-05 13:44:18.832267: Running the command: "cactus_analyseAssembly NA18906.1.sanitized.fa"
2023-07-05 13:44:18.834162: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/667b/a32d/tmpowz52sn8/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p'" in 1.4387 seconds and 57.0 Mi memory
2023-07-05 13:44:18.834830: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/e6f7/71c8/tmpid0qcbor/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-05 13:44:18.835968: Running the command: "cactus_analyseAssembly HG02486.1.sanitized.fa"
2023-07-05 13:44:18.836894: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1874/1d80/tmpih_pydat/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p"
2023-07-05 13:44:18.836838: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/69d3/d6da/tmp27tq4ma8/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p'" in 1.4944 seconds and 51.9 Mi memory
2023-07-05 13:44:18.837931: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/d7dc/7781/tmpeaysja43/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p"
2023-07-05 13:44:18.838070: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/f79d/6337/tmp2eka4rg5/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p'" in 1.4602 seconds and 74.6 Mi memory
2023-07-05 13:44:18.839850: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/55a6/b31a/tmp2hdb5sa_/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p"
2023-07-05 13:44:18.841025: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/3ebf/6aa1/tmp484dop04/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p"
2023-07-05 13:44:18.840561: Running the command: "cactus_analyseAssembly HG02148.1.sanitized.fa"
2023-07-05 13:44:18.842461: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/346a/f326/tmpwbg9ugfi/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p'" in 1.5764 seconds and 55.5 Mi memory
2023-07-05 13:44:18.843103: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/85b2/173e/tmpdj8okyg8/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p'" in 1.571 seconds and 51.9 Mi memory
2023-07-05 13:44:18.843068: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a0b6/5f54/tmp0wgdjb5n/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p'" in 1.3501 seconds and 55.8 Mi memory
2023-07-05 13:44:18.844637: Running the command: "cactus_analyseAssembly HG02145.1.sanitized.fa"
2023-07-05 13:44:18.844895: Running the command: "cactus_analyseAssembly HG01952.2.sanitized.fa"
2023-07-05 13:44:18.844887: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7a79/97d6/tmpvkcx8xfk/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p'" in 1.3267 seconds and 58.3 Mi memory
2023-07-05 13:44:18.846999: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/7598/cdef/tmphzt53wlk/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p"
2023-07-05 13:44:18.847276: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ea3e/9893/tmpgwqgcwux/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p"
2023-07-05 13:44:18.848718: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c8c0/7abd/tmpxcw73tw4/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p'" in 1.5313 seconds and 55.8 Mi memory
2023-07-05 13:44:18.848913: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/55f2/35eb/tmpraunvnp_/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p'" in 1.4589 seconds and 72.5 Mi memory
2023-07-05 13:44:18.850237: Running the command: "cactus_analyseAssembly HG01258.1.sanitized.fa"
2023-07-05 13:44:18.850344: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/45a9/8217/tmpbv_8_41_/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p'" in 1.4616 seconds and 51.9 Mi memory
2023-07-05 13:44:18.849668: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a99d/79e5/tmpj6pk1wp6/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p'" in 1.3152 seconds and 51.9 Mi memory
2023-07-05 13:44:18.851011: Running the command: "cactus_analyseAssembly HG03516.1.sanitized.fa"
2023-07-05 13:44:18.850459: Running the command: "cactus_analyseAssembly HG02818.2.sanitized.fa"
2023-07-05 13:44:18.851864: Running the command: "cactus_analyseAssembly HG02622.1.sanitized.fa"
2023-07-05 13:44:18.852540: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/48c0/4f51/tmp9nbstulq/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p'" in 1.3261 seconds and 51.9 Mi memory
2023-07-05 13:44:18.855438: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/217b/1a03/tmpw6c7yvnj/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p"
2023-07-05 13:44:18.854312: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/eca2/8581/tmpjnm87fvs/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p'" in 1.3452 seconds and 56.6 Mi memory
2023-07-05 13:44:18.855523: Running the command: "cactus_analyseAssembly HG01928.1.sanitized.fa"
2023-07-05 13:44:18.855882: Running the command: "cactus_analyseAssembly HG01258.2.sanitized.fa"
2023-07-05 13:44:18.856102: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9436/657f/tmph_vxxab9/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p'" in 1.4917 seconds and 153.9 Mi memory
2023-07-05 13:44:18.857364: Running the command: "cactus_analyseAssembly NA20129.2.sanitized.fa"
2023-07-05 13:44:18.856928: Running the command: "cactus_analyseAssembly HG03492.2.sanitized.fa"
2023-07-05 13:44:18.858035: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/76a6/ff7b/tmpku2firlv/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p'" in 1.315 seconds and 52.9 Mi memory
2023-07-05 13:44:18.858689: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2508/0e81/tmp0_3n8tfr/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p'" in 1.3257 seconds and 51.9 Mi memory
2023-07-05 13:44:18.860345: Running the command: "cactus_analyseAssembly HG03098.1.sanitized.fa"
2023-07-05 13:44:18.861725: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bea9/a163/tmpkvlabjwk/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p'" in 1.5048 seconds and 55.5 Mi memory
2023-07-05 13:44:18.861322: Running the command: "cactus_analyseAssembly HG02055.1.sanitized.fa"
2023-07-05 13:44:18.863624: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/70c1/874a/tmpv4bbemyq/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p"
2023-07-05 13:44:18.863877: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/10c9/26f7/tmp52qzj8tk/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p'" in 1.4783 seconds and 56.7 Mi memory
2023-07-05 13:44:18.864883: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2ce1/9f29/tmp4gv23i7a/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p'" in 1.3597 seconds and 77.4 Mi memory
2023-07-05 13:44:18.865316: Running the command: "cactus_analyseAssembly HG02148.1.sanitized.fa"
2023-07-05 13:44:18.865608: Running the command: "cactus_analyseAssembly HG01928.1.sanitized.fa"
2023-07-05 13:44:18.866973: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a2a/50e0/tmpqot9q_lr/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p'" in 1.3362 seconds and 51.9 Mi memory
2023-07-05 13:44:18.867894: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/80b9/687b/tmpezc0ta8e/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p'" in 1.5831 seconds and 67.4 Mi memory
2023-07-05 13:44:18.867961: Running the command: "cactus_analyseAssembly CHM13.sanitized.fa"
2023-07-05 13:44:18.868646: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c580/a102/tmpp5zehr3x/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p'" in 1.4709 seconds and 154.0 Mi memory
2023-07-05 13:44:18.869022: Running the command: "cactus_analyseAssembly HG02559.1.sanitized.fa"
2023-07-05 13:44:18.869599: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/3d81/9f26/tmpj0zxk5be/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p"
2023-07-05 13:44:18.871304: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2903/6dd6/tmp68olq0or/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p"
2023-07-05 13:44:18.871437: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/5312/bbc6/tmpogakahoe/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
2023-07-05 13:44:18.871270: Running the command: "cactus_analyseAssembly HG01243.1.sanitized.fa"
2023-07-05 13:44:18.872640: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/7f74/0e78/tmpz6uj3fon/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p"
2023-07-05 13:44:18.872103: Running the command: "cactus_analyseAssembly HG00438.2.sanitized.fa"
2023-07-05 13:44:18.873851: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1f00/d007/tmpzrl6oblw/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p'" in 1.5573 seconds and 51.9 Mi memory
2023-07-05 13:44:18.875073: Running the command: "cactus_analyseAssembly HG00673.2.sanitized.fa"
2023-07-05 13:44:18.875733: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/7ee7/032c/tmp1s75t91b/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p"
2023-07-05 13:44:18.875306: Running the command: "cactus_analyseAssembly HG01891.2.sanitized.fa"
2023-07-05 13:44:18.874679: Running the command: "cactus_analyseAssembly HG01109.1.sanitized.fa"
2023-07-05 13:44:18.877161: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/034b/cefa/tmpy9g3mw_x/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p"
Got message from job at time 07-05-2023 13:44:18: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 22 Total-length: 143923490 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 80910937 Median-sequence-length: 632903 Max-sequence-length: 80910937 Min-sequence-length: 20654

2023-07-05 13:44:18.877918: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ef3b/47f0/tmp_7093mnd/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p"
2023-07-05 13:44:18.876588: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2e65/91a0/tmp7r8itupb/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p'" in 1.3617 seconds and 57.3 Mi memory
2023-07-05 13:44:18.879214: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/3735/ae41/tmpavlsjchw/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p"
2023-07-05 13:44:18.877773: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/61fe/2dd3/tmpsqm4h38v/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p'" in 1.3435 seconds and 56.6 Mi memory
2023-07-05 13:44:18.877931: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/dc2c/3ee8/tmph5eydtao/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p'" in 1.4058 seconds and 154.0 Mi memory
2023-07-05 13:44:18.880525: Running the command: "cactus_analyseAssembly HG02572.2.sanitized.fa"
2023-07-05 13:44:18.880107: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/22ec/324f/tmpcmo1ht56/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p'" in 1.338 seconds and 57.8 Mi memory
2023-07-05 13:44:18.881166: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8501/e43b/tmpre45_ivm/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p'" in 1.3362 seconds and 51.9 Mi memory
2023-07-05 13:44:18.882233: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/eca3/a2bb/tmpmqibsylx/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p'" in 1.5185 seconds and 59.8 Mi memory
2023-07-05 13:44:18.883700: Running the command: "cactus_analyseAssembly HG02723.2.sanitized.fa"
2023-07-05 13:44:18.885791: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/8465/aec9/tmpec45_mmj/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
2023-07-05 13:44:18.884431: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/773c/2484/tmpy7ujn69b/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p'" in 1.3416 seconds and 77.4 Mi memory
2023-07-05 13:44:18.885081: Running the command: "cactus_analyseAssembly HG02622.2.sanitized.fa"
2023-07-05 13:44:18.885093: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8985/e426/tmp3q1v53oz/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p'" in 1.35 seconds and 54.8 Mi memory
2023-07-05 13:44:18.885358: Running the command: "cactus_analyseAssembly HG00438.1.sanitized.fa"
2023-07-05 13:44:18.887631: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/858b/7eeb/tmpx29y5r1m/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p"
2023-07-05 13:44:18.886622: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/d508/44db/tmp_i_rf1es/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p'" in 1.3485 seconds and 51.9 Mi memory
2023-07-05 13:44:18.887808: Running the command: "cactus_analyseAssembly HG01123.2.sanitized.fa"
2023-07-05 13:44:18.888771: Running the command: "cactus_analyseAssembly HG00735.1.sanitized.fa"
2023-07-05 13:44:18.888472: Running the command: "cactus_analyseAssembly HG03453.1.sanitized.fa"
2023-07-05 13:44:18.890298: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/3195/231c/tmp3tnyg2ke/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p"
2023-07-05 13:44:18.889819: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/894b/07ae/tmp9bzv13w0/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p'" in 1.4096 seconds and 51.9 Mi memory
2023-07-05 13:44:18.891596: Running the command: "cactus_analyseAssembly HG01243.2.sanitized.fa"
2023-07-05 13:44:18.892800: Running the command: "cactus_analyseAssembly NA18906.2.sanitized.fa"
Got message from job at time 07-05-2023 13:44:18: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 4 Total-length: 145997936 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 100712753 Median-sequence-length: 31172639 Max-sequence-length: 100712753 Min-sequence-length: 2127981

2023-07-05 13:44:18.894298: Running the command: "cactus_analyseAssembly HG03486.1.sanitized.fa"
2023-07-05 13:44:18.897516: Running the command: "cactus_analyseAssembly HG00733.1.sanitized.fa"
2023-07-05 13:44:18.898893: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5d4d/9b10/tmpinz8y3ch/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p'" in 1.5403 seconds and 154.0 Mi memory
2023-07-05 13:44:18.899147: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/598b/8a57/tmpea6y0tl8/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p'" in 1.3947 seconds and 154.0 Mi memory
2023-07-05 13:44:18.900620: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1dcd/6f7b/tmphmdv9kuv/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 1.3599 seconds and 51.9 Mi memory
2023-07-05 13:44:18.902939: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/81da/3203/tmpj3yjv0yl/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p'" in 1.501 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:44:18: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 5 Total-length: 147050833 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 91829719 Median-sequence-length: 5310068 Max-sequence-length: 91829719 Min-sequence-length: 21931

2023-07-05 13:44:18.905499: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/e16c/a3f5/tmp_3tmk7xz/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 1.6347 seconds and 153.9 Mi memory
2023-07-05 13:44:18.906424: Running the command: "cactus_analyseAssembly HG00741.1.sanitized.fa"
2023-07-05 13:44:18.905976: Running the command: "cactus_analyseAssembly HG00621.1.sanitized.fa"
2023-07-05 13:44:18.907520: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/776d/1ba4/tmpxxjdyfsh/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p'" in 1.6007 seconds and 55.0 Mi memory
2023-07-05 13:44:18.907525: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-05 13:44:18.909552: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6a24/8717/tmpckub337p/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p'" in 1.5236 seconds and 154.0 Mi memory
2023-07-05 13:44:18.911273: Running the command: "cactus_analyseAssembly HG00438.2.sanitized.fa"
2023-07-05 13:44:18.913129: Running the command: "cactus_analyseAssembly GRCh38.sanitized.fa"
2023-07-05 13:44:18.912683: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9e2f/f44c/tmpa1kylcy8/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p'" in 1.3788 seconds and 59.6 Mi memory
2023-07-05 13:44:18.914938: Running the command: "cactus_analyseAssembly HG03486.1.sanitized.fa"
2023-07-05 13:44:18.917804: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/0c9f/9493/tmpdnftuxls/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p'" in 1.582 seconds and 154.0 Mi memory
2023-07-05 13:44:18.918046: Running the command: "cactus_analyseAssembly HG00733.1.sanitized.fa"
2023-07-05 13:44:18.918345: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3508/067e/tmpzuw0kf0_/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p'" in 1.5256 seconds and 154.0 Mi memory
2023-07-05 13:44:18.917717: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/231e/ec95/tmp4sdsu8m2/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p'" in 1.3923 seconds and 56.5 Mi memory
2023-07-05 13:44:18.919609: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/c65d/1072/tmp_t7d933v/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p'" in 1.5637 seconds and 58.6 Mi memory
Got message from job at time 07-05-2023 13:44:18: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 7 Total-length: 146085054 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 74793090 Median-sequence-length: 1593895 Max-sequence-length: 74793090 Min-sequence-length: 59061

2023-07-05 13:44:18.919648: Running the command: "cactus_analyseAssembly HG01952.1.sanitized.fa"
2023-07-05 13:44:18.922853: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a16e/6509/tmp7fyp2shr/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p'" in 1.3849 seconds and 154.0 Mi memory
Got message from job at time 07-05-2023 13:44:18: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 8 Total-length: 145043901 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40968989 Median-sequence-length: 4378863 Max-sequence-length: 59896726 Min-sequence-length: 25312

2023-07-05 13:44:18.924690: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
2023-07-05 13:44:18.925013: Running the command: "cactus_analyseAssembly NA18906.2.sanitized.fa"
2023-07-05 13:44:18.924188: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a8be/5d88/tmpyw0oibsn/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p'" in 1.4389 seconds and 153.9 Mi memory
2023-07-05 13:44:18.924396: Running the command: "cactus_analyseAssembly HG02886.2.sanitized.fa"
2023-07-05 13:44:18.926830: Running the command: "cactus_analyseAssembly HG00733.2.sanitized.fa"
2023-07-05 13:44:18.929900: Running the command: "cactus_analyseAssembly HG01071.1.sanitized.fa"
2023-07-05 13:44:18.931108: Running the command: "cactus_analyseAssembly HG00735.1.sanitized.fa"
Got message from job at time 07-05-2023 13:44:18: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 4 Total-length: 146193269 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 79994228 Median-sequence-length: 59609257 Max-sequence-length: 79994228 Min-sequence-length: 2100974

2023-07-05 13:44:18.942823: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/ce81/242c/tmpbfyrw4ma/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p'" in 2.1982 seconds and 68.2 Mi memory
2023-07-05 13:44:18.945862: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9c6c/f428/tmpg9257hiw/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p'" in 1.4163 seconds and 154.0 Mi memory
2023-07-05 13:44:18.948560: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/b800/4073/tmpxwhcr7rs/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p'" in 2.1979 seconds and 74.3 Mi memory
Got message from job at time 07-05-2023 13:44:18: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 5 Total-length: 144685128 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40992292 Median-sequence-length: 24284667 Max-sequence-length: 59453256 Min-sequence-length: 2119617

2023-07-05 13:44:18.953130: Running the command: "cactus_analyseAssembly HG01952.2.sanitized.fa"
2023-07-05 13:44:18.954340: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/fd28/503d/tmp57ttgpdz/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p'" in 2.2907 seconds and 154.0 Mi memory
2023-07-05 13:44:18.952347: Running the command: "cactus_analyseAssembly HG00735.2.sanitized.fa"
2023-07-05 13:44:18.954390: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/cb4c/d5dd/tmpw7gsk0xs/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p'" in 1.5469 seconds and 74.6 Mi memory
2023-07-05 13:44:18.959137: Running the command: "cactus_analyseAssembly HG02630.1.sanitized.fa"
2023-07-05 13:44:18.957420: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0a3d/d9ae/tmpgsbxsbfi/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p'" in 1.4613 seconds and 154.0 Mi memory
2023-07-05 13:44:18.960487: Running the command: "cactus_analyseAssembly HG01978.1.sanitized.fa"
Got message from job at time 07-05-2023 13:44:18: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 7 Total-length: 145819727 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32039708 Median-sequence-length: 8792233 Max-sequence-length: 68548575 Min-sequence-length: 2107925

2023-07-05 13:44:18.963606: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/d8b8/f5b9/tmpp_q3vbud/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p'" in 2.2198 seconds and 58.1 Mi memory
2023-07-05 13:44:18.964847: Running the command: "cactus_analyseAssembly HG02486.2.sanitized.fa"
2023-07-05 13:44:18.964350: Running the command: "cactus_analyseAssembly HG02257.1.sanitized.fa"
2023-07-05 13:44:18.973196: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/7590/07a5/tmp77t70y28/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p'" in 2.2291 seconds and 61.5 Mi memory
2023-07-05 13:44:18.973524: Running the command: "cactus_analyseAssembly HG00735.2.sanitized.fa"
2023-07-05 13:44:18.983394: Running the command: "cactus_analyseAssembly HG02145.1.sanitized.fa"
Got message from job at time 07-05-2023 13:44:18: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 8 Total-length: 146240803 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40980609 Median-sequence-length: 11989654 Max-sequence-length: 56192576 Min-sequence-length: 1806045

2023-07-05 13:44:19.025125: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8c51/9430/tmpkuxr1wbm/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p'" in 2.2811 seconds and 154.0 Mi memory
2023-07-05 13:44:19.035076: Running the command: "cactus_analyseAssembly HG01071.1.sanitized.fa"
2023-07-05 13:44:19.034158: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/108a/8351/tmp63k02gpj/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p'" in 1.4012 seconds and 51.9 Mi memory
2023-07-05 13:44:19.040382: Running the command: "cactus_analyseAssembly NA21309.1.sanitized.fa"
2023-07-05 13:44:19.050909: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8c3c/d75b/tmph5nk0xx9/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p'" in 2.2731 seconds and 57.8 Mi memory
2023-07-05 13:44:19.057022: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/5406/8644/tmpddzf9yen/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p'" in 2.2713 seconds and 73.8 Mi memory
2023-07-05 13:44:19.058908: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/dad5/0213/tmpaiugg5lj/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p'" in 2.2919 seconds and 154.0 Mi memory
2023-07-05 13:44:19.059736: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/6286/2706/tmpiyz8g1xc/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p'" in 2.2826 seconds and 154.0 Mi memory
2023-07-05 13:44:19.061285: Running the command: "cactus_analyseAssembly HG03453.1.sanitized.fa"
2023-07-05 13:44:19.067268: Running the command: "cactus_analyseAssembly HG03516.2.sanitized.fa"
2023-07-05 13:44:19.069126: Running the command: "cactus_analyseAssembly HG02257.2.sanitized.fa"
2023-07-05 13:44:19.070278: Running the command: "cactus_analyseAssembly HG00621.1.sanitized.fa"
2023-07-05 13:44:19.084373: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/7c4e/228d/tmp4iqo5zfs/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p'" in 2.2834 seconds and 74.6 Mi memory
2023-07-05 13:44:19.094377: Running the command: "cactus_analyseAssembly HG02630.2.sanitized.fa"
2023-07-05 13:44:19.100169: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/bee4/d143/tmp3t4znrg0/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p'" in 2.2805 seconds and 51.9 Mi memory
2023-07-05 13:44:19.110026: Running the command: "cactus_analyseAssembly HG00673.2.sanitized.fa"
2023-07-05 13:44:19.122603: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/64b1/da5a/tmp5x9474l5/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p'" in 2.3117 seconds and 154.0 Mi memory
2023-07-05 13:44:19.132392: Running the command: "cactus_analyseAssembly HG00621.2.sanitized.fa"
2023-07-05 13:44:19.133495: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/003d/d7d4/tmpix2g_esh/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p'" in 2.3067 seconds and 58.6 Mi memory
2023-07-05 13:44:19.142418: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/163a/6094/tmpfa_8r3ma/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p'" in 2.3472 seconds and 68.2 Mi memory
2023-07-05 13:44:19.143389: Running the command: "cactus_analyseAssembly HG02818.1.sanitized.fa"
2023-07-05 13:44:19.150334: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/1042/cf64/tmpzinztlwm/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p'" in 2.3332 seconds and 65.1 Mi memory
2023-07-05 13:44:19.152258: Running the command: "cactus_analyseAssembly HG01891.2.sanitized.fa"
2023-07-05 13:44:19.160266: Running the command: "cactus_analyseAssembly HG01928.2.sanitized.fa"
2023-07-05 13:44:19.162447: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8e35/a7e1/tmp47qt27a6/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p'" in 2.3846 seconds and 154.0 Mi memory
2023-07-05 13:44:19.172647: Running the command: "cactus_analyseAssembly HG01106.1.sanitized.fa"
2023-07-05 13:44:19.177626: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/06eb/8705/tmpdq2o11df/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p'" in 2.3745 seconds and 154.0 Mi memory
2023-07-05 13:44:19.187155: Running the command: "cactus_analyseAssembly HG02622.1.sanitized.fa"
2023-07-05 13:44:19.209073: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/0e60/ae99/tmpitt5bltw/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p'" in 2.3988 seconds and 154.0 Mi memory
2023-07-05 13:44:19.215161: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/747b/934d/tmppex9fqug/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p'" in 2.3838 seconds and 54.8 Mi memory
2023-07-05 13:44:19.216191: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/dab0/30d6/tmpi21mwqki/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p'" in 2.3869 seconds and 167.6 Mi memory
2023-07-05 13:44:19.219839: Running the command: "cactus_analyseAssembly HG02717.1.sanitized.fa"
2023-07-05 13:44:19.225393: Running the command: "cactus_analyseAssembly HG02572.2.sanitized.fa"
2023-07-05 13:44:19.225440: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/2237/0aa3/tmp95fc6m81/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 2.4658 seconds and 460.2 Mi memory
2023-07-05 13:44:19.226286: Running the command: "cactus_analyseAssembly HG01361.1.sanitized.fa"
2023-07-05 13:44:19.234687: Running the command: "cactus_analyseAssembly GRCh38.sanitized.fa"
2023-07-05 13:44:19.244820: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/add8/89be/tmpur3ir4xf/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p'" in 2.4147 seconds and 154.0 Mi memory
2023-07-05 13:44:19.254777: Running the command: "cactus_analyseAssembly HG00438.1.sanitized.fa"
2023-07-05 13:44:19.255830: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 0.8545 seconds and 51.9 Mi memory
2023-07-05 13:44:19.263969: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 0.8673 seconds and 55.7 Mi memory
2023-07-05 13:44:19.266649: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/98fb/91f0/tmp7799qjze/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p'" in 2.4544 seconds and 460.2 Mi memory
2023-07-05 13:44:19.276408: Running the command: "cactus_analyseAssembly CHM13.sanitized.fa"
2023-07-05 13:44:19.285294: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/317d/7bb3/tmps5w01v1g/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p"
2023-07-05 13:44:19.305063: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 0.866 seconds and 59.1 Mi memory
2023-07-05 13:44:19.341221: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/9201/4bcc/tmpeh1wyes2/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p"
2023-07-05 13:44:19.362918: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/99ee/62a6/tmphx1_v48z/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p"
2023-07-05 13:44:19.364460: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/7aae/be40/tmpxtcgbo9o/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p"
2023-07-05 13:44:19.372668: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/bc3f/674e/tmp9jk7g4cp/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
2023-07-05 13:44:19.375599: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/28a3/6652/tmpuq5d70w2/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p'" in 1.0435 seconds and 51.9 Mi memory
2023-07-05 13:44:19.380968: Running the command: "cactus_analyseAssembly HG01928.1.sanitized.fa"
2023-07-05 13:44:19.383620: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/f77d/8c90/tmppjxxmbnf/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p'" in 1.1023 seconds and 51.9 Mi memory
2023-07-05 13:44:19.384668: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0fdf/2977/tmp6x7iqfvq/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
2023-07-05 13:44:19.386765: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/c98e/eb82/tmpdmuq9zas/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p"
2023-07-05 13:44:19.388991: Running the command: "cactus_analyseAssembly HG00741.1.sanitized.fa"
2023-07-05 13:44:19.392091: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0cc9/1a79/tmpg8ej77u3/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p"
2023-07-05 13:44:19.400972: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/5215/497c/tmp3so5txbl/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p"
2023-07-05 13:44:19.402751: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/ed5e/1113/tmp62cl36iv/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
2023-07-05 13:44:19.404502: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/d271/b6eb/tmp9m3te1ev/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p"
2023-07-05 13:44:19.404640: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/ae18/cc52/tmpqij92_lw/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p"
2023-07-05 13:44:19.406119: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/9eb9/4c0c/tmpaj78nspj/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p"
2023-07-05 13:44:19.406331: Successfully ran: "cactus_analyseAssembly HG01106.1.sanitized.fa" in 0.9264 seconds and 153.9 Mi memory
2023-07-05 13:44:19.408191: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/c38f/f3dd/tmp55flmm8f/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
2023-07-05 13:44:19.409537: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/ca8b/9ce7/tmp52b3ckbb/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:44:19.413372: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/9b11/ed4f/tmpsm8z2ok8/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p'" in 1.338 seconds and 51.9 Mi memory
2023-07-05 13:44:19.414544: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/912e/7128/tmp26nt6hjc/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-05 13:44:19.415998: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/c38b/0d7f/tmpaih854ye/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p"
2023-07-05 13:44:19.419910: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/b114/5592/tmpo81rlywp/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p"
2023-07-05 13:44:19.421043: Running the command: "cactus_analyseAssembly HG03492.2.sanitized.fa"
2023-07-05 13:44:19.421226: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/a8f9/617a/tmplk_b8i33/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p"
2023-07-05 13:44:19.421725: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/e23d/b3c1/tmp2b1i4vzm/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p"
2023-07-05 13:44:19.422223: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2f1d/2558/tmptsytp7dk/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p"
2023-07-05 13:44:19.423842: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/d038/646d/tmpkvb8n8dx/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
2023-07-05 13:44:19.424317: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/6c90/38f3/tmp2_c4o85o/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p"
2023-07-05 13:44:19.425776: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/037c/817c/tmpbthhk2w8/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p"
2023-07-05 13:44:19.426420: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/7ea6/3d1f/tmp_b967wvm/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-05 13:44:19.429981: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2356/ed34/tmp7c3h21pw/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p"
2023-07-05 13:44:19.432980: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/ff3f/9c0c/tmpswlxq623/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p"
2023-07-05 13:44:19.436108: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/cfac/55a7/tmp44uv1qrj/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p"
2023-07-05 13:44:19.437307: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/5453/862f/tmphgjbmk9z/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p"
2023-07-05 13:44:19.435852: Successfully ran: "cactus_analyseAssembly HG01978.2.sanitized.fa" in 0.9494 seconds and 153.9 Mi memory
2023-07-05 13:44:19.438437: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/6c42/7eb3/tmptbyl6pow/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p"
2023-07-05 13:44:19.438423: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0b00/df32/tmpdk30rr7k/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p"
2023-07-05 13:44:19.438926: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0f2c/ae90/tmpkxuiok70/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p"
2023-07-05 13:44:19.439729: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/1c51/993c/tmpn7mcdfua/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-05 13:44:19.440528: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/b9b2/27ca/tmpsvexrcrt/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p"
2023-07-05 13:44:19.440812: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/6af8/1a9f/tmpkh_p3xzx/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-05 13:44:19.441801: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/3f87/864f/tmphsxp_2x0/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p"
2023-07-05 13:44:19.442184: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/01ce/6929/tmp5f0axn61/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p"
2023-07-05 13:44:19.442242: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/015f/e4db/tmp17e85avl/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p"
2023-07-05 13:44:19.442555: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/51bd/3678/tmpy89nnr6l/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p"
2023-07-05 13:44:19.442638: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/f9cc/c686/tmppcdnpbft/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p"
2023-07-05 13:44:19.443189: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/94e5/54c1/tmpaq0xd_nq/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p"
2023-07-05 13:44:19.443602: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/3ba2/e62a/tmp7fa0fi6d/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
2023-07-05 13:44:19.443769: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/6905/59ab/tmpzlg9gdp7/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:44:19.444614: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0cd1/c642/tmpc0u_d4tv/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p"
2023-07-05 13:44:19.446910: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/1620/0317/tmpa28dfr53/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p"
2023-07-05 13:44:19.446948: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/7bc3/6f3e/tmp3i1hezx4/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
2023-07-05 13:44:19.448056: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/25d2/c134/tmpwvfr5h2i/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p"
2023-07-05 13:44:19.448340: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/c95f/2e54/tmp2ma72cck/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:44:19.448478: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/b8c8/21e2/tmploortx6x/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
2023-07-05 13:44:19.449057: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/377c/fa78/tmpu7jbijm_/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-05 13:44:19.449070: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/43a3/a66d/tmp028kxc9r/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p"
2023-07-05 13:44:19.450153: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/9f76/ffe6/tmpjn57ip9d/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p"
2023-07-05 13:44:19.450832: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/5496/c081/tmpdtgwcdf2/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
2023-07-05 13:44:19.450874: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/d8cd/1551/tmpt9xpy96d/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p"
2023-07-05 13:44:19.451237: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/d6af/c59b/tmpjs4n2b6o/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p"
2023-07-05 13:44:19.451629: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/acf0/27a8/tmp4_tkhvoj/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p"
2023-07-05 13:44:19.486715: Successfully ran: "cactus_analyseAssembly HG02886.2.sanitized.fa" in 0.8635 seconds and 51.9 Mi memory
2023-07-05 13:44:19.500949: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/744f/4ff6/tmp91y2f5yv/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p'" in 1.1466 seconds and 51.9 Mi memory
2023-07-05 13:44:19.503001: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/97e8/b940/tmp9_29aa1e/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-05 13:44:19.506584: Running the command: "cactus_analyseAssembly HG02145.1.sanitized.fa"
2023-07-05 13:44:19.517815: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/86ef/430c/tmpc3wxntg7/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p'" in 1.3684 seconds and 60.4 Mi memory
2023-07-05 13:44:19.526017: Running the command: "cactus_analyseAssembly HG00733.2.sanitized.fa"
2023-07-05 13:44:19.526208: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 0.8584 seconds and 51.9 Mi memory
2023-07-05 13:44:19.538905: Successfully ran: "cactus_analyseAssembly HG03579.2.sanitized.fa" in 0.8799 seconds and 64.7 Mi memory
2023-07-05 13:44:19.600376: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/7103/2a98/tmp7go5ar7a/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p'" in 1.2744 seconds and 71.2 Mi memory
2023-07-05 13:44:19.601645: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/b0c6/8e2b/tmpftyuiz95/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p"
2023-07-05 13:44:19.603659: Running the command: "cactus_analyseAssembly HG03098.1.sanitized.fa"
2023-07-05 13:44:19.606469: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/ccd6/3b3f/tmp993oqc4a/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p"
2023-07-05 13:44:19.691367: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/9598/97a7/tmp46wz7r64/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p"
2023-07-05 13:44:19.692420: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c55d/7e17/tmpsd_ejr59/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:44:19.692609: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/0a5d/8e87/tmpchtxn38c/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p"
2023-07-05 13:44:19.693782: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/28a2/4f9f/tmpdys3qdp6/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-05 13:44:19.746891: Successfully ran: "cactus_analyseAssembly HG02886.1.sanitized.fa" in 0.9298 seconds and 51.9 Mi memory
2023-07-05 13:44:19.748533: Successfully ran: "cactus_analyseAssembly HG02486.2.sanitized.fa" in 0.9417 seconds and 77.4 Mi memory
2023-07-05 13:44:19.751334: Successfully ran: "cactus_analyseAssembly HG03098.1.sanitized.fa" in 0.9451 seconds and 51.9 Mi memory
2023-07-05 13:44:19.751520: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 0.9254 seconds and 57.0 Mi memory
2023-07-05 13:44:19.774791: Successfully ran: "cactus_analyseAssembly HG02145.1.sanitized.fa" in 0.9293 seconds and 51.9 Mi memory
2023-07-05 13:44:19.776535: Successfully ran: "cactus_analyseAssembly HG03098.1.sanitized.fa" in 0.9153 seconds and 51.9 Mi memory
2023-07-05 13:44:19.781370: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 0.9232 seconds and 51.9 Mi memory
2023-07-05 13:44:19.782560: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/afab/4ada/tmp5l6ngv62/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p'" in 1.2909 seconds and 72.8 Mi memory
2023-07-05 13:44:19.890886: Successfully ran: "cactus_analyseAssembly HG00741.1.sanitized.fa" in 0.9836 seconds and 153.9 Mi memory
2023-07-05 13:44:19.894418: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 0.9803 seconds and 153.9 Mi memory
2023-07-05 13:44:19.895660: Successfully ran: "cactus_analyseAssembly NA18906.2.sanitized.fa" in 0.9697 seconds and 153.9 Mi memory
2023-07-05 13:44:19.894868: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 0.9881 seconds and 153.9 Mi memory
2023-07-05 13:44:19.956576: Running the command: "cactus_analyseAssembly HG01361.2.sanitized.fa"
2023-07-05 13:44:19.973811: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/25d0/96a5/tmp0vetx00a/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p'" in 1.4021 seconds and 64.0 Mi memory
2023-07-05 13:44:19.981562: Running the command: "cactus_analyseAssembly HG01123.1.sanitized.fa"
2023-07-05 13:44:20.141153: Successfully ran: "cactus_analyseAssembly HG01928.1.sanitized.fa" in 0.7594 seconds and 51.9 Mi memory
2023-07-05 13:44:20.150762: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/6fb5/4509/tmp9nmsicyp/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p'" in 1.5059 seconds and 51.9 Mi memory
2023-07-05 13:44:20.156702: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/3700/f69f/tmp15yjpc77/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p'" in 1.4068 seconds and 51.9 Mi memory
2023-07-05 13:44:20.157624: Running the command: "cactus_analyseAssembly HG03540.1.sanitized.fa"
2023-07-05 13:44:20.160209: Successfully ran: "cactus_analyseAssembly HG00741.1.sanitized.fa" in 0.7704 seconds and 51.9 Mi memory
2023-07-05 13:44:20.163444: Running the command: "cactus_analyseAssembly NA18906.2.sanitized.fa"
2023-07-05 13:44:20.170984: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2189/9709/tmpknmd6j0y/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p'" in 1.4994 seconds and 51.9 Mi memory
2023-07-05 13:44:20.178112: Running the command: "cactus_analyseAssembly NA21309.2.sanitized.fa"
2023-07-05 13:44:20.193351: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/70d5/97b9/tmp9ob84jgg/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p'" in 1.4339 seconds and 51.9 Mi memory
2023-07-05 13:44:20.200427: Running the command: "cactus_analyseAssembly HG03453.1.sanitized.fa"
2023-07-05 13:44:20.208208: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/d15c/f3d1/tmp3bd71fa8/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p'" in 1.447 seconds and 51.9 Mi memory
2023-07-05 13:44:20.214981: Running the command: "cactus_analyseAssembly HG00673.2.sanitized.fa"
2023-07-05 13:44:20.217698: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/84ad/3541/tmps6_j7hxb/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p'" in 1.4627 seconds and 58.4 Mi memory
2023-07-05 13:44:20.241368: Running the command: "cactus_analyseAssembly HG01109.2.sanitized.fa"
2023-07-05 13:44:20.249238: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/6061/9ace/tmpsq5gfu_1/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p'" in 1.4628 seconds and 19.6 Mi memory
2023-07-05 13:44:20.251056: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1913/3d6c/tmpw5kv4qwv/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p'" in 1.5103 seconds and 51.9 Mi memory
2023-07-05 13:44:20.255873: Running the command: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa"
2023-07-05 13:44:20.291462: Running the command: "cactus_analyseAssembly HG03492.1.sanitized.fa"
2023-07-05 13:44:20.294341: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2b9f/7718/tmpts21v9cn/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p'" in 1.4738 seconds and 51.9 Mi memory
2023-07-05 13:44:20.299819: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2800/2e8e/tmpblqh45gb/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 1.6027 seconds and 153.9 Mi memory
2023-07-05 13:44:20.300055: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/f76a/9c85/tmpc_10c75x/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p'" in 1.5102 seconds and 51.9 Mi memory
2023-07-05 13:44:20.354451: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/19f1/ae53/tmp1gkm5jc4/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p'" in 1.5294 seconds and 51.9 Mi memory
2023-07-05 13:44:20.361028: Running the command: "cactus_analyseAssembly HG03486.1.sanitized.fa"
2023-07-05 13:44:20.363049: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/95c3/486d/tmpqqecqtt7/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p'" in 1.5504 seconds and 56.0 Mi memory
2023-07-05 13:44:20.364482: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 0.8373 seconds and 60.4 Mi memory
2023-07-05 13:44:20.406586: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 0.8589 seconds and 51.9 Mi memory
2023-07-05 13:44:20.407670: Running the command: "cactus_analyseAssembly HG02622.1.sanitized.fa"
2023-07-05 13:44:20.409358: Successfully ran: "cactus_analyseAssembly HG01952.2.sanitized.fa" in 1.4548 seconds and 68.1 Mi memory
2023-07-05 13:44:20.414081: Successfully ran: "cactus_analyseAssembly HG00735.2.sanitized.fa" in 1.4397 seconds and 58.0 Mi memory
2023-07-05 13:44:20.496623: Running the command: "cactus_analyseAssembly HG03516.1.sanitized.fa"
2023-07-05 13:44:20.500732: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 0.8857 seconds and 51.9 Mi memory
2023-07-05 13:44:20.516204: Successfully ran: "cactus_analyseAssembly HG00735.2.sanitized.fa" in 0.9201 seconds and 153.9 Mi memory
2023-07-05 13:44:20.518017: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/858b/7eeb/tmpx29y5r1m/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p'" in 1.6286 seconds and 73.6 Mi memory
2023-07-05 13:44:20.519546: Successfully ran: "cactus_analyseAssembly HG01358.1.sanitized.fa" in 0.9119 seconds and 71.2 Mi memory
2023-07-05 13:44:20.523906: Running the command: "cactus_analyseAssembly NA20129.2.sanitized.fa"
2023-07-05 13:44:20.530072: Successfully ran: "cactus_analyseAssembly HG02486.2.sanitized.fa" in 1.5641 seconds and 153.9 Mi memory
2023-07-05 13:44:20.557468: Successfully ran: "cactus_analyseAssembly HG03453.1.sanitized.fa" in 1.4952 seconds and 57.8 Mi memory
2023-07-05 13:44:20.557522: Successfully ran: "cactus_analyseAssembly HG03098.1.sanitized.fa" in 0.9529 seconds and 153.9 Mi memory
2023-07-05 13:44:20.564066: Successfully ran: "cactus_analyseAssembly HG01071.1.sanitized.fa" in 1.5276 seconds and 153.9 Mi memory
2023-07-05 13:44:20.563402: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/3195/231c/tmp3tnyg2ke/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p'" in 1.6716 seconds and 154.0 Mi memory
2023-07-05 13:44:20.569513: Running the command: "cactus_analyseAssembly HG01891.1.sanitized.fa"
2023-07-05 13:44:20.570440: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/8465/aec9/tmpec45_mmj/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p'" in 1.6832 seconds and 153.9 Mi memory
2023-07-05 13:44:20.571712: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 1.5035 seconds and 73.8 Mi memory
2023-07-05 13:44:20.576340: Running the command: "cactus_analyseAssembly CHM13.sanitized.fa"
2023-07-05 13:44:20.582686: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 1.5112 seconds and 153.9 Mi memory
2023-07-05 13:44:20.615343: Successfully ran: "cactus_analyseAssembly HG02257.2.sanitized.fa" in 1.5453 seconds and 153.9 Mi memory
2023-07-05 13:44:20.620819: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 1.5255 seconds and 74.5 Mi memory
2023-07-05 13:44:20.644947: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 1.5339 seconds and 51.9 Mi memory
2023-07-05 13:44:20.647237: Successfully ran: "cactus_analyseAssembly HG00438.2.sanitized.fa" in 0.8545 seconds and 72.7 Mi memory
2023-07-05 13:44:20.656637: Successfully ran: "cactus_analyseAssembly HG02559.1.sanitized.fa" in 0.9616 seconds and 153.9 Mi memory
2023-07-05 13:44:20.673537: Successfully ran: "cactus_analyseAssembly HG01891.2.sanitized.fa" in 1.5203 seconds and 68.1 Mi memory
2023-07-05 13:44:20.682193: Successfully ran: "cactus_analyseAssembly HG02818.1.sanitized.fa" in 1.5378 seconds and 58.6 Mi memory
2023-07-05 13:44:20.702865: Successfully ran: "cactus_analyseAssembly HG01928.2.sanitized.fa" in 1.5417 seconds and 65.0 Mi memory
2023-07-05 13:44:20.722437: Successfully ran: "cactus_analyseAssembly HG02886.1.sanitized.fa" in 0.8419 seconds and 51.9 Mi memory
2023-07-05 13:44:20.724616: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 1.591 seconds and 153.9 Mi memory
2023-07-05 13:44:20.759309: Successfully ran: "cactus_analyseAssembly HG02055.1.sanitized.fa" in 0.8215 seconds and 65.8 Mi memory
2023-07-05 13:44:20.782741: Successfully ran: "cactus_analyseAssembly HG02622.1.sanitized.fa" in 1.5943 seconds and 153.9 Mi memory
2023-07-05 13:44:20.786317: Successfully ran: "cactus_analyseAssembly HG01106.1.sanitized.fa" in 1.6127 seconds and 153.9 Mi memory
2023-07-05 13:44:20.788892: Successfully ran: "cactus_analyseAssembly HG02717.1.sanitized.fa" in 1.568 seconds and 153.9 Mi memory
2023-07-05 13:44:20.796950: Successfully ran: "cactus_analyseAssembly HG02572.2.sanitized.fa" in 1.5706 seconds and 54.7 Mi memory
2023-07-05 13:44:20.829081: Successfully ran: "cactus_analyseAssembly HG01123.1.sanitized.fa" in 0.8465 seconds and 64.0 Mi memory
2023-07-05 13:44:20.857700: Successfully ran: "cactus_analyseAssembly HG01361.1.sanitized.fa" in 1.6304 seconds and 167.6 Mi memory
2023-07-05 13:44:20.858344: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 0.9006 seconds and 76.1 Mi memory
2023-07-05 13:44:20.889001: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/7bc3/6f3e/tmp3i1hezx4/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p'" in 1.4406 seconds and 7.1 Mi memory
2023-07-05 13:44:20.896411: Running the command: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa"
2023-07-05 13:44:20.904242: Successfully ran: "cactus_analyseAssembly HG00438.1.sanitized.fa" in 1.6482 seconds and 153.9 Mi memory
2023-07-05 13:44:20.963003: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/d038/646d/tmpkvb8n8dx/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p'" in 1.5379 seconds and 51.9 Mi memory
2023-07-05 13:44:20.969017: Running the command: "cactus_analyseAssembly HG03486.1.sanitized.fa"
2023-07-05 13:44:20.976731: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/cfac/55a7/tmp44uv1qrj/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p'" in 1.5394 seconds and 60.2 Mi memory
2023-07-05 13:44:20.982686: Running the command: "cactus_analyseAssembly HG01928.1.sanitized.fa"
2023-07-05 13:44:20.983872: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/e23d/b3c1/tmp2b1i4vzm/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 1.5607 seconds and 52.7 Mi memory
2023-07-05 13:44:20.989783: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
2023-07-05 13:44:20.993097: Successfully ran: "cactus_analyseAssembly NA18906.2.sanitized.fa" in 0.8286 seconds and 51.9 Mi memory
2023-07-05 13:44:20.998995: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/01ce/6929/tmp5f0axn61/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p'" in 1.5553 seconds and 71.0 Mi memory
2023-07-05 13:44:20.999770: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/1c51/993c/tmpn7mcdfua/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p'" in 1.5588 seconds and 60.2 Mi memory
2023-07-05 13:44:21.001487: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/43a3/a66d/tmp028kxc9r/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p'" in 1.5509 seconds and 51.9 Mi memory
2023-07-05 13:44:21.005158: Running the command: "cactus_analyseAssembly HG02055.2.sanitized.fa"
2023-07-05 13:44:21.005315: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/51bd/3678/tmpy89nnr6l/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p'" in 1.5615 seconds and 51.9 Mi memory
2023-07-05 13:44:21.006012: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 1.7702 seconds and 460.2 Mi memory
2023-07-05 13:44:21.006126: Running the command: "cactus_analyseAssembly HG00621.1.sanitized.fa"
2023-07-05 13:44:21.007242: Running the command: "cactus_analyseAssembly NA21309.1.sanitized.fa"
2023-07-05 13:44:21.007228: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/25d2/c134/tmpwvfr5h2i/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p'" in 1.5579 seconds and 154.0 Mi memory
2023-07-05 13:44:21.008582: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/037c/817c/tmpbthhk2w8/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p'" in 1.5814 seconds and 51.9 Mi memory
2023-07-05 13:44:21.011356: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/7ea6/3d1f/tmp_b967wvm/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p'" in 1.5834 seconds and 60.1 Mi memory
2023-07-05 13:44:21.011808: Running the command: "cactus_analyseAssembly NA20129.2.sanitized.fa"
2023-07-05 13:44:21.012887: Successfully ran: "cactus_analyseAssembly HG03540.1.sanitized.fa" in 0.8542 seconds and 51.9 Mi memory
2023-07-05 13:44:21.013161: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/b9b2/27ca/tmpsvexrcrt/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p'" in 1.5711 seconds and 69.9 Mi memory
2023-07-05 13:44:21.013300: Running the command: "cactus_analyseAssembly HG02257.2.sanitized.fa"
2023-07-05 13:44:21.015117: Running the command: "cactus_analyseAssembly HG01243.2.sanitized.fa"
2023-07-05 13:44:21.016348: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/acf0/27a8/tmp4_tkhvoj/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p'" in 1.5635 seconds and 51.9 Mi memory
2023-07-05 13:44:21.017071: Running the command: "cactus_analyseAssembly HG00735.2.sanitized.fa"
2023-07-05 13:44:21.018850: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0b00/df32/tmpdk30rr7k/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p'" in 1.5789 seconds and 51.9 Mi memory
2023-07-05 13:44:21.022372: Running the command: "cactus_analyseAssembly HG03540.2.sanitized.fa"
2023-07-05 13:44:21.023599: Running the command: "cactus_analyseAssembly HG01928.2.sanitized.fa"
2023-07-05 13:44:21.025027: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/c38b/0d7f/tmpaih854ye/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 1.6077 seconds and 70.7 Mi memory
2023-07-05 13:44:21.025179: Running the command: "cactus_analyseAssembly HG03453.2.sanitized.fa"
2023-07-05 13:44:21.025527: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/a8f9/617a/tmplk_b8i33/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p'" in 1.6029 seconds and 58.1 Mi memory
2023-07-05 13:44:21.028638: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/94e5/54c1/tmpaq0xd_nq/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p'" in 1.584 seconds and 51.9 Mi memory
2023-07-05 13:44:21.031188: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-05 13:44:21.031460: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/d6af/c59b/tmpjs4n2b6o/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p'" in 1.579 seconds and 51.9 Mi memory
2023-07-05 13:44:21.031720: Running the command: "cactus_analyseAssembly NA18906.1.sanitized.fa"
2023-07-05 13:44:21.031987: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/61d1/dbdf/tmp7wl9pk4e/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p'" in 1.5784 seconds and 51.9 Mi memory
2023-07-05 13:44:21.034827: Running the command: "cactus_analyseAssembly HG02486.1.sanitized.fa"
2023-07-05 13:44:21.035961: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/317d/7bb3/tmps5w01v1g/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p'" in 1.7492 seconds and 26.4 Mi memory
2023-07-05 13:44:21.037572: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/f9cc/c686/tmppcdnpbft/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p'" in 1.5937 seconds and 60.2 Mi memory
2023-07-05 13:44:21.037958: Running the command: "cactus_analyseAssembly HG01361.2.sanitized.fa"
2023-07-05 13:44:21.038314: Running the command: "cactus_analyseAssembly HG01952.2.sanitized.fa"
2023-07-05 13:44:21.042172: Running the command: "cactus_analyseAssembly HG03579.1.sanitized.fa"
2023-07-05 13:44:21.043581: Running the command: "cactus_analyseAssembly HG01071.2.sanitized.fa"
2023-07-05 13:44:21.043610: Successfully ran: "cactus_analyseAssembly HG03453.1.sanitized.fa" in 0.8422 seconds and 51.9 Mi memory
2023-07-05 13:44:21.045108: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/5453/862f/tmphgjbmk9z/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p'" in 1.6066 seconds and 51.9 Mi memory
2023-07-05 13:44:21.045201: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/ca8b/9ce7/tmp52b3ckbb/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p'" in 1.6343 seconds and 51.9 Mi memory
2023-07-05 13:44:21.046931: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/c38f/f3dd/tmp55flmm8f/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p'" in 1.6373 seconds and 70.6 Mi memory
2023-07-05 13:44:21.047328: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/5496/c081/tmpdtgwcdf2/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p'" in 1.5953 seconds and 59.9 Mi memory
2023-07-05 13:44:21.047667: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0cd1/c642/tmpc0u_d4tv/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p'" in 1.6019 seconds and 53.9 Mi memory
2023-07-05 13:44:21.047711: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/3ba2/e62a/tmp7fa0fi6d/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p'" in 1.6026 seconds and 51.8 Mi memory
2023-07-05 13:44:21.048048: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/1620/0317/tmpa28dfr53/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p'" in 1.5999 seconds and 51.9 Mi memory
2023-07-05 13:44:21.048801: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/3f87/864f/tmphsxp_2x0/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p'" in 1.6057 seconds and 51.9 Mi memory
2023-07-05 13:44:21.049657: Successfully ran: "cactus_analyseAssembly CHM13.sanitized.fa" in 1.7721 seconds and 460.2 Mi memory
2023-07-05 13:44:21.051372: Running the command: "cactus_analyseAssembly HG02630.1.sanitized.fa"
2023-07-05 13:44:21.051391: Running the command: "cactus_analyseAssembly HG02145.1.sanitized.fa"
2023-07-05 13:44:21.053461: Running the command: "cactus_analyseAssembly HG01123.2.sanitized.fa"
2023-07-05 13:44:21.053536: Running the command: "cactus_analyseAssembly HG00621.2.sanitized.fa"
2023-07-05 13:44:21.053809: Running the command: "cactus_analyseAssembly HG02148.1.sanitized.fa"
2023-07-05 13:44:21.054171: Running the command: "cactus_analyseAssembly HG02109.2.sanitized.fa"
2023-07-05 13:44:21.054304: Running the command: "cactus_analyseAssembly HG01952.1.sanitized.fa"
2023-07-05 13:44:21.054692: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/d8cd/1551/tmpt9xpy96d/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p'" in 1.6025 seconds and 54.0 Mi memory
2023-07-05 13:44:21.055637: Running the command: "cactus_analyseAssembly HG02622.1.sanitized.fa"
2023-07-05 13:44:21.056998: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/6af8/1a9f/tmpkh_p3xzx/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p'" in 1.6149 seconds and 69.7 Mi memory
2023-07-05 13:44:21.057287: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/ae18/cc52/tmpqij92_lw/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p'" in 1.6512 seconds and 51.9 Mi memory
2023-07-05 13:44:21.057171: Successfully ran: "cactus_analyseAssembly NA21309.2.sanitized.fa" in 0.878 seconds and 51.9 Mi memory
2023-07-05 13:44:21.057455: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/6c42/7eb3/tmptbyl6pow/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p'" in 1.6178 seconds and 54.5 Mi memory
2023-07-05 13:44:21.059029: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/ff3f/9c0c/tmpswlxq623/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p'" in 1.6247 seconds and 59.9 Mi memory
2023-07-05 13:44:21.059465: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/9f76/ffe6/tmpjn57ip9d/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p'" in 1.6081 seconds and 51.8 Mi memory
2023-07-05 13:44:21.059684: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/bc3f/674e/tmp9jk7g4cp/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p'" in 1.6856 seconds and 51.8 Mi memory
2023-07-05 13:44:21.060498: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 0.8444 seconds and 51.9 Mi memory
2023-07-05 13:44:21.061041: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2f1d/2558/tmptsytp7dk/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p'" in 1.6374 seconds and 51.9 Mi memory
2023-07-05 13:44:21.061357: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
2023-07-05 13:44:21.063089: Running the command: "cactus_analyseAssembly HG01106.2.sanitized.fa"
2023-07-05 13:44:21.063382: Running the command: "cactus_analyseAssembly HG02818.1.sanitized.fa"
2023-07-05 13:44:21.064245: Running the command: "cactus_analyseAssembly HG02148.2.sanitized.fa"
2023-07-05 13:44:21.064537: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2356/ed34/tmp7c3h21pw/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p'" in 1.6335 seconds and 51.9 Mi memory
2023-07-05 13:44:21.065754: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/fe54/e880/tmpnkolcivk/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p'" in 1.6071 seconds and 51.8 Mi memory
2023-07-05 13:44:21.065855: Running the command: "cactus_analyseAssembly HG01243.1.sanitized.fa"
2023-07-05 13:44:21.066493: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/912e/7128/tmp26nt6hjc/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p'" in 1.6505 seconds and 51.8 Mi memory
2023-07-05 13:44:21.066956: Running the command: "cactus_analyseAssembly HG02717.1.sanitized.fa"
2023-07-05 13:44:21.067256: Running the command: "cactus_analyseAssembly HG01123.1.sanitized.fa"
2023-07-05 13:44:21.067295: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/d271/b6eb/tmp9m3te1ev/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p'" in 1.6614 seconds and 154.0 Mi memory
2023-07-05 13:44:21.067837: Running the command: "cactus_analyseAssembly HG02572.1.sanitized.fa"
2023-07-05 13:44:21.069302: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/5215/497c/tmp3so5txbl/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p'" in 1.6669 seconds and 51.9 Mi memory
2023-07-05 13:44:21.070437: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/b8c8/21e2/tmploortx6x/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p'" in 1.6208 seconds and 60.1 Mi memory
2023-07-05 13:44:21.071157: Running the command: "cactus_analyseAssembly HG00673.2.sanitized.fa"
2023-07-05 13:44:21.071582: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/9eb9/4c0c/tmpaj78nspj/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p'" in 1.6644 seconds and 69.6 Mi memory
2023-07-05 13:44:21.071833: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b2f/5690/tmpzkx7stes/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p'" in 1.6159 seconds and 51.9 Mi memory
2023-07-05 13:44:21.073088: Running the command: "cactus_analyseAssembly HG02630.2.sanitized.fa"
2023-07-05 13:44:21.073565: Running the command: "cactus_analyseAssembly HG01258.1.sanitized.fa"
2023-07-05 13:44:21.074176: Running the command: "cactus_analyseAssembly HG02622.2.sanitized.fa"
2023-07-05 13:44:21.074642: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/6905/59ab/tmpzlg9gdp7/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p'" in 1.6294 seconds and 64.5 Mi memory
2023-07-05 13:44:21.075405: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 0.8497 seconds and 51.9 Mi memory
2023-07-05 13:44:21.076463: Running the command: "cactus_analyseAssembly HG03492.1.sanitized.fa"
2023-07-05 13:44:21.076904: Running the command: "cactus_analyseAssembly HG00438.2.sanitized.fa"
2023-07-05 13:44:21.077389: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/9201/4bcc/tmpeh1wyes2/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p'" in 1.7346 seconds and 51.9 Mi memory
2023-07-05 13:44:21.078370: Running the command: "cactus_analyseAssembly HG01071.1.sanitized.fa"
2023-07-05 13:44:21.078673: Running the command: "cactus_analyseAssembly HG00735.1.sanitized.fa"
2023-07-05 13:44:21.079243: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/99ee/62a6/tmphx1_v48z/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p'" in 1.7149 seconds and 51.9 Mi memory
2023-07-05 13:44:21.081488: Running the command: "cactus_analyseAssembly HG01109.1.sanitized.fa"
2023-07-05 13:44:21.084542: Running the command: "cactus_analyseAssembly HG00673.1.sanitized.fa"
2023-07-05 13:44:21.086208: Running the command: "cactus_analyseAssembly HG03486.2.sanitized.fa"
2023-07-05 13:44:21.087379: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0f2c/ae90/tmpkxuiok70/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p'" in 1.647 seconds and 59.9 Mi memory
2023-07-05 13:44:21.088972: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/5473/a2cb/tmpu_8hp3m0/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p'" in 1.6298 seconds and 51.9 Mi memory
2023-07-05 13:44:21.091005: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/6c90/38f3/tmp2_c4o85o/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p'" in 1.6652 seconds and 74.5 Mi memory
2023-07-05 13:44:21.093679: Running the command: "cactus_analyseAssembly HG00438.1.sanitized.fa"
2023-07-05 13:44:21.094550: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/7aae/be40/tmpxtcgbo9o/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p'" in 1.7289 seconds and 51.9 Mi memory
2023-07-05 13:44:21.095211: Running the command: "cactus_analyseAssembly HG03492.2.sanitized.fa"
2023-07-05 13:44:21.094962: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 0.8526 seconds and 51.9 Mi memory
2023-07-05 13:44:21.097368: Running the command: "cactus_analyseAssembly HG02559.1.sanitized.fa"
2023-07-05 13:44:21.101331: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/b114/5592/tmpo81rlywp/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p'" in 1.6802 seconds and 153.9 Mi memory
2023-07-05 13:44:21.101431: Running the command: "cactus_analyseAssembly HG03579.2.sanitized.fa"
2023-07-05 13:44:21.107844: Running the command: "cactus_analyseAssembly HG02257.1.sanitized.fa"
2023-07-05 13:44:21.109983: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/efe6/0903/tmpjrbszpr9/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p'" in 1.6506 seconds and 154.0 Mi memory
2023-07-05 13:44:21.112660: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/015f/e4db/tmp17e85avl/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p'" in 1.6689 seconds and 153.9 Mi memory
2023-07-05 13:44:21.113198: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/c95f/2e54/tmp2ma72cck/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 1.6637 seconds and 153.9 Mi memory
2023-07-05 13:44:21.113407: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/377c/fa78/tmpu7jbijm_/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p'" in 1.6629 seconds and 154.0 Mi memory
2023-07-05 13:44:21.114103: Successfully ran: "cactus_analyseAssembly HG03579.2.sanitized.fa" in 0.8885 seconds and 58.3 Mi memory
2023-07-05 13:44:21.114999: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/01a9/698a/tmp4v5dbx1i/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p'" in 1.6554 seconds and 66.3 Mi memory
2023-07-05 13:44:21.116657: Running the command: "cactus_analyseAssembly HG03516.1.sanitized.fa"
2023-07-05 13:44:21.117587: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/c98e/eb82/tmpdmuq9zas/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p'" in 1.7294 seconds and 53.2 Mi memory
2023-07-05 13:44:21.119089: Running the command: "cactus_analyseAssembly HG02486.2.sanitized.fa"
2023-07-05 13:44:21.119755: Running the command: "cactus_analyseAssembly GRCh38.sanitized.fa"
2023-07-05 13:44:21.119809: Running the command: "cactus_analyseAssembly HG00733.2.sanitized.fa"
2023-07-05 13:44:21.121398: Running the command: "cactus_analyseAssembly HG01978.2.sanitized.fa"
2023-07-05 13:44:21.124139: Running the command: "cactus_analyseAssembly HG03540.1.sanitized.fa"
2023-07-05 13:44:21.131149: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0cc9/1a79/tmpg8ej77u3/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p'" in 1.7379 seconds and 154.0 Mi memory
2023-07-05 13:44:21.134017: Successfully ran: "cactus_analyseAssembly HG02572.2.sanitized.fa" in 0.8754 seconds and 51.9 Mi memory
2023-07-05 13:44:21.137377: Running the command: "cactus_analyseAssembly HG01258.2.sanitized.fa"
2023-07-05 13:44:21.141515: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0fdf/2977/tmp6x7iqfvq/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p'" in 1.7554 seconds and 153.9 Mi memory
2023-07-05 13:44:21.151899: Running the command: "cactus_analyseAssembly CHM13.sanitized.fa"
2023-07-05 13:44:21.166407: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 0.88 seconds and 58.3 Mi memory
2023-07-05 13:44:21.166910: Successfully ran: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa" in 0.9099 seconds and 19.5 Mi memory
2023-07-05 13:44:21.170273: Successfully ran: "cactus_analyseAssembly NA18906.1.sanitized.fa" in 0.8903 seconds and 51.9 Mi memory
2023-07-05 13:44:21.192177: Successfully ran: "cactus_analyseAssembly HG01243.1.sanitized.fa" in 0.8848 seconds and 51.9 Mi memory
2023-07-05 13:44:21.198073: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 0.8808 seconds and 51.9 Mi memory
2023-07-05 13:44:21.199356: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 0.9069 seconds and 51.9 Mi memory
2023-07-05 13:44:21.207441: Successfully ran: "cactus_analyseAssembly HG02630.1.sanitized.fa" in 0.9058 seconds and 51.9 Mi memory
2023-07-05 13:44:21.208943: Successfully ran: "cactus_analyseAssembly HG02723.1.sanitized.fa" in 0.8892 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:44:21: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 12 Total-length: 127157955 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16208858 Median-sequence-length: 9188466 Max-sequence-length: 28127176 Min-sequence-length: 571522

2023-07-05 13:44:21.284507: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 0.9773 seconds and 153.9 Mi memory
2023-07-05 13:44:21.304464: Successfully ran: "cactus_analyseAssembly HG02818.1.sanitized.fa" in 0.9735 seconds and 51.8 Mi memory
2023-07-05 13:44:21.319422: Successfully ran: "cactus_analyseAssembly NA20129.1.sanitized.fa" in 0.9441 seconds and 51.9 Mi memory
2023-07-05 13:44:21.321264: Successfully ran: "cactus_analyseAssembly HG02717.1.sanitized.fa" in 0.9762 seconds and 51.9 Mi memory
2023-07-05 13:44:21.323770: Successfully ran: "cactus_analyseAssembly HG02486.1.sanitized.fa" in 1.0004 seconds and 62.7 Mi memory
2023-07-05 13:44:21.323778: Successfully ran: "cactus_analyseAssembly HG03486.1.sanitized.fa" in 0.9619 seconds and 51.9 Mi memory
2023-07-05 13:44:21.328866: Successfully ran: "cactus_analyseAssembly HG01361.1.sanitized.fa" in 0.9588 seconds and 55.9 Mi memory
2023-07-05 13:44:21.336706: Successfully ran: "cactus_analyseAssembly HG00438.1.sanitized.fa" in 0.9618 seconds and 51.9 Mi memory
2023-07-05 13:44:21.346247: Successfully ran: "cactus_analyseAssembly HG01123.2.sanitized.fa" in 1.0192 seconds and 153.9 Mi memory
2023-07-05 13:44:21.361568: Successfully ran: "cactus_analyseAssembly HG00733.1.sanitized.fa" in 0.9645 seconds and 51.9 Mi memory
2023-07-05 13:44:21.365820: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 0.9756 seconds and 51.9 Mi memory
2023-07-05 13:44:21.370719: Successfully ran: "cactus_analyseAssembly HG00735.1.sanitized.fa" in 1.0476 seconds and 64.7 Mi memory
2023-07-05 13:44:21.370968: Successfully ran: "cactus_analyseAssembly HG03579.1.sanitized.fa" in 0.9865 seconds and 51.9 Mi memory
2023-07-05 13:44:21.373486: Successfully ran: "cactus_analyseAssembly HG02055.2.sanitized.fa" in 0.9755 seconds and 51.9 Mi memory
2023-07-05 13:44:21.377225: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 0.9983 seconds and 51.9 Mi memory
2023-07-05 13:44:21.390425: Successfully ran: "cactus_analyseAssembly HG02886.2.sanitized.fa" in 0.9627 seconds and 51.8 Mi memory
2023-07-05 13:44:21.393654: Successfully ran: "cactus_analyseAssembly HG02622.1.sanitized.fa" in 0.9852 seconds and 51.9 Mi memory
2023-07-05 13:44:21.395476: Successfully ran: "cactus_analyseAssembly HG02080.1.sanitized.fa" in 0.9899 seconds and 64.2 Mi memory
2023-07-05 13:44:21.407092: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 1.019 seconds and 153.9 Mi memory
2023-07-05 13:44:21.420425: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 1.0193 seconds and 153.9 Mi memory
2023-07-05 13:44:21.421311: Successfully ran: "cactus_analyseAssembly HG01175.2.sanitized.fa" in 1.0408 seconds and 153.9 Mi memory
2023-07-05 13:44:21.423608: Successfully ran: "cactus_analyseAssembly HG02486.2.sanitized.fa" in 0.9938 seconds and 153.9 Mi memory
2023-07-05 13:44:21.430755: Successfully ran: "cactus_analyseAssembly HG01071.1.sanitized.fa" in 1.0052 seconds and 153.9 Mi memory
2023-07-05 13:44:21.433348: Successfully ran: "cactus_analyseAssembly HG02717.2.sanitized.fa" in 0.9877 seconds and 51.9 Mi memory
2023-07-05 13:44:21.453858: Successfully ran: "cactus_analyseAssembly HG01928.2.sanitized.fa" in 1.0093 seconds and 67.1 Mi memory
2023-07-05 13:44:21.460528: Successfully ran: "cactus_analyseAssembly HG03540.2.sanitized.fa" in 1.003 seconds and 57.3 Mi memory
2023-07-05 13:44:21.472209: Successfully ran: "cactus_analyseAssembly HG02257.2.sanitized.fa" in 1.0108 seconds and 153.9 Mi memory
2023-07-05 13:44:21.476862: Successfully ran: "cactus_analyseAssembly HG02622.2.sanitized.fa" in 1.0148 seconds and 153.9 Mi memory
2023-07-05 13:44:21.509192: Successfully ran: "cactus_analyseAssembly HG01243.2.sanitized.fa" in 1.062 seconds and 153.9 Mi memory
2023-07-05 13:44:21.517741: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 1.0198 seconds and 153.9 Mi memory
2023-07-05 13:44:21.523907: Successfully ran: "cactus_analyseAssembly HG01978.1.sanitized.fa" in 1.0886 seconds and 153.9 Mi memory
2023-07-05 13:44:21.525577: Successfully ran: "cactus_analyseAssembly HG02559.2.sanitized.fa" in 1.0419 seconds and 153.9 Mi memory
2023-07-05 13:44:21.534785: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 1.0417 seconds and 153.9 Mi memory
2023-07-05 13:44:21.565818: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 1.0409 seconds and 73.5 Mi memory
2023-07-05 13:44:21.660060: Successfully ran: "cactus_analyseAssembly HG01891.1.sanitized.fa" in 1.0894 seconds and 153.9 Mi memory
2023-07-05 13:44:21.679501: Successfully ran: "cactus_analyseAssembly CHM13.sanitized.fa" in 1.102 seconds and 153.9 Mi memory
2023-07-05 13:44:21.758936: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 1.3818 seconds and 51.9 Mi memory
2023-07-05 13:44:21.836434: Successfully ran: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa" in 0.939 seconds and 7.0 Mi memory
2023-07-05 13:44:21.876111: Successfully ran: "cactus_analyseAssembly HG03486.1.sanitized.fa" in 0.9058 seconds and 51.9 Mi memory
2023-07-05 13:44:21.905650: Successfully ran: "cactus_analyseAssembly HG02080.2.sanitized.fa" in 0.9149 seconds and 52.6 Mi memory
2023-07-05 13:44:21.922744: Successfully ran: "cactus_analyseAssembly HG01928.1.sanitized.fa" in 0.939 seconds and 60.1 Mi memory
2023-07-05 13:44:21.924310: Successfully ran: "cactus_analyseAssembly NA21309.1.sanitized.fa" in 0.916 seconds and 51.9 Mi memory
2023-07-05 13:44:21.926866: Successfully ran: "cactus_analyseAssembly HG03579.1.sanitized.fa" in 0.8837 seconds and 26.3 Mi memory
2023-07-05 13:44:21.936302: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 0.9235 seconds and 51.9 Mi memory
2023-07-05 13:44:21.946817: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 0.9206 seconds and 51.9 Mi memory
2023-07-05 13:44:21.948235: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 0.941 seconds and 60.1 Mi memory
2023-07-05 13:44:21.949160: Successfully ran: "cactus_analyseAssembly HG03540.2.sanitized.fa" in 0.9259 seconds and 51.9 Mi memory
2023-07-05 13:44:21.950840: Successfully ran: "cactus_analyseAssembly HG01243.2.sanitized.fa" in 0.9348 seconds and 51.9 Mi memory
2023-07-05 13:44:21.952205: Successfully ran: "cactus_analyseAssembly HG02055.2.sanitized.fa" in 0.9461 seconds and 70.9 Mi memory
2023-07-05 13:44:21.952327: Successfully ran: "cactus_analyseAssembly HG00735.2.sanitized.fa" in 0.9343 seconds and 59.8 Mi memory
2023-07-05 13:44:21.960396: Successfully ran: "cactus_analyseAssembly HG02818.1.sanitized.fa" in 0.896 seconds and 51.9 Mi memory
2023-07-05 13:44:21.963164: Successfully ran: "cactus_analyseAssembly HG01928.2.sanitized.fa" in 0.9384 seconds and 69.9 Mi memory
2023-07-05 13:44:21.967368: Successfully ran: "cactus_analyseAssembly NA18906.1.sanitized.fa" in 0.9347 seconds and 58.0 Mi memory
2023-07-05 13:44:21.970113: Successfully ran: "cactus_analyseAssembly HG02486.1.sanitized.fa" in 0.9342 seconds and 51.9 Mi memory
2023-07-05 13:44:21.974884: Successfully ran: "cactus_analyseAssembly HG02145.1.sanitized.fa" in 0.9224 seconds and 51.8 Mi memory
2023-07-05 13:44:21.977165: Successfully ran: "cactus_analyseAssembly HG02723.1.sanitized.fa" in 0.9451 seconds and 70.7 Mi memory
2023-07-05 13:44:21.982975: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 0.9278 seconds and 51.9 Mi memory
2023-07-05 13:44:21.984551: Successfully ran: "cactus_analyseAssembly HG01952.1.sanitized.fa" in 0.929 seconds and 51.9 Mi memory
2023-07-05 13:44:21.986184: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 0.9473 seconds and 51.9 Mi memory
2023-07-05 13:44:21.988894: Successfully ran: "cactus_analyseAssembly HG01071.2.sanitized.fa" in 0.9442 seconds and 60.1 Mi memory
2023-07-05 13:44:21.989240: Successfully ran: "cactus_analyseAssembly HG02148.1.sanitized.fa" in 0.9345 seconds and 53.9 Mi memory
2023-07-05 13:44:21.989710: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 0.9209 seconds and 51.9 Mi memory
2023-07-05 13:44:21.990736: Successfully ran: "cactus_analyseAssembly HG02622.1.sanitized.fa" in 0.9338 seconds and 51.9 Mi memory
2023-07-05 13:44:21.992675: Successfully ran: "cactus_analyseAssembly HG01952.2.sanitized.fa" in 0.9534 seconds and 51.9 Mi memory
2023-07-05 13:44:21.993726: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 0.9393 seconds and 59.8 Mi memory
2023-07-05 13:44:21.994876: Successfully ran: "cactus_analyseAssembly HG01123.2.sanitized.fa" in 0.9405 seconds and 70.4 Mi memory
2023-07-05 13:44:21.995868: Successfully ran: "cactus_analyseAssembly HG01123.1.sanitized.fa" in 0.9277 seconds and 51.9 Mi memory
2023-07-05 13:44:21.999181: Successfully ran: "cactus_analyseAssembly HG02630.1.sanitized.fa" in 0.9467 seconds and 51.8 Mi memory
2023-07-05 13:44:21.999345: Successfully ran: "cactus_analyseAssembly HG02257.2.sanitized.fa" in 0.985 seconds and 153.9 Mi memory
2023-07-05 13:44:21.999819: Successfully ran: "cactus_analyseAssembly HG01243.1.sanitized.fa" in 0.933 seconds and 59.8 Mi memory
2023-07-05 13:44:22.001587: Successfully ran: "cactus_analyseAssembly HG02717.1.sanitized.fa" in 0.9335 seconds and 51.9 Mi memory
2023-07-05 13:44:22.001908: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 0.9377 seconds and 69.6 Mi memory
2023-07-05 13:44:22.002244: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 0.9249 seconds and 51.9 Mi memory
2023-07-05 13:44:22.002845: Successfully ran: "cactus_analyseAssembly HG03098.2.sanitized.fa" in 0.9406 seconds and 53.9 Mi memory
2023-07-05 13:44:22.003709: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 0.9318 seconds and 51.9 Mi memory
2023-07-05 13:44:22.009125: Successfully ran: "cactus_analyseAssembly HG01258.1.sanitized.fa" in 0.9345 seconds and 51.9 Mi memory
2023-07-05 13:44:22.011203: Successfully ran: "cactus_analyseAssembly HG03486.2.sanitized.fa" in 0.9239 seconds and 51.9 Mi memory
2023-07-05 13:44:22.012297: Successfully ran: "cactus_analyseAssembly HG00735.1.sanitized.fa" in 0.9328 seconds and 69.6 Mi memory
2023-07-05 13:44:22.013329: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 0.9481 seconds and 54.4 Mi memory
2023-07-05 13:44:22.014822: Successfully ran: "cactus_analyseAssembly HG03579.2.sanitized.fa" in 0.9124 seconds and 51.9 Mi memory
2023-07-05 13:44:22.014844: Successfully ran: "cactus_analyseAssembly HG00438.2.sanitized.fa" in 0.937 seconds and 60.1 Mi memory
2023-07-05 13:44:22.015604: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 0.93 seconds and 51.9 Mi memory
2023-07-05 13:44:22.019818: Successfully ran: "cactus_analyseAssembly HG01071.1.sanitized.fa" in 0.9404 seconds and 51.9 Mi memory
2023-07-05 13:44:22.026197: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 0.9522 seconds and 51.9 Mi memory
2023-07-05 13:44:22.028434: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 0.9457 seconds and 64.5 Mi memory
2023-07-05 13:44:22.029446: Successfully ran: "cactus_analyseAssembly HG02559.1.sanitized.fa" in 0.9312 seconds and 74.5 Mi memory
2023-07-05 13:44:22.031479: Successfully ran: "cactus_analyseAssembly HG00438.1.sanitized.fa" in 0.9368 seconds and 59.8 Mi memory
2023-07-05 13:44:22.034801: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/c1cc/cb43/tmpg45sffrh/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p'" in 2.419 seconds and 69.4 Mi memory
2023-07-05 13:44:22.044298: Successfully ran: "cactus_analyseAssembly HG02622.2.sanitized.fa" in 0.9688 seconds and 153.9 Mi memory
2023-07-05 13:44:22.048573: Successfully ran: "cactus_analyseAssembly HG03492.2.sanitized.fa" in 0.9524 seconds and 51.9 Mi memory
2023-07-05 13:44:22.051902: Running the command: "cactus_analyseAssembly HG02148.1.sanitized.fa"
2023-07-05 13:44:22.058091: Successfully ran: "cactus_analyseAssembly HG03540.1.sanitized.fa" in 0.9331 seconds and 53.1 Mi memory
2023-07-05 13:44:22.078554: Successfully ran: "cactus_analyseAssembly HG01978.2.sanitized.fa" in 0.9562 seconds and 66.3 Mi memory
2023-07-05 13:44:22.094357: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/6a3e/b67d/tmpnzfysztu/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p'" in 2.4723 seconds and 154.0 Mi memory
2023-07-05 13:44:22.097408: Successfully ran: "cactus_analyseAssembly HG02257.1.sanitized.fa" in 0.9884 seconds and 153.9 Mi memory
2023-07-05 13:44:22.099365: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 0.9785 seconds and 153.9 Mi memory
2023-07-05 13:44:22.103528: Running the command: "cactus_analyseAssembly HG01123.1.sanitized.fa"
2023-07-05 13:44:22.104414: Successfully ran: "cactus_analyseAssembly HG02486.2.sanitized.fa" in 0.9842 seconds and 153.9 Mi memory
2023-07-05 13:44:22.113164: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 0.9923 seconds and 153.9 Mi memory
2023-07-05 13:44:22.113202: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 0.9954 seconds and 153.9 Mi memory
2023-07-05 13:44:22.118001: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 0.9795 seconds and 153.9 Mi memory
2023-07-05 13:44:22.140640: Successfully ran: "cactus_analyseAssembly CHM13.sanitized.fa" in 0.9876 seconds and 153.9 Mi memory
2023-07-05 13:44:22.181118: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/770c/8fa3/tmp3pvv2k2k/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p'" in 2.561 seconds and 51.9 Mi memory
2023-07-05 13:44:22.190167: Running the command: "cactus_analyseAssembly HG02818.2.sanitized.fa"
2023-07-05 13:44:22.293244: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/1514/4c41/tmpgbm09c4m/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p'" in 2.6274 seconds and 75.6 Mi memory
2023-07-05 13:44:22.308343: Running the command: "cactus_analyseAssembly HG02148.2.sanitized.fa"
2023-07-05 13:44:22.358527: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/8bf1/5aa4/tmp_otx_6bc/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p'" in 2.7419 seconds and 74.8 Mi memory
2023-07-05 13:44:22.364061: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/64eb/af0c/tmpgoq_w1e2/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p'" in 2.6891 seconds and 51.9 Mi memory
2023-07-05 13:44:22.370127: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/97e8/b940/tmp9_29aa1e/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p'" in 2.8655 seconds and 65.0 Mi memory
2023-07-05 13:44:22.370299: Running the command: "cactus_analyseAssembly HG03486.2.sanitized.fa"
2023-07-05 13:44:22.377401: Running the command: "cactus_analyseAssembly HG02109.2.sanitized.fa"
2023-07-05 13:44:22.379290: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/444f/49ae/tmpwzl0o4ts/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 2.8356 seconds and 62.4 Mi memory
2023-07-05 13:44:22.382479: Running the command: "cactus_analyseAssembly HG00733.1.sanitized.fa"
2023-07-05 13:44:22.383856: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/32b3/8070/tmppqa6ksx7/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 2.7242 seconds and 72.0 Mi memory
2023-07-05 13:44:22.385802: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/ccd6/3b3f/tmp993oqc4a/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p'" in 2.7778 seconds and 68.1 Mi memory
2023-07-05 13:44:22.392212: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-05 13:44:22.396486: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
2023-07-05 13:44:22.398077: Running the command: "cactus_analyseAssembly HG00741.2.sanitized.fa"
2023-07-05 13:44:22.403162: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/9c41/e4a0/tmpfnf3m3_n/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p'" in 2.7161 seconds and 51.9 Mi memory
2023-07-05 13:44:22.414835: Running the command: "cactus_analyseAssembly NA20129.1.sanitized.fa"
2023-07-05 13:44:22.455711: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/72de/90b5/tmpunkg_339/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p'" in 2.7651 seconds and 71.0 Mi memory
2023-07-05 13:44:22.455840: Running the command: "cactus_analyseAssembly HG03540.1.sanitized.fa"
2023-07-05 13:44:22.457017: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/c1b7/0178/tmp_ekq9wpf/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p'" in 2.8011 seconds and 76.9 Mi memory
2023-07-05 13:44:22.558193: Running the command: "cactus_analyseAssembly HG00735.1.sanitized.fa"
2023-07-05 13:44:22.558310: Running the command: "cactus_analyseAssembly HG00438.2.sanitized.fa"
2023-07-05 13:44:22.558326: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/20b4/0a4b/tmppvxht7v5/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p'" in 2.8591 seconds and 154.0 Mi memory
2023-07-05 13:44:22.562696: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
2023-07-05 13:44:22.641452: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/422a/34a8/tmppkl7a20z/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p'" in 2.9274 seconds and 154.0 Mi memory
2023-07-05 13:44:22.651815: Running the command: "cactus_analyseAssembly HG01978.1.sanitized.fa"
2023-07-05 13:44:23.654337: Successfully ran: "cactus_analyseAssembly HG02148.1.sanitized.fa" in 1.6012 seconds and 69.4 Mi memory
2023-07-05 13:44:23.784762: Successfully ran: "cactus_analyseAssembly HG01123.1.sanitized.fa" in 1.6804 seconds and 153.9 Mi memory
2023-07-05 13:44:23.805300: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 1.6143 seconds and 51.9 Mi memory
2023-07-05 13:44:23.935386: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 1.6259 seconds and 75.6 Mi memory
2023-07-05 13:44:23.943194: Successfully ran: "cactus_analyseAssembly HG02723.1.sanitized.fa" in 1.5498 seconds and 62.4 Mi memory
2023-07-05 13:44:23.944865: Successfully ran: "cactus_analyseAssembly HG03486.2.sanitized.fa" in 1.5736 seconds and 74.8 Mi memory
2023-07-05 13:44:23.952503: Successfully ran: "cactus_analyseAssembly HG00733.1.sanitized.fa" in 1.5689 seconds and 65.0 Mi memory
2023-07-05 13:44:23.979815: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 1.6012 seconds and 51.9 Mi memory
2023-07-05 13:44:23.980683: Successfully ran: "cactus_analyseAssembly NA21309.1.sanitized.fa" in 1.5476 seconds and 51.9 Mi memory
2023-07-05 13:44:23.982361: Successfully ran: "cactus_analyseAssembly HG00741.2.sanitized.fa" in 1.5832 seconds and 68.1 Mi memory
2023-07-05 13:44:24.015948: Successfully ran: "cactus_analyseAssembly HG02080.2.sanitized.fa" in 1.6183 seconds and 72.0 Mi memory
2023-07-05 13:44:24.019105: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 1.5553 seconds and 51.9 Mi memory
2023-07-05 13:44:24.020320: Successfully ran: "cactus_analyseAssembly HG02055.1.sanitized.fa" in 1.5774 seconds and 74.5 Mi memory
2023-07-05 13:44:24.021132: Successfully ran: "cactus_analyseAssembly HG03492.2.sanitized.fa" in 1.5656 seconds and 57.5 Mi memory
2023-07-05 13:44:24.035480: Successfully ran: "cactus_analyseAssembly HG01891.1.sanitized.fa" in 1.5938 seconds and 76.9 Mi memory
2023-07-05 13:44:24.041410: Successfully ran: "cactus_analyseAssembly NA20129.1.sanitized.fa" in 1.6255 seconds and 51.9 Mi memory
2023-07-05 13:44:24.044817: Successfully ran: "cactus_analyseAssembly HG02109.1.sanitized.fa" in 1.5943 seconds and 64.2 Mi memory
2023-07-05 13:44:24.050330: Successfully ran: "cactus_analyseAssembly HG03486.1.sanitized.fa" in 1.578 seconds and 51.9 Mi memory
2023-07-05 13:44:24.055698: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 1.6188 seconds and 153.9 Mi memory
2023-07-05 13:44:24.056264: Successfully ran: "cactus_analyseAssembly HG02080.1.sanitized.fa" in 1.5879 seconds and 69.4 Mi memory
2023-07-05 13:44:24.062318: Successfully ran: "cactus_analyseAssembly NA21309.2.sanitized.fa" in 1.6144 seconds and 68.1 Mi memory
2023-07-05 13:44:24.070357: Successfully ran: "cactus_analyseAssembly HG01952.1.sanitized.fa" in 1.6284 seconds and 65.0 Mi memory
2023-07-05 13:44:24.070404: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 1.591 seconds and 70.2 Mi memory
2023-07-05 13:44:24.079140: Successfully ran: "cactus_analyseAssembly HG01358.1.sanitized.fa" in 1.6417 seconds and 76.6 Mi memory
2023-07-05 13:44:24.092099: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 1.6086 seconds and 153.9 Mi memory
2023-07-05 13:44:24.092380: Successfully ran: "cactus_analyseAssembly HG03540.1.sanitized.fa" in 1.6355 seconds and 51.9 Mi memory
2023-07-05 13:44:24.093462: Successfully ran: "cactus_analyseAssembly HG01243.2.sanitized.fa" in 1.6406 seconds and 51.9 Mi memory
2023-07-05 13:44:24.095140: Successfully ran: "cactus_analyseAssembly HG00741.1.sanitized.fa" in 1.6354 seconds and 68.6 Mi memory
2023-07-05 13:44:24.096618: Successfully ran: "cactus_analyseAssembly HG01123.2.sanitized.fa" in 1.6485 seconds and 74.8 Mi memory
2023-07-05 13:44:24.102403: Successfully ran: "cactus_analyseAssembly HG03579.2.sanitized.fa" in 1.6328 seconds and 76.9 Mi memory
2023-07-05 13:44:24.106618: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 1.6371 seconds and 70.9 Mi memory
2023-07-05 13:44:24.110385: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 1.6298 seconds and 51.9 Mi memory
2023-07-05 13:44:24.115268: Successfully ran: "cactus_analyseAssembly HG01243.1.sanitized.fa" in 1.6326 seconds and 51.9 Mi memory
2023-07-05 13:44:24.125292: Successfully ran: "cactus_analyseAssembly HG01071.2.sanitized.fa" in 1.6433 seconds and 69.6 Mi memory
2023-07-05 13:44:24.125538: Successfully ran: "cactus_analyseAssembly HG01358.2.sanitized.fa" in 1.6369 seconds and 65.0 Mi memory
2023-07-05 13:44:24.125684: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 1.6124 seconds and 51.9 Mi memory
2023-07-05 13:44:24.134413: Successfully ran: "cactus_analyseAssembly HG03540.2.sanitized.fa" in 1.6056 seconds and 51.9 Mi memory
2023-07-05 13:44:24.139692: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 1.6574 seconds and 153.9 Mi memory
2023-07-05 13:44:24.151815: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 1.6746 seconds and 72.2 Mi memory
2023-07-05 13:44:24.171114: Successfully ran: "cactus_analyseAssembly HG02055.2.sanitized.fa" in 1.6719 seconds and 58.3 Mi memory
2023-07-05 13:44:24.173590: Successfully ran: "cactus_analyseAssembly HG03579.1.sanitized.fa" in 1.6522 seconds and 51.9 Mi memory
2023-07-05 13:44:24.176789: Successfully ran: "cactus_analyseAssembly HG03098.1.sanitized.fa" in 1.6221 seconds and 51.9 Mi memory
2023-07-05 13:44:24.181003: Successfully ran: "cactus_analyseAssembly HG01978.2.sanitized.fa" in 1.6918 seconds and 153.9 Mi memory
2023-07-05 13:44:24.182225: Successfully ran: "cactus_analyseAssembly NA18906.2.sanitized.fa" in 1.6548 seconds and 153.9 Mi memory
2023-07-05 13:44:24.186929: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 1.6627 seconds and 76.9 Mi memory
2023-07-05 13:44:24.198158: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 1.6856 seconds and 153.9 Mi memory
2023-07-05 13:44:24.198328: Successfully ran: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa" in 1.74 seconds and 20.5 Mi memory
2023-07-05 13:44:24.199617: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 1.6727 seconds and 68.1 Mi memory
2023-07-05 13:44:24.200839: Successfully ran: "cactus_analyseAssembly HG02622.2.sanitized.fa" in 1.6713 seconds and 76.9 Mi memory
2023-07-05 13:44:24.211731: Successfully ran: "cactus_analyseAssembly HG02559.2.sanitized.fa" in 1.7023 seconds and 153.9 Mi memory
2023-07-05 13:44:24.212180: Successfully ran: "cactus_analyseAssembly HG02559.1.sanitized.fa" in 1.6969 seconds and 153.9 Mi memory
2023-07-05 13:44:24.213150: Successfully ran: "cactus_analyseAssembly HG02886.1.sanitized.fa" in 1.6642 seconds and 62.4 Mi memory
2023-07-05 13:44:24.229019: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 1.6841 seconds and 68.1 Mi memory
2023-07-05 13:44:24.229936: Successfully ran: "cactus_analyseAssembly NA18906.1.sanitized.fa" in 1.6943 seconds and 71.7 Mi memory
2023-07-05 13:44:24.236908: Successfully ran: "cactus_analyseAssembly HG02486.1.sanitized.fa" in 1.7123 seconds and 153.9 Mi memory
2023-07-05 13:44:24.240248: Successfully ran: "cactus_analyseAssembly HG02257.1.sanitized.fa" in 1.7014 seconds and 153.9 Mi memory
2023-07-05 13:44:24.255635: Successfully ran: "cactus_analyseAssembly HG00438.2.sanitized.fa" in 1.6962 seconds and 153.9 Mi memory
2023-07-05 13:44:24.264159: Successfully ran: "cactus_analyseAssembly HG01175.2.sanitized.fa" in 1.6759 seconds and 58.3 Mi memory
2023-07-05 13:44:24.265051: Successfully ran: "cactus_analyseAssembly HG02717.2.sanitized.fa" in 1.6827 seconds and 58.3 Mi memory
2023-07-05 13:44:24.275296: Successfully ran: "cactus_analyseAssembly HG01928.1.sanitized.fa" in 1.7102 seconds and 153.9 Mi memory
2023-07-05 13:44:24.281763: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 1.7061 seconds and 153.9 Mi memory
2023-07-05 13:44:24.288188: Successfully ran: "cactus_analyseAssembly HG02886.2.sanitized.fa" in 1.6799 seconds and 64.7 Mi memory
2023-07-05 13:44:24.290141: Successfully ran: "cactus_analyseAssembly HG03098.2.sanitized.fa" in 1.7263 seconds and 153.9 Mi memory
2023-07-05 13:44:24.295266: Successfully ran: "cactus_analyseAssembly HG01258.1.sanitized.fa" in 1.725 seconds and 153.9 Mi memory
2023-07-05 13:44:24.303819: Successfully ran: "cactus_analyseAssembly HG00735.1.sanitized.fa" in 1.7447 seconds and 153.9 Mi memory
2023-07-05 13:44:24.321165: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 1.7084 seconds and 153.9 Mi memory
2023-07-05 13:44:24.389758: Successfully ran: "cactus_analyseAssembly HG01978.1.sanitized.fa" in 1.737 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:44:25: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 4 Total-length: 132257779 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 113639411 Median-sequence-length: 12926724 Max-sequence-length: 113639411 Min-sequence-length: 324046

Got message from job at time 07-05-2023 13:44:25: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 10 Total-length: 133474716 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36021228 Median-sequence-length: 4888307 Max-sequence-length: 38200912 Min-sequence-length: 313751

Got message from job at time 07-05-2023 13:44:25: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 13 Total-length: 131584187 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 21382358 Median-sequence-length: 3727143 Max-sequence-length: 36361638 Min-sequence-length: 30345

Got message from job at time 07-05-2023 13:44:26: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 4 Total-length: 133563925 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 90073209 Median-sequence-length: 36989221 Max-sequence-length: 90073209 Min-sequence-length: 322669

Got message from job at time 07-05-2023 13:44:26: Assembly stats for HG02622.1: Input-sample: HG02622.1.sanitized.fa Total-sequences: 5 Total-length: 133460759 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40207990 Median-sequence-length: 27731406 Max-sequence-length: 59033878 Min-sequence-length: 2226680

Got message from job at time 07-05-2023 13:44:26: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 4 Total-length: 132546290 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 122693494 Median-sequence-length: 6464454 Max-sequence-length: 122693494 Min-sequence-length: 460080

Got message from job at time 07-05-2023 13:44:26: Assembly stats for HG03453.1: Input-sample: HG03453.1.sanitized.fa Total-sequences: 11 Total-length: 136058613 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30732843 Median-sequence-length: 5197867 Max-sequence-length: 57866458 Min-sequence-length: 18049

Got message from job at time 07-05-2023 13:44:26: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 16 Total-length: 134257562 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15270197 Median-sequence-length: 5535335 Max-sequence-length: 29521176 Min-sequence-length: 109995

Got message from job at time 07-05-2023 13:44:26: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 133324548 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 133324548 Median-sequence-length: 133324548 Max-sequence-length: 133324548 Min-sequence-length: 133324548

Got message from job at time 07-05-2023 13:44:26: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 11 Total-length: 132939978 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28262556 Median-sequence-length: 5204800 Max-sequence-length: 57836667 Min-sequence-length: 31656

Got message from job at time 07-05-2023 13:44:26: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 12 Total-length: 138278082 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24166191 Median-sequence-length: 6785753 Max-sequence-length: 52943138 Min-sequence-length: 838704

Got message from job at time 07-05-2023 13:44:26: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 9 Total-length: 133296585 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35419903 Median-sequence-length: 5194339 Max-sequence-length: 62671158 Min-sequence-length: 47307

Got message from job at time 07-05-2023 13:44:26: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 11 Total-length: 133590916 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34933294 Median-sequence-length: 8686686 Max-sequence-length: 36552045 Min-sequence-length: 319390

Got message from job at time 07-05-2023 13:44:26: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 8 Total-length: 133627088 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 75720837 Median-sequence-length: 6929817 Max-sequence-length: 75720837 Min-sequence-length: 1254994

Got message from job at time 07-05-2023 13:44:26: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 8 Total-length: 134698349 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34567400 Median-sequence-length: 19970756 Max-sequence-length: 35997651 Min-sequence-length: 1255662

Got message from job at time 07-05-2023 13:44:26: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 5 Total-length: 133587477 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 88750554 Median-sequence-length: 9070865 Max-sequence-length: 88750554 Min-sequence-length: 320448

Got message from job at time 07-05-2023 13:44:26: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 6 Total-length: 132919881 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 68762875 Median-sequence-length: 6923702 Max-sequence-length: 68762875 Min-sequence-length: 2564916

Got message from job at time 07-05-2023 13:44:27: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 7 Total-length: 34896689 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32415533 Median-sequence-length: 34588 Max-sequence-length: 32415533 Min-sequence-length: 19287

Got message from job at time 07-05-2023 13:44:27: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 7 Total-length: 34626257 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31780224 Median-sequence-length: 153788 Max-sequence-length: 31780224 Min-sequence-length: 36647

Got message from job at time 07-05-2023 13:44:27: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 13 Total-length: 39018918 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23899786 Median-sequence-length: 185426 Max-sequence-length: 23899786 Min-sequence-length: 30991

Got message from job at time 07-05-2023 13:44:27: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 10 Total-length: 34982748 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31943490 Median-sequence-length: 70738 Max-sequence-length: 31943490 Min-sequence-length: 27409

Got message from job at time 07-05-2023 13:44:27: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 15 Total-length: 37028638 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31824457 Median-sequence-length: 116004 Max-sequence-length: 31824457 Min-sequence-length: 16422

Got message from job at time 07-05-2023 13:44:27: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 10 Total-length: 35861938 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32278653 Median-sequence-length: 217529 Max-sequence-length: 32278653 Min-sequence-length: 35575

Got message from job at time 07-05-2023 13:44:27: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 11 Total-length: 37320272 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34420973 Median-sequence-length: 42850 Max-sequence-length: 34420973 Min-sequence-length: 26738

Got message from job at time 07-05-2023 13:44:28: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 8 Total-length: 36891992 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34192052 Median-sequence-length: 195461 Max-sequence-length: 34192052 Min-sequence-length: 35103

Got message from job at time 07-05-2023 13:44:28: Assembly stats for NA20129.1: Input-sample: NA20129.1.sanitized.fa Total-sequences: 4 Total-length: 34860823 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32364468 Median-sequence-length: 2323796 Max-sequence-length: 32364468 Min-sequence-length: 46168

Got message from job at time 07-05-2023 13:44:28: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 10 Total-length: 36077290 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32529091 Median-sequence-length: 266239 Max-sequence-length: 32529091 Min-sequence-length: 24744

Got message from job at time 07-05-2023 13:44:28: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 11 Total-length: 36469970 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32934298 Median-sequence-length: 164314 Max-sequence-length: 32934298 Min-sequence-length: 88995

Got message from job at time 07-05-2023 13:44:28: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 17 Total-length: 35422910 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 8617153 Median-sequence-length: 56061 Max-sequence-length: 13058654 Min-sequence-length: 19551

Got message from job at time 07-05-2023 13:44:28: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 8 Total-length: 36009622 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32801869 Median-sequence-length: 427958 Max-sequence-length: 32801869 Min-sequence-length: 36507

Got message from job at time 07-05-2023 13:44:28: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 11 Total-length: 36624074 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 9283058 Median-sequence-length: 226797 Max-sequence-length: 17073609 Min-sequence-length: 38105

Got message from job at time 07-05-2023 13:44:28: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 11 Total-length: 36396328 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24499578 Median-sequence-length: 243500 Max-sequence-length: 24499578 Min-sequence-length: 39808

Got message from job at time 07-05-2023 13:44:28: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 14 Total-length: 35089032 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32066798 Median-sequence-length: 40341 Max-sequence-length: 32066798 Min-sequence-length: 27005

Got message from job at time 07-05-2023 13:44:28: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 9 Total-length: 35362880 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23733076 Median-sequence-length: 548225 Max-sequence-length: 23733076 Min-sequence-length: 25517

2023-07-05 13:44:28.975898: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/02fc/4e44/tmpd1bz6lms/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p"
2023-07-05 13:44:28.986598: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/99f9/be28/tmpyc3ojj3z/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p"
2023-07-05 13:44:28.986819: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/2724/556e/tmp3adewjm0/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
Got message from job at time 07-05-2023 13:44:28: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 17 Total-length: 39337050 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26454045 Median-sequence-length: 41281 Max-sequence-length: 26454045 Min-sequence-length: 20609

2023-07-05 13:44:28.988041: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/fd57/87dc/tmp9ckcmw7d/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p"
2023-07-05 13:44:28.988422: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/06d8/c4df/tmprsoo_k5o/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p"
2023-07-05 13:44:28.990056: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/10bc/a94b/tmpogr7o2is/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p"
2023-07-05 13:44:28.991382: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/bf2f/6a66/tmpk0cgti93/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p"
2023-07-05 13:44:28.992098: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/75ae/84a9/tmp0ddmx2kn/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p"
2023-07-05 13:44:28.994566: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/fa55/f05a/tmp71_8rfpy/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p"
2023-07-05 13:44:28.997342: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9ef0/413b/tmpuw085bcw/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
2023-07-05 13:44:28.997370: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/04fc/4bfe/tmpui88jxz0/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-05 13:44:28.998085: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1655/d693/tmp8sejaw48/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p"
2023-07-05 13:44:29.000005: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/d502/4093/tmp3tao_wl9/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p"
2023-07-05 13:44:29.001327: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/422f/284b/tmprqj_btn6/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
2023-07-05 13:44:29.001466: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a000/b599/tmpbmmawpq6/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p"
2023-07-05 13:44:29.002649: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/326b/f1c4/tmpwgxoqssq/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p"
2023-07-05 13:44:29.004466: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/57e8/9112/tmpal50keyn/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p"
2023-07-05 13:44:29.006619: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/cc23/f853/tmpndhlbo44/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p"
2023-07-05 13:44:29.006670: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/101d/fd1d/tmp7qts4ynl/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p"
2023-07-05 13:44:29.006700: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9e17/32fa/tmpfd35ehtd/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
2023-07-05 13:44:29.006872: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/b431/7d50/tmpogidqp51/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p"
2023-07-05 13:44:29.007924: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1dfe/ea39/tmp0erl37bi/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p"
Got message from job at time 07-05-2023 13:44:29: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 24 Total-length: 39750565 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28644118 Median-sequence-length: 51945 Max-sequence-length: 28644118 Min-sequence-length: 23491

Got message from job at time 07-05-2023 13:44:29: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 12 Total-length: 35788649 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28126907 Median-sequence-length: 257894 Max-sequence-length: 28126907 Min-sequence-length: 47778

Got message from job at time 07-05-2023 13:44:29: Assembly stats for HG03540.1: Input-sample: HG03540.1.sanitized.fa Total-sequences: 13 Total-length: 37323299 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29790782 Median-sequence-length: 183631 Max-sequence-length: 29790782 Min-sequence-length: 40276

Got message from job at time 07-05-2023 13:44:29: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 13 Total-length: 37327008 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24562806 Median-sequence-length: 164391 Max-sequence-length: 24562806 Min-sequence-length: 33426

Got message from job at time 07-05-2023 13:44:29: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 7 Total-length: 39421783 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32188518 Median-sequence-length: 269910 Max-sequence-length: 32188518 Min-sequence-length: 118736

Got message from job at time 07-05-2023 13:44:29: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 14 Total-length: 36832748 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 9370473 Median-sequence-length: 312281 Max-sequence-length: 17072509 Min-sequence-length: 20971

2023-07-05 13:44:30.285449: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1655/d693/tmp8sejaw48/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p'" in 1.2861 seconds and 56.6 Mi memory
2023-07-05 13:44:30.292707: Running the command: "cactus_analyseAssembly NA20129.1.sanitized.fa"
2023-07-05 13:44:30.293974: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/06d8/c4df/tmprsoo_k5o/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p'" in 1.3043 seconds and 71.2 Mi memory
Got message from job at time 07-05-2023 13:44:30: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 7 Total-length: 38712244 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35841889 Median-sequence-length: 197969 Max-sequence-length: 35841889 Min-sequence-length: 156282

2023-07-05 13:44:30.301087: Running the command: "cactus_analyseAssembly HG02572.2.sanitized.fa"
2023-07-05 13:44:30.302864: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/10bc/a94b/tmpogr7o2is/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p'" in 1.3114 seconds and 51.9 Mi memory
2023-07-05 13:44:30.305017: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/fa55/f05a/tmp71_8rfpy/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p'" in 1.3092 seconds and 60.1 Mi memory
2023-07-05 13:44:30.308978: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/fd57/87dc/tmp9ckcmw7d/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p'" in 1.3199 seconds and 56.5 Mi memory
2023-07-05 13:44:30.310309: Running the command: "cactus_analyseAssembly HG00673.1.sanitized.fa"
2023-07-05 13:44:30.313020: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
2023-07-05 13:44:30.313399: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a000/b599/tmpbmmawpq6/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p'" in 1.3109 seconds and 75.4 Mi memory
2023-07-05 13:44:30.316695: Running the command: "cactus_analyseAssembly HG03579.1.sanitized.fa"
2023-07-05 13:44:30.317155: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/99f9/be28/tmpyc3ojj3z/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p'" in 1.3293 seconds and 57.6 Mi memory
2023-07-05 13:44:30.320576: Running the command: "cactus_analyseAssembly HG03516.1.sanitized.fa"
2023-07-05 13:44:30.324085: Running the command: "cactus_analyseAssembly HG01175.1.sanitized.fa"
2023-07-05 13:44:30.326464: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/101d/fd1d/tmp7qts4ynl/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p'" in 1.3186 seconds and 51.9 Mi memory
2023-07-05 13:44:30.332615: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/bf2f/6a66/tmpk0cgti93/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p'" in 1.3399 seconds and 56.5 Mi memory
2023-07-05 13:44:30.333478: Running the command: "cactus_analyseAssembly NA21309.1.sanitized.fa"
2023-07-05 13:44:30.337977: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/2724/556e/tmp3adewjm0/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 1.3499 seconds and 153.9 Mi memory
2023-07-05 13:44:30.388249: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/422f/284b/tmprqj_btn6/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p'" in 1.3858 seconds and 153.9 Mi memory
2023-07-05 13:44:30.388640: Running the command: "cactus_analyseAssembly HG00741.1.sanitized.fa"
2023-07-05 13:44:30.391500: Running the command: "cactus_analyseAssembly HG02717.2.sanitized.fa"
2023-07-05 13:44:30.395036: Running the command: "cactus_analyseAssembly HG00621.2.sanitized.fa"
Got message from job at time 07-05-2023 13:44:30: Assembly stats for HG00741.1: Input-sample: HG00741.1.sanitized.fa Total-sequences: 6 Total-length: 36494658 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33794583 Median-sequence-length: 260180 Max-sequence-length: 33794583 Min-sequence-length: 35085

Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-j4ijxkso v1 with job batch system ID: 2657 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:44:30: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 10 Total-length: 131441674 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18060175 Median-sequence-length: 14259059 Max-sequence-length: 25001031 Min-sequence-length: 1423510

Got message from job at time 07-05-2023 13:44:30: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 14 Total-length: 39709315 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35884607 Median-sequence-length: 79728 Max-sequence-length: 35884607 Min-sequence-length: 21435

Got message from job at time 07-05-2023 13:44:30: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 12 Total-length: 39286392 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24684566 Median-sequence-length: 287929 Max-sequence-length: 24684566 Min-sequence-length: 47375

Got message from job at time 07-05-2023 13:44:31: Assembly stats for NA20129.1: Input-sample: NA20129.1.sanitized.fa Total-sequences: 11 Total-length: 134892695 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 21821000 Median-sequence-length: 7109850 Max-sequence-length: 36373960 Min-sequence-length: 1912537

Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 10 Total-length: 132366585 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26547550 Median-sequence-length: 11634703 Max-sequence-length: 50300020 Min-sequence-length: 32217

Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 8 Total-length: 134907410 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25111371 Median-sequence-length: 17953703 Max-sequence-length: 49041173 Min-sequence-length: 2109396

Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 3 Total-length: 134192444 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 118425108 Median-sequence-length: 9540120 Max-sequence-length: 118425108 Min-sequence-length: 6227216

Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 1 Total-length: 134157053 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 134157053 Median-sequence-length: 134157053 Max-sequence-length: 134157053 Min-sequence-length: 134157053

Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 7 Total-length: 134703583 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37832793 Median-sequence-length: 15780233 Max-sequence-length: 48997837 Min-sequence-length: 61980

Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 4 Total-length: 136068631 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 74094385 Median-sequence-length: 33172481 Max-sequence-length: 74094385 Min-sequence-length: 10352284

2023-07-05 13:44:31.225289: Successfully ran: "cactus_analyseAssembly NA20129.1.sanitized.fa" in 0.9315 seconds and 56.5 Mi memory
Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 3 Total-length: 134309846 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 72324351 Median-sequence-length: 41001116 Max-sequence-length: 72324351 Min-sequence-length: 20984379

2023-07-05 13:44:31.247037: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 0.9359 seconds and 51.9 Mi memory
2023-07-05 13:44:31.247169: Successfully ran: "cactus_analyseAssembly HG02572.2.sanitized.fa" in 0.9454 seconds and 71.2 Mi memory
2023-07-05 13:44:31.254391: Successfully ran: "cactus_analyseAssembly HG03579.1.sanitized.fa" in 0.9368 seconds and 56.5 Mi memory
2023-07-05 13:44:31.256262: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 0.9314 seconds and 57.5 Mi memory
Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 5 Total-length: 134235421 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 72321619 Median-sequence-length: 18172433 Max-sequence-length: 72321619 Min-sequence-length: 19703

2023-07-05 13:44:31.261317: Successfully ran: "cactus_analyseAssembly HG03098.2.sanitized.fa" in 0.9474 seconds and 60.1 Mi memory
2023-07-05 13:44:31.265143: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 0.9437 seconds and 75.3 Mi memory
2023-07-05 13:44:31.268268: Successfully ran: "cactus_analyseAssembly NA21309.1.sanitized.fa" in 0.9339 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 14 Total-length: 37992022 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31578008 Median-sequence-length: 102252 Max-sequence-length: 31578008 Min-sequence-length: 25411

2023-07-05 13:44:31.290854: Successfully ran: "cactus_analyseAssembly HG01106.1.sanitized.fa" in 0.9493 seconds and 56.5 Mi memory
2023-07-05 13:44:31.291935: Successfully ran: "cactus_analyseAssembly HG01123.1.sanitized.fa" in 0.9454 seconds and 60.1 Mi memory
2023-07-05 13:44:31.311542: Successfully ran: "cactus_analyseAssembly HG02886.1.sanitized.fa" in 0.9615 seconds and 56.5 Mi memory
2023-07-05 13:44:31.320124: Successfully ran: "cactus_analyseAssembly HG03486.2.sanitized.fa" in 0.9512 seconds and 55.7 Mi memory
2023-07-05 13:44:31.342964: Successfully ran: "cactus_analyseAssembly HG02559.2.sanitized.fa" in 0.979 seconds and 153.9 Mi memory
2023-07-05 13:44:31.346458: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 1.0004 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 12 Total-length: 37327883 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32841034 Median-sequence-length: 56857 Max-sequence-length: 32841034 Min-sequence-length: 24059

2023-07-05 13:44:31.368485: Successfully ran: "cactus_analyseAssembly CHM13.sanitized.fa" in 1.0155 seconds and 153.9 Mi memory
2023-07-05 13:44:31.368852: Successfully ran: "cactus_analyseAssembly HG02717.1.sanitized.fa" in 0.9936 seconds and 153.9 Mi memory
2023-07-05 13:44:31.371054: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 0.9929 seconds and 153.9 Mi memory
2023-07-05 13:44:31.373185: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 0.9773 seconds and 153.9 Mi memory
2023-07-05 13:44:31.383085: Successfully ran: "cactus_analyseAssembly HG01891.2.sanitized.fa" in 1.0078 seconds and 153.9 Mi memory
2023-07-05 13:44:31.384951: Successfully ran: "cactus_analyseAssembly HG02717.2.sanitized.fa" in 0.9927 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 10 Total-length: 38038432 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26156565 Median-sequence-length: 548928 Max-sequence-length: 26156565 Min-sequence-length: 42233

2023-07-05 13:44:31.395970: Successfully ran: "cactus_analyseAssembly HG01258.1.sanitized.fa" in 0.9913 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG00741.1: Input-sample: HG00741.1.sanitized.fa Total-sequences: 4 Total-length: 134175557 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51488948 Median-sequence-length: 51488948 Max-sequence-length: 61905306 Min-sequence-length: 392702

2023-07-05 13:44:31.412090: Successfully ran: "cactus_analyseAssembly HG00741.1.sanitized.fa" in 1.0226 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 15 Total-length: 131311546 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 36 N50: 17922615 Median-sequence-length: 4975258 Max-sequence-length: 23927588 Min-sequence-length: 38474

Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 11 Total-length: 134292726 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26549207 Median-sequence-length: 8145212 Max-sequence-length: 44231249 Min-sequence-length: 27837

Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG02622.1: Input-sample: HG02622.1.sanitized.fa Total-sequences: 7 Total-length: 39162615 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31383644 Median-sequence-length: 166153 Max-sequence-length: 31383644 Min-sequence-length: 57063

Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 13 Total-length: 39381340 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28445560 Median-sequence-length: 192158 Max-sequence-length: 28445560 Min-sequence-length: 24586

Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 5 Total-length: 135859854 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35305823 Median-sequence-length: 29376997 Max-sequence-length: 44565678 Min-sequence-length: 36390

Got message from job at time 07-05-2023 13:44:31: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 3 Total-length: 134438790 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40916098 Median-sequence-length: 40916098 Max-sequence-length: 64865647 Min-sequence-length: 28657045

Got message from job at time 07-05-2023 13:44:31: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 6 Total-length: 38216557 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35161309 Median-sequence-length: 258655 Max-sequence-length: 35161309 Min-sequence-length: 156635

Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 15 Total-length: 39296106 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32897300 Median-sequence-length: 40422 Max-sequence-length: 32897300 Min-sequence-length: 27680

Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 6 Total-length: 136680238 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40911136 Median-sequence-length: 37903735 Max-sequence-length: 55207144 Min-sequence-length: 79446

Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 10 Total-length: 134635341 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34680174 Median-sequence-length: 6214876 Max-sequence-length: 44626919 Min-sequence-length: 23298

Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 3 Total-length: 135023660 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 114505151 Median-sequence-length: 20488950 Max-sequence-length: 114505151 Min-sequence-length: 29559

Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 31 Total-length: 40022324 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27024436 Median-sequence-length: 42019 Max-sequence-length: 27024436 Min-sequence-length: 18302

Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG03453.1: Input-sample: HG03453.1.sanitized.fa Total-sequences: 7 Total-length: 137155447 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30830562 Median-sequence-length: 24009368 Max-sequence-length: 44690276 Min-sequence-length: 1493653

Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 4 Total-length: 135033447 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33079049 Median-sequence-length: 33079049 Max-sequence-length: 52599478 Min-sequence-length: 20565530

Got message from job at time 07-05-2023 13:44:31: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 7 Total-length: 135129031 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22791538 Median-sequence-length: 17453695 Max-sequence-length: 53697587 Min-sequence-length: 5885612

Got message from job at time 07-05-2023 13:44:32: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 17 Total-length: 42268356 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15557268 Median-sequence-length: 26818 Max-sequence-length: 17074762 Min-sequence-length: 19899

Got message from job at time 07-05-2023 13:44:32: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 5 Total-length: 135223949 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 73247524 Median-sequence-length: 20989917 Max-sequence-length: 73247524 Min-sequence-length: 20997

Got message from job at time 07-05-2023 13:44:32: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 1 Total-length: 134247767 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 134247767 Median-sequence-length: 134247767 Max-sequence-length: 134247767 Min-sequence-length: 134247767

Got message from job at time 07-05-2023 13:44:32: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 5 Total-length: 38594977 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32681392 Median-sequence-length: 2315405 Max-sequence-length: 32681392 Min-sequence-length: 183704

Got message from job at time 07-05-2023 13:44:32: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 7 Total-length: 134963914 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 49728438 Median-sequence-length: 3222526 Max-sequence-length: 63683926 Min-sequence-length: 25182

Got message from job at time 07-05-2023 13:44:32: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 6 Total-length: 135231808 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40936274 Median-sequence-length: 24319112 Max-sequence-length: 65546496 Min-sequence-length: 40283

Got message from job at time 07-05-2023 13:44:32: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 12 Total-length: 37423278 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31953122 Median-sequence-length: 221216 Max-sequence-length: 31953122 Min-sequence-length: 19724

Got message from job at time 07-05-2023 13:44:32: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 12 Total-length: 40655305 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32796054 Median-sequence-length: 177616 Max-sequence-length: 32796054 Min-sequence-length: 34314

Got message from job at time 07-05-2023 13:44:32: Assembly stats for HG01071.1: Input-sample: HG01071.1.sanitized.fa Total-sequences: 12 Total-length: 40384673 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37046686 Median-sequence-length: 159643 Max-sequence-length: 37046686 Min-sequence-length: 27888

Got message from job at time 07-05-2023 13:44:32: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 9 Total-length: 41023497 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37958998 Median-sequence-length: 190890 Max-sequence-length: 37958998 Min-sequence-length: 41306

Got message from job at time 07-05-2023 13:44:32: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 15 Total-length: 38776110 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24114786 Median-sequence-length: 40439 Max-sequence-length: 24114786 Min-sequence-length: 14524

Got message from job at time 07-05-2023 13:44:32: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 28 Total-length: 40631861 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 8566069 Median-sequence-length: 50913 Max-sequence-length: 12648642 Min-sequence-length: 23132

Got message from job at time 07-05-2023 13:44:32: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 45090682 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 45090682 Median-sequence-length: 45090682 Max-sequence-length: 45090682 Min-sequence-length: 45090682

Got message from job at time 07-05-2023 13:44:33: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 6889 Total-length: 47674436 Proportion-repeat-masked: 0.181888 ProportionNs: 0.181888 Total-Ns: 8671409 N50: 91155 Median-sequence-length: 83 Max-sequence-length: 5271427 Min-sequence-length: 1

Got message from job at time 07-05-2023 13:44:33: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 18 Total-length: 39636812 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36611060 Median-sequence-length: 40557 Max-sequence-length: 36611060 Min-sequence-length: 20225

Got message from job at time 07-05-2023 13:44:33: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 10 Total-length: 124864349 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 75489199 Median-sequence-length: 2318954 Max-sequence-length: 75489199 Min-sequence-length: 52560

Got message from job at time 07-05-2023 13:44:33: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 16 Total-length: 40968542 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 8509129 Median-sequence-length: 264215 Max-sequence-length: 16082020 Min-sequence-length: 46499

Got message from job at time 07-05-2023 13:44:33: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 30 Total-length: 41756339 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30489683 Median-sequence-length: 47340 Max-sequence-length: 30489683 Min-sequence-length: 22577

Got message from job at time 07-05-2023 13:44:33: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 46709983 Proportion-repeat-masked: 0.185644 ProportionNs: 0.185644 Total-Ns: 8671409 N50: 46709983 Median-sequence-length: 46709983 Max-sequence-length: 46709983 Min-sequence-length: 46709983

Got message from job at time 07-05-2023 13:44:33: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 3 Total-length: 133478207 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 89391259 Median-sequence-length: 43152682 Max-sequence-length: 89391259 Min-sequence-length: 934266

Got message from job at time 07-05-2023 13:44:33: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 9 Total-length: 127108900 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 81112077 Median-sequence-length: 596346 Max-sequence-length: 81112077 Min-sequence-length: 32101

Got message from job at time 07-05-2023 13:44:33: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 12 Total-length: 133726828 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28183595 Median-sequence-length: 2179028 Max-sequence-length: 65435977 Min-sequence-length: 150747

Got message from job at time 07-05-2023 13:44:33: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 13 Total-length: 45936023 Proportion-repeat-masked: 0.000001 ProportionNs: 0.000001 Total-Ns: 31 N50: 14063401 Median-sequence-length: 209674 Max-sequence-length: 21979201 Min-sequence-length: 23646

Got message from job at time 07-05-2023 13:44:33: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 4 Total-length: 134425471 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 90137601 Median-sequence-length: 32178839 Max-sequence-length: 90137601 Min-sequence-length: 4912928

Got message from job at time 07-05-2023 13:44:34: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 7 Total-length: 133310962 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43045556 Median-sequence-length: 3557583 Max-sequence-length: 45986718 Min-sequence-length: 150756

Got message from job at time 07-05-2023 13:44:34: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 5 Total-length: 128473811 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 77860424 Median-sequence-length: 3450635 Max-sequence-length: 77860424 Min-sequence-length: 390959

Got message from job at time 07-05-2023 13:44:34: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 7 Total-length: 138584519 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44109550 Median-sequence-length: 5922090 Max-sequence-length: 50250105 Min-sequence-length: 1005034

Got message from job at time 07-05-2023 13:44:34: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 6 Total-length: 136038913 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28247043 Median-sequence-length: 20632884 Max-sequence-length: 65596139 Min-sequence-length: 376261

Got message from job at time 07-05-2023 13:44:34: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 6 Total-length: 135562807 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 102501969 Median-sequence-length: 2538300 Max-sequence-length: 102501969 Min-sequence-length: 66763

Got message from job at time 07-05-2023 13:44:34: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 7 Total-length: 136645128 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42254222 Median-sequence-length: 17501371 Max-sequence-length: 50265553 Min-sequence-length: 150756

Got message from job at time 07-05-2023 13:44:34: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 9 Total-length: 117774325 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29125550 Median-sequence-length: 1737624 Max-sequence-length: 45697985 Min-sequence-length: 49748

Got message from job at time 07-05-2023 13:44:34: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 7 Total-length: 135342164 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35945187 Median-sequence-length: 7195357 Max-sequence-length: 61255800 Min-sequence-length: 33691

Got message from job at time 07-05-2023 13:44:34: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 6 Total-length: 129584101 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32630899 Median-sequence-length: 30088265 Max-sequence-length: 40234565 Min-sequence-length: 4818679

Got message from job at time 07-05-2023 13:44:34: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 9 Total-length: 136041382 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29888197 Median-sequence-length: 9195442 Max-sequence-length: 43340083 Min-sequence-length: 34719

Got message from job at time 07-05-2023 13:44:34: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 6 Total-length: 135386188 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 89380104 Median-sequence-length: 15125079 Max-sequence-length: 89380104 Min-sequence-length: 1257258

Got message from job at time 07-05-2023 13:44:34: Assembly stats for HG00741.1: Input-sample: HG00741.1.sanitized.fa Total-sequences: 12 Total-length: 119999959 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26719050 Median-sequence-length: 3057549 Max-sequence-length: 42348531 Min-sequence-length: 82204

Got message from job at time 07-05-2023 13:44:34: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 4 Total-length: 112772288 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40949767 Median-sequence-length: 40949767 Max-sequence-length: 46392069 Min-sequence-length: 938429

Got message from job at time 07-05-2023 13:44:34: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 8 Total-length: 134247510 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30069648 Median-sequence-length: 13324616 Max-sequence-length: 44942533 Min-sequence-length: 1014529

Got message from job at time 07-05-2023 13:44:34: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 7 Total-length: 142777213 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 84596780 Median-sequence-length: 15121833 Max-sequence-length: 84596780 Min-sequence-length: 45789

Got message from job at time 07-05-2023 13:44:34: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 9 Total-length: 141183463 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 73720558 Median-sequence-length: 653664 Max-sequence-length: 73720558 Min-sequence-length: 182086

Got message from job at time 07-05-2023 13:44:34: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 13 Total-length: 132157782 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12974257 Median-sequence-length: 9192406 Max-sequence-length: 28733780 Min-sequence-length: 1016505

Got message from job at time 07-05-2023 13:44:34: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 13 Total-length: 138537152 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34325530 Median-sequence-length: 1607262 Max-sequence-length: 45946058 Min-sequence-length: 51809

Got message from job at time 07-05-2023 13:44:34: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 1 Total-length: 138786403 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 138786403 Median-sequence-length: 138786403 Max-sequence-length: 138786403 Min-sequence-length: 138786403

Got message from job at time 07-05-2023 13:44:34: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 4 Total-length: 131113782 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 83809600 Median-sequence-length: 42481917 Max-sequence-length: 83809600 Min-sequence-length: 857592

2023-07-05 13:44:36.514401: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/d3ac/b4fa/tmp2p0qx8pb/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p"
2023-07-05 13:44:36.518870: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/f58a/d646/tmpjsarpvb5/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p"
2023-07-05 13:44:36.530389: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/d4ff/249c/tmph0a4um5i/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p"
2023-07-05 13:44:36.539905: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/ac47/55a2/tmp7qn2769z/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p"
2023-07-05 13:44:36.539911: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/2f0e/178c/tmp6tfe0yh8/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p"
2023-07-05 13:44:36.552250: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/46ce/908d/tmp88yg96v4/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-05 13:44:36.553237: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/9af2/4153/tmpye83eg1a/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-didjtbtn v1 with job batch system ID: 2658 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 13:44:36.567370: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/33ad/4216/tmpwm_0r6nv/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p"
2023-07-05 13:44:36.589320: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/3879/1c01/tmpjakmu9dc/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-05 13:44:36.590331: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/2c02/b7d5/tmphkjqvuor/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p"
2023-07-05 13:44:36.609831: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/33ad/4216/tmpwm_0r6nv/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p'" in 0.0413 seconds and 3.0 Mi memory
2023-07-05 13:44:36.610078: Running the command: "cactus_analyseAssembly HG02486.1.sanitized.fa"
2023-07-05 13:44:36.613236: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/ac47/55a2/tmp7qn2769z/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p'" in 0.0722 seconds and 3.1 Mi memory
2023-07-05 13:44:36.613490: Running the command: "cactus_analyseAssembly HG01106.1.sanitized.fa"
2023-07-05 13:44:36.616291: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/d3ac/b4fa/tmp2p0qx8pb/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p'" in 0.101 seconds and 3.1 Mi memory
2023-07-05 13:44:36.616561: Running the command: "cactus_analyseAssembly HG01358.1.sanitized.fa"
2023-07-05 13:44:36.620033: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/46ce/908d/tmp88yg96v4/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p'" in 0.0666 seconds and 3.1 Mi memory
2023-07-05 13:44:36.620251: Running the command: "cactus_analyseAssembly HG00621.1.sanitized.fa"
2023-07-05 13:44:36.622342: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/f58a/d646/tmpjsarpvb5/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p'" in 0.1023 seconds and 2.9 Mi memory
2023-07-05 13:44:36.622619: Running the command: "cactus_analyseAssembly HG02055.1.sanitized.fa"
2023-07-05 13:44:36.631528: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/2f0e/178c/tmp6tfe0yh8/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p'" in 0.0904 seconds and 3.0 Mi memory
2023-07-05 13:44:36.631975: Running the command: "cactus_analyseAssembly HG00673.1.sanitized.fa"
2023-07-05 13:44:36.636049: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/3879/1c01/tmpjakmu9dc/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p'" in 0.0456 seconds and 3.0 Mi memory
2023-07-05 13:44:36.636289: Running the command: "cactus_analyseAssembly HG01258.1.sanitized.fa"
2023-07-05 13:44:36.637060: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/d4ff/249c/tmph0a4um5i/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p'" in 0.1056 seconds and 3.0 Mi memory
2023-07-05 13:44:36.637339: Running the command: "cactus_analyseAssembly HG01243.1.sanitized.fa"
2023-07-05 13:44:36.638174: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/9af2/4153/tmpye83eg1a/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p'" in 0.0837 seconds and 3.0 Mi memory
2023-07-05 13:44:36.638603: Running the command: "cactus_analyseAssembly HG02717.1.sanitized.fa"
2023-07-05 13:44:36.657124: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/2c02/b7d5/tmphkjqvuor/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p'" in 0.0658 seconds and 3.1 Mi memory
2023-07-05 13:44:36.657383: Running the command: "cactus_analyseAssembly HG03492.1.sanitized.fa"
2023-07-05 13:44:36.678528: Successfully ran: "cactus_analyseAssembly HG02486.1.sanitized.fa" in 0.0679 seconds and 1.7 Mi memory
2023-07-05 13:44:36.680569: Successfully ran: "cactus_analyseAssembly HG01358.1.sanitized.fa" in 0.0633 seconds and 1.7 Mi memory
2023-07-05 13:44:36.680962: Successfully ran: "cactus_analyseAssembly HG01258.1.sanitized.fa" in 0.0442 seconds and 1.7 Mi memory
2023-07-05 13:44:36.681839: Successfully ran: "cactus_analyseAssembly HG02717.1.sanitized.fa" in 0.0423 seconds and 2.9 Mi memory
2023-07-05 13:44:36.683175: Successfully ran: "cactus_analyseAssembly HG01243.1.sanitized.fa" in 0.0452 seconds and 1.7 Mi memory
2023-07-05 13:44:36.683746: Successfully ran: "cactus_analyseAssembly HG01106.1.sanitized.fa" in 0.0696 seconds and 1.9 Mi memory
2023-07-05 13:44:36.689565: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 0.0687 seconds and 1.7 Mi memory
2023-07-05 13:44:36.692603: Successfully ran: "cactus_analyseAssembly HG02055.1.sanitized.fa" in 0.0693 seconds and 1.7 Mi memory
2023-07-05 13:44:36.700856: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 0.068 seconds and 1.7 Mi memory
2023-07-05 13:44:36.702892: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 0.045 seconds and 1.7 Mi memory
2023-07-05 13:44:37.611198: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/db8c/07ae/tmpl1n3czz9/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p"
2023-07-05 13:44:37.621394: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/a009/18c9/tmpkz1vgs47/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p"
2023-07-05 13:44:37.626305: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/8a18/e754/tmphw3iyrpq/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p"
2023-07-05 13:44:37.637374: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/68ea/8c5d/tmpqng8mq8w/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p"
2023-07-05 13:44:37.639629: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/8cd5/76f5/tmp8p4yi0q1/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p"
2023-07-05 13:44:37.642482: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/a075/4b6a/tmp373gg90x/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-05 13:44:37.646219: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/9600/ba40/tmp2w5e06x2/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p"
2023-07-05 13:44:37.650122: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/9684/2a54/tmpxnhiaoux/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p"
2023-07-05 13:44:37.655787: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/7a64/011a/tmpdwbtgstx/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p"
2023-07-05 13:44:37.661130: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/23c8/770c/tmpdze77zx1/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
2023-07-05 13:44:37.662501: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/7230/57eb/tmpepjz5nke/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p"
2023-07-05 13:44:37.668163: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/a8ec/9725/tmp5jdafbib/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p"
2023-07-05 13:44:37.669743: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/279b/2866/tmpyceoe1hk/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p"
2023-07-05 13:44:37.674291: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/f150/527d/tmpa4dhubs0/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p"
2023-07-05 13:44:37.677564: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/75e2/e365/tmpv30catpf/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p"
2023-07-05 13:44:37.681910: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/b94c/c557/tmps0rxf4b3/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p"
2023-07-05 13:44:37.684592: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/d0d2/d4d4/tmp5n_irgzv/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p"
2023-07-05 13:44:37.686252: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/eb6a/fb29/tmpcmpmq26w/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p"
2023-07-05 13:44:37.686602: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/9254/fb48/tmpmr6kdf_6/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p"
2023-07-05 13:44:37.704592: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/cc23/29b5/tmp9zqvz9n2/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p"
2023-07-05 13:44:37.705025: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/9e9f/f709/tmppmfxv0ay/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p"
2023-07-05 13:44:37.705956: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/bd80/ab99/tmp2yp4kdl8/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p"
2023-07-05 13:44:37.732736: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/9f4e/dff1/tmp8z8pbcab/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p"
2023-07-05 13:44:37.757376: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/75e9/3bea/tmpwdoovpxh/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p"
2023-07-05 13:44:37.757420: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/9bc9/1f4e/tmp6_wpgtde/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p"
2023-07-05 13:44:37.771364: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/003d/87a5/tmp8sij5z1b/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p"
2023-07-05 13:44:37.771484: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/16d9/8b6b/tmp0q1x22uk/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
2023-07-05 13:44:37.771600: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/05d9/ebb3/tmp63l81zbr/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p"
2023-07-05 13:44:37.771564: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/076b/ff58/tmp92tljj9c/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p"
2023-07-05 13:44:37.771772: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/ef45/889b/tmpditjt_qz/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-05 13:44:38.273229: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/7230/57eb/tmpepjz5nke/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p'" in 0.6095 seconds and 17.9 Mi memory
2023-07-05 13:44:38.276393: Running the command: "cactus_analyseAssembly HG02818.1.sanitized.fa"
2023-07-05 13:44:38.280858: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/f150/527d/tmpa4dhubs0/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p'" in 0.6053 seconds and 17.9 Mi memory
2023-07-05 13:44:38.284026: Running the command: "cactus_analyseAssembly NA20129.2.sanitized.fa"
2023-07-05 13:44:38.285772: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/b94c/c557/tmps0rxf4b3/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p'" in 0.6027 seconds and 20.0 Mi memory
2023-07-05 13:44:38.288729: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
2023-07-05 13:44:38.300755: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/75e2/e365/tmpv30catpf/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p'" in 0.6217 seconds and 51.9 Mi memory
2023-07-05 13:44:38.303593: Running the command: "cactus_analyseAssembly HG03453.2.sanitized.fa"
2023-07-05 13:44:38.308012: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/9e9f/f709/tmppmfxv0ay/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p'" in 0.6016 seconds and 17.9 Mi memory
2023-07-05 13:44:38.310645: Running the command: "cactus_analyseAssembly HG02572.1.sanitized.fa"
2023-07-05 13:44:38.315457: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/9254/fb48/tmpmr6kdf_6/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p'" in 0.627 seconds and 21.0 Mi memory
2023-07-05 13:44:38.318115: Running the command: "cactus_analyseAssembly HG01358.2.sanitized.fa"
Got message from job at time 07-05-2023 13:44:38: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 3 Total-length: 1548654 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 1045343 Median-sequence-length: 345628 Max-sequence-length: 1045343 Min-sequence-length: 157683

2023-07-05 13:44:38.318681: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/eb6a/fb29/tmpcmpmq26w/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p'" in 0.6309 seconds and 51.9 Mi memory
2023-07-05 13:44:38.323170: Running the command: "cactus_analyseAssembly HG02148.1.sanitized.fa"
2023-07-05 13:44:38.326319: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/d0d2/d4d4/tmp5n_irgzv/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p'" in 0.6403 seconds and 51.9 Mi memory
2023-07-05 13:44:38.406649: Running the command: "cactus_analyseAssembly HG02622.2.sanitized.fa"
2023-07-05 13:44:38.414732: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/75e9/3bea/tmpwdoovpxh/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p'" in 0.6561 seconds and 51.9 Mi memory
2023-07-05 13:44:38.417607: Running the command: "cactus_analyseAssembly HG00438.1.sanitized.fa"
2023-07-05 13:44:38.437852: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/ef45/889b/tmpditjt_qz/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p'" in 0.6646 seconds and 51.9 Mi memory
2023-07-05 13:44:38.733780: Successfully ran: "cactus_analyseAssembly HG02818.1.sanitized.fa" in 0.4564 seconds and 17.8 Mi memory
2023-07-05 13:44:38.743890: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 0.4589 seconds and 17.8 Mi memory
2023-07-05 13:44:38.745314: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 0.4337 seconds and 17.8 Mi memory
2023-07-05 13:44:38.749533: Successfully ran: "cactus_analyseAssembly HG03098.2.sanitized.fa" in 0.4598 seconds and 19.9 Mi memory
2023-07-05 13:44:38.759396: Successfully ran: "cactus_analyseAssembly HG01358.2.sanitized.fa" in 0.4403 seconds and 20.9 Mi memory
2023-07-05 13:44:38.768599: Successfully ran: "cactus_analyseAssembly HG02572.2.sanitized.fa" in 0.4167 seconds and 17.8 Mi memory
2023-07-05 13:44:38.769268: Successfully ran: "cactus_analyseAssembly HG02148.1.sanitized.fa" in 0.4451 seconds and 51.9 Mi memory
2023-07-05 13:44:38.778361: Successfully ran: "cactus_analyseAssembly HG01071.2.sanitized.fa" in 0.4459 seconds and 17.8 Mi memory
2023-07-05 13:44:38.784904: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 0.4549 seconds and 51.9 Mi memory
2023-07-05 13:44:38.786465: Successfully ran: "cactus_analyseAssembly HG01123.1.sanitized.fa" in 0.4293 seconds and 18.9 Mi memory
2023-07-05 13:44:38.789516: Successfully ran: "cactus_analyseAssembly HG01243.1.sanitized.fa" in 0.4206 seconds and 24.3 Mi memory
2023-07-05 13:44:38.790268: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 0.4857 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:44:38: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 3 Total-length: 965371 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 631921 Median-sequence-length: 195506 Max-sequence-length: 631921 Min-sequence-length: 137944

2023-07-05 13:44:38.797563: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 0.4275 seconds and 23.5 Mi memory
2023-07-05 13:44:38.806748: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 0.4246 seconds and 25.3 Mi memory
2023-07-05 13:44:38.812532: Successfully ran: "cactus_analyseAssembly HG01978.1.sanitized.fa" in 0.4552 seconds and 51.9 Mi memory
2023-07-05 13:44:38.814603: Successfully ran: "cactus_analyseAssembly HG02717.2.sanitized.fa" in 0.4418 seconds and 51.9 Mi memory
2023-07-05 13:44:38.815325: Successfully ran: "cactus_analyseAssembly HG02080.1.sanitized.fa" in 0.427 seconds and 17.8 Mi memory
2023-07-05 13:44:38.893497: Successfully ran: "cactus_analyseAssembly HG00735.2.sanitized.fa" in 0.4518 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:44:39: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 12 Total-length: 1966357 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 195402 Median-sequence-length: 116363 Max-sequence-length: 636148 Min-sequence-length: 35923

Got message from job at time 07-05-2023 13:44:39: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 8 Total-length: 1528373 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 162342 Median-sequence-length: 153132 Max-sequence-length: 691714 Min-sequence-length: 17358

Got message from job at time 07-05-2023 13:44:39: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 10 Total-length: 1777824 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 514136 Median-sequence-length: 53467 Max-sequence-length: 647951 Min-sequence-length: 27214

Got message from job at time 07-05-2023 13:44:39: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 14 Total-length: 2133205 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 301361 Median-sequence-length: 86353 Max-sequence-length: 631312 Min-sequence-length: 28914

Got message from job at time 07-05-2023 13:44:39: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 13 Total-length: 2328824 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 346987 Median-sequence-length: 47227 Max-sequence-length: 619142 Min-sequence-length: 22037

Got message from job at time 07-05-2023 13:44:39: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 11 Total-length: 2200621 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 281291 Median-sequence-length: 145934 Max-sequence-length: 569004 Min-sequence-length: 45943

Got message from job at time 07-05-2023 13:44:39: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 7 Total-length: 1963405 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 518784 Median-sequence-length: 119542 Max-sequence-length: 868565 Min-sequence-length: 25930

Got message from job at time 07-05-2023 13:44:39: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 9 Total-length: 2084239 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 568725 Median-sequence-length: 119888 Max-sequence-length: 629995 Min-sequence-length: 47783

2023-07-05 13:44:41.240134: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/179f/e21e/tmpkqi2mr3x/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p"
2023-07-05 13:44:41.253346: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/7d4c/989a/tmp7j0uovc5/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p"
2023-07-05 13:44:41.254828: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/1fab/0166/tmpxe126chw/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p"
2023-07-05 13:44:41.255428: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/92a5/49f4/tmp0d_oqkx0/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p"
2023-07-05 13:44:41.257775: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/8c83/f650/tmp01ob10pf/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
2023-07-05 13:44:41.258347: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/b367/e64f/tmplks5qkj0/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p"
2023-07-05 13:44:41.258806: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/610d/3bdd/tmpem299fp7/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p"
2023-07-05 13:44:41.641130: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/950e/8c30/tmpnv2ar1e7/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p"
2023-07-05 13:44:41.710320: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/55e7/9655/tmpsjjqhr98/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:44:41.717666: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/bc92/e53b/tmps_0kt7_0/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p"
2023-07-05 13:44:41.761262: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/950e/8c30/tmpnv2ar1e7/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p'" in 0.1192 seconds and 3.0 Mi memory
2023-07-05 13:44:41.761512: Running the command: "cactus_analyseAssembly HG03579.1.sanitized.fa"
2023-07-05 13:44:41.761834: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/6455/c4bc/tmpi47qmqkn/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p"
2023-07-05 13:44:41.762489: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/54b0/d357/tmp_i5krktv/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p"
2023-07-05 13:44:41.785921: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/6349/31b4/tmp0b_yd1p7/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p"
2023-07-05 13:44:41.788637: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/55e7/9655/tmpsjjqhr98/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p'" in 0.0769 seconds and 2.9 Mi memory
2023-07-05 13:44:41.788885: Running the command: "cactus_analyseAssembly HG01109.1.sanitized.fa"
2023-07-05 13:44:41.800592: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/bc92/e53b/tmps_0kt7_0/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p'" in 0.0817 seconds and 3.1 Mi memory
2023-07-05 13:44:41.800858: Running the command: "cactus_analyseAssembly HG01928.1.sanitized.fa"
2023-07-05 13:44:41.815459: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e734/03da/tmpjvzvyhrv/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:44:41.849059: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/6455/c4bc/tmpi47qmqkn/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p'" in 0.0861 seconds and 3.0 Mi memory
2023-07-05 13:44:41.849298: Running the command: "cactus_analyseAssembly HG02572.1.sanitized.fa"
2023-07-05 13:44:41.850579: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/54b0/d357/tmp_i5krktv/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p'" in 0.0867 seconds and 3.0 Mi memory
2023-07-05 13:44:41.850829: Running the command: "cactus_analyseAssembly HG01952.1.sanitized.fa"
2023-07-05 13:44:41.874431: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/6349/31b4/tmp0b_yd1p7/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p'" in 0.0872 seconds and 3.0 Mi memory
2023-07-05 13:44:41.874671: Running the command: "cactus_analyseAssembly HG03098.1.sanitized.fa"
2023-07-05 13:44:41.885833: Successfully ran: "cactus_analyseAssembly HG03579.1.sanitized.fa" in 0.1236 seconds and 2.9 Mi memory
2023-07-05 13:44:41.910643: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e734/03da/tmpjvzvyhrv/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p'" in 0.0938 seconds and 3.1 Mi memory
2023-07-05 13:44:41.910907: Running the command: "cactus_analyseAssembly HG02145.1.sanitized.fa"
2023-07-05 13:44:41.923524: Successfully ran: "cactus_analyseAssembly HG01952.1.sanitized.fa" in 0.0721 seconds and 1.7 Mi memory
2023-07-05 13:44:41.926142: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 0.0762 seconds and 1.7 Mi memory
2023-07-05 13:44:41.927243: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 0.1376 seconds and 1.7 Mi memory
2023-07-05 13:44:41.943523: Successfully ran: "cactus_analyseAssembly HG03098.1.sanitized.fa" in 0.0682 seconds and 1.7 Mi memory
2023-07-05 13:44:41.945210: Successfully ran: "cactus_analyseAssembly HG01928.1.sanitized.fa" in 0.1436 seconds and 1.7 Mi memory
2023-07-05 13:44:41.993343: Successfully ran: "cactus_analyseAssembly HG02145.1.sanitized.fa" in 0.0818 seconds and 1.7 Mi memory
2023-07-05 13:44:42.004013: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/d7a6/a7cd/tmpgru_g578/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p"
2023-07-05 13:44:42.008974: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/90e1/7ace/tmp59_7t3vl/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p"
2023-07-05 13:44:42.048247: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/6809/8696/tmp811yutam/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p"
2023-07-05 13:44:42.049977: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/ea86/986f/tmpumf8byq_/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p"
2023-07-05 13:44:42.051596: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/28e9/936e/tmpo4smgmj2/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p"
2023-07-05 13:44:42.056754: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/4ab2/a364/tmpdmpecyk6/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p"
2023-07-05 13:44:42.063016: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/0ae7/2408/tmpzc0okcfv/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p"
2023-07-05 13:44:42.068473: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/a658/2a83/tmpwj7wcaoq/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-05 13:44:42.079771: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/ee91/68f8/tmpiqsgfpdp/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p"
2023-07-05 13:44:42.080480: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/875c/1112/tmpeqy5rbux/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p"
2023-07-05 13:44:42.081883: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/c875/d708/tmppxquxqmb/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p"
2023-07-05 13:44:42.086411: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/c1fc/4d2c/tmpm09uptnf/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p"
2023-07-05 13:44:42.090910: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/dac5/c07c/tmpgduu5zch/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p"
2023-07-05 13:44:42.092553: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/f290/e1d4/tmpavj85jg9/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p"
2023-07-05 13:44:42.095966: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/0bee/16c5/tmpyj3et4kp/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
2023-07-05 13:44:42.100735: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/6530/79ce/tmp86cp3e13/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p"
2023-07-05 13:44:42.102396: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/1d2c/4092/tmpxkixkyq8/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p"
2023-07-05 13:44:42.105755: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/6c58/be80/tmpqnkmafi0/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-05 13:44:42.110253: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/f7b5/5143/tmp_jku8zg2/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
2023-07-05 13:44:42.110270: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/ad0f/44e0/tmpqvtlj040/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-05 13:44:42.116259: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/8cfc/5351/tmpu4v7bav3/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p"
2023-07-05 13:44:42.119710: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/d38a/e705/tmp7siny67d/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p"
2023-07-05 13:44:42.122566: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/72b1/8f16/tmpeiebxflg/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p"
2023-07-05 13:44:42.125201: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/f841/2b0e/tmpkrzte9sx/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p"
2023-07-05 13:44:42.125314: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/30d0/4c38/tmpzcrimlzu/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p"
2023-07-05 13:44:42.126012: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/3cfb/3cf1/tmp5qc6rc4f/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p"
2023-07-05 13:44:42.134949: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/94de/7333/tmpdollvt36/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
2023-07-05 13:44:42.135533: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/4fdc/ef8d/tmp5ceubmct/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p"
2023-07-05 13:44:42.136613: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/8428/a781/tmp13fr3we2/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-05 13:44:42.139222: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/e390/ba49/tmpw41dnkoi/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p"
2023-07-05 13:44:42.139933: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/d894/e658/tmpguxil0hp/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p"
2023-07-05 13:44:42.142411: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/e677/25e6/tmpmjj349oa/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p"
2023-07-05 13:44:42.147054: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/8ef6/994d/tmpn55qcypd/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p"
2023-07-05 13:44:42.147152: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/7fe7/7d7f/tmpysp1yth9/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p"
2023-07-05 13:44:42.149842: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/5c8a/ca8d/tmpgd8hq02r/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p"
2023-07-05 13:44:42.152601: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/18ba/1e59/tmpzh0xjpxk/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p"
2023-07-05 13:44:42.153560: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/cafe/2f45/tmpac6brwtj/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p"
2023-07-05 13:44:42.155880: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/d777/41ed/tmpjptmnggi/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:44:42.155987: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/d1e4/3293/tmpwhrx1ckv/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p"
2023-07-05 13:44:42.156296: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/5255/1daa/tmp0aivfqqw/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p"
2023-07-05 13:44:42.157215: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/59d1/63ed/tmp4f37z3g3/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p"
2023-07-05 13:44:42.157461: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/b540/135d/tmppy00d9vt/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p"
2023-07-05 13:44:42.161183: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/9dc3/8931/tmp6ubwzp1u/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p"
2023-07-05 13:44:42.161528: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/e2b6/0e48/tmpzja4bg8j/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p"
2023-07-05 13:44:42.162412: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/e5e3/f0ec/tmpkrbt8twn/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p"
2023-07-05 13:44:42.163249: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/15dd/a004/tmpyeaumgy8/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p"
2023-07-05 13:44:42.163301: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/a19e/4d6f/tmp62fu9x40/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-05 13:44:42.164664: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/4d7f/cf32/tmp0hvhdpff/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
2023-07-05 13:44:42.166658: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/e7be/859b/tmp3ujzl3o2/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
2023-07-05 13:44:42.167593: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/6b32/dc93/tmpg1ci3zqi/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p"
2023-07-05 13:44:42.168054: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/df91/3554/tmpev88lys3/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p"
2023-07-05 13:44:42.169391: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/6345/13f6/tmpxp_zklfi/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p"
2023-07-05 13:44:42.169594: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/de21/cdc6/tmpcw1g6_tb/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p"
2023-07-05 13:44:42.178606: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/f71b/d0ab/tmp1845zlbb/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
2023-07-05 13:44:42.909645: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/179f/e21e/tmpkqi2mr3x/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p'" in 1.6683 seconds and 51.9 Mi memory
2023-07-05 13:44:42.913503: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/8c83/f650/tmp01ob10pf/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p'" in 1.6548 seconds and 76.6 Mi memory
2023-07-05 13:44:42.917128: Running the command: "cactus_analyseAssembly HG02630.2.sanitized.fa"
2023-07-05 13:44:42.917408: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/7d4c/989a/tmp7j0uovc5/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p'" in 1.6627 seconds and 57.8 Mi memory
2023-07-05 13:44:42.920974: Running the command: "cactus_analyseAssembly HG02717.1.sanitized.fa"
2023-07-05 13:44:42.924788: Running the command: "cactus_analyseAssembly HG02145.2.sanitized.fa"
2023-07-05 13:44:42.928307: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/1fab/0166/tmpxe126chw/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p'" in 1.6723 seconds and 154.0 Mi memory
2023-07-05 13:44:42.934330: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/b367/e64f/tmplks5qkj0/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p'" in 1.6752 seconds and 176.8 Mi memory
2023-07-05 13:44:42.935575: Running the command: "cactus_analyseAssembly HG01361.2.sanitized.fa"
2023-07-05 13:44:42.941406: Running the command: "cactus_analyseAssembly HG01071.2.sanitized.fa"
2023-07-05 13:44:42.975588: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/92a5/49f4/tmp0d_oqkx0/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p'" in 1.719 seconds and 153.9 Mi memory
2023-07-05 13:44:42.982590: Running the command: "cactus_analyseAssembly HG02257.2.sanitized.fa"
2023-07-05 13:44:43.005268: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/610d/3bdd/tmpem299fp7/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p'" in 1.7455 seconds and 154.0 Mi memory
2023-07-05 13:44:43.012089: Running the command: "cactus_analyseAssembly HG02572.1.sanitized.fa"
2023-07-05 13:44:43.662901: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/d38a/e705/tmp7siny67d/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p'" in 1.5419 seconds and 18.7 Mi memory
2023-07-05 13:44:43.672065: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/0bee/16c5/tmpyj3et4kp/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p'" in 1.5746 seconds and 17.9 Mi memory
2023-07-05 13:44:43.676596: Running the command: "cactus_analyseAssembly HG02723.2.sanitized.fa"
2023-07-05 13:44:43.680170: Running the command: "cactus_analyseAssembly HG02109.2.sanitized.fa"
2023-07-05 13:44:43.706231: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/d7a6/a7cd/tmpgru_g578/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p'" in 1.7007 seconds and 21.0 Mi memory
2023-07-05 13:44:43.714204: Running the command: "cactus_analyseAssembly HG02818.2.sanitized.fa"
2023-07-05 13:44:43.715256: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/f841/2b0e/tmpkrzte9sx/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 1.5884 seconds and 18.7 Mi memory
2023-07-05 13:44:43.715785: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/ea86/986f/tmpumf8byq_/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p'" in 1.6643 seconds and 19.4 Mi memory
2023-07-05 13:44:43.716456: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/e5e3/f0ec/tmpkrbt8twn/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p'" in 1.5527 seconds and 17.9 Mi memory
2023-07-05 13:44:43.716734: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/cafe/2f45/tmpac6brwtj/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p'" in 1.5617 seconds and 22.0 Mi memory
2023-07-05 13:44:43.723996: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-05 13:44:43.724528: Running the command: "cactus_analyseAssembly HG01243.2.sanitized.fa"
2023-07-05 13:44:43.725181: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
2023-07-05 13:44:43.725241: Running the command: "cactus_analyseAssembly HG02818.1.sanitized.fa"
2023-07-05 13:44:43.725513: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/90e1/7ace/tmp59_7t3vl/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p'" in 1.7151 seconds and 51.9 Mi memory
2023-07-05 13:44:43.735624: Running the command: "cactus_analyseAssembly NA21309.2.sanitized.fa"
2023-07-05 13:44:43.737397: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/de21/cdc6/tmpcw1g6_tb/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p'" in 1.5661 seconds and 19.2 Mi memory
2023-07-05 13:44:43.821103: Running the command: "cactus_analyseAssembly HG00741.1.sanitized.fa"
2023-07-05 13:44:43.822109: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/8ef6/994d/tmpn55qcypd/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p'" in 1.6738 seconds and 51.9 Mi memory
2023-07-05 13:44:43.825555: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/d777/41ed/tmpjptmnggi/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 1.6682 seconds and 153.9 Mi memory
2023-07-05 13:44:43.826140: Running the command: "cactus_analyseAssembly HG01978.2.sanitized.fa"
2023-07-05 13:44:44.145717: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 1.2278 seconds and 51.8 Mi memory
2023-07-05 13:44:44.171116: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 1.2456 seconds and 57.8 Mi memory
2023-07-05 13:44:44.171143: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/a19e/4d6f/tmp62fu9x40/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p'" in 2.0066 seconds and 51.9 Mi memory
2023-07-05 13:44:44.173910: Successfully ran: "cactus_analyseAssembly HG02717.1.sanitized.fa" in 1.2524 seconds and 76.5 Mi memory
2023-07-05 13:44:44.177383: Running the command: "cactus_analyseAssembly HG01175.2.sanitized.fa"
2023-07-05 13:44:44.210462: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 1.2742 seconds and 153.9 Mi memory
2023-07-05 13:44:44.218507: Successfully ran: "cactus_analyseAssembly HG02257.2.sanitized.fa" in 1.2352 seconds and 153.9 Mi memory
2023-07-05 13:44:44.244815: Successfully ran: "cactus_analyseAssembly HG01071.2.sanitized.fa" in 1.3027 seconds and 176.8 Mi memory
2023-07-05 13:44:44.264564: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 1.2518 seconds and 153.9 Mi memory
2023-07-05 13:44:44.376551: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/b072/26de/tmplhu19oce/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p"
2023-07-05 13:44:44.396643: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/879b/d2c6/tmp_6_1gj26/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p"
2023-07-05 13:44:44.397041: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/d53f/e80b/tmpc4240v1a/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p"
2023-07-05 13:44:44.399002: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/5314/109e/tmpm5b889w3/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-05 13:44:44.400942: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/62ec/0c0b/tmprtwfu61u/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
2023-07-05 13:44:44.401922: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/1045/acc6/tmpdivpgdiw/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p"
2023-07-05 13:44:44.403599: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/8cdb/328b/tmpb6ayabw3/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p"
2023-07-05 13:44:44.405091: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/c5f5/cc6e/tmpz5uv3rs1/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
2023-07-05 13:44:44.405441: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/e9a5/447b/tmpdrusysw_/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:44:44.405636: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/6d67/c923/tmp4udtzhww/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p"
2023-07-05 13:44:44.409167: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/3a15/f83e/tmpduv312qr/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-05 13:44:44.417671: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/59e3/3660/tmpnjjwkqcy/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p"
2023-07-05 13:44:44.419821: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/6dcf/2973/tmpxprhe945/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p"
2023-07-05 13:44:44.420741: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/ed7a/f459/tmpx13wat9j/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p"
2023-07-05 13:44:44.421484: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/64dc/eda4/tmp68vddmtb/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p"
2023-07-05 13:44:44.423269: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/53b2/7b41/tmp5rsjj5qv/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p"
2023-07-05 13:44:44.424237: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/7b67/19eb/tmpxdgnod2k/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p"
2023-07-05 13:44:44.431074: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/97b0/6699/tmpc2y2lgbr/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
2023-07-05 13:44:44.431518: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/facc/1263/tmpjphti4w5/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p"
2023-07-05 13:44:44.433825: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/a299/4507/tmp1q_mnwyj/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p"
2023-07-05 13:44:44.433866: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/a66a/f11b/tmpj5yi68e4/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p"
2023-07-05 13:44:44.437841: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/5bd0/0c63/tmpaijqka5c/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p"
2023-07-05 13:44:44.444859: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/4564/16eb/tmppm4n6jb7/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:44:44.446241: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/e94e/ec67/tmpaz7d1bcc/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p"
2023-07-05 13:44:44.447212: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/1030/8e9e/tmpx0qya1nx/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p"
2023-07-05 13:44:44.447454: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/03e2/8a74/tmp_dmgnxek/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p"
2023-07-05 13:44:44.448056: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/affd/214e/tmpu9gkst0l/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p"
2023-07-05 13:44:44.448934: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/a09f/d79f/tmpprthzgy4/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p"
2023-07-05 13:44:44.450952: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/be20/c196/tmppen9082i/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p"
2023-07-05 13:44:44.451737: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/da22/dfaa/tmp_l96uash/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p"
2023-07-05 13:44:44.481649: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/c67c/0f26/tmp5kbl3_uh/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
2023-07-05 13:44:44.624677: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 0.9469 seconds and 18.6 Mi memory
2023-07-05 13:44:44.639112: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 0.958 seconds and 17.8 Mi memory
2023-07-05 13:44:44.682517: Successfully ran: "cactus_analyseAssembly HG01243.2.sanitized.fa" in 0.957 seconds and 19.4 Mi memory
2023-07-05 13:44:44.688121: Successfully ran: "cactus_analyseAssembly HG03098.2.sanitized.fa" in 0.962 seconds and 22.0 Mi memory
2023-07-05 13:44:44.688313: Successfully ran: "cactus_analyseAssembly HG02818.1.sanitized.fa" in 0.9621 seconds and 17.8 Mi memory
2023-07-05 13:44:44.689271: Successfully ran: "cactus_analyseAssembly HG02723.1.sanitized.fa" in 0.9643 seconds and 18.6 Mi memory
2023-07-05 13:44:44.698792: Successfully ran: "cactus_analyseAssembly NA21309.2.sanitized.fa" in 0.9624 seconds and 17.8 Mi memory
2023-07-05 13:44:44.700427: Successfully ran: "cactus_analyseAssembly HG02886.1.sanitized.fa" in 0.9605 seconds and 17.8 Mi memory
2023-07-05 13:44:44.703592: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 0.9882 seconds and 20.9 Mi memory
2023-07-05 13:44:44.707219: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 0.9612 seconds and 19.1 Mi memory
2023-07-05 13:44:44.713425: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 0.9794 seconds and 51.9 Mi memory
2023-07-05 13:44:44.719786: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 0.9598 seconds and 19.9 Mi memory
2023-07-05 13:44:44.728708: Successfully ran: "cactus_analyseAssembly HG00733.1.sanitized.fa" in 0.9804 seconds and 51.9 Mi memory
2023-07-05 13:44:44.729157: Successfully ran: "cactus_analyseAssembly HG02717.2.sanitized.fa" in 0.9762 seconds and 51.9 Mi memory
2023-07-05 13:44:44.730978: Successfully ran: "cactus_analyseAssembly HG03579.2.sanitized.fa" in 0.9825 seconds and 17.8 Mi memory
2023-07-05 13:44:44.736902: Successfully ran: "cactus_analyseAssembly HG03486.1.sanitized.fa" in 0.9688 seconds and 17.8 Mi memory
2023-07-05 13:44:44.737423: Successfully ran: "cactus_analyseAssembly NA20129.1.sanitized.fa" in 0.9879 seconds and 17.8 Mi memory
2023-07-05 13:44:44.742245: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 0.9785 seconds and 51.9 Mi memory
2023-07-05 13:44:44.743769: Successfully ran: "cactus_analyseAssembly HG02109.1.sanitized.fa" in 0.9928 seconds and 17.8 Mi memory
2023-07-05 13:44:44.748987: Successfully ran: "cactus_analyseAssembly HG03540.1.sanitized.fa" in 0.967 seconds and 21.4 Mi memory
2023-07-05 13:44:44.749060: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 0.9835 seconds and 22.5 Mi memory
2023-07-05 13:44:44.762713: Successfully ran: "cactus_analyseAssembly HG00735.2.sanitized.fa" in 0.9808 seconds and 51.9 Mi memory
2023-07-05 13:44:44.766718: Successfully ran: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa" in 1.0135 seconds and 7.0 Mi memory
2023-07-05 13:44:44.779347: Successfully ran: "cactus_analyseAssembly NA18906.1.sanitized.fa" in 1.0073 seconds and 51.9 Mi memory
2023-07-05 13:44:44.781034: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 1.0102 seconds and 51.9 Mi memory
2023-07-05 13:44:44.784491: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 1.022 seconds and 51.9 Mi memory
2023-07-05 13:44:44.786502: Successfully ran: "cactus_analyseAssembly HG01071.2.sanitized.fa" in 0.9901 seconds and 51.9 Mi memory
2023-07-05 13:44:44.786511: Successfully ran: "cactus_analyseAssembly NA18906.2.sanitized.fa" in 1.0095 seconds and 51.9 Mi memory
2023-07-05 13:44:44.786805: Successfully ran: "cactus_analyseAssembly HG01361.1.sanitized.fa" in 0.9889 seconds and 51.9 Mi memory
2023-07-05 13:44:44.788283: Successfully ran: "cactus_analyseAssembly HG02572.2.sanitized.fa" in 1.0042 seconds and 51.9 Mi memory
2023-07-05 13:44:44.790214: Successfully ran: "cactus_analyseAssembly HG02148.1.sanitized.fa" in 0.9848 seconds and 51.9 Mi memory
2023-07-05 13:44:44.791230: Successfully ran: "cactus_analyseAssembly HG00735.1.sanitized.fa" in 0.9922 seconds and 51.9 Mi memory
2023-07-05 13:44:44.794527: Successfully ran: "cactus_analyseAssembly HG01952.2.sanitized.fa" in 1.0247 seconds and 51.9 Mi memory
2023-07-05 13:44:44.795373: Successfully ran: "cactus_analyseAssembly HG02630.1.sanitized.fa" in 0.9913 seconds and 19.1 Mi memory
2023-07-05 13:44:44.796882: Successfully ran: "cactus_analyseAssembly HG01358.2.sanitized.fa" in 0.9766 seconds and 51.9 Mi memory
2023-07-05 13:44:44.796956: Successfully ran: "cactus_analyseAssembly HG00741.2.sanitized.fa" in 1.0147 seconds and 51.9 Mi memory
2023-07-05 13:44:44.799963: Successfully ran: "cactus_analyseAssembly HG02622.1.sanitized.fa" in 1.0149 seconds and 51.9 Mi memory
2023-07-05 13:44:44.800035: Successfully ran: "cactus_analyseAssembly HG03540.2.sanitized.fa" in 0.9966 seconds and 21.7 Mi memory
2023-07-05 13:44:44.806481: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 1.0156 seconds and 51.9 Mi memory
2023-07-05 13:44:44.808665: Successfully ran: "cactus_analyseAssembly HG01978.1.sanitized.fa" in 0.9937 seconds and 51.9 Mi memory
2023-07-05 13:44:44.814093: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 1.0111 seconds and 51.9 Mi memory
2023-07-05 13:44:44.814818: Successfully ran: "cactus_analyseAssembly HG01891.2.sanitized.fa" in 1.0185 seconds and 51.9 Mi memory
2023-07-05 13:44:44.818966: Successfully ran: "cactus_analyseAssembly HG02486.2.sanitized.fa" in 0.9847 seconds and 51.9 Mi memory
2023-07-05 13:44:44.834277: Successfully ran: "cactus_analyseAssembly HG00741.1.sanitized.fa" in 1.0122 seconds and 51.9 Mi memory
2023-07-05 13:44:44.846767: Successfully ran: "cactus_analyseAssembly HG01978.2.sanitized.fa" in 1.0196 seconds and 51.9 Mi memory
2023-07-05 13:44:44.851692: Successfully ran: "cactus_analyseAssembly HG01123.2.sanitized.fa" in 1.0133 seconds and 51.9 Mi memory
2023-07-05 13:44:44.854659: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 1.0164 seconds and 59.6 Mi memory
2023-07-05 13:44:44.856979: Successfully ran: "cactus_analyseAssembly HG02559.2.sanitized.fa" in 1.002 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:44:44: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 3 Total-length: 1898614 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 1038963 Median-sequence-length: 509314 Max-sequence-length: 1038963 Min-sequence-length: 350337

2023-07-05 13:44:44.868377: Successfully ran: "cactus_analyseAssembly HG01928.2.sanitized.fa" in 1.0148 seconds and 51.9 Mi memory
2023-07-05 13:44:44.896875: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 1.0584 seconds and 153.9 Mi memory
2023-07-05 13:44:44.920084: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 1.0866 seconds and 153.9 Mi memory
2023-07-05 13:44:44.924983: Successfully ran: "cactus_analyseAssembly CHM13.sanitized.fa" in 1.0841 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 8 Total-length: 134349893 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17584823 Median-sequence-length: 11903651 Max-sequence-length: 59327303 Min-sequence-length: 2094706

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 8 Total-length: 1801110 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 347903 Median-sequence-length: 211071 Max-sequence-length: 680577 Min-sequence-length: 22906

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 4 Total-length: 134692096 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 69038597 Median-sequence-length: 39982594 Max-sequence-length: 69038597 Min-sequence-length: 2109168

Got message from job at time 07-05-2023 13:44:45: Assembly stats for NA20129.1: Input-sample: NA20129.1.sanitized.fa Total-sequences: 14 Total-length: 134567977 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37518561 Median-sequence-length: 5453413 Max-sequence-length: 37713027 Min-sequence-length: 58089

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 12 Total-length: 135264035 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 72158376 Median-sequence-length: 5521681 Max-sequence-length: 72158376 Min-sequence-length: 56338

2023-07-05 13:44:45.162842: Successfully ran: "cactus_analyseAssembly HG01175.2.sanitized.fa" in 0.9845 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 4 Total-length: 1520071 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 831627 Median-sequence-length: 500503 Max-sequence-length: 831627 Min-sequence-length: 45643

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 8 Total-length: 1838149 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 355277 Median-sequence-length: 193420 Max-sequence-length: 623794 Min-sequence-length: 25284

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 9 Total-length: 134818728 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42022043 Median-sequence-length: 5996715 Max-sequence-length: 66981844 Min-sequence-length: 26155

Got message from job at time 07-05-2023 13:44:45: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 18466 Total-length: 137250154 Proportion-repeat-masked: 0.003894 ProportionNs: 0.003894 Total-Ns: 534424 N50: 82640 Median-sequence-length: 99 Max-sequence-length: 1895031 Min-sequence-length: 1

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 8 Total-length: 135329698 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37194958 Median-sequence-length: 11660235 Max-sequence-length: 55535477 Min-sequence-length: 42938

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 7 Total-length: 136208265 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 113292615 Median-sequence-length: 553613 Max-sequence-length: 113292615 Min-sequence-length: 58085

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 8 Total-length: 134518404 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 75416175 Median-sequence-length: 7076333 Max-sequence-length: 75416175 Min-sequence-length: 62326

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 14 Total-length: 135451808 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29412010 Median-sequence-length: 6315950 Max-sequence-length: 40040231 Min-sequence-length: 46625

2023-07-05 13:44:45.358748: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 1.5553 seconds and 25.1 Mi memory
Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 4 Total-length: 1950943 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 533820 Median-sequence-length: 533820 Max-sequence-length: 854571 Min-sequence-length: 117113

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 3 Total-length: 134345530 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 134206333 Median-sequence-length: 82919 Max-sequence-length: 134206333 Min-sequence-length: 56278

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG03540.1: Input-sample: HG03540.1.sanitized.fa Total-sequences: 7 Total-length: 134566594 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 88867354 Median-sequence-length: 8986677 Max-sequence-length: 88867354 Min-sequence-length: 29802

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 11 Total-length: 137081581 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32449762 Median-sequence-length: 5634070 Max-sequence-length: 37458231 Min-sequence-length: 46160

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 9 Total-length: 134768994 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30505196 Median-sequence-length: 8474818 Max-sequence-length: 39012418 Min-sequence-length: 437287

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 6 Total-length: 1983109 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 449458 Median-sequence-length: 347194 Max-sequence-length: 639439 Min-sequence-length: 24594

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 3 Total-length: 137084016 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 122998407 Median-sequence-length: 8791261 Max-sequence-length: 122998407 Min-sequence-length: 5294348

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 12 Total-length: 134715587 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22969038 Median-sequence-length: 7729373 Max-sequence-length: 32427715 Min-sequence-length: 1550773

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 16 Total-length: 132449169 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14558936 Median-sequence-length: 5994087 Max-sequence-length: 32179831 Min-sequence-length: 428824

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 17 Total-length: 136632232 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17231040 Median-sequence-length: 7424966 Max-sequence-length: 33573583 Min-sequence-length: 31487

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 18 Total-length: 136553069 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24460901 Median-sequence-length: 3892270 Max-sequence-length: 31233150 Min-sequence-length: 39358

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 6 Total-length: 133780464 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 67653974 Median-sequence-length: 23573583 Max-sequence-length: 67653974 Min-sequence-length: 60330

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 5 Total-length: 135891002 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 101235124 Median-sequence-length: 8989362 Max-sequence-length: 101235124 Min-sequence-length: 42666

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 17 Total-length: 2520817 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 345422 Median-sequence-length: 75534 Max-sequence-length: 509497 Min-sequence-length: 17948

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 10 Total-length: 135520483 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 97710545 Median-sequence-length: 552899 Max-sequence-length: 97710545 Min-sequence-length: 47764

2023-07-05 13:44:45.595854: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/e9a5/447b/tmpdrusysw_/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p'" in 1.1895 seconds and 18.9 Mi memory
2023-07-05 13:44:45.599111: Running the command: "cactus_analyseAssembly HG01109.1.sanitized.fa"
2023-07-05 13:44:45.609320: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/53b2/7b41/tmp5rsjj5qv/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p'" in 1.1853 seconds and 21.5 Mi memory
2023-07-05 13:44:45.610236: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/6d67/c923/tmp4udtzhww/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p'" in 1.2036 seconds and 21.5 Mi memory
2023-07-05 13:44:45.612864: Running the command: "cactus_analyseAssembly HG03492.1.sanitized.fa"
2023-07-05 13:44:45.613337: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/1030/8e9e/tmpx0qya1nx/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p'" in 1.1653 seconds and 17.9 Mi memory
2023-07-05 13:44:45.613771: Running the command: "cactus_analyseAssembly HG02886.1.sanitized.fa"
2023-07-05 13:44:45.616601: Running the command: "cactus_analyseAssembly HG02630.2.sanitized.fa"
2023-07-05 13:44:45.619209: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/59e3/3660/tmpnjjwkqcy/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p'" in 1.2003 seconds and 23.8 Mi memory
2023-07-05 13:44:45.622030: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/b072/26de/tmplhu19oce/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p'" in 1.2441 seconds and 21.5 Mi memory
2023-07-05 13:44:45.622622: Running the command: "cactus_analyseAssembly HG03579.2.sanitized.fa"
2023-07-05 13:44:45.625163: Running the command: "cactus_analyseAssembly HG02886.2.sanitized.fa"
2023-07-05 13:44:45.625691: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/c67c/0f26/tmp5kbl3_uh/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p'" in 1.143 seconds and 19.2 Mi memory
2023-07-05 13:44:45.625938: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/3a15/f83e/tmpduv312qr/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p'" in 1.216 seconds and 51.9 Mi memory
2023-07-05 13:44:45.627986: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/facc/1263/tmpjphti4w5/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p'" in 1.1958 seconds and 21.2 Mi memory
2023-07-05 13:44:45.628245: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/affd/214e/tmpu9gkst0l/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p'" in 1.1793 seconds and 19.9 Mi memory
2023-07-05 13:44:45.629176: Running the command: "cactus_analyseAssembly HG02109.2.sanitized.fa"
2023-07-05 13:44:45.629330: Running the command: "cactus_analyseAssembly HG00733.2.sanitized.fa"
2023-07-05 13:44:45.631312: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
2023-07-05 13:44:45.631747: Running the command: "cactus_analyseAssembly HG01109.2.sanitized.fa"
2023-07-05 13:44:45.635226: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/ed7a/f459/tmpx13wat9j/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p'" in 1.2137 seconds and 18.1 Mi memory
2023-07-05 13:44:45.635430: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/a299/4507/tmp1q_mnwyj/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p'" in 1.2005 seconds and 51.9 Mi memory
2023-07-05 13:44:45.638767: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/64dc/eda4/tmp68vddmtb/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p'" in 1.2164 seconds and 51.8 Mi memory
2023-07-05 13:44:45.638873: Running the command: "cactus_analyseAssembly HG02723.2.sanitized.fa"
2023-07-05 13:44:45.639119: Running the command: "cactus_analyseAssembly HG02572.1.sanitized.fa"
2023-07-05 13:44:45.639241: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/1045/acc6/tmpdivpgdiw/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p'" in 1.236 seconds and 51.9 Mi memory
2023-07-05 13:44:45.640209: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/c5f5/cc6e/tmpz5uv3rs1/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p'" in 1.2339 seconds and 51.9 Mi memory
2023-07-05 13:44:45.640460: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/97b0/6699/tmpc2y2lgbr/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p'" in 1.2085 seconds and 51.9 Mi memory
2023-07-05 13:44:45.641395: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/a66a/f11b/tmpj5yi68e4/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p'" in 1.2063 seconds and 51.9 Mi memory
2023-07-05 13:44:45.642400: Running the command: "cactus_analyseAssembly HG01361.1.sanitized.fa"
2023-07-05 13:44:45.642662: Running the command: "cactus_analyseAssembly HG01071.1.sanitized.fa"
2023-07-05 13:44:45.643639: Running the command: "cactus_analyseAssembly HG02717.1.sanitized.fa"
2023-07-05 13:44:45.643795: Running the command: "cactus_analyseAssembly HG00621.2.sanitized.fa"
2023-07-05 13:44:45.644564: Running the command: "cactus_analyseAssembly HG03516.1.sanitized.fa"
Got message from job at time 07-05-2023 13:44:45: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 12 Total-length: 134567629 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34653749 Median-sequence-length: 6648894 Max-sequence-length: 40459255 Min-sequence-length: 139750

2023-07-05 13:44:45.646068: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/7b67/19eb/tmpxdgnod2k/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p'" in 1.2211 seconds and 51.9 Mi memory
2023-07-05 13:44:45.647629: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/6dcf/2973/tmpxprhe945/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p'" in 1.227 seconds and 51.8 Mi memory
2023-07-05 13:44:45.648631: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/879b/d2c6/tmp_6_1gj26/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p'" in 1.2506 seconds and 51.9 Mi memory
2023-07-05 13:44:45.649011: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/8cdb/328b/tmpb6ayabw3/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p'" in 1.2445 seconds and 53.7 Mi memory
2023-07-05 13:44:45.649226: Running the command: "cactus_analyseAssembly HG03486.2.sanitized.fa"
2023-07-05 13:44:45.650941: Running the command: "cactus_analyseAssembly HG01175.1.sanitized.fa"
2023-07-05 13:44:45.651232: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/5314/109e/tmpm5b889w3/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p'" in 1.251 seconds and 51.9 Mi memory
2023-07-05 13:44:45.651941: Running the command: "cactus_analyseAssembly HG00735.1.sanitized.fa"
2023-07-05 13:44:45.651938: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/da22/dfaa/tmp_l96uash/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p'" in 1.1993 seconds and 21.2 Mi memory
2023-07-05 13:44:45.652219: Running the command: "cactus_analyseAssembly HG01358.2.sanitized.fa"
2023-07-05 13:44:45.654202: Running the command: "cactus_analyseAssembly HG01106.2.sanitized.fa"
2023-07-05 13:44:45.654931: Running the command: "cactus_analyseAssembly HG02055.1.sanitized.fa"
Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 6 Total-length: 135077280 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40966673 Median-sequence-length: 31096040 Max-sequence-length: 62929048 Min-sequence-length: 18326

2023-07-05 13:44:45.658178: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/d53f/e80b/tmpc4240v1a/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p'" in 1.2599 seconds and 53.7 Mi memory
2023-07-05 13:44:45.658797: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/5bd0/0c63/tmpaijqka5c/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p'" in 1.2202 seconds and 51.9 Mi memory
2023-07-05 13:44:45.658874: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/62ec/0c0b/tmprtwfu61u/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p'" in 1.2568 seconds and 53.7 Mi memory
2023-07-05 13:44:45.659360: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/a09f/d79f/tmpprthzgy4/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p'" in 1.2094 seconds and 51.9 Mi memory
2023-07-05 13:44:45.661150: Running the command: "cactus_analyseAssembly HG02559.1.sanitized.fa"
2023-07-05 13:44:45.661325: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/e94e/ec67/tmpaz7d1bcc/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p'" in 1.214 seconds and 53.7 Mi memory
2023-07-05 13:44:45.662019: Running the command: "cactus_analyseAssembly HG02257.2.sanitized.fa"
2023-07-05 13:44:45.662239: Running the command: "cactus_analyseAssembly HG01123.2.sanitized.fa"
2023-07-05 13:44:45.662524: Running the command: "cactus_analyseAssembly NA20129.1.sanitized.fa"
2023-07-05 13:44:45.664430: Running the command: "cactus_analyseAssembly HG02257.1.sanitized.fa"
2023-07-05 13:44:45.665027: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/be20/c196/tmppen9082i/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p'" in 1.2132 seconds and 51.8 Mi memory
2023-07-05 13:44:45.666265: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/03e2/8a74/tmp_dmgnxek/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p'" in 1.218 seconds and 53.6 Mi memory
2023-07-05 13:44:45.668007: Running the command: "cactus_analyseAssembly HG01952.1.sanitized.fa"
2023-07-05 13:44:45.669100: Running the command: "cactus_analyseAssembly HG02622.1.sanitized.fa"
Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 7 Total-length: 134266539 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40175785 Median-sequence-length: 4664153 Max-sequence-length: 57825261 Min-sequence-length: 40251

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG02622.1: Input-sample: HG02622.1.sanitized.fa Total-sequences: 7 Total-length: 134465833 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 99875115 Median-sequence-length: 1592698 Max-sequence-length: 99875115 Min-sequence-length: 20603

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 8 Total-length: 134391151 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31821127 Median-sequence-length: 8330612 Max-sequence-length: 57180166 Min-sequence-length: 59983

2023-07-05 13:44:45.719069: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/4564/16eb/tmppm4n6jb7/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 1.2731 seconds and 153.9 Mi memory
2023-07-05 13:44:45.722084: Running the command: "cactus_analyseAssembly GRCh38.sanitized.fa"
Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 7 Total-length: 136546939 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 122867566 Median-sequence-length: 143538 Max-sequence-length: 122867566 Min-sequence-length: 17206

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 9 Total-length: 138836527 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43659983 Median-sequence-length: 2944703 Max-sequence-length: 48642835 Min-sequence-length: 492518

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 9 Total-length: 134253852 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 79240070 Median-sequence-length: 4214788 Max-sequence-length: 79240070 Min-sequence-length: 38945

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 11 Total-length: 133534202 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37898538 Median-sequence-length: 7196149 Max-sequence-length: 40780645 Min-sequence-length: 61251

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 5 Total-length: 134076828 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 88734667 Median-sequence-length: 8805687 Max-sequence-length: 88734667 Min-sequence-length: 46032

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 10 Total-length: 135230924 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40384143 Median-sequence-length: 8508629 Max-sequence-length: 42965451 Min-sequence-length: 25567

Got message from job at time 07-05-2023 13:44:45: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 7 Total-length: 134341725 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 103209325 Median-sequence-length: 1507554 Max-sequence-length: 103209325 Min-sequence-length: 17127

Got message from job at time 07-05-2023 13:44:46: Assembly stats for HG03453.1: Input-sample: HG03453.1.sanitized.fa Total-sequences: 10 Total-length: 133774725 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31648203 Median-sequence-length: 6653420 Max-sequence-length: 61966655 Min-sequence-length: 55513

2023-07-05 13:44:46.131291: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e3fe/bbcf/tmpdhn5deri/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p"
2023-07-05 13:44:46.131737: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/b7f2/49e0/tmp240iw688/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p"
2023-07-05 13:44:46.134255: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/75ed/a273/tmp5mdk_xd_/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p"
2023-07-05 13:44:46.156867: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/12eb/2825/tmpg62git8o/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p"
2023-07-05 13:44:46.159180: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/5f44/5141/tmpaka9yj38/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p"
2023-07-05 13:44:46.169823: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/158b/98dd/tmpcm1wexyb/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p"
2023-07-05 13:44:46.173942: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/f009/2fb8/tmpzvlcbmaq/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p"
2023-07-05 13:44:46.182621: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/6f61/a27c/tmpjbu97kvy/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p"
2023-07-05 13:44:46.189598: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/9aba/b721/tmpo4mifmq3/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p"
2023-07-05 13:44:46.193238: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/93f2/8322/tmprzqadpaj/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p"
2023-07-05 13:44:46.202728: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/4242/5ef7/tmpcc6vj2g4/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p"
2023-07-05 13:44:46.217010: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/6e8d/60be/tmplqcye024/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p"
2023-07-05 13:44:46.220692: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/6583/3a6d/tmpnsrskdoc/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-05 13:44:46.223555: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/65d4/2fa3/tmp87570pp2/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p"
2023-07-05 13:44:46.231581: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/affa/9087/tmprsp2t7mo/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p"
2023-07-05 13:44:46.236330: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/8542/a86a/tmp64d3jheh/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p"
2023-07-05 13:44:46.239887: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/4071/381e/tmplrtfpo85/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p"
2023-07-05 13:44:46.253269: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e50e/7ede/tmp7aowb9y9/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p"
2023-07-05 13:44:46.254416: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/d480/9239/tmplo6tg5jn/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p"
2023-07-05 13:44:46.260723: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/a72a/5cb0/tmp356934vs/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p"
2023-07-05 13:44:46.272737: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/74ab/a30a/tmpycmxv7ou/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p"
2023-07-05 13:44:46.279234: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/a2ee/4295/tmpfv8ho7k5/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p"
2023-07-05 13:44:46.280482: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/f2f6/74f0/tmp74p9l9n5/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p"
2023-07-05 13:44:46.305185: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/3c77/6dc0/tmpcuxia9wj/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p"
2023-07-05 13:44:46.308252: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/0a8b/fea4/tmpwiop7h2x/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p"
2023-07-05 13:44:46.311916: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/8667/f72c/tmpkww6k2l6/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p"
2023-07-05 13:44:46.315475: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/c1fb/136e/tmp5fizaj94/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-05 13:44:46.315665: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/d66c/fde7/tmp6qdhoy6b/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
2023-07-05 13:44:46.316869: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/31ca/eefc/tmp7eie4988/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p"
2023-07-05 13:44:46.321809: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/f60c/a7dc/tmpclachixp/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
2023-07-05 13:44:46.324593: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/a544/e28a/tmpni4jz9qc/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p"
2023-07-05 13:44:46.324998: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/964f/5b0a/tmp_7qtmts3/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
2023-07-05 13:44:46.326539: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/9d53/0739/tmpx2a04rlm/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p"
2023-07-05 13:44:46.328295: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/f233/c035/tmpxvtvgow6/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p"
2023-07-05 13:44:46.328786: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/4eb9/d8b6/tmpomo2qpgh/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p"
2023-07-05 13:44:46.332515: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/ef7a/a494/tmpapt2xaiw/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-05 13:44:46.333778: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/770e/e735/tmpwqo42rfq/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p"
Got message from job at time 07-05-2023 13:44:46: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 10 Total-length: 135145379 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24317609 Median-sequence-length: 8611141 Max-sequence-length: 31313642 Min-sequence-length: 473746

2023-07-05 13:44:46.335820: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7a6a/4bb4/tmpa00fsiz6/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-05 13:44:46.336795: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/a27e/1ae3/tmpzxdcqv7f/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p"
2023-07-05 13:44:46.336901: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7969/a023/tmpxp9m2_2_/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p"
2023-07-05 13:44:46.341459: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/0a39/8419/tmpipec588l/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p"
2023-07-05 13:44:46.342311: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/bbf8/a0b8/tmpv6iat1na/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p"
2023-07-05 13:44:46.342377: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/f968/f6a9/tmp8_slb8u_/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p"
2023-07-05 13:44:46.343510: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/52aa/5dd4/tmpkeebk9g3/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p"
2023-07-05 13:44:46.344265: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7640/e525/tmpjuffxqxo/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p"
2023-07-05 13:44:46.344793: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/84ea/6c95/tmp38bdhjje/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p"
2023-07-05 13:44:46.345918: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/2dc1/2001/tmpz4i59al4/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p"
2023-07-05 13:44:46.346090: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/6064/60ac/tmpmlhrzc4j/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-05 13:44:46.346155: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/01bf/2b15/tmpcfcerze9/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p"
2023-07-05 13:44:46.350513: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/f019/15a8/tmplda8omnu/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p"
2023-07-05 13:44:46.351092: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/a6b3/75d0/tmpxgcu_bq0/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
2023-07-05 13:44:46.352425: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/4b5c/fdd5/tmpi6fuq_1_/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p"
Got message from job at time 07-05-2023 13:44:46: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 5 Total-length: 136722430 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 93182100 Median-sequence-length: 8796383 Max-sequence-length: 93182100 Min-sequence-length: 53318

2023-07-05 13:44:46.357633: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/586c/1aca/tmpbthp4t4u/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p"
2023-07-05 13:44:46.358664: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/98ea/3055/tmpdieaun4k/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p"
2023-07-05 13:44:46.359180: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/d670/5331/tmpwmpqgo5f/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-05 13:44:46.359393: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/3503/8c83/tmps3dywqfz/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:44:46.369055: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/08e0/e975/tmp06dns_66/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p"
2023-07-05 13:44:46.369200: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e104/5112/tmp3q2gb4iq/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p"
2023-07-05 13:44:46.376047: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/aa2f/f441/tmpuecnocda/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p"
2023-07-05 13:44:46.390781: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 0.7908 seconds and 18.8 Mi memory
2023-07-05 13:44:46.396771: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/5520/d932/tmptgagk7kb/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p"
2023-07-05 13:44:46.402301: Successfully ran: "cactus_analyseAssembly HG02886.1.sanitized.fa" in 0.7876 seconds and 21.4 Mi memory
2023-07-05 13:44:46.402693: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 0.7854 seconds and 17.8 Mi memory
2023-07-05 13:44:46.408029: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 0.7944 seconds and 21.4 Mi memory
2023-07-05 13:44:46.408462: Successfully ran: "cactus_analyseAssembly HG03579.2.sanitized.fa" in 0.7849 seconds and 23.7 Mi memory
2023-07-05 13:44:46.409625: Successfully ran: "cactus_analyseAssembly HG02886.2.sanitized.fa" in 0.7837 seconds and 21.4 Mi memory
2023-07-05 13:44:46.411088: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 0.7809 seconds and 19.1 Mi memory
2023-07-05 13:44:46.413397: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 0.7808 seconds and 19.8 Mi memory
2023-07-05 13:44:46.413582: Successfully ran: "cactus_analyseAssembly HG03098.2.sanitized.fa" in 0.7816 seconds and 21.1 Mi memory
2023-07-05 13:44:46.418177: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 0.7881 seconds and 51.8 Mi memory
2023-07-05 13:44:46.418276: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 0.7785 seconds and 18.1 Mi memory
2023-07-05 13:44:46.419221: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 0.7793 seconds and 51.8 Mi memory
2023-07-05 13:44:46.423172: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 0.7787 seconds and 51.8 Mi memory
2023-07-05 13:44:46.423214: Successfully ran: "cactus_analyseAssembly HG01071.1.sanitized.fa" in 0.7799 seconds and 51.8 Mi memory
2023-07-05 13:44:46.423997: Successfully ran: "cactus_analyseAssembly HG02717.1.sanitized.fa" in 0.7795 seconds and 51.8 Mi memory
2023-07-05 13:44:46.426035: Successfully ran: "cactus_analyseAssembly HG01361.1.sanitized.fa" in 0.7828 seconds and 51.8 Mi memory
2023-07-05 13:44:46.426778: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 0.7815 seconds and 51.8 Mi memory
2023-07-05 13:44:46.428487: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 0.7769 seconds and 51.8 Mi memory
2023-07-05 13:44:46.429717: Successfully ran: "cactus_analyseAssembly HG01358.2.sanitized.fa" in 0.7769 seconds and 53.6 Mi memory
2023-07-05 13:44:46.431007: Successfully ran: "cactus_analyseAssembly HG02055.1.sanitized.fa" in 0.7754 seconds and 21.1 Mi memory
2023-07-05 13:44:46.431007: Successfully ran: "cactus_analyseAssembly HG03486.2.sanitized.fa" in 0.781 seconds and 51.8 Mi memory
2023-07-05 13:44:46.431325: Successfully ran: "cactus_analyseAssembly HG00735.1.sanitized.fa" in 0.7787 seconds and 51.8 Mi memory
2023-07-05 13:44:46.433883: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 0.779 seconds and 51.8 Mi memory
2023-07-05 13:44:46.436752: Successfully ran: "cactus_analyseAssembly HG02257.2.sanitized.fa" in 0.774 seconds and 51.8 Mi memory
2023-07-05 13:44:46.438093: Successfully ran: "cactus_analyseAssembly NA20129.1.sanitized.fa" in 0.7749 seconds and 51.8 Mi memory
2023-07-05 13:44:46.438128: Successfully ran: "cactus_analyseAssembly HG02559.1.sanitized.fa" in 0.7763 seconds and 53.6 Mi memory
2023-07-05 13:44:46.439745: Successfully ran: "cactus_analyseAssembly HG02622.1.sanitized.fa" in 0.77 seconds and 53.6 Mi memory
2023-07-05 13:44:46.440460: Successfully ran: "cactus_analyseAssembly HG01123.2.sanitized.fa" in 0.7775 seconds and 53.6 Mi memory
2023-07-05 13:44:46.444623: Successfully ran: "cactus_analyseAssembly HG01952.1.sanitized.fa" in 0.776 seconds and 51.8 Mi memory
2023-07-05 13:44:46.446317: Successfully ran: "cactus_analyseAssembly HG02257.1.sanitized.fa" in 0.7813 seconds and 53.6 Mi memory
2023-07-05 13:44:46.494919: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 0.7721 seconds and 153.9 Mi memory
2023-07-05 13:44:47.555063: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e3fe/bbcf/tmpdhn5deri/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p'" in 1.422 seconds and 20.5 Mi memory
2023-07-05 13:44:47.556871: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/75ed/a273/tmp5mdk_xd_/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p'" in 1.421 seconds and 22.8 Mi memory
2023-07-05 13:44:47.559500: Running the command: "cactus_analyseAssembly HG00673.2.sanitized.fa"
2023-07-05 13:44:47.561266: Running the command: "cactus_analyseAssembly NA20129.2.sanitized.fa"
2023-07-05 13:44:47.567436: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/b7f2/49e0/tmp240iw688/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p'" in 1.4341 seconds and 51.9 Mi memory
2023-07-05 13:44:47.571541: Running the command: "cactus_analyseAssembly HG01891.2.sanitized.fa"
2023-07-05 13:44:47.591649: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/12eb/2825/tmpg62git8o/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p'" in 1.4331 seconds and 18.9 Mi memory
2023-07-05 13:44:47.596009: Running the command: "cactus_analyseAssembly HG02055.2.sanitized.fa"
2023-07-05 13:44:47.596679: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/5f44/5141/tmpaka9yj38/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p'" in 1.4363 seconds and 51.9 Mi memory
2023-07-05 13:44:47.600824: Running the command: "cactus_analyseAssembly HG02148.1.sanitized.fa"
2023-07-05 13:44:47.600802: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/158b/98dd/tmpcm1wexyb/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p'" in 1.4296 seconds and 51.9 Mi memory
2023-07-05 13:44:47.604871: Running the command: "cactus_analyseAssembly HG03453.2.sanitized.fa"
2023-07-05 13:44:47.636384: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/9f2f/7043/tmpbpgjif38/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p"
2023-07-05 13:44:47.648301: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/4242/5ef7/tmpcc6vj2g4/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p'" in 1.4439 seconds and 51.9 Mi memory
2023-07-05 13:44:47.648848: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/f009/2fb8/tmpzvlcbmaq/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p'" in 1.4732 seconds and 51.9 Mi memory
2023-07-05 13:44:47.648896: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/6f61/a27c/tmpjbu97kvy/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p'" in 1.4649 seconds and 51.9 Mi memory
2023-07-05 13:44:47.652770: Running the command: "cactus_analyseAssembly HG02486.1.sanitized.fa"
2023-07-05 13:44:47.653267: Running the command: "cactus_analyseAssembly HG00741.1.sanitized.fa"
2023-07-05 13:44:47.653305: Running the command: "cactus_analyseAssembly HG03540.2.sanitized.fa"
2023-07-05 13:44:47.658222: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/8542/a86a/tmp64d3jheh/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p'" in 1.4203 seconds and 18.9 Mi memory
2023-07-05 13:44:47.663028: Running the command: "cactus_analyseAssembly HG01243.1.sanitized.fa"
2023-07-05 13:44:47.667125: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/93f2/8322/tmprzqadpaj/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p'" in 1.4722 seconds and 51.9 Mi memory
2023-07-05 13:44:47.668026: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/9aba/b721/tmpo4mifmq3/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p'" in 1.477 seconds and 51.9 Mi memory
2023-07-05 13:44:47.671549: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/65d4/2fa3/tmp87570pp2/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p'" in 1.4464 seconds and 51.9 Mi memory
2023-07-05 13:44:47.671651: Running the command: "cactus_analyseAssembly HG01928.1.sanitized.fa"
2023-07-05 13:44:47.672505: Running the command: "cactus_analyseAssembly HG00673.1.sanitized.fa"
2023-07-05 13:44:47.672890: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e50e/7ede/tmp7aowb9y9/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p'" in 1.4182 seconds and 22.0 Mi memory
2023-07-05 13:44:47.675913: Running the command: "cactus_analyseAssembly HG03098.1.sanitized.fa"
2023-07-05 13:44:47.677294: Running the command: "cactus_analyseAssembly HG01361.2.sanitized.fa"
2023-07-05 13:44:47.677835: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/46ce/5034/tmpn5p58stp/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p"
2023-07-05 13:44:47.678020: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7e55/7730/tmpwruqq4z4/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p"
2023-07-05 13:44:47.682765: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/6e8d/60be/tmplqcye024/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 1.4641 seconds and 51.9 Mi memory
2023-07-05 13:44:47.687022: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-05 13:44:47.688373: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/d480/9239/tmplo6tg5jn/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p'" in 1.4324 seconds and 53.7 Mi memory
2023-07-05 13:44:47.692466: Running the command: "cactus_analyseAssembly HG01258.2.sanitized.fa"
2023-07-05 13:44:47.692290: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/64a4/f150/tmp7wset5e8/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p"
2023-07-05 13:44:47.695697: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/4071/381e/tmplrtfpo85/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p'" in 1.4545 seconds and 51.9 Mi memory
2023-07-05 13:44:47.698391: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/6583/3a6d/tmpnsrskdoc/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p'" in 1.4763 seconds and 51.9 Mi memory
2023-07-05 13:44:47.700146: Running the command: "cactus_analyseAssembly HG01928.2.sanitized.fa"
2023-07-05 13:44:47.703022: Running the command: "cactus_analyseAssembly HG00735.2.sanitized.fa"
2023-07-05 13:44:47.703235: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/1bcc/e1ea/tmpjqbnx0pj/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p"
2023-07-05 13:44:47.710319: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/74ab/a30a/tmpycmxv7ou/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p'" in 1.436 seconds and 51.9 Mi memory
2023-07-05 13:44:47.714487: Running the command: "cactus_analyseAssembly HG02148.2.sanitized.fa"
2023-07-05 13:44:47.714513: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/a72a/5cb0/tmp356934vs/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p'" in 1.4524 seconds and 51.9 Mi memory
2023-07-05 13:44:47.718741: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/affa/9087/tmprsp2t7mo/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p'" in 1.4858 seconds and 51.9 Mi memory
2023-07-05 13:44:47.718932: Running the command: "cactus_analyseAssembly HG02622.2.sanitized.fa"
2023-07-05 13:44:47.720627: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/0a8b/fea4/tmpwiop7h2x/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 1.4111 seconds and 19.2 Mi memory
2023-07-05 13:44:47.723349: Running the command: "cactus_analyseAssembly HG02486.2.sanitized.fa"
2023-07-05 13:44:47.725215: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
2023-07-05 13:44:47.731714: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/a2ee/4295/tmpfv8ho7k5/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p'" in 1.4509 seconds and 51.9 Mi memory
2023-07-05 13:44:47.733807: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/4eb9/d8b6/tmpomo2qpgh/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p'" in 1.4037 seconds and 21.7 Mi memory
2023-07-05 13:44:47.735947: Running the command: "cactus_analyseAssembly HG01106.1.sanitized.fa"
2023-07-05 13:44:47.738185: Running the command: "cactus_analyseAssembly HG03540.1.sanitized.fa"
2023-07-05 13:44:47.738633: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/8667/f72c/tmpkww6k2l6/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p'" in 1.4251 seconds and 17.9 Mi memory
2023-07-05 13:44:47.739343: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/db7f/ce43/tmp5broph6f/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p"
2023-07-05 13:44:47.741186: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/f60c/a7dc/tmpclachixp/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p'" in 1.4181 seconds and 23.8 Mi memory
2023-07-05 13:44:47.743312: Running the command: "cactus_analyseAssembly HG03492.2.sanitized.fa"
2023-07-05 13:44:47.745556: Running the command: "cactus_analyseAssembly HG03486.1.sanitized.fa"
2023-07-05 13:44:47.745829: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/f2f6/74f0/tmp74p9l9n5/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p'" in 1.464 seconds and 53.7 Mi memory
2023-07-05 13:44:47.746833: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/1373/e398/tmpzhh66af_/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p"
2023-07-05 13:44:47.750168: Running the command: "cactus_analyseAssembly HG01978.2.sanitized.fa"
2023-07-05 13:44:47.753404: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/c088/9fd1/tmpesymc7ny/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p"
2023-07-05 13:44:47.753622: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/f5c4/ebca/tmp5orobnga/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p"
2023-07-05 13:44:47.757450: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/0daa/d0c7/tmpwmgv47gv/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p"
2023-07-05 13:44:47.759166: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/770e/e735/tmpwqo42rfq/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p'" in 1.4241 seconds and 17.8 Mi memory
2023-07-05 13:44:47.761332: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/f019/15a8/tmplda8omnu/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p'" in 1.4093 seconds and 22.8 Mi memory
2023-07-05 13:44:47.761829: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/64bf/08c7/tmphf44z_q0/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p"
2023-07-05 13:44:47.761940: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/21b3/ca03/tmpuz7qz6s6/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p"
2023-07-05 13:44:47.762266: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/551d/46d7/tmp4b2jft1g/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-05 13:44:47.763971: Running the command: "cactus_analyseAssembly NA21309.2.sanitized.fa"
2023-07-05 13:44:47.765920: Running the command: "cactus_analyseAssembly HG02145.2.sanitized.fa"
2023-07-05 13:44:47.766981: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/51e0/0c50/tmpdk2ny3lc/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p"
2023-07-05 13:44:47.767897: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/d66c/fde7/tmp6qdhoy6b/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p'" in 1.4505 seconds and 51.9 Mi memory
2023-07-05 13:44:47.769937: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/a507/709e/tmp2gin4v3w/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p"
2023-07-05 13:44:47.772520: Running the command: "cactus_analyseAssembly HG00438.2.sanitized.fa"
2023-07-05 13:44:47.773118: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/cc84/973a/tmph4mw8r91/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
2023-07-05 13:44:47.774394: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/09f6/079f/tmp39ghodi9/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p"
2023-07-05 13:44:47.776430: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/28f1/925c/tmpmccr3m42/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p"
2023-07-05 13:44:47.780475: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/f233/c035/tmpxvtvgow6/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p'" in 1.4506 seconds and 51.9 Mi memory
2023-07-05 13:44:47.784258: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/0f00/7fd4/tmp4i7dyuxr/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p"
2023-07-05 13:44:47.785963: Running the command: "cactus_analyseAssembly HG00438.1.sanitized.fa"
2023-07-05 13:44:47.787837: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/9d53/0739/tmpx2a04rlm/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p'" in 1.4597 seconds and 17.9 Mi memory
2023-07-05 13:44:47.789720: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/bbf8/a0b8/tmpv6iat1na/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p'" in 1.4459 seconds and 22.0 Mi memory
2023-07-05 13:44:47.790982: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/31ca/eefc/tmp7eie4988/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p'" in 1.4725 seconds and 18.1 Mi memory
2023-07-05 13:44:47.791637: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/2339/d428/tmpa5uo4_p3/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p"
2023-07-05 13:44:47.792729: Running the command: "cactus_analyseAssembly HG02818.1.sanitized.fa"
2023-07-05 13:44:47.794283: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/6064/60ac/tmpmlhrzc4j/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p'" in 1.4467 seconds and 51.9 Mi memory
2023-07-05 13:44:47.794567: Running the command: "cactus_analyseAssembly HG01123.1.sanitized.fa"
2023-07-05 13:44:47.795880: Running the command: "cactus_analyseAssembly HG03453.1.sanitized.fa"
2023-07-05 13:44:47.798907: Running the command: "cactus_analyseAssembly HG01175.2.sanitized.fa"
2023-07-05 13:44:47.800460: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/98ea/3055/tmpdieaun4k/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p'" in 1.4404 seconds and 18.1 Mi memory
2023-07-05 13:44:47.801018: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/3503/8c83/tmps3dywqfz/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p'" in 1.4403 seconds and 26.4 Mi memory
2023-07-05 13:44:47.801491: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/c1fb/136e/tmp5fizaj94/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p'" in 1.4842 seconds and 51.9 Mi memory
2023-07-05 13:44:47.804436: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/52aa/5dd4/tmpkeebk9g3/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p'" in 1.4594 seconds and 17.9 Mi memory
2023-07-05 13:44:47.805436: Running the command: "cactus_analyseAssembly NA21309.1.sanitized.fa"
2023-07-05 13:44:47.805866: Running the command: "cactus_analyseAssembly HG02145.1.sanitized.fa"
2023-07-05 13:44:47.806254: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/586c/1aca/tmpbthp4t4u/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p'" in 1.4472 seconds and 51.9 Mi memory
2023-07-05 13:44:47.806614: Running the command: "cactus_analyseAssembly HG03516.2.sanitized.fa"
2023-07-05 13:44:47.806751: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/3c77/6dc0/tmpcuxia9wj/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p'" in 1.4999 seconds and 51.9 Mi memory
2023-07-05 13:44:47.809416: Running the command: "cactus_analyseAssembly HG02080.1.sanitized.fa"
2023-07-05 13:44:47.810933: Running the command: "cactus_analyseAssembly HG02109.1.sanitized.fa"
2023-07-05 13:44:47.811186: Running the command: "cactus_analyseAssembly HG01978.1.sanitized.fa"
2023-07-05 13:44:47.813268: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7a6a/4bb4/tmpa00fsiz6/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p'" in 1.4761 seconds and 51.9 Mi memory
2023-07-05 13:44:47.817132: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7969/a023/tmpxp9m2_2_/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p'" in 1.4788 seconds and 53.7 Mi memory
2023-07-05 13:44:47.817777: Running the command: "cactus_analyseAssembly HG00621.1.sanitized.fa"
2023-07-05 13:44:47.818991: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/2dc1/2001/tmpz4i59al4/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p'" in 1.4717 seconds and 51.9 Mi memory
2023-07-05 13:44:47.819896: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/ef7a/a494/tmpapt2xaiw/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p'" in 1.486 seconds and 51.8 Mi memory
2023-07-05 13:44:47.822017: Running the command: "cactus_analyseAssembly HG01952.2.sanitized.fa"
2023-07-05 13:44:47.824120: Running the command: "cactus_analyseAssembly HG01071.2.sanitized.fa"
2023-07-05 13:44:47.824770: Running the command: "cactus_analyseAssembly HG01258.1.sanitized.fa"
2023-07-05 13:44:47.825927: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7640/e525/tmpjuffxqxo/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p'" in 1.4802 seconds and 23.8 Mi memory
2023-07-05 13:44:47.830801: Running the command: "cactus_analyseAssembly HG03579.1.sanitized.fa"
2023-07-05 13:44:47.831027: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/4b5c/fdd5/tmpi6fuq_1_/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p'" in 1.477 seconds and 51.9 Mi memory
2023-07-05 13:44:47.833226: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e104/5112/tmp3q2gb4iq/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p'" in 1.4625 seconds and 51.9 Mi memory
2023-07-05 13:44:47.836140: Running the command: "cactus_analyseAssembly HG02717.2.sanitized.fa"
2023-07-05 13:44:47.837056: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/0a39/8419/tmpipec588l/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p'" in 1.4943 seconds and 51.9 Mi memory
2023-07-05 13:44:47.837362: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/01bf/2b15/tmpcfcerze9/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p'" in 1.4898 seconds and 51.9 Mi memory
2023-07-05 13:44:47.838017: Running the command: "cactus_analyseAssembly NA18906.2.sanitized.fa"
2023-07-05 13:44:47.841588: Running the command: "cactus_analyseAssembly HG02559.2.sanitized.fa"
2023-07-05 13:44:47.842076: Running the command: "cactus_analyseAssembly HG01243.2.sanitized.fa"
2023-07-05 13:44:47.844414: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/a27e/1ae3/tmpzxdcqv7f/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p'" in 1.5062 seconds and 17.9 Mi memory
2023-07-05 13:44:47.849112: Running the command: "cactus_analyseAssembly HG02818.2.sanitized.fa"
2023-07-05 13:44:47.855870: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/f968/f6a9/tmp8_slb8u_/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p'" in 1.5121 seconds and 51.9 Mi memory
2023-07-05 13:44:47.855853: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/08e0/e975/tmp06dns_66/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p'" in 1.4852 seconds and 51.9 Mi memory
2023-07-05 13:44:47.859415: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/a544/e28a/tmpni4jz9qc/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p'" in 1.5332 seconds and 51.9 Mi memory
2023-07-05 13:44:47.860494: Running the command: "cactus_analyseAssembly HG01358.1.sanitized.fa"
2023-07-05 13:44:47.860515: Running the command: "cactus_analyseAssembly HG00741.2.sanitized.fa"
2023-07-05 13:44:47.862964: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/d670/5331/tmpwmpqgo5f/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p'" in 1.5024 seconds and 51.9 Mi memory
2023-07-05 13:44:47.863974: Running the command: "cactus_analyseAssembly HG01891.1.sanitized.fa"
2023-07-05 13:44:47.867237: Running the command: "cactus_analyseAssembly HG00733.1.sanitized.fa"
2023-07-05 13:44:47.869103: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/84ea/6c95/tmp38bdhjje/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p'" in 1.523 seconds and 51.9 Mi memory
2023-07-05 13:44:47.873591: Running the command: "cactus_analyseAssembly HG02630.1.sanitized.fa"
2023-07-05 13:44:47.884114: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/964f/5b0a/tmp_7qtmts3/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p'" in 1.5575 seconds and 7.0 Mi memory
2023-07-05 13:44:47.888895: Running the command: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa"
2023-07-05 13:44:47.915346: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/5520/d932/tmptgagk7kb/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p'" in 1.5169 seconds and 17.9 Mi memory
2023-07-05 13:44:47.920295: Running the command: "cactus_analyseAssembly HG02572.2.sanitized.fa"
2023-07-05 13:44:48.191779: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/a6b3/75d0/tmpxgcu_bq0/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p'" in 1.8378 seconds and 153.9 Mi memory
2023-07-05 13:44:48.196564: Running the command: "cactus_analyseAssembly CHM13.sanitized.fa"
2023-07-05 13:44:48.245487: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 0.683 seconds and 22.7 Mi memory
2023-07-05 13:44:48.246411: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 0.6857 seconds and 20.4 Mi memory
2023-07-05 13:44:48.278480: Successfully ran: "cactus_analyseAssembly HG01891.2.sanitized.fa" in 0.7056 seconds and 51.9 Mi memory
2023-07-05 13:44:48.290310: Successfully ran: "cactus_analyseAssembly HG02055.2.sanitized.fa" in 0.6931 seconds and 18.9 Mi memory
2023-07-05 13:44:48.293627: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/aa2f/f441/tmpuecnocda/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p'" in 1.914 seconds and 51.9 Mi memory
2023-07-05 13:44:48.298371: Running the command: "cactus_analyseAssembly NA18906.1.sanitized.fa"
2023-07-05 13:44:48.303559: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 0.6978 seconds and 51.9 Mi memory
2023-07-05 13:44:48.309830: Successfully ran: "cactus_analyseAssembly HG02148.1.sanitized.fa" in 0.7079 seconds and 51.9 Mi memory
2023-07-05 13:44:48.346243: Successfully ran: "cactus_analyseAssembly HG01243.1.sanitized.fa" in 0.6818 seconds and 18.9 Mi memory
2023-07-05 13:44:48.360066: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 0.6816 seconds and 22.0 Mi memory
2023-07-05 13:44:48.365551: Successfully ran: "cactus_analyseAssembly HG02486.1.sanitized.fa" in 0.7116 seconds and 51.9 Mi memory
2023-07-05 13:44:48.376194: Successfully ran: "cactus_analyseAssembly HG03540.2.sanitized.fa" in 0.7218 seconds and 51.9 Mi memory
2023-07-05 13:44:48.379250: Successfully ran: "cactus_analyseAssembly HG00741.1.sanitized.fa" in 0.7248 seconds and 51.9 Mi memory
2023-07-05 13:44:48.390082: Successfully ran: "cactus_analyseAssembly HG03098.1.sanitized.fa" in 0.7129 seconds and 51.9 Mi memory
2023-07-05 13:44:48.392238: Successfully ran: "cactus_analyseAssembly HG02080.2.sanitized.fa" in 0.6659 seconds and 19.1 Mi memory
2023-07-05 13:44:48.395875: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 0.7022 seconds and 53.7 Mi memory
2023-07-05 13:44:48.397809: Successfully ran: "cactus_analyseAssembly HG01928.1.sanitized.fa" in 0.725 seconds and 51.9 Mi memory
2023-07-05 13:44:48.400961: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 0.7273 seconds and 51.9 Mi memory
2023-07-05 13:44:48.402370: Successfully ran: "cactus_analyseAssembly HG03540.1.sanitized.fa" in 0.6631 seconds and 21.4 Mi memory
2023-07-05 13:44:48.403170: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 0.6875 seconds and 51.9 Mi memory
2023-07-05 13:44:48.409843: Successfully ran: "cactus_analyseAssembly HG03492.2.sanitized.fa" in 0.6654 seconds and 17.8 Mi memory
2023-07-05 13:44:48.414389: Successfully ran: "cactus_analyseAssembly HG02723.1.sanitized.fa" in 0.7262 seconds and 51.9 Mi memory
2023-07-05 13:44:48.415514: Successfully ran: "cactus_analyseAssembly HG03486.1.sanitized.fa" in 0.6689 seconds and 23.8 Mi memory
2023-07-05 13:44:48.485462: Successfully ran: "cactus_analyseAssembly HG02109.1.sanitized.fa" in 0.6735 seconds and 51.9 Mi memory
2023-07-05 13:44:48.491243: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 0.6834 seconds and 51.9 Mi memory
2023-07-05 13:44:48.497678: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 0.6788 seconds and 51.9 Mi memory
2023-07-05 13:44:48.498426: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 0.6481 seconds and 17.8 Mi memory
2023-07-05 13:44:48.647578: Successfully ran: "cactus_analyseAssembly HG01928.2.sanitized.fa" in 0.9463 seconds and 51.9 Mi memory
2023-07-05 13:44:48.844188: Successfully ran: "cactus_analyseAssembly CHM13.sanitized.fa" in 0.6463 seconds and 153.9 Mi memory
2023-07-05 13:44:48.875439: Successfully ran: "cactus_analyseAssembly NA18906.1.sanitized.fa" in 0.5757 seconds and 51.9 Mi memory
2023-07-05 13:44:49.049195: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/8b5c/8b35/tmpyd5l30_5/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p"
2023-07-05 13:44:49.086875: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/2fe2/5583/tmpckno8e3y/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p"
2023-07-05 13:44:49.089940: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/6308/f138/tmpjfw6j0jy/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p"
2023-07-05 13:44:49.097431: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/152b/3f7e/tmpuurkz444/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
2023-07-05 13:44:49.098685: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/14ae/78da/tmpvrik526h/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p"
2023-07-05 13:44:49.101973: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/b97a/190c/tmpjw9iu8ii/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p"
2023-07-05 13:44:49.104776: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/d188/c168/tmpexgllqqx/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p"
2023-07-05 13:44:49.108374: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/ad65/d82f/tmp7hi_038s/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p"
2023-07-05 13:44:49.111329: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/559f/c149/tmp4bg1rkkc/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p"
2023-07-05 13:44:49.121997: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/6cc9/90fb/tmpt109zocm/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-05 13:44:49.123485: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/5cb3/0f73/tmplt7mhls6/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-05 13:44:49.124802: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/a207/6c20/tmpvtfp7nqr/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p"
2023-07-05 13:44:49.129979: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/0c34/205d/tmpewytkebl/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p"
2023-07-05 13:44:49.135787: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/b160/3280/tmpp6nutl63/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p"
2023-07-05 13:44:49.145352: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/3a20/1a9c/tmp7wph0q7f/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-05 13:44:49.148028: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/cc28/5786/tmpc1ga52yk/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p"
2023-07-05 13:44:49.193929: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/f9fd/82e8/tmp61jbt7gv/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p"
2023-07-05 13:44:49.194001: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/8159/87b7/tmpv364rtzj/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p"
2023-07-05 13:44:49.196790: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/947d/d3e8/tmp8g7a1j7y/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-05 13:44:49.197007: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/52bf/42d0/tmpotz6gi0v/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p"
2023-07-05 13:44:49.911530: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7e55/7730/tmpwruqq4z4/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p'" in 2.2318 seconds and 51.9 Mi memory
2023-07-05 13:44:49.917731: Running the command: "cactus_analyseAssembly HG02257.1.sanitized.fa"
2023-07-05 13:44:49.947585: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/1bcc/e1ea/tmpjqbnx0pj/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p'" in 2.2427 seconds and 51.9 Mi memory
2023-07-05 13:44:49.953687: Running the command: "cactus_analyseAssembly HG01123.1.sanitized.fa"
2023-07-05 13:44:49.955735: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/64a4/f150/tmp7wset5e8/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p'" in 2.2618 seconds and 51.9 Mi memory
2023-07-05 13:44:49.961558: Running the command: "cactus_analyseAssembly HG02055.2.sanitized.fa"
2023-07-05 13:44:49.975970: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/1373/e398/tmpzhh66af_/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p'" in 2.2277 seconds and 62.0 Mi memory
2023-07-05 13:44:49.981726: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/21b3/ca03/tmpuz7qz6s6/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p'" in 2.2184 seconds and 17.9 Mi memory
2023-07-05 13:44:49.982283: Running the command: "cactus_analyseAssembly HG02257.2.sanitized.fa"
2023-07-05 13:44:49.988114: Running the command: "cactus_analyseAssembly HG03486.2.sanitized.fa"
2023-07-05 13:44:49.993754: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/f5c4/ebca/tmp5orobnga/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p'" in 2.2387 seconds and 51.9 Mi memory
2023-07-05 13:44:49.998531: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/db7f/ce43/tmp5broph6f/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p'" in 2.2576 seconds and 21.5 Mi memory
2023-07-05 13:44:50.000093: Running the command: "cactus_analyseAssembly HG01891.1.sanitized.fa"
2023-07-05 13:44:50.000260: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/0daa/d0c7/tmpwmgv47gv/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p'" in 2.2413 seconds and 19.4 Mi memory
2023-07-05 13:44:50.005169: Running the command: "cactus_analyseAssembly HG03453.1.sanitized.fa"
2023-07-05 13:44:50.005579: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/cc84/973a/tmph4mw8r91/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p'" in 2.2312 seconds and 51.9 Mi memory
2023-07-05 13:44:50.006627: Running the command: "cactus_analyseAssembly HG02080.1.sanitized.fa"
2023-07-05 13:44:50.006823: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/28f1/925c/tmpmccr3m42/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p'" in 2.2292 seconds and 58.9 Mi memory
2023-07-05 13:44:50.007318: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/51e0/0c50/tmpdk2ny3lc/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p'" in 2.2389 seconds and 51.9 Mi memory
2023-07-05 13:44:50.009756: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/551d/46d7/tmp4b2jft1g/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p'" in 2.2462 seconds and 51.9 Mi memory
2023-07-05 13:44:50.010634: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/64bf/08c7/tmphf44z_q0/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 2.2475 seconds and 19.2 Mi memory
2023-07-05 13:44:50.010667: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/a507/709e/tmp2gin4v3w/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p'" in 2.2395 seconds and 51.9 Mi memory
2023-07-05 13:44:50.012124: Running the command: "cactus_analyseAssembly HG00438.2.sanitized.fa"
2023-07-05 13:44:50.012977: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/c088/9fd1/tmpesymc7ny/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p'" in 2.258 seconds and 20.7 Mi memory
2023-07-05 13:44:50.013606: Running the command: "cactus_analyseAssembly HG00438.1.sanitized.fa"
2023-07-05 13:44:50.014038: Running the command: "cactus_analyseAssembly HG02559.1.sanitized.fa"
2023-07-05 13:44:50.016368: Running the command: "cactus_analyseAssembly HG01106.2.sanitized.fa"
2023-07-05 13:44:50.017089: Running the command: "cactus_analyseAssembly HG03516.1.sanitized.fa"
2023-07-05 13:44:50.017287: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
2023-07-05 13:44:50.019514: Running the command: "cactus_analyseAssembly HG03492.2.sanitized.fa"
2023-07-05 13:44:50.075949: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/0f00/7fd4/tmp4i7dyuxr/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p'" in 2.2904 seconds and 51.9 Mi memory
2023-07-05 13:44:50.082011: Running the command: "cactus_analyseAssembly HG02622.2.sanitized.fa"
2023-07-05 13:44:50.091419: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/9f2f/7043/tmpbpgjif38/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p'" in 2.4533 seconds and 17.9 Mi memory
2023-07-05 13:44:50.098053: Running the command: "cactus_analyseAssembly NA21309.1.sanitized.fa"
2023-07-05 13:44:50.138667: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/2339/d428/tmpa5uo4_p3/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p'" in 2.3456 seconds and 23.8 Mi memory
2023-07-05 13:44:50.144914: Running the command: "cactus_analyseAssembly HG02886.2.sanitized.fa"
2023-07-05 13:44:50.159138: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/46ce/5034/tmpn5p58stp/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p'" in 2.4798 seconds and 17.9 Mi memory
2023-07-05 13:44:50.165126: Running the command: "cactus_analyseAssembly NA20129.2.sanitized.fa"
2023-07-05 13:44:50.214522: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/09f6/079f/tmp39ghodi9/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p'" in 2.4384 seconds and 51.9 Mi memory
2023-07-05 13:44:50.220871: Running the command: "cactus_analyseAssembly HG01071.1.sanitized.fa"
2023-07-05 13:44:51.082405: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/3a20/1a9c/tmp7wph0q7f/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p'" in 1.9356 seconds and 64.3 Mi memory
2023-07-05 13:44:51.093601: Running the command: "cactus_analyseAssembly HG01106.2.sanitized.fa"
2023-07-05 13:44:51.094974: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/b160/3280/tmpp6nutl63/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p'" in 1.9579 seconds and 51.9 Mi memory
2023-07-05 13:44:51.105213: Running the command: "cactus_analyseAssembly HG01109.2.sanitized.fa"
2023-07-05 13:44:51.125258: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/8b5c/8b35/tmpyd5l30_5/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p'" in 2.0746 seconds and 51.9 Mi memory
2023-07-05 13:44:51.134507: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/909c/2ad7/tmpfqbpo_44/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p'" in 1.9486 seconds and 51.9 Mi memory
2023-07-05 13:44:51.135137: Running the command: "cactus_analyseAssembly HG02109.1.sanitized.fa"
2023-07-05 13:44:51.142855: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/2fe2/5583/tmpckno8e3y/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p'" in 2.0546 seconds and 70.7 Mi memory
2023-07-05 13:44:51.144015: Running the command: "cactus_analyseAssembly HG03492.1.sanitized.fa"
2023-07-05 13:44:51.150120: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/a207/6c20/tmpvtfp7nqr/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p'" in 2.0239 seconds and 73.3 Mi memory
2023-07-05 13:44:51.151098: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/f270/fe36/tmpzelscw4a/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p'" in 1.9747 seconds and 51.9 Mi memory
2023-07-05 13:44:51.152990: Running the command: "cactus_analyseAssembly HG01123.1.sanitized.fa"
2023-07-05 13:44:51.157194: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/152b/3f7e/tmpuurkz444/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p'" in 2.0585 seconds and 154.0 Mi memory
2023-07-05 13:44:51.159781: Running the command: "cactus_analyseAssembly HG02055.1.sanitized.fa"
2023-07-05 13:44:51.161420: Running the command: "cactus_analyseAssembly HG02630.2.sanitized.fa"
2023-07-05 13:44:51.164973: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/2023/d33d/tmpz29280kb/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p'" in 1.9854 seconds and 153.9 Mi memory
2023-07-05 13:44:51.167320: Running the command: "cactus_analyseAssembly HG01123.2.sanitized.fa"
2023-07-05 13:44:51.168586: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/6868/28a9/tmpnkjd8gp7/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p'" in 2.0071 seconds and 154.0 Mi memory
2023-07-05 13:44:51.169047: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/6cc9/90fb/tmpt109zocm/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p'" in 2.046 seconds and 154.0 Mi memory
2023-07-05 13:44:51.175473: Running the command: "cactus_analyseAssembly HG01258.2.sanitized.fa"
2023-07-05 13:44:51.178746: Running the command: "cactus_analyseAssembly HG01891.1.sanitized.fa"
2023-07-05 13:44:51.179368: Running the command: "cactus_analyseAssembly HG01258.1.sanitized.fa"
2023-07-05 13:44:51.185782: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/4aab/b6d1/tmpch3zq4fw/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p'" in 1.9951 seconds and 51.9 Mi memory
2023-07-05 13:44:51.188747: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/ad65/d82f/tmp7hi_038s/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p'" in 2.0789 seconds and 73.1 Mi memory
2023-07-05 13:44:51.194195: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/a701/0d01/tmpt3n3wbyx/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p'" in 2.01 seconds and 154.0 Mi memory
2023-07-05 13:44:51.195621: Running the command: "cactus_analyseAssembly HG02145.2.sanitized.fa"
2023-07-05 13:44:51.195687: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/aeb7/82cd/tmp6mxvqdwv/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p'" in 2.0043 seconds and 52.4 Mi memory
2023-07-05 13:44:51.197121: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/1f16/3355/tmpc6ct8bo3/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p'" in 2.0054 seconds and 55.5 Mi memory
2023-07-05 13:44:51.198742: Running the command: "cactus_analyseAssembly HG02080.1.sanitized.fa"
2023-07-05 13:44:51.202360: Successfully ran: "cactus_analyseAssembly HG02257.1.sanitized.fa" in 1.2836 seconds and 51.9 Mi memory
2023-07-05 13:44:51.204092: Running the command: "cactus_analyseAssembly HG03516.1.sanitized.fa"
2023-07-05 13:44:51.205352: Running the command: "cactus_analyseAssembly HG03453.1.sanitized.fa"
2023-07-05 13:44:51.206803: Running the command: "cactus_analyseAssembly HG03098.1.sanitized.fa"
2023-07-05 13:44:51.208283: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/ae56/9d1c/tmpeeegj0ow/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p'" in 2.0385 seconds and 58.6 Mi memory
2023-07-05 13:44:51.210235: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/1fee/d977/tmpvolejc1n/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p'" in 2.0309 seconds and 51.9 Mi memory
2023-07-05 13:44:51.212745: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/3d98/c8e4/tmp5ba03q1m/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p'" in 2.0442 seconds and 51.9 Mi memory
2023-07-05 13:44:51.217441: Running the command: "cactus_analyseAssembly HG02572.2.sanitized.fa"
2023-07-05 13:44:51.219615: Running the command: "cactus_analyseAssembly HG02886.2.sanitized.fa"
2023-07-05 13:44:51.222222: Running the command: "cactus_analyseAssembly HG03579.1.sanitized.fa"
2023-07-05 13:44:51.233721: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/bf21/a679/tmp5di68_wo/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p'" in 2.0409 seconds and 154.0 Mi memory
2023-07-05 13:44:51.242226: Successfully ran: "cactus_analyseAssembly HG01123.1.sanitized.fa" in 1.2875 seconds and 51.9 Mi memory
2023-07-05 13:44:51.242569: Running the command: "cactus_analyseAssembly HG01361.1.sanitized.fa"
2023-07-05 13:44:51.246785: Successfully ran: "cactus_analyseAssembly HG03486.2.sanitized.fa" in 1.2575 seconds and 17.8 Mi memory
2023-07-05 13:44:51.247162: Successfully ran: "cactus_analyseAssembly HG02055.2.sanitized.fa" in 1.2846 seconds and 51.9 Mi memory
2023-07-05 13:44:51.266619: Successfully ran: "cactus_analyseAssembly HG02257.2.sanitized.fa" in 1.2832 seconds and 61.9 Mi memory
2023-07-05 13:44:51.274102: Successfully ran: "cactus_analyseAssembly HG03453.1.sanitized.fa" in 1.2679 seconds and 21.4 Mi memory
2023-07-05 13:44:51.276145: Successfully ran: "cactus_analyseAssembly HG02080.1.sanitized.fa" in 1.2685 seconds and 19.4 Mi memory
2023-07-05 13:44:51.277460: Successfully ran: "cactus_analyseAssembly HG02080.2.sanitized.fa" in 1.2593 seconds and 19.1 Mi memory
2023-07-05 13:44:51.277460: Successfully ran: "cactus_analyseAssembly HG03492.2.sanitized.fa" in 1.2571 seconds and 20.7 Mi memory
2023-07-05 13:44:51.289506: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/0c34/205d/tmpewytkebl/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p'" in 2.1583 seconds and 51.9 Mi memory
2023-07-05 13:44:51.290919: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 1.2728 seconds and 51.9 Mi memory
2023-07-05 13:44:51.292909: Successfully ran: "cactus_analyseAssembly HG00438.2.sanitized.fa" in 1.2799 seconds and 51.8 Mi memory
2023-07-05 13:44:51.293515: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/14ae/78da/tmpvrik526h/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p'" in 2.1933 seconds and 54.2 Mi memory
2023-07-05 13:44:51.297378: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 1.2802 seconds and 51.9 Mi memory
2023-07-05 13:44:51.298460: Successfully ran: "cactus_analyseAssembly HG02559.1.sanitized.fa" in 1.2835 seconds and 51.9 Mi memory
2023-07-05 13:44:51.299069: Running the command: "cactus_analyseAssembly NA21309.1.sanitized.fa"
2023-07-05 13:44:51.299829: Successfully ran: "cactus_analyseAssembly HG00438.1.sanitized.fa" in 1.2854 seconds and 58.8 Mi memory
2023-07-05 13:44:51.302431: Running the command: "cactus_analyseAssembly NA18906.2.sanitized.fa"
2023-07-05 13:44:51.306476: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/4543/03cd/tmp9cgj5_8u/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p'" in 2.1235 seconds and 51.9 Mi memory
2023-07-05 13:44:51.316286: Running the command: "cactus_analyseAssembly HG02630.1.sanitized.fa"
2023-07-05 13:44:51.318903: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/5cb3/0f73/tmplt7mhls6/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p'" in 2.1938 seconds and 69.2 Mi memory
2023-07-05 13:44:51.321087: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/e7dd/9a03/tmp4kmatlbl/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p'" in 2.1422 seconds and 51.9 Mi memory
2023-07-05 13:44:51.327758: Running the command: "cactus_analyseAssembly HG00733.1.sanitized.fa"
2023-07-05 13:44:51.330297: Running the command: "cactus_analyseAssembly HG03492.2.sanitized.fa"
2023-07-05 13:44:51.335163: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/de61/89d3/tmpbkpn0npz/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p'" in 2.151 seconds and 51.9 Mi memory
2023-07-05 13:44:51.342152: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/7830/b41e/tmprcsod3o8/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 2.1432 seconds and 51.9 Mi memory
2023-07-05 13:44:51.345494: Running the command: "cactus_analyseAssembly HG03453.2.sanitized.fa"
2023-07-05 13:44:51.350833: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/559f/c149/tmp4bg1rkkc/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p'" in 2.2381 seconds and 154.0 Mi memory
2023-07-05 13:44:51.351349: Successfully ran: "cactus_analyseAssembly NA21309.1.sanitized.fa" in 1.2522 seconds and 17.8 Mi memory
2023-07-05 13:44:51.351731: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
2023-07-05 13:44:51.354592: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/9974/11b1/tmp0yjviczg/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p'" in 2.163 seconds and 51.9 Mi memory
2023-07-05 13:44:51.355688: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/1e1b/56de/tmphsf8nafn/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p'" in 2.1977 seconds and 51.9 Mi memory
2023-07-05 13:44:51.355990: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/6308/f138/tmpjfw6j0jy/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p'" in 2.2646 seconds and 153.9 Mi memory
2023-07-05 13:44:51.360439: Running the command: "cactus_analyseAssembly HG02055.2.sanitized.fa"
2023-07-05 13:44:51.361816: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/565f/1bc9/tmp0abpqrj0/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p'" in 2.1688 seconds and 51.9 Mi memory
2023-07-05 13:44:51.362100: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/d188/c168/tmpexgllqqx/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p'" in 2.2559 seconds and 154.0 Mi memory
2023-07-05 13:44:51.364705: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/99fd/a99e/tmplqvguott/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p'" in 2.1819 seconds and 51.9 Mi memory
2023-07-05 13:44:51.364831: Running the command: "cactus_analyseAssembly HG02818.2.sanitized.fa"
2023-07-05 13:44:51.365234: Running the command: "cactus_analyseAssembly HG01243.1.sanitized.fa"
2023-07-05 13:44:51.365358: Running the command: "cactus_analyseAssembly HG01358.2.sanitized.fa"
2023-07-05 13:44:51.368031: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/bff6/4b5f/tmp8c3id4_7/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p'" in 2.187 seconds and 53.7 Mi memory
2023-07-05 13:44:51.371080: Running the command: "cactus_analyseAssembly HG02723.2.sanitized.fa"
2023-07-05 13:44:51.371658: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/cc28/5786/tmpc1ga52yk/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p'" in 2.2225 seconds and 153.9 Mi memory
2023-07-05 13:44:51.372207: Running the command: "cactus_analyseAssembly HG02622.1.sanitized.fa"
2023-07-05 13:44:51.374455: Running the command: "cactus_analyseAssembly HG00673.2.sanitized.fa"
2023-07-05 13:44:51.378096: Running the command: "cactus_analyseAssembly HG02717.2.sanitized.fa"
2023-07-05 13:44:51.379452: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/d66b/73a8/tmpumn9ketx/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p'" in 2.2162 seconds and 154.0 Mi memory
2023-07-05 13:44:51.380506: Running the command: "cactus_analyseAssembly HG02257.2.sanitized.fa"
2023-07-05 13:44:51.388703: Running the command: "cactus_analyseAssembly HG03516.2.sanitized.fa"
2023-07-05 13:44:51.393337: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/3bfe/5a67/tmp_ofhe2um/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p'" in 2.229 seconds and 154.0 Mi memory
2023-07-05 13:44:51.402510: Running the command: "cactus_analyseAssembly HG01928.1.sanitized.fa"
2023-07-05 13:44:51.404995: Successfully ran: "cactus_analyseAssembly HG02622.2.sanitized.fa" in 1.322 seconds and 51.9 Mi memory
2023-07-05 13:44:51.407604: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/499d/913e/tmpppfe1p7c/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p'" in 2.2132 seconds and 51.9 Mi memory
2023-07-05 13:44:51.411679: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/8dd5/3f96/tmp58hfb8k5/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p'" in 2.2288 seconds and 51.9 Mi memory
2023-07-05 13:44:51.416611: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/947d/d3e8/tmp8g7a1j7y/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p'" in 2.2182 seconds and 154.0 Mi memory
2023-07-05 13:44:51.416871: Running the command: "cactus_analyseAssembly HG00673.1.sanitized.fa"
2023-07-05 13:44:51.420451: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/98f2/3087/tmpnp7f5evx/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p'" in 2.2359 seconds and 154.0 Mi memory
2023-07-05 13:44:51.420912: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/4f15/2393/tmpy3rhyd3k/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p'" in 2.2402 seconds and 153.9 Mi memory
2023-07-05 13:44:51.421181: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 1.255 seconds and 17.8 Mi memory
2023-07-05 13:44:51.426386: Running the command: "cactus_analyseAssembly HG00735.2.sanitized.fa"
2023-07-05 13:44:51.428419: Running the command: "cactus_analyseAssembly HG02572.1.sanitized.fa"
2023-07-05 13:44:51.428831: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/b97a/190c/tmpjw9iu8ii/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p'" in 2.3254 seconds and 51.9 Mi memory
2023-07-05 13:44:51.429492: Running the command: "cactus_analyseAssembly HG00621.2.sanitized.fa"
2023-07-05 13:44:51.430747: Running the command: "cactus_analyseAssembly HG01928.2.sanitized.fa"
2023-07-05 13:44:51.431719: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/8159/87b7/tmpv364rtzj/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p'" in 2.2365 seconds and 154.0 Mi memory
2023-07-05 13:44:51.438503: Running the command: "cactus_analyseAssembly NA21309.2.sanitized.fa"
2023-07-05 13:44:51.439272: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/7b05/f662/tmp8rueranf/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p'" in 2.248 seconds and 192.8 Mi memory
2023-07-05 13:44:51.440765: Running the command: "cactus_analyseAssembly HG01071.2.sanitized.fa"
2023-07-05 13:44:51.444324: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/c7c7/3440/tmpbekhners/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p'" in 2.2636 seconds and 56.0 Mi memory
2023-07-05 13:44:51.447435: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/936c/60f1/tmpktv6srts/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p'" in 2.2586 seconds and 154.0 Mi memory
2023-07-05 13:44:51.453226: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/52bf/42d0/tmpotz6gi0v/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p'" in 2.2545 seconds and 153.9 Mi memory
2023-07-05 13:44:51.454178: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/f9fd/82e8/tmp61jbt7gv/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p'" in 2.2591 seconds and 153.9 Mi memory
2023-07-05 13:44:51.454619: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
2023-07-05 13:44:51.454787: Successfully ran: "cactus_analyseAssembly HG02886.2.sanitized.fa" in 1.3089 seconds and 23.8 Mi memory
2023-07-05 13:44:51.455486: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/c0e9/6fa3/tmpdmjt8irl/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p'" in 2.2712 seconds and 154.0 Mi memory
2023-07-05 13:44:51.455738: Running the command: "cactus_analyseAssembly CHM13.sanitized.fa"
2023-07-05 13:44:51.457928: Running the command: "cactus_analyseAssembly HG02486.2.sanitized.fa"
2023-07-05 13:44:51.458236: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/9f85/a6f2/tmpsnyrhpi_/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p'" in 2.2669 seconds and 154.0 Mi memory
2023-07-05 13:44:51.463849: Running the command: "cactus_analyseAssembly HG01358.1.sanitized.fa"
2023-07-05 13:44:51.464680: Running the command: "cactus_analyseAssembly HG00621.1.sanitized.fa"
2023-07-05 13:44:51.467258: Running the command: "cactus_analyseAssembly NA20129.2.sanitized.fa"
2023-07-05 13:44:51.470452: Running the command: "cactus_analyseAssembly HG01891.2.sanitized.fa"
2023-07-05 13:44:51.500467: Successfully ran: "cactus_analyseAssembly HG01071.1.sanitized.fa" in 1.2786 seconds and 51.9 Mi memory
2023-07-05 13:44:51.706028: Successfully ran: "cactus_analyseAssembly HG01891.1.sanitized.fa" in 1.7049 seconds and 51.9 Mi memory
2023-07-05 13:44:52.345676: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 1.2395 seconds and 51.9 Mi memory
2023-07-05 13:44:52.356328: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 1.2616 seconds and 64.2 Mi memory
2023-07-05 13:44:52.375977: Successfully ran: "cactus_analyseAssembly HG02109.1.sanitized.fa" in 1.2398 seconds and 51.9 Mi memory
2023-07-05 13:44:52.409135: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 1.2641 seconds and 51.9 Mi memory
2023-07-05 13:44:52.417474: Successfully ran: "cactus_analyseAssembly HG01123.1.sanitized.fa" in 1.2637 seconds and 70.7 Mi memory
2023-07-05 13:44:52.423767: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 1.2615 seconds and 51.9 Mi memory
2023-07-05 13:44:52.430038: Successfully ran: "cactus_analyseAssembly HG02055.1.sanitized.fa" in 1.2693 seconds and 73.3 Mi memory
2023-07-05 13:44:52.444341: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 1.2479 seconds and 51.9 Mi memory
2023-07-05 13:44:52.454751: Successfully ran: "cactus_analyseAssembly HG01123.2.sanitized.fa" in 1.2864 seconds and 153.9 Mi memory
2023-07-05 13:44:52.460929: Successfully ran: "cactus_analyseAssembly HG03453.1.sanitized.fa" in 1.2546 seconds and 52.1 Mi memory
2023-07-05 13:44:52.472099: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 1.2953 seconds and 153.9 Mi memory
2023-07-05 13:44:52.472920: Successfully ran: "cactus_analyseAssembly HG02080.1.sanitized.fa" in 1.2733 seconds and 73.0 Mi memory
2023-07-05 13:44:52.477420: Successfully ran: "cactus_analyseAssembly HG02886.2.sanitized.fa" in 1.2569 seconds and 51.9 Mi memory
2023-07-05 13:44:52.478080: Successfully ran: "cactus_analyseAssembly HG02572.2.sanitized.fa" in 1.2598 seconds and 58.6 Mi memory
2023-07-05 13:44:52.479206: Successfully ran: "cactus_analyseAssembly HG03579.1.sanitized.fa" in 1.2561 seconds and 51.9 Mi memory
2023-07-05 13:44:52.493633: Successfully ran: "cactus_analyseAssembly HG01258.1.sanitized.fa" in 1.3133 seconds and 153.9 Mi memory
2023-07-05 13:44:52.512126: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 1.3068 seconds and 153.9 Mi memory
2023-07-05 13:44:52.512960: Successfully ran: "cactus_analyseAssembly HG01891.1.sanitized.fa" in 1.3331 seconds and 153.9 Mi memory
2023-07-05 13:44:52.559802: Successfully ran: "cactus_analyseAssembly HG01361.1.sanitized.fa" in 1.3163 seconds and 153.9 Mi memory
2023-07-05 13:44:52.641441: Successfully ran: "cactus_analyseAssembly NA21309.1.sanitized.fa" in 1.3413 seconds and 51.9 Mi memory
2023-07-05 13:44:52.657080: Successfully ran: "cactus_analyseAssembly NA18906.2.sanitized.fa" in 1.3536 seconds and 54.2 Mi memory
2023-07-05 13:44:52.664933: Successfully ran: "cactus_analyseAssembly HG02630.1.sanitized.fa" in 1.3473 seconds and 51.9 Mi memory
2023-07-05 13:44:52.689992: Successfully ran: "cactus_analyseAssembly HG03492.2.sanitized.fa" in 1.3586 seconds and 51.9 Mi memory
2023-07-05 13:44:52.699986: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 1.3535 seconds and 51.9 Mi memory
2023-07-05 13:44:52.702438: Successfully ran: "cactus_analyseAssembly HG00733.1.sanitized.fa" in 1.3737 seconds and 69.1 Mi memory
2023-07-05 13:44:52.713066: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 1.3473 seconds and 51.9 Mi memory
2023-07-05 13:44:52.719495: Successfully ran: "cactus_analyseAssembly HG01243.1.sanitized.fa" in 1.3533 seconds and 51.9 Mi memory
2023-07-05 13:44:52.719514: Successfully ran: "cactus_analyseAssembly HG02080.2.sanitized.fa" in 1.3668 seconds and 51.9 Mi memory
2023-07-05 13:44:52.735397: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 1.3636 seconds and 51.9 Mi memory
2023-07-05 13:44:52.736480: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 1.3607 seconds and 51.9 Mi memory
2023-07-05 13:44:52.740884: Successfully ran: "cactus_analyseAssembly HG02717.2.sanitized.fa" in 1.3617 seconds and 53.7 Mi memory
2023-07-05 13:44:52.756824: Successfully ran: "cactus_analyseAssembly HG01358.2.sanitized.fa" in 1.3905 seconds and 153.9 Mi memory
2023-07-05 13:44:52.773263: Successfully ran: "cactus_analyseAssembly NA21309.2.sanitized.fa" in 1.3339 seconds and 51.9 Mi memory
2023-07-05 13:44:52.778204: Successfully ran: "cactus_analyseAssembly HG02622.1.sanitized.fa" in 1.4049 seconds and 153.9 Mi memory
2023-07-05 13:44:52.779735: Successfully ran: "cactus_analyseAssembly HG02257.2.sanitized.fa" in 1.3986 seconds and 153.9 Mi memory
2023-07-05 13:44:52.780044: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 1.3622 seconds and 51.9 Mi memory
2023-07-05 13:44:52.781962: Successfully ran: "cactus_analyseAssembly HG02055.2.sanitized.fa" in 1.4204 seconds and 153.9 Mi memory
2023-07-05 13:44:52.783643: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 1.3541 seconds and 51.9 Mi memory
2023-07-05 13:44:52.786405: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 1.3967 seconds and 153.9 Mi memory
2023-07-05 13:44:52.805969: Successfully ran: "cactus_analyseAssembly HG01928.1.sanitized.fa" in 1.4026 seconds and 153.9 Mi memory
2023-07-05 13:44:52.823514: Successfully ran: "cactus_analyseAssembly HG03098.2.sanitized.fa" in 1.368 seconds and 56.0 Mi memory
2023-07-05 13:44:52.836753: Successfully ran: "cactus_analyseAssembly HG01928.2.sanitized.fa" in 1.4049 seconds and 153.9 Mi memory
2023-07-05 13:44:52.839941: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 1.4092 seconds and 153.9 Mi memory
2023-07-05 13:44:52.840664: Successfully ran: "cactus_analyseAssembly HG00735.2.sanitized.fa" in 1.4134 seconds and 153.9 Mi memory
2023-07-05 13:44:52.850627: Successfully ran: "cactus_analyseAssembly HG01071.2.sanitized.fa" in 1.4089 seconds and 153.9 Mi memory
2023-07-05 13:44:52.863821: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 1.3957 seconds and 153.9 Mi memory
2023-07-05 13:44:52.864590: Successfully ran: "cactus_analyseAssembly HG02486.2.sanitized.fa" in 1.4058 seconds and 153.9 Mi memory
2023-07-05 13:44:52.868857: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 1.4032 seconds and 153.9 Mi memory
2023-07-05 13:44:52.883634: Successfully ran: "cactus_analyseAssembly HG01358.1.sanitized.fa" in 1.4187 seconds and 153.9 Mi memory
2023-07-05 13:44:52.898998: Successfully ran: "cactus_analyseAssembly CHM13.sanitized.fa" in 1.4421 seconds and 192.9 Mi memory
2023-07-05 13:44:52.900397: Successfully ran: "cactus_analyseAssembly HG01891.2.sanitized.fa" in 1.4289 seconds and 153.9 Mi memory
2023-07-05 13:44:52.935700: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/8fff/7b4e/tmpwoar8k0l/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p"
2023-07-05 13:44:52.938025: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/ea2a/7c23/tmp6bczqilz/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p"
2023-07-05 13:44:52.938968: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/674f/5c5a/tmpc1pq8sxo/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p"
2023-07-05 13:44:52.939783: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/32a8/1294/tmp08di862u/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p"
2023-07-05 13:44:52.940457: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/e43e/409e/tmpf6y34_b0/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p"
2023-07-05 13:44:52.942142: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/22d7/a681/tmpt0kpqy_e/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p"
2023-07-05 13:44:52.942167: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/56b0/a2fa/tmpudn20wvy/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p"
2023-07-05 13:44:52.946091: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/5f6f/616d/tmpnh8c4r0i/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-05 13:44:52.946356: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/288b/0a19/tmpyt370agr/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:44:52.946706: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/65ea/5425/tmp_8qb2zhi/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-05 13:44:52.947975: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/c261/9528/tmpx0e115bl/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p"
2023-07-05 13:44:52.948446: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/6160/a75f/tmpcmp2wk6r/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p"
2023-07-05 13:44:52.951293: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/f468/e866/tmpdg4brx1p/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p"
2023-07-05 13:44:52.955562: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/e9fc/685f/tmp3726n5pj/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
2023-07-05 13:44:52.958404: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/50d3/a1c2/tmpa5dlbh_w/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p"
2023-07-05 13:44:52.958716: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/2fdc/d2da/tmpl2zjzcfq/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p"
2023-07-05 13:44:52.960504: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/fe50/fbc0/tmpyx8q6y6c/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p"
2023-07-05 13:44:52.960631: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/ec13/4911/tmp84k8c9tb/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p"
2023-07-05 13:44:52.961477: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/c682/a967/tmpx83n_e0f/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p"
2023-07-05 13:44:52.961745: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/6969/e621/tmp7sf91qrr/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p"
2023-07-05 13:44:52.961808: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/2f11/9007/tmpw1n85eoh/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p"
2023-07-05 13:44:53.219061: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/5eb9/d7ac/tmpuddm7ucx/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p"
2023-07-05 13:44:53.221616: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/5676/3633/tmp8uck425f/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p"
2023-07-05 13:44:53.227031: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/077f/2444/tmpwyrpcdnq/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p"
2023-07-05 13:44:53.227789: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/0969/8478/tmp3gbxa8j_/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p"
2023-07-05 13:44:53.228508: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/0b2c/6820/tmpw4rxu6fl/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p"
2023-07-05 13:44:53.232540: Successfully ran: "cactus_analyseAssembly HG03098.1.sanitized.fa" in 2.0247 seconds and 55.5 Mi memory
2023-07-05 13:44:53.474454: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/288b/0a19/tmpyt370agr/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p'" in 0.5269 seconds and 18.6 Mi memory
2023-07-05 13:44:53.477336: Running the command: "cactus_analyseAssembly HG02145.1.sanitized.fa"
2023-07-05 13:44:53.493031: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/50d3/a1c2/tmpa5dlbh_w/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p'" in 0.5334 seconds and 18.6 Mi memory
2023-07-05 13:44:53.495980: Running the command: "cactus_analyseAssembly HG01358.1.sanitized.fa"
2023-07-05 13:44:53.496596: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/c682/a967/tmpx83n_e0f/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p'" in 0.534 seconds and 25.4 Mi memory
2023-07-05 13:44:53.499446: Running the command: "cactus_analyseAssembly HG02886.2.sanitized.fa"
2023-07-05 13:44:53.505601: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/65ea/5425/tmp_8qb2zhi/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p'" in 0.5576 seconds and 23.2 Mi memory
2023-07-05 13:44:53.507759: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/6160/a75f/tmpcmp2wk6r/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p'" in 0.558 seconds and 51.9 Mi memory
2023-07-05 13:44:53.508431: Running the command: "cactus_analyseAssembly HG00733.1.sanitized.fa"
2023-07-05 13:44:53.509249: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/e9fc/685f/tmp3726n5pj/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p'" in 0.5525 seconds and 18.9 Mi memory
2023-07-05 13:44:53.510506: Running the command: "cactus_analyseAssembly HG00741.2.sanitized.fa"
2023-07-05 13:44:53.511836: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/674f/5c5a/tmpc1pq8sxo/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 0.5715 seconds and 51.9 Mi memory
2023-07-05 13:44:53.512140: Running the command: "cactus_analyseAssembly HG02717.1.sanitized.fa"
2023-07-05 13:44:53.513307: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/22d7/a681/tmpt0kpqy_e/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p'" in 0.5696 seconds and 23.6 Mi memory
2023-07-05 13:44:53.515004: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
2023-07-05 13:44:53.515689: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/32a8/1294/tmp08di862u/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p'" in 0.5747 seconds and 17.8 Mi memory
2023-07-05 13:44:53.516398: Running the command: "cactus_analyseAssembly NA20129.1.sanitized.fa"
2023-07-05 13:44:53.518442: Running the command: "cactus_analyseAssembly HG01071.1.sanitized.fa"
2023-07-05 13:44:53.518513: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/fe50/fbc0/tmpyx8q6y6c/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p'" in 0.5568 seconds and 51.9 Mi memory
2023-07-05 13:44:53.521098: Running the command: "cactus_analyseAssembly HG03453.1.sanitized.fa"
2023-07-05 13:44:53.522248: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/8fff/7b4e/tmpwoar8k0l/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p'" in 0.5853 seconds and 25.4 Mi memory
2023-07-05 13:44:53.523005: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/ec13/4911/tmp84k8c9tb/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p'" in 0.5613 seconds and 51.9 Mi memory
2023-07-05 13:44:53.525242: Running the command: "cactus_analyseAssembly HG03540.2.sanitized.fa"
2023-07-05 13:44:53.525817: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/56b0/a2fa/tmpudn20wvy/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p'" in 0.5822 seconds and 51.9 Mi memory
2023-07-05 13:44:53.525983: Running the command: "cactus_analyseAssembly HG03486.2.sanitized.fa"
2023-07-05 13:44:53.527479: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/6969/e621/tmp7sf91qrr/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p'" in 0.5645 seconds and 21.8 Mi memory
2023-07-05 13:44:53.528675: Running the command: "cactus_analyseAssembly NA18906.1.sanitized.fa"
2023-07-05 13:44:53.529789: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/c261/9528/tmpx0e115bl/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p'" in 0.5805 seconds and 51.9 Mi memory
2023-07-05 13:44:53.530119: Running the command: "cactus_analyseAssembly HG03516.1.sanitized.fa"
2023-07-05 13:44:53.532504: Running the command: "cactus_analyseAssembly HG01891.1.sanitized.fa"
2023-07-05 13:44:53.536727: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/f468/e866/tmpdg4brx1p/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p'" in 0.5843 seconds and 51.9 Mi memory
2023-07-05 13:44:53.539566: Running the command: "cactus_analyseAssembly NA18906.2.sanitized.fa"
2023-07-05 13:44:53.543850: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/ea2a/7c23/tmp6bczqilz/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p'" in 0.6046 seconds and 51.9 Mi memory
2023-07-05 13:44:53.546567: Running the command: "cactus_analyseAssembly HG02818.2.sanitized.fa"
2023-07-05 13:44:53.551186: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/5f6f/616d/tmpnh8c4r0i/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p'" in 0.6038 seconds and 51.9 Mi memory
2023-07-05 13:44:53.551458: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/e43e/409e/tmpf6y34_b0/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p'" in 0.61 seconds and 51.9 Mi memory
2023-07-05 13:44:53.554167: Running the command: "cactus_analyseAssembly HG03516.2.sanitized.fa"
2023-07-05 13:44:53.554402: Running the command: "cactus_analyseAssembly HG03492.2.sanitized.fa"
2023-07-05 13:44:53.556663: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/2f11/9007/tmpw1n85eoh/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p'" in 0.5935 seconds and 51.9 Mi memory
2023-07-05 13:44:53.559198: Running the command: "cactus_analyseAssembly HG02630.1.sanitized.fa"
2023-07-05 13:44:53.572021: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/2fdc/d2da/tmpl2zjzcfq/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p'" in 0.6121 seconds and 51.9 Mi memory
2023-07-05 13:44:53.574546: Running the command: "cactus_analyseAssembly HG01175.1.sanitized.fa"
2023-07-05 13:44:53.857336: Successfully ran: "cactus_analyseAssembly HG02145.1.sanitized.fa" in 0.3792 seconds and 18.6 Mi memory
2023-07-05 13:44:53.887173: Successfully ran: "cactus_analyseAssembly HG01358.1.sanitized.fa" in 0.3904 seconds and 18.6 Mi memory
2023-07-05 13:44:53.888214: Successfully ran: "cactus_analyseAssembly HG02886.2.sanitized.fa" in 0.388 seconds and 25.3 Mi memory
2023-07-05 13:44:53.903575: Successfully ran: "cactus_analyseAssembly HG00733.1.sanitized.fa" in 0.3943 seconds and 23.2 Mi memory
2023-07-05 13:44:53.904030: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 0.3732 seconds and 21.7 Mi memory
2023-07-05 13:44:53.906114: Successfully ran: "cactus_analyseAssembly NA20129.1.sanitized.fa" in 0.3889 seconds and 23.5 Mi memory
2023-07-05 13:44:53.907142: Successfully ran: "cactus_analyseAssembly HG01071.1.sanitized.fa" in 0.3879 seconds and 17.8 Mi memory
2023-07-05 13:44:53.907535: Successfully ran: "cactus_analyseAssembly HG02717.1.sanitized.fa" in 0.3946 seconds and 18.9 Mi memory
2023-07-05 13:44:53.913368: Successfully ran: "cactus_analyseAssembly HG03540.2.sanitized.fa" in 0.3874 seconds and 25.3 Mi memory
2023-07-05 13:44:53.915555: Successfully ran: "cactus_analyseAssembly HG00741.2.sanitized.fa" in 0.4043 seconds and 51.9 Mi memory
2023-07-05 13:44:53.926289: Successfully ran: "cactus_analyseAssembly HG02080.2.sanitized.fa" in 0.4105 seconds and 51.9 Mi memory
2023-07-05 13:44:53.930580: Successfully ran: "cactus_analyseAssembly HG03453.1.sanitized.fa" in 0.4086 seconds and 51.9 Mi memory
2023-07-05 13:44:53.939526: Successfully ran: "cactus_analyseAssembly HG01891.1.sanitized.fa" in 0.4062 seconds and 51.9 Mi memory
2023-07-05 13:44:53.940496: Successfully ran: "cactus_analyseAssembly HG03486.2.sanitized.fa" in 0.4137 seconds and 51.9 Mi memory
2023-07-05 13:44:53.941000: Successfully ran: "cactus_analyseAssembly NA18906.1.sanitized.fa" in 0.4116 seconds and 51.9 Mi memory
2023-07-05 13:44:53.941257: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 0.394 seconds and 51.9 Mi memory
2023-07-05 13:44:53.942446: Successfully ran: "cactus_analyseAssembly NA18906.2.sanitized.fa" in 0.4021 seconds and 51.9 Mi memory
2023-07-05 13:44:53.956543: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 0.4017 seconds and 51.9 Mi memory
2023-07-05 13:44:53.983627: Successfully ran: "cactus_analyseAssembly HG02630.1.sanitized.fa" in 0.4237 seconds and 51.9 Mi memory
2023-07-05 13:44:53.996026: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 0.4207 seconds and 51.9 Mi memory
2023-07-05 13:44:54.182908: Successfully ran: "cactus_analyseAssembly HG03492.2.sanitized.fa" in 0.6278 seconds and 51.9 Mi memory
2023-07-05 13:44:54.382574: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/5eb9/d7ac/tmpuddm7ucx/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p'" in 1.1624 seconds and 62.9 Mi memory
2023-07-05 13:44:54.388001: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/0b2c/6820/tmpw4rxu6fl/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p'" in 1.1582 seconds and 51.9 Mi memory
2023-07-05 13:44:54.388314: Running the command: "cactus_analyseAssembly HG01361.1.sanitized.fa"
2023-07-05 13:44:54.389461: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/5676/3633/tmp8uck425f/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p'" in 1.1668 seconds and 51.9 Mi memory
2023-07-05 13:44:54.394086: Running the command: "cactus_analyseAssembly HG02572.2.sanitized.fa"
2023-07-05 13:44:54.395668: Running the command: "cactus_analyseAssembly HG01175.1.sanitized.fa"
2023-07-05 13:44:54.413632: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/077f/2444/tmpwyrpcdnq/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p'" in 1.1856 seconds and 51.9 Mi memory
2023-07-05 13:44:54.419290: Running the command: "cactus_analyseAssembly NA21309.2.sanitized.fa"
2023-07-05 13:44:54.421094: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/0969/8478/tmp3gbxa8j_/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p'" in 1.192 seconds and 51.9 Mi memory
2023-07-05 13:44:54.427293: Running the command: "cactus_analyseAssembly HG02818.2.sanitized.fa"
2023-07-05 13:44:55.137705: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/b9b3/193d/tmp8ugrua7g/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p"
2023-07-05 13:44:55.141767: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/ff11/287a/tmp5cqobpln/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p"
2023-07-05 13:44:55.143469: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/9e71/d6d0/tmph7wtc0l_/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p"
2023-07-05 13:44:55.150400: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/6a30/eeb2/tmpl2yo4cg5/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p"
2023-07-05 13:44:55.154903: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/37a5/8b94/tmpm14eryq9/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p"
2023-07-05 13:44:55.157688: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/4b51/b90a/tmpxgyqa1qp/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p"
2023-07-05 13:44:55.163715: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/8200/49a1/tmp6ez43rlx/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-05 13:44:55.166081: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/3be9/baa8/tmpah0u9s_a/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-05 13:44:55.167529: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/fa1f/a45f/tmpfyxbyp8p/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
2023-07-05 13:44:55.167886: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/7548/67fa/tmpr5idrkm5/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p"
2023-07-05 13:44:55.167964: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/d978/aa9a/tmpk6627wjl/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p"
2023-07-05 13:44:55.169050: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/c26c/72ee/tmpn_bs0vxb/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:44:55.170725: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/4d51/3338/tmph9bs9mr9/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p"
2023-07-05 13:44:55.172394: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/2165/b77f/tmp68ygwqi4/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p"
2023-07-05 13:44:55.172529: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/50ac/fb9d/tmpt0jsiokk/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p"
2023-07-05 13:44:55.174089: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/e1c6/455f/tmphqjbbrt8/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p"
2023-07-05 13:44:55.174210: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/26e1/501c/tmp4ajthzi_/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p"
2023-07-05 13:44:55.176178: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/451d/41a3/tmppxy5_ctp/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p"
2023-07-05 13:44:55.176547: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/42a4/b73f/tmpl__oypss/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p"
2023-07-05 13:44:55.176899: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/3c46/a422/tmp99k1jgbo/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p"
2023-07-05 13:44:55.176957: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/99db/b0de/tmpvjp3fyso/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p"
2023-07-05 13:44:55.178100: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/862c/206d/tmp6a1045t_/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p"
2023-07-05 13:44:55.178255: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/36c9/5a63/tmpdps4yre0/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p"
2023-07-05 13:44:55.178494: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/5333/4741/tmpsd08ksho/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p"
2023-07-05 13:44:55.179963: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/7b5b/eb4e/tmpdg0w940h/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p"
2023-07-05 13:44:55.180114: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/15a5/bafa/tmpp8tsiq6b/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p"
2023-07-05 13:44:55.182213: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/6464/d421/tmptf4adyjf/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p"
2023-07-05 13:44:55.182476: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/e1fb/f20c/tmpa9vco6jy/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
2023-07-05 13:44:55.182423: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/480d/e097/tmpn0dtlnar/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
2023-07-05 13:44:55.182718: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/b9b6/7332/tmphmo00qkz/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p"
2023-07-05 13:44:55.183867: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/96c3/1a2b/tmpyb3roqg2/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p"
2023-07-05 13:44:55.184362: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/bf1f/0395/tmp2_a55ypy/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p"
2023-07-05 13:44:55.187296: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/f423/4e24/tmp5j8fkrjw/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-05 13:44:55.191886: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/15c1/11ca/tmpkxr_b1hj/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p"
Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 10 Total-length: 58036360 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 11893054 Median-sequence-length: 4424308 Max-sequence-length: 19728707 Min-sequence-length: 258603

Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 14 Total-length: 58831907 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 5451457 Median-sequence-length: 4677881 Max-sequence-length: 10176008 Min-sequence-length: 41133

2023-07-05 13:44:55.328424: Successfully ran: "cactus_analyseAssembly HG02572.2.sanitized.fa" in 0.9335 seconds and 51.8 Mi memory
2023-07-05 13:44:55.334220: Successfully ran: "cactus_analyseAssembly HG01361.1.sanitized.fa" in 0.9451 seconds and 62.9 Mi memory
Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 11 Total-length: 61611688 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31199222 Median-sequence-length: 1273015 Max-sequence-length: 31199222 Min-sequence-length: 22667

2023-07-05 13:44:55.377089: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 0.9807 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 28 Total-length: 58904816 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 4014723 Median-sequence-length: 1305086 Max-sequence-length: 11804834 Min-sequence-length: 257503

2023-07-05 13:44:55.405588: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 0.9775 seconds and 51.9 Mi memory
2023-07-05 13:44:55.406194: Successfully ran: "cactus_analyseAssembly NA21309.2.sanitized.fa" in 0.9861 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 16 Total-length: 61082453 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31402003 Median-sequence-length: 861868 Max-sequence-length: 31402003 Min-sequence-length: 37431

Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 6 Total-length: 60683434 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31831918 Median-sequence-length: 7250371 Max-sequence-length: 31831918 Min-sequence-length: 33887

Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 8 Total-length: 60890764 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35753028 Median-sequence-length: 2892597 Max-sequence-length: 35753028 Min-sequence-length: 1010062

Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 7 Total-length: 59963562 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22847911 Median-sequence-length: 2906808 Max-sequence-length: 25435770 Min-sequence-length: 146538

Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG02622.1: Input-sample: HG02622.1.sanitized.fa Total-sequences: 7 Total-length: 63112151 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51206351 Median-sequence-length: 1024710 Max-sequence-length: 51206351 Min-sequence-length: 23472

Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 7 Total-length: 61035199 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31151945 Median-sequence-length: 2855294 Max-sequence-length: 31151945 Min-sequence-length: 87354

Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 9 Total-length: 61079377 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14938717 Median-sequence-length: 4524161 Max-sequence-length: 18655738 Min-sequence-length: 175355

Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 12 Total-length: 61106503 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16795561 Median-sequence-length: 2916724 Max-sequence-length: 21003611 Min-sequence-length: 47124

Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 22 Total-length: 59646954 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14327237 Median-sequence-length: 892744 Max-sequence-length: 16700516 Min-sequence-length: 69296

Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 6 Total-length: 60846966 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41153266 Median-sequence-length: 5478928 Max-sequence-length: 41153266 Min-sequence-length: 803353

Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 24 Total-length: 60461482 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 4980131 Median-sequence-length: 1177014 Max-sequence-length: 13360902 Min-sequence-length: 102626

Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 9 Total-length: 59625436 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23403740 Median-sequence-length: 1334323 Max-sequence-length: 24445369 Min-sequence-length: 181231

Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 12 Total-length: 60480035 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14220458 Median-sequence-length: 2897669 Max-sequence-length: 23571898 Min-sequence-length: 185830

Got message from job at time 07-05-2023 13:44:55: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 61707364 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 61707364 Median-sequence-length: 61707364 Max-sequence-length: 61707364 Min-sequence-length: 61707364

Got message from job at time 07-05-2023 13:44:55: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 15 Total-length: 57668231 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 9701080 Median-sequence-length: 2251757 Max-sequence-length: 12033227 Min-sequence-length: 33949

Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 12 Total-length: 62649688 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14938278 Median-sequence-length: 2602808 Max-sequence-length: 28314952 Min-sequence-length: 28732

Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 5 Total-length: 62738306 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33284811 Median-sequence-length: 6031202 Max-sequence-length: 33284811 Min-sequence-length: 1015485

Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 10 Total-length: 59957798 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12985420 Median-sequence-length: 1310701 Max-sequence-length: 29254295 Min-sequence-length: 34646

Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 11 Total-length: 60773389 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39160616 Median-sequence-length: 2407508 Max-sequence-length: 39160616 Min-sequence-length: 427351

Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 10 Total-length: 61798213 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 49055132 Median-sequence-length: 1461164 Max-sequence-length: 49055132 Min-sequence-length: 25151

Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 11 Total-length: 62041460 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32181243 Median-sequence-length: 1307313 Max-sequence-length: 32181243 Min-sequence-length: 69801

Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 8 Total-length: 60772275 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30931599 Median-sequence-length: 2898259 Max-sequence-length: 30931599 Min-sequence-length: 245832

Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 6 Total-length: 60760439 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43723723 Median-sequence-length: 5508470 Max-sequence-length: 43723723 Min-sequence-length: 921726

Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 16 Total-length: 60875181 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 7527263 Median-sequence-length: 1806257 Max-sequence-length: 25570964 Min-sequence-length: 34446

Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 13 Total-length: 60987097 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 10779381 Median-sequence-length: 2900100 Max-sequence-length: 13522984 Min-sequence-length: 187100

Got message from job at time 07-05-2023 13:44:55: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 13 Total-length: 59746279 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 10364609 Median-sequence-length: 2040648 Max-sequence-length: 24397685 Min-sequence-length: 31077

2023-07-05 13:44:56.656985: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/50ac/fb9d/tmpt0jsiokk/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p'" in 1.483 seconds and 51.9 Mi memory
2023-07-05 13:44:56.663692: Running the command: "cactus_analyseAssembly HG00741.2.sanitized.fa"
2023-07-05 13:44:56.677307: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/e1c6/455f/tmphqjbbrt8/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p'" in 1.5021 seconds and 51.9 Mi memory
2023-07-05 13:44:56.684251: Running the command: "cactus_analyseAssembly HG02109.1.sanitized.fa"
2023-07-05 13:44:56.775694: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/b9b3/193d/tmp8ugrua7g/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p'" in 1.6365 seconds and 51.9 Mi memory
2023-07-05 13:44:56.783017: Running the command: "cactus_analyseAssembly HG03486.2.sanitized.fa"
2023-07-05 13:44:56.807673: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/6a30/eeb2/tmpl2yo4cg5/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p'" in 1.6557 seconds and 55.0 Mi memory
2023-07-05 13:44:56.815544: Running the command: "cactus_analyseAssembly NA18906.2.sanitized.fa"
2023-07-05 13:44:56.835949: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/4b51/b90a/tmpxgyqa1qp/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p'" in 1.6768 seconds and 51.9 Mi memory
2023-07-05 13:44:56.842821: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/96c3/1a2b/tmpyb3roqg2/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p'" in 1.6577 seconds and 51.9 Mi memory
2023-07-05 13:44:56.843051: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/bf1f/0395/tmp2_a55ypy/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p'" in 1.6574 seconds and 51.9 Mi memory
2023-07-05 13:44:56.843890: Running the command: "cactus_analyseAssembly NA20129.1.sanitized.fa"
2023-07-05 13:44:56.845753: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/99db/b0de/tmpvjp3fyso/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p'" in 1.6674 seconds and 54.0 Mi memory
2023-07-05 13:44:56.848109: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/2165/b77f/tmp68ygwqi4/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 1.6744 seconds and 51.9 Mi memory
2023-07-05 13:44:56.848826: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/3be9/baa8/tmpah0u9s_a/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p'" in 1.6813 seconds and 52.4 Mi memory
2023-07-05 13:44:56.850914: Running the command: "cactus_analyseAssembly HG02622.2.sanitized.fa"
2023-07-05 13:44:56.850892: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
2023-07-05 13:44:56.853300: Running the command: "cactus_analyseAssembly HG01928.2.sanitized.fa"
2023-07-05 13:44:56.854180: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/480d/e097/tmpn0dtlnar/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p'" in 1.67 seconds and 51.9 Mi memory
2023-07-05 13:44:56.854208: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/c26c/72ee/tmpn_bs0vxb/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p'" in 1.684 seconds and 51.9 Mi memory
2023-07-05 13:44:56.856339: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/37a5/8b94/tmpm14eryq9/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p'" in 1.7 seconds and 51.9 Mi memory
2023-07-05 13:44:56.856443: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
2023-07-05 13:44:56.856600: Running the command: "cactus_analyseAssembly HG01106.2.sanitized.fa"
2023-07-05 13:44:56.858659: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/3c46/a422/tmp99k1jgbo/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p'" in 1.6805 seconds and 71.5 Mi memory
2023-07-05 13:44:56.859876: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/36c9/5a63/tmpdps4yre0/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p'" in 1.6804 seconds and 71.5 Mi memory
2023-07-05 13:44:56.860854: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/26e1/501c/tmp4ajthzi_/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p'" in 1.6852 seconds and 54.8 Mi memory
2023-07-05 13:44:56.861933: Running the command: "cactus_analyseAssembly HG02145.1.sanitized.fa"
2023-07-05 13:44:56.862417: Running the command: "cactus_analyseAssembly HG02109.2.sanitized.fa"
2023-07-05 13:44:56.864356: Running the command: "cactus_analyseAssembly HG02630.2.sanitized.fa"
2023-07-05 13:44:56.864672: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/42a4/b73f/tmpl__oypss/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p'" in 1.6867 seconds and 53.7 Mi memory
2023-07-05 13:44:56.866539: Running the command: "cactus_analyseAssembly HG01071.2.sanitized.fa"
2023-07-05 13:44:56.867289: Running the command: "cactus_analyseAssembly HG01978.1.sanitized.fa"
2023-07-05 13:44:56.867585: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/d978/aa9a/tmpk6627wjl/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p'" in 1.6982 seconds and 51.9 Mi memory
2023-07-05 13:44:56.868077: Running the command: "cactus_analyseAssembly HG01106.1.sanitized.fa"
2023-07-05 13:44:56.871697: Running the command: "cactus_analyseAssembly HG03540.1.sanitized.fa"
2023-07-05 13:44:56.871760: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/4d51/3338/tmph9bs9mr9/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p'" in 1.6999 seconds and 56.0 Mi memory
2023-07-05 13:44:56.872894: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/6464/d421/tmptf4adyjf/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p'" in 1.6895 seconds and 53.5 Mi memory
2023-07-05 13:44:56.875580: Running the command: "cactus_analyseAssembly HG02080.1.sanitized.fa"
2023-07-05 13:44:56.878969: Running the command: "cactus_analyseAssembly HG03098.1.sanitized.fa"
2023-07-05 13:44:56.879275: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/b9b6/7332/tmphmo00qkz/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p'" in 1.6953 seconds and 54.8 Mi memory
2023-07-05 13:44:56.880272: Running the command: "cactus_analyseAssembly HG01109.2.sanitized.fa"
2023-07-05 13:44:56.882382: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/15a5/bafa/tmpp8tsiq6b/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p'" in 1.7011 seconds and 53.7 Mi memory
2023-07-05 13:44:56.886239: Running the command: "cactus_analyseAssembly HG02055.1.sanitized.fa"
2023-07-05 13:44:56.886296: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/862c/206d/tmp6a1045t_/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p'" in 1.7068 seconds and 54.0 Mi memory
2023-07-05 13:44:56.889330: Running the command: "cactus_analyseAssembly HG03453.2.sanitized.fa"
2023-07-05 13:44:56.890741: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/fa1f/a45f/tmpfyxbyp8p/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p'" in 1.722 seconds and 154.0 Mi memory
2023-07-05 13:44:56.893173: Running the command: "cactus_analyseAssembly HG01361.1.sanitized.fa"
2023-07-05 13:44:56.893929: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/9e71/d6d0/tmph7wtc0l_/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p'" in 1.7491 seconds and 153.9 Mi memory
2023-07-05 13:44:56.895426: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/e1fb/f20c/tmpa9vco6jy/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p'" in 1.7117 seconds and 51.9 Mi memory
2023-07-05 13:44:56.896841: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/7b5b/eb4e/tmpdg0w940h/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p'" in 1.7154 seconds and 51.9 Mi memory
2023-07-05 13:44:56.897698: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/8200/49a1/tmp6ez43rlx/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p'" in 1.7327 seconds and 53.7 Mi memory
2023-07-05 13:44:56.898467: Running the command: "cactus_analyseAssembly HG02717.1.sanitized.fa"
2023-07-05 13:44:56.901303: Running the command: "cactus_analyseAssembly HG01978.2.sanitized.fa"
2023-07-05 13:44:56.902807: Running the command: "cactus_analyseAssembly HG03486.1.sanitized.fa"
2023-07-05 13:44:56.904445: Running the command: "cactus_analyseAssembly HG02145.2.sanitized.fa"
2023-07-05 13:44:56.904869: Running the command: "cactus_analyseAssembly HG01175.2.sanitized.fa"
2023-07-05 13:44:56.911157: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/7548/67fa/tmpr5idrkm5/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p'" in 1.7418 seconds and 154.0 Mi memory
2023-07-05 13:44:56.916280: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/ff11/287a/tmp5cqobpln/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p'" in 1.7732 seconds and 153.9 Mi memory
2023-07-05 13:44:56.918436: Running the command: "cactus_analyseAssembly HG02886.1.sanitized.fa"
2023-07-05 13:44:56.923784: Running the command: "cactus_analyseAssembly HG01952.2.sanitized.fa"
2023-07-05 13:44:56.929115: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/451d/41a3/tmppxy5_ctp/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p'" in 1.7517 seconds and 154.0 Mi memory
2023-07-05 13:44:56.936076: Running the command: "cactus_analyseAssembly HG01358.2.sanitized.fa"
2023-07-05 13:44:56.942388: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/5333/4741/tmpsd08ksho/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p'" in 1.7626 seconds and 154.0 Mi memory
2023-07-05 13:44:56.948964: Running the command: "cactus_analyseAssembly HG01361.2.sanitized.fa"
2023-07-05 13:44:56.953796: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/15c1/11ca/tmpkxr_b1hj/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p'" in 1.7606 seconds and 59.9 Mi memory
2023-07-05 13:44:56.960642: Running the command: "cactus_analyseAssembly HG02257.1.sanitized.fa"
2023-07-05 13:44:56.960676: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/f423/4e24/tmp5j8fkrjw/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p'" in 1.772 seconds and 154.0 Mi memory
2023-07-05 13:44:56.967854: Running the command: "cactus_analyseAssembly HG00735.2.sanitized.fa"
2023-07-05 13:44:57.692886: Successfully ran: "cactus_analyseAssembly HG00741.2.sanitized.fa" in 1.0281 seconds and 51.9 Mi memory
2023-07-05 13:44:57.713502: Successfully ran: "cactus_analyseAssembly HG02109.1.sanitized.fa" in 1.0282 seconds and 51.9 Mi memory
2023-07-05 13:44:57.865566: Successfully ran: "cactus_analyseAssembly HG03486.2.sanitized.fa" in 1.0814 seconds and 51.9 Mi memory
2023-07-05 13:44:57.922236: Successfully ran: "cactus_analyseAssembly NA18906.2.sanitized.fa" in 1.1055 seconds and 54.9 Mi memory
2023-07-05 13:44:57.939934: Successfully ran: "cactus_analyseAssembly HG02080.2.sanitized.fa" in 1.0826 seconds and 51.9 Mi memory
2023-07-05 13:44:57.950897: Successfully ran: "cactus_analyseAssembly NA20129.1.sanitized.fa" in 1.1061 seconds and 51.9 Mi memory
2023-07-05 13:44:57.958727: Successfully ran: "cactus_analyseAssembly HG01928.2.sanitized.fa" in 1.1044 seconds and 53.9 Mi memory
2023-07-05 13:44:57.960460: Successfully ran: "cactus_analyseAssembly HG03098.2.sanitized.fa" in 1.1087 seconds and 51.9 Mi memory
2023-07-05 13:44:57.962014: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 1.0986 seconds and 51.9 Mi memory
2023-07-05 13:44:57.962645: Successfully ran: "cactus_analyseAssembly HG02622.2.sanitized.fa" in 1.1108 seconds and 51.8 Mi memory
2023-07-05 13:44:57.969146: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 1.1115 seconds and 52.4 Mi memory
2023-07-05 13:44:57.971827: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 1.1065 seconds and 51.9 Mi memory
2023-07-05 13:44:57.975533: Successfully ran: "cactus_analyseAssembly HG01106.1.sanitized.fa" in 1.1065 seconds and 54.7 Mi memory
2023-07-05 13:44:57.977204: Successfully ran: "cactus_analyseAssembly HG01978.1.sanitized.fa" in 1.109 seconds and 71.4 Mi memory
2023-07-05 13:44:57.979352: Successfully ran: "cactus_analyseAssembly HG02145.1.sanitized.fa" in 1.1161 seconds and 51.9 Mi memory
2023-07-05 13:44:57.979826: Successfully ran: "cactus_analyseAssembly HG01071.2.sanitized.fa" in 1.1123 seconds and 71.4 Mi memory
2023-07-05 13:44:57.980458: Successfully ran: "cactus_analyseAssembly HG02080.1.sanitized.fa" in 1.1038 seconds and 51.9 Mi memory
2023-07-05 13:44:57.983939: Successfully ran: "cactus_analyseAssembly HG03540.1.sanitized.fa" in 1.1114 seconds and 53.7 Mi memory
2023-07-05 13:44:57.985228: Successfully ran: "cactus_analyseAssembly HG03098.1.sanitized.fa" in 1.1055 seconds and 56.0 Mi memory
2023-07-05 13:44:57.994033: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 1.1129 seconds and 53.4 Mi memory
2023-07-05 13:44:57.994462: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 1.1041 seconds and 53.7 Mi memory
2023-07-05 13:44:57.997862: Successfully ran: "cactus_analyseAssembly HG02055.1.sanitized.fa" in 1.1105 seconds and 54.7 Mi memory
2023-07-05 13:44:58.001092: Successfully ran: "cactus_analyseAssembly HG01361.1.sanitized.fa" in 1.1072 seconds and 53.9 Mi memory
2023-07-05 13:44:58.013075: Successfully ran: "cactus_analyseAssembly HG03486.1.sanitized.fa" in 1.1094 seconds and 51.9 Mi memory
2023-07-05 13:44:58.015815: Successfully ran: "cactus_analyseAssembly HG01175.2.sanitized.fa" in 1.1101 seconds and 53.7 Mi memory
2023-07-05 13:44:58.018045: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 1.1127 seconds and 51.9 Mi memory
2023-07-05 13:44:58.039822: Successfully ran: "cactus_analyseAssembly HG01978.2.sanitized.fa" in 1.1376 seconds and 153.9 Mi memory
2023-07-05 13:44:58.046951: Successfully ran: "cactus_analyseAssembly HG02717.1.sanitized.fa" in 1.1476 seconds and 153.9 Mi memory
2023-07-05 13:44:58.069950: Successfully ran: "cactus_analyseAssembly HG02886.1.sanitized.fa" in 1.1507 seconds and 153.9 Mi memory
2023-07-05 13:44:58.073609: Successfully ran: "cactus_analyseAssembly HG01952.2.sanitized.fa" in 1.149 seconds and 153.9 Mi memory
2023-07-05 13:44:58.086254: Successfully ran: "cactus_analyseAssembly HG01358.2.sanitized.fa" in 1.1493 seconds and 153.9 Mi memory
2023-07-05 13:44:58.087829: Successfully ran: "cactus_analyseAssembly HG02257.1.sanitized.fa" in 1.1263 seconds and 59.8 Mi memory
2023-07-05 13:44:58.093224: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 1.1433 seconds and 153.9 Mi memory
2023-07-05 13:44:58.127664: Successfully ran: "cactus_analyseAssembly HG00735.2.sanitized.fa" in 1.1588 seconds and 153.9 Mi memory
2023-07-05 13:44:59.298716: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/436a/c625/tmpvra4wm9c/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-05 13:44:59.788418: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/2369/d0a1/tmptyrui_ui/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p"
2023-07-05 13:44:59.790903: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/1071/a043/tmpswr8t8f2/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p"
2023-07-05 13:45:00.562328: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/018e/5241/tmp751kmkek/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p"
2023-07-05 13:45:00.562843: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/08f8/d4e6/tmpo2rvgxt9/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p"
2023-07-05 13:45:00.563027: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/f0e5/7b0b/tmp_nnfjyv9/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p"
2023-07-05 13:45:00.563289: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/34ef/271f/tmp_zi5thw6/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p"
2023-07-05 13:45:00.564460: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/c61e/c8b8/tmpfn8uzgzf/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p"
2023-07-05 13:45:00.564767: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/a7db/2491/tmpwq2y89le/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p"
2023-07-05 13:45:00.564763: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/1d80/b677/tmpqz37255d/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p"
2023-07-05 13:45:00.565303: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/3214/5d4e/tmp7k71hyq4/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p"
2023-07-05 13:45:00.615151: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/dafe/ebfd/tmp1ce5an69/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p"
2023-07-05 13:45:01.011249: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/77bb/c4bd/tmpyorrqxvr/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-05 13:45:01.012248: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/00bb/e413/tmpo056y5kb/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
2023-07-05 13:45:01.012248: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/0319/d002/tmpi6rsi5zf/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
2023-07-05 13:45:01.013180: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/b845/54ad/tmpljdj8y4_/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p"
2023-07-05 13:45:01.013381: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/931a/37a3/tmpmr6muyvm/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p"
2023-07-05 13:45:01.013612: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/076b/b41f/tmpa7biaf5e/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p"
Got message from job at time 07-05-2023 13:45:01: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 15 Total-length: 190808928 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 116424585 Median-sequence-length: 790220 Max-sequence-length: 116424585 Min-sequence-length: 51873

Got message from job at time 07-05-2023 13:45:01: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 11 Total-length: 146718450 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39360441 Median-sequence-length: 10709456 Max-sequence-length: 42425782 Min-sequence-length: 22791

Got message from job at time 07-05-2023 13:45:01: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 20 Total-length: 134161404 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32317546 Median-sequence-length: 2644130 Max-sequence-length: 34882202 Min-sequence-length: 27271

Got message from job at time 07-05-2023 13:45:01: Assembly stats for HG03453.1: Input-sample: HG03453.1.sanitized.fa Total-sequences: 15 Total-length: 147543767 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43466661 Median-sequence-length: 1023771 Max-sequence-length: 52848293 Min-sequence-length: 23057

2023-07-05 13:45:01.403548: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/a773/7649/tmpkup6yxsu/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-05 13:45:01.403741: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/4b38/db07/tmpthtuc426/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p"
2023-07-05 13:45:01.403743: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/5701/7587/tmp_55yhiq1/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p"
2023-07-05 13:45:01.404479: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/51f4/debb/tmpipt7in_t/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p"
Got message from job at time 07-05-2023 13:45:01: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 9 Total-length: 147960996 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25073331 Median-sequence-length: 12432563 Max-sequence-length: 42592142 Min-sequence-length: 1986463

Got message from job at time 07-05-2023 13:45:01: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 6 Total-length: 146598676 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 86792174 Median-sequence-length: 11814886 Max-sequence-length: 86792174 Min-sequence-length: 1549740

Got message from job at time 07-05-2023 13:45:01: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 4 Total-length: 145453169 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 136238624 Median-sequence-length: 5404823 Max-sequence-length: 136238624 Min-sequence-length: 1829834

Got message from job at time 07-05-2023 13:45:01: Assembly stats for HG00735.1: Input-sample: HG00735.1.sanitized.fa Total-sequences: 3 Total-length: 146290853 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 139716345 Median-sequence-length: 4463411 Max-sequence-length: 139716345 Min-sequence-length: 2111097

Got message from job at time 07-05-2023 13:45:01: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 10 Total-length: 145852809 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33232407 Median-sequence-length: 8842100 Max-sequence-length: 57434508 Min-sequence-length: 865889

Got message from job at time 07-05-2023 13:45:01: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 8 Total-length: 144150659 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42355689 Median-sequence-length: 4249504 Max-sequence-length: 51235241 Min-sequence-length: 973249

Got message from job at time 07-05-2023 13:45:01: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 16664 Total-length: 151342326 Proportion-repeat-masked: 0.002448 ProportionNs: 0.002448 Total-Ns: 370500 N50: 80964 Median-sequence-length: 100 Max-sequence-length: 1956226 Min-sequence-length: 1

Got message from job at time 07-05-2023 13:45:01: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 7 Total-length: 134135085 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39514882 Median-sequence-length: 10828299 Max-sequence-length: 57495392 Min-sequence-length: 39017

Got message from job at time 07-05-2023 13:45:01: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 10 Total-length: 134413595 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39433569 Median-sequence-length: 4509417 Max-sequence-length: 60867944 Min-sequence-length: 18556

Got message from job at time 07-05-2023 13:45:01: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 5 Total-length: 148421943 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 45463251 Median-sequence-length: 32590779 Max-sequence-length: 56306595 Min-sequence-length: 48558

Got message from job at time 07-05-2023 13:45:01: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 3 Total-length: 191631156 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 184364754 Median-sequence-length: 5320545 Max-sequence-length: 184364754 Min-sequence-length: 1945857

Got message from job at time 07-05-2023 13:45:01: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 6 Total-length: 191032807 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 58255936 Median-sequence-length: 35863130 Max-sequence-length: 79388783 Min-sequence-length: 1963683

Got message from job at time 07-05-2023 13:45:01: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 10 Total-length: 143173256 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41336627 Median-sequence-length: 7223259 Max-sequence-length: 52922334 Min-sequence-length: 29119

Got message from job at time 07-05-2023 13:45:01: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 4 Total-length: 145720292 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 100593632 Median-sequence-length: 37906118 Max-sequence-length: 100593632 Min-sequence-length: 2130479

2023-07-05 13:45:01.770437: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/458e/de5c/tmpjawqgrlw/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p"
2023-07-05 13:45:01.770883: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/e2fa/42d1/tmp31cn6vtq/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p"
2023-07-05 13:45:01.770908: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/bdae/53d1/tmp69kkggzc/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p"
Got message from job at time 07-05-2023 13:45:01: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 6 Total-length: 146677846 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32974335 Median-sequence-length: 31649077 Max-sequence-length: 52794818 Min-sequence-length: 657627

Got message from job at time 07-05-2023 13:45:01: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 16 Total-length: 191805093 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18954444 Median-sequence-length: 10323941 Max-sequence-length: 59523589 Min-sequence-length: 643219

Got message from job at time 07-05-2023 13:45:01: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 5 Total-length: 146256147 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 80079628 Median-sequence-length: 4480267 Max-sequence-length: 80079628 Min-sequence-length: 2080413

Got message from job at time 07-05-2023 13:45:01: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 9 Total-length: 146182665 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42128600 Median-sequence-length: 6052061 Max-sequence-length: 58983200 Min-sequence-length: 1933001

Got message from job at time 07-05-2023 13:45:01: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 7 Total-length: 144867369 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44972731 Median-sequence-length: 5081108 Max-sequence-length: 51427907 Min-sequence-length: 81051

Got message from job at time 07-05-2023 13:45:01: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 6 Total-length: 145493923 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 88600742 Median-sequence-length: 11956675 Max-sequence-length: 88600742 Min-sequence-length: 2109666

Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 3 Total-length: 145767729 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44513869 Median-sequence-length: 44513869 Max-sequence-length: 61394553 Min-sequence-length: 39859307

Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 8 Total-length: 146032105 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42143092 Median-sequence-length: 10170848 Max-sequence-length: 58313926 Min-sequence-length: 658597

2023-07-05 13:45:02.085362: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/436a/c625/tmpvra4wm9c/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p'" in 2.7848 seconds and 56.7 Mi memory
2023-07-05 13:45:02.092755: Running the command: "cactus_analyseAssembly HG00733.2.sanitized.fa"
2023-07-05 13:45:02.110932: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/e2ab/3689/tmp3c7fpczf/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p"
2023-07-05 13:45:02.111230: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/a949/9e87/tmpo91v_7qq/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p"
2023-07-05 13:45:02.111399: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/895e/983b/tmp_eto6xuh/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p"
Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 14 Total-length: 188941199 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17071351 Median-sequence-length: 12692934 Max-sequence-length: 32606022 Min-sequence-length: 2260505

2023-07-05 13:45:02.139202: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/7551/e4d9/tmpmhefibkd/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p"
Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 6 Total-length: 146854845 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54091827 Median-sequence-length: 31594614 Max-sequence-length: 58340239 Min-sequence-length: 41300

Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 7 Total-length: 143942492 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37794883 Median-sequence-length: 20896700 Max-sequence-length: 58737809 Min-sequence-length: 39926

Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 10 Total-length: 146627955 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42500300 Median-sequence-length: 7521808 Max-sequence-length: 59637010 Min-sequence-length: 86101

Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 5 Total-length: 189801172 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51120480 Median-sequence-length: 26167025 Max-sequence-length: 80774358 Min-sequence-length: 7378698

2023-07-05 13:45:02.423598: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/7ccb/dd9d/tmp675_40cd/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p"
2023-07-05 13:45:02.423606: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/d731/f261/tmpwxz7ei67/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p"
2023-07-05 13:45:02.423829: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/22be/c013/tmp194lmtzh/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p"
Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 10 Total-length: 145295593 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34085389 Median-sequence-length: 9242196 Max-sequence-length: 41945325 Min-sequence-length: 639422

Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 6 Total-length: 189290054 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 132678729 Median-sequence-length: 23091563 Max-sequence-length: 132678729 Min-sequence-length: 83905

Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 6 Total-length: 135711064 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 100910710 Median-sequence-length: 9289316 Max-sequence-length: 100910710 Min-sequence-length: 44913

Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 3 Total-length: 137176732 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 128128700 Median-sequence-length: 8975675 Max-sequence-length: 128128700 Min-sequence-length: 72357

Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG02622.1: Input-sample: HG02622.1.sanitized.fa Total-sequences: 5 Total-length: 145672484 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40155784 Median-sequence-length: 32941628 Max-sequence-length: 60124452 Min-sequence-length: 41300

Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 6 Total-length: 146258989 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 80042321 Median-sequence-length: 24196134 Max-sequence-length: 80042321 Min-sequence-length: 2128011

Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 10 Total-length: 145034959 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41457071 Median-sequence-length: 5301420 Max-sequence-length: 54382392 Min-sequence-length: 516504

Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG01071.1: Input-sample: HG01071.1.sanitized.fa Total-sequences: 7 Total-length: 146447408 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 80369101 Median-sequence-length: 2105325 Max-sequence-length: 80369101 Min-sequence-length: 44061

Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 6 Total-length: 145486096 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31046044 Median-sequence-length: 28569332 Max-sequence-length: 58293225 Min-sequence-length: 1673146

Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 7 Total-length: 145483581 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 77973244 Median-sequence-length: 10690193 Max-sequence-length: 77973244 Min-sequence-length: 2114219

Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 5 Total-length: 145683082 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 99189422 Median-sequence-length: 4480904 Max-sequence-length: 99189422 Min-sequence-length: 870867

Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 5 Total-length: 145277980 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 88592221 Median-sequence-length: 13624893 Max-sequence-length: 88592221 Min-sequence-length: 52877

Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 4 Total-length: 145080469 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 80401782 Median-sequence-length: 58320482 Max-sequence-length: 80401782 Min-sequence-length: 1973299

Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 4 Total-length: 145987501 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 100932147 Median-sequence-length: 42900536 Max-sequence-length: 100932147 Min-sequence-length: 37077

Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 7 Total-length: 147817577 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44777333 Median-sequence-length: 12465989 Max-sequence-length: 57467121 Min-sequence-length: 865552

Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 8 Total-length: 146719257 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 96761357 Median-sequence-length: 3923318 Max-sequence-length: 96761357 Min-sequence-length: 24575

Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 4 Total-length: 146534089 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 58310733 Median-sequence-length: 58310733 Max-sequence-length: 62020146 Min-sequence-length: 10585583

Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG00741.1: Input-sample: HG00741.1.sanitized.fa Total-sequences: 2 Total-length: 148696830 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 146623042 Median-sequence-length: 146623042 Max-sequence-length: 146623042 Min-sequence-length: 2073788

Got message from job at time 07-05-2023 13:45:02: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 9 Total-length: 145878558 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44319002 Median-sequence-length: 9427008 Max-sequence-length: 58321760 Min-sequence-length: 360202

Got message from job at time 07-05-2023 13:45:02: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 145138636 Proportion-repeat-masked: 0.002553 ProportionNs: 0.002553 Total-Ns: 370500 N50: 145138636 Median-sequence-length: 145138636 Max-sequence-length: 145138636 Min-sequence-length: 145138636

2023-07-05 13:45:03.001110: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/2369/d0a1/tmptyrui_ui/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p'" in 3.2111 seconds and 77.1 Mi memory
2023-07-05 13:45:03.011469: Running the command: "cactus_analyseAssembly HG00438.1.sanitized.fa"
Got message from job at time 07-05-2023 13:45:03: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 2 Total-length: 146321068 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 144198862 Median-sequence-length: 144198862 Max-sequence-length: 144198862 Min-sequence-length: 2122206

Got message from job at time 07-05-2023 13:45:03: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 146259331 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 146259331 Median-sequence-length: 146259331 Max-sequence-length: 146259331 Min-sequence-length: 146259331

2023-07-05 13:45:03.061604: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/1071/a043/tmpswr8t8f2/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p'" in 3.2692 seconds and 56.6 Mi memory
Got message from job at time 07-05-2023 13:45:03: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 4 Total-length: 146351920 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44889171 Median-sequence-length: 44889171 Max-sequence-length: 58334429 Min-sequence-length: 26501

2023-07-05 13:45:03.070447: Running the command: "cactus_analyseAssembly HG03540.1.sanitized.fa"
Got message from job at time 07-05-2023 13:45:03: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 12 Total-length: 149000181 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39412323 Median-sequence-length: 4964663 Max-sequence-length: 58328871 Min-sequence-length: 22492

Got message from job at time 07-05-2023 13:45:03: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 5 Total-length: 144641310 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37595143 Median-sequence-length: 32446338 Max-sequence-length: 59440601 Min-sequence-length: 6613158

Got message from job at time 07-05-2023 13:45:03: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 5 Total-length: 146085710 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 108994640 Median-sequence-length: 3051356 Max-sequence-length: 108994640 Min-sequence-length: 864709

Got message from job at time 07-05-2023 13:45:03: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 7 Total-length: 146293584 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44719827 Median-sequence-length: 6472075 Max-sequence-length: 61949085 Min-sequence-length: 538977

Got message from job at time 07-05-2023 13:45:03: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 19 Total-length: 145160499 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 73604169 Median-sequence-length: 1059071 Max-sequence-length: 73604169 Min-sequence-length: 28571

Got message from job at time 07-05-2023 13:45:03: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 17 Total-length: 146132230 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20293169 Median-sequence-length: 3930184 Max-sequence-length: 41295290 Min-sequence-length: 378331

Got message from job at time 07-05-2023 13:45:03: Assembly stats for NA20129.1: Input-sample: NA20129.1.sanitized.fa Total-sequences: 10 Total-length: 144750584 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29766885 Median-sequence-length: 9275505 Max-sequence-length: 58332026 Min-sequence-length: 26778

Got message from job at time 07-05-2023 13:45:03: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 9 Total-length: 146329954 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31647259 Median-sequence-length: 11693931 Max-sequence-length: 43157268 Min-sequence-length: 3924315

2023-07-05 13:45:03.431888: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/f0e5/7b0b/tmp_nnfjyv9/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p'" in 2.8676 seconds and 53.2 Mi memory
2023-07-05 13:45:03.439575: Running the command: "cactus_analyseAssembly HG02818.2.sanitized.fa"
2023-07-05 13:45:03.447570: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/34ef/271f/tmp_zi5thw6/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p'" in 2.8834 seconds and 51.9 Mi memory
2023-07-05 13:45:03.449082: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/1d80/b677/tmpqz37255d/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p'" in 2.8832 seconds and 51.9 Mi memory
2023-07-05 13:45:03.452192: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/018e/5241/tmp751kmkek/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p'" in 2.8884 seconds and 64.8 Mi memory
2023-07-05 13:45:03.454955: Running the command: "cactus_analyseAssembly HG02886.2.sanitized.fa"
2023-07-05 13:45:03.456489: Running the command: "cactus_analyseAssembly HG01109.2.sanitized.fa"
2023-07-05 13:45:03.459606: Running the command: "cactus_analyseAssembly HG01358.1.sanitized.fa"
2023-07-05 13:45:03.474255: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/c61e/c8b8/tmpfn8uzgzf/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p'" in 2.9084 seconds and 51.9 Mi memory
2023-07-05 13:45:03.476764: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/3214/5d4e/tmp7k71hyq4/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p'" in 2.9101 seconds and 58.4 Mi memory
2023-07-05 13:45:03.481666: Running the command: "cactus_analyseAssembly HG01928.2.sanitized.fa"
2023-07-05 13:45:03.484997: Running the command: "cactus_analyseAssembly HG03453.2.sanitized.fa"
2023-07-05 13:45:03.487857: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/08f8/d4e6/tmpo2rvgxt9/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p'" in 2.9239 seconds and 154.0 Mi memory
2023-07-05 13:45:03.488746: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/dafe/ebfd/tmp1ce5an69/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p'" in 2.8726 seconds and 51.9 Mi memory
2023-07-05 13:45:03.495208: Running the command: "cactus_analyseAssembly HG01071.1.sanitized.fa"
2023-07-05 13:45:03.495925: Running the command: "cactus_analyseAssembly HG01243.2.sanitized.fa"
2023-07-05 13:45:03.521289: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/a7db/2491/tmpwq2y89le/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p'" in 2.9554 seconds and 154.0 Mi memory
2023-07-05 13:45:03.528499: Running the command: "cactus_analyseAssembly HG02572.2.sanitized.fa"
2023-07-05 13:45:03.837595: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/931a/37a3/tmpmr6muyvm/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p'" in 2.8231 seconds and 51.9 Mi memory
2023-07-05 13:45:03.844776: Running the command: "cactus_analyseAssembly HG03579.1.sanitized.fa"
2023-07-05 13:45:03.855249: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/77bb/c4bd/tmpyorrqxvr/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p'" in 2.8425 seconds and 51.9 Mi memory
2023-07-05 13:45:03.862088: Running the command: "cactus_analyseAssembly HG00621.1.sanitized.fa"
2023-07-05 13:45:03.864386: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/b845/54ad/tmpljdj8y4_/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p'" in 2.8503 seconds and 58.3 Mi memory
2023-07-05 13:45:03.871464: Running the command: "cactus_analyseAssembly HG00673.1.sanitized.fa"
2023-07-05 13:45:03.889395: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/0319/d002/tmpi6rsi5zf/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p'" in 2.876 seconds and 153.9 Mi memory
2023-07-05 13:45:03.891636: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/076b/b41f/tmpa7biaf5e/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p'" in 2.8769 seconds and 154.0 Mi memory
2023-07-05 13:45:03.896035: Running the command: "cactus_analyseAssembly HG01123.2.sanitized.fa"
2023-07-05 13:45:03.898458: Running the command: "cactus_analyseAssembly HG02559.2.sanitized.fa"
2023-07-05 13:45:03.951044: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/00bb/e413/tmpo056y5kb/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p'" in 2.9377 seconds and 185.6 Mi memory
2023-07-05 13:45:03.958401: Running the command: "cactus_analyseAssembly CHM13.sanitized.fa"
2023-07-05 13:45:03.961688: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 1.8681 seconds and 56.8 Mi memory
2023-07-05 13:45:04.194287: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/51f4/debb/tmpipt7in_t/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p'" in 2.7887 seconds and 51.8 Mi memory
2023-07-05 13:45:04.201031: Running the command: "cactus_analyseAssembly HG02055.2.sanitized.fa"
2023-07-05 13:45:04.229960: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/a773/7649/tmpkup6yxsu/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p'" in 2.8249 seconds and 64.7 Mi memory
2023-07-05 13:45:04.236530: Running the command: "cactus_analyseAssembly HG01175.2.sanitized.fa"
2023-07-05 13:45:04.241256: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/4b38/db07/tmpthtuc426/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p'" in 2.8361 seconds and 153.9 Mi memory
2023-07-05 13:45:04.248210: Running the command: "cactus_analyseAssembly HG01258.2.sanitized.fa"
2023-07-05 13:45:04.254263: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/5701/7587/tmp_55yhiq1/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p'" in 2.8492 seconds and 153.9 Mi memory
2023-07-05 13:45:04.260787: Running the command: "cactus_analyseAssembly HG02622.1.sanitized.fa"
2023-07-05 13:45:04.535545: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/e2fa/42d1/tmp31cn6vtq/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p'" in 2.7637 seconds and 51.9 Mi memory
2023-07-05 13:45:04.542418: Running the command: "cactus_analyseAssembly HG02723.2.sanitized.fa"
2023-07-05 13:45:04.581929: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/bdae/53d1/tmp69kkggzc/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p'" in 2.8101 seconds and 154.0 Mi memory
2023-07-05 13:45:04.588197: Running the command: "cactus_analyseAssembly HG00741.2.sanitized.fa"
2023-07-05 13:45:04.616082: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/458e/de5c/tmpjawqgrlw/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p'" in 2.8445 seconds and 154.0 Mi memory
2023-07-05 13:45:04.622209: Running the command: "cactus_analyseAssembly HG03516.1.sanitized.fa"
2023-07-05 13:45:04.715148: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/e2ab/3689/tmp3c7fpczf/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p'" in 2.6031 seconds and 51.9 Mi memory
2023-07-05 13:45:04.721779: Running the command: "cactus_analyseAssembly HG03579.2.sanitized.fa"
2023-07-05 13:45:04.730978: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/a949/9e87/tmpo91v_7qq/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p'" in 2.6187 seconds and 51.9 Mi memory
2023-07-05 13:45:04.737747: Running the command: "cactus_analyseAssembly HG03486.2.sanitized.fa"
2023-07-05 13:45:04.744977: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/895e/983b/tmp_eto6xuh/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p'" in 2.6326 seconds and 154.0 Mi memory
2023-07-05 13:45:04.751236: Running the command: "cactus_analyseAssembly HG02486.2.sanitized.fa"
2023-07-05 13:45:05.036777: Successfully ran: "cactus_analyseAssembly HG00438.1.sanitized.fa" in 2.0242 seconds and 77.1 Mi memory
2023-07-05 13:45:05.046928: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 1.6065 seconds and 53.1 Mi memory
2023-07-05 13:45:05.060784: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 1.6034 seconds and 51.8 Mi memory
2023-07-05 13:45:05.065536: Successfully ran: "cactus_analyseAssembly HG01358.1.sanitized.fa" in 1.6051 seconds and 64.7 Mi memory
2023-07-05 13:45:05.068003: Successfully ran: "cactus_analyseAssembly HG02886.2.sanitized.fa" in 1.6121 seconds and 51.9 Mi memory
2023-07-05 13:45:05.103247: Successfully ran: "cactus_analyseAssembly HG01243.2.sanitized.fa" in 1.6066 seconds and 51.8 Mi memory
2023-07-05 13:45:05.103506: Successfully ran: "cactus_analyseAssembly HG03540.1.sanitized.fa" in 2.0322 seconds and 56.5 Mi memory
2023-07-05 13:45:05.104699: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 1.6188 seconds and 58.3 Mi memory
2023-07-05 13:45:05.108096: Successfully ran: "cactus_analyseAssembly HG01928.2.sanitized.fa" in 1.6255 seconds and 51.9 Mi memory
2023-07-05 13:45:05.145008: Successfully ran: "cactus_analyseAssembly HG01071.1.sanitized.fa" in 1.649 seconds and 153.9 Mi memory
2023-07-05 13:45:05.219479: Successfully ran: "cactus_analyseAssembly HG02572.2.sanitized.fa" in 1.6901 seconds and 153.9 Mi memory
2023-07-05 13:45:05.476915: Successfully ran: "cactus_analyseAssembly HG03579.1.sanitized.fa" in 1.6313 seconds and 51.9 Mi memory
2023-07-05 13:45:05.501657: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 1.6387 seconds and 51.9 Mi memory
2023-07-05 13:45:05.512763: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 1.6404 seconds and 58.3 Mi memory
2023-07-05 13:45:05.589401: Successfully ran: "cactus_analyseAssembly HG01123.2.sanitized.fa" in 1.6926 seconds and 153.9 Mi memory
2023-07-05 13:45:05.606215: Successfully ran: "cactus_analyseAssembly HG02559.2.sanitized.fa" in 1.7069 seconds and 153.9 Mi memory
2023-07-05 13:45:05.718417: Successfully ran: "cactus_analyseAssembly CHM13.sanitized.fa" in 1.7591 seconds and 185.6 Mi memory
2023-07-05 13:45:05.770032: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/cba2/6056/tmpz9p7pvj4/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
2023-07-05 13:45:05.854157: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/7551/e4d9/tmpmhefibkd/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p'" in 3.7141 seconds and 51.9 Mi memory
2023-07-05 13:45:05.860242: Running the command: "cactus_analyseAssembly NA20129.1.sanitized.fa"
2023-07-05 13:45:05.877764: Successfully ran: "cactus_analyseAssembly HG02055.2.sanitized.fa" in 1.6758 seconds and 51.9 Mi memory
2023-07-05 13:45:05.930016: Successfully ran: "cactus_analyseAssembly HG01175.2.sanitized.fa" in 1.6926 seconds and 64.7 Mi memory
2023-07-05 13:45:05.970186: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 1.7212 seconds and 153.9 Mi memory
2023-07-05 13:45:05.988872: Successfully ran: "cactus_analyseAssembly HG02622.1.sanitized.fa" in 1.7273 seconds and 153.9 Mi memory
2023-07-05 13:45:06.160448: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 1.6172 seconds and 51.9 Mi memory
2023-07-05 13:45:06.174413: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/7ccb/dd9d/tmp675_40cd/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p'" in 3.7496 seconds and 51.9 Mi memory
2023-07-05 13:45:06.174881: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/d731/f261/tmpwxz7ei67/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p'" in 3.7501 seconds and 51.9 Mi memory
2023-07-05 13:45:06.180661: Running the command: "cactus_analyseAssembly HG02055.1.sanitized.fa"
2023-07-05 13:45:06.180843: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/22be/c013/tmp194lmtzh/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p'" in 3.7557 seconds and 51.9 Mi memory
2023-07-05 13:45:06.181001: Running the command: "cactus_analyseAssembly HG01952.1.sanitized.fa"
2023-07-05 13:45:06.187142: Running the command: "cactus_analyseAssembly HG03492.2.sanitized.fa"
2023-07-05 13:45:06.240987: Successfully ran: "cactus_analyseAssembly HG00741.2.sanitized.fa" in 1.652 seconds and 153.9 Mi memory
2023-07-05 13:45:06.289098: Successfully ran: "cactus_analyseAssembly HG03579.2.sanitized.fa" in 1.5664 seconds and 51.9 Mi memory
2023-07-05 13:45:06.307193: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 1.6842 seconds and 153.9 Mi memory
2023-07-05 13:45:06.316270: Successfully ran: "cactus_analyseAssembly HG03486.2.sanitized.fa" in 1.5777 seconds and 51.9 Mi memory
2023-07-05 13:45:06.351843: Successfully ran: "cactus_analyseAssembly HG02486.2.sanitized.fa" in 1.5998 seconds and 153.9 Mi memory
2023-07-05 13:45:07.288571: Successfully ran: "cactus_analyseAssembly NA20129.1.sanitized.fa" in 1.4274 seconds and 51.9 Mi memory
2023-07-05 13:45:07.559689: Successfully ran: "cactus_analyseAssembly HG02055.1.sanitized.fa" in 1.3782 seconds and 51.8 Mi memory
2023-07-05 13:45:07.567760: Successfully ran: "cactus_analyseAssembly HG01952.1.sanitized.fa" in 1.3861 seconds and 51.8 Mi memory
2023-07-05 13:45:07.567950: Successfully ran: "cactus_analyseAssembly HG03492.2.sanitized.fa" in 1.3799 seconds and 51.9 Mi memory
2023-07-05 13:45:07.900659: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0eb100b409605ef9a067a598d4d89da5/cba2/6056/tmpz9p7pvj4/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p'" in 2.1295 seconds and 5.0 Mi memory
2023-07-05 13:45:07.907315: Running the command: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa"
Got message from job at time 07-05-2023 13:45:08: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 6 Total-length: 133483576 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 91470238 Median-sequence-length: 1517689 Max-sequence-length: 91470238 Min-sequence-length: 53529

Got message from job at time 07-05-2023 13:45:08: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 7 Total-length: 133807513 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31172110 Median-sequence-length: 15496566 Max-sequence-length: 57293291 Min-sequence-length: 22007

Got message from job at time 07-05-2023 13:45:08: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 4 Total-length: 141387777 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 77124640 Median-sequence-length: 43577606 Max-sequence-length: 77124640 Min-sequence-length: 48953

Got message from job at time 07-05-2023 13:45:08: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 24 Total-length: 134078572 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34372455 Median-sequence-length: 517714 Max-sequence-length: 42253327 Min-sequence-length: 43434

Got message from job at time 07-05-2023 13:45:08: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 16 Total-length: 133497573 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19842258 Median-sequence-length: 5991632 Max-sequence-length: 40331061 Min-sequence-length: 41529

Got message from job at time 07-05-2023 13:45:08: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 16 Total-length: 135254859 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31371240 Median-sequence-length: 4363133 Max-sequence-length: 37575886 Min-sequence-length: 25637

Got message from job at time 07-05-2023 13:45:08: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 9 Total-length: 135701676 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22995607 Median-sequence-length: 6652616 Max-sequence-length: 67000444 Min-sequence-length: 54336

Got message from job at time 07-05-2023 13:45:08: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 15 Total-length: 134365934 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15686139 Median-sequence-length: 7436982 Max-sequence-length: 31553252 Min-sequence-length: 50793

Got message from job at time 07-05-2023 13:45:08: Assembly stats for NA18906.1: Input-sample: NA18906.1.sanitized.fa Total-sequences: 7 Total-length: 135175398 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32741326 Median-sequence-length: 8986491 Max-sequence-length: 52095279 Min-sequence-length: 1709757

Got message from job at time 07-05-2023 13:45:08: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 133797422 Proportion-repeat-masked: 0.003994 ProportionNs: 0.003994 Total-Ns: 534424 N50: 133797422 Median-sequence-length: 133797422 Max-sequence-length: 133797422 Min-sequence-length: 133797422

Got message from job at time 07-05-2023 13:45:08: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 7 Total-length: 134802805 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 80042719 Median-sequence-length: 7990858 Max-sequence-length: 80042719 Min-sequence-length: 22551

Got message from job at time 07-05-2023 13:45:08: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 13 Total-length: 134814154 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17875639 Median-sequence-length: 8499529 Max-sequence-length: 43027654 Min-sequence-length: 32293

Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 5 Total-length: 136183003 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 77222744 Median-sequence-length: 8797189 Max-sequence-length: 77222744 Min-sequence-length: 178442

Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-rn8b5npu v1 with job batch system ID: 2659 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 4 Total-length: 136873679 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 135796793 Median-sequence-length: 557650 Max-sequence-length: 135796793 Min-sequence-length: 50149

Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 4 Total-length: 134159614 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40345902 Median-sequence-length: 40345902 Max-sequence-length: 57249657 Min-sequence-length: 1616823

Got message from job at time 07-05-2023 13:45:09: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 134758134 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 134758134 Median-sequence-length: 134758134 Max-sequence-length: 134758134 Min-sequence-length: 134758134

Got message from job at time 07-05-2023 13:45:09: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 7 Total-length: 134842751 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 84572218 Median-sequence-length: 8801872 Max-sequence-length: 84572218 Min-sequence-length: 125280

Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 12 Total-length: 134616767 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31477711 Median-sequence-length: 6358016 Max-sequence-length: 50536446 Min-sequence-length: 46143

Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 9 Total-length: 134362967 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31755425 Median-sequence-length: 8319003 Max-sequence-length: 39533143 Min-sequence-length: 175705

Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 4 Total-length: 134653273 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 132853766 Median-sequence-length: 1604091 Max-sequence-length: 132853766 Min-sequence-length: 58657

Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 9 Total-length: 135013342 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32167753 Median-sequence-length: 9308162 Max-sequence-length: 46103165 Min-sequence-length: 66885

Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 7 Total-length: 136882201 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 90903961 Median-sequence-length: 2980847 Max-sequence-length: 90903961 Min-sequence-length: 17946

Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 15 Total-length: 135964457 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32032027 Median-sequence-length: 3734026 Max-sequence-length: 46514943 Min-sequence-length: 22019

2023-07-05 13:45:09.287388: Successfully ran: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa" in 1.3793 seconds and 4.5 Mi memory
Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 14 Total-length: 134269349 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32123614 Median-sequence-length: 5430395 Max-sequence-length: 56574268 Min-sequence-length: 43434

Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 6 Total-length: 135413746 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 69718407 Median-sequence-length: 10378340 Max-sequence-length: 69718407 Min-sequence-length: 1573786

Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 4 Total-length: 134747733 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 132639532 Median-sequence-length: 1525529 Max-sequence-length: 132639532 Min-sequence-length: 119488

Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG00741.1: Input-sample: HG00741.1.sanitized.fa Total-sequences: 7 Total-length: 135334592 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 90683659 Median-sequence-length: 1835434 Max-sequence-length: 90683659 Min-sequence-length: 47976

Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 7 Total-length: 134684634 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28408086 Median-sequence-length: 23569926 Max-sequence-length: 32440334 Min-sequence-length: 556192

Got message from job at time 07-05-2023 13:45:09: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 13 Total-length: 135263956 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19060700 Median-sequence-length: 7741257 Max-sequence-length: 27447685 Min-sequence-length: 25889

Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 10 Total-length: 133809791 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32109029 Median-sequence-length: 8327741 Max-sequence-length: 61628859 Min-sequence-length: 26904

Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 3 Total-length: 133982642 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40074129 Median-sequence-length: 40074129 Max-sequence-length: 57345822 Min-sequence-length: 36562691

Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 10 Total-length: 134916959 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31844716 Median-sequence-length: 8811552 Max-sequence-length: 60375508 Min-sequence-length: 26055

Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 9 Total-length: 134961782 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39756202 Median-sequence-length: 5986427 Max-sequence-length: 40877250 Min-sequence-length: 84970

Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 5 Total-length: 135030756 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 128202746 Median-sequence-length: 471781 Max-sequence-length: 128202746 Min-sequence-length: 24577

Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 10 Total-length: 135933179 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32531045 Median-sequence-length: 7793751 Max-sequence-length: 58518322 Min-sequence-length: 20825

Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 6 Total-length: 134568332 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36480003 Median-sequence-length: 36202585 Max-sequence-length: 46627313 Min-sequence-length: 56278

Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG00735.1: Input-sample: HG00735.1.sanitized.fa Total-sequences: 9 Total-length: 135558486 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36745875 Median-sequence-length: 9604004 Max-sequence-length: 61723503 Min-sequence-length: 59506

Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 7 Total-length: 132006925 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 68601273 Median-sequence-length: 12760296 Max-sequence-length: 68601273 Min-sequence-length: 36306

Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 4 Total-length: 135304955 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 89933416 Median-sequence-length: 19576988 Max-sequence-length: 89933416 Min-sequence-length: 8810466

Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 7 Total-length: 135363301 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 75132679 Median-sequence-length: 3538071 Max-sequence-length: 75132679 Min-sequence-length: 25388

Got message from job at time 07-05-2023 13:45:09: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 8 Total-length: 136371043 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28405827 Median-sequence-length: 14547635 Max-sequence-length: 58660487 Min-sequence-length: 62602

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 18 Total-length: 229193530 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34856322 Median-sequence-length: 4217911 Max-sequence-length: 70396086 Min-sequence-length: 33164

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 10 Total-length: 59561436 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12028681 Median-sequence-length: 6201738 Max-sequence-length: 18488630 Min-sequence-length: 19100

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 15 Total-length: 231031145 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 73291817 Median-sequence-length: 3191828 Max-sequence-length: 76908017 Min-sequence-length: 24701

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG01071.1: Input-sample: HG01071.1.sanitized.fa Total-sequences: 14 Total-length: 234756948 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 78622481 Median-sequence-length: 3989538 Max-sequence-length: 85221375 Min-sequence-length: 384252

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 20 Total-length: 244333252 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34572104 Median-sequence-length: 5326706 Max-sequence-length: 60494670 Min-sequence-length: 16169

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG03453.1: Input-sample: HG03453.1.sanitized.fa Total-sequences: 19 Total-length: 237149062 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31620820 Median-sequence-length: 6622873 Max-sequence-length: 59558147 Min-sequence-length: 37907

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 13 Total-length: 227435395 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30252217 Median-sequence-length: 17141366 Max-sequence-length: 59967352 Min-sequence-length: 78933

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 16 Total-length: 240486058 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35912626 Median-sequence-length: 6291622 Max-sequence-length: 70453501 Min-sequence-length: 58526

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 17 Total-length: 244668100 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42276787 Median-sequence-length: 3240977 Max-sequence-length: 67287852 Min-sequence-length: 69651

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 13 Total-length: 243733666 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42251230 Median-sequence-length: 8283137 Max-sequence-length: 49239967 Min-sequence-length: 43129

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 13 Total-length: 242316026 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 77445952 Median-sequence-length: 3350891 Max-sequence-length: 86157377 Min-sequence-length: 128399

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 15 Total-length: 241412062 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27340257 Median-sequence-length: 11887687 Max-sequence-length: 77166798 Min-sequence-length: 200674

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 21 Total-length: 230409231 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34885979 Median-sequence-length: 3228945 Max-sequence-length: 63272134 Min-sequence-length: 24727

Got message from job at time 07-05-2023 13:45:10: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 248956422 Proportion-repeat-masked: 0.074211 ProportionNs: 0.074211 Total-Ns: 18475408 N50: 248956422 Median-sequence-length: 248956422 Max-sequence-length: 248956422 Min-sequence-length: 248956422

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 35 Total-length: 249799313 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37049109 Median-sequence-length: 2214677 Max-sequence-length: 56444918 Min-sequence-length: 54698

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 8 Total-length: 235559205 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 121805943 Median-sequence-length: 2514018 Max-sequence-length: 121805943 Min-sequence-length: 859185

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 14 Total-length: 232795472 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54097957 Median-sequence-length: 4438788 Max-sequence-length: 90452069 Min-sequence-length: 34824

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 20 Total-length: 237247319 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 46468975 Median-sequence-length: 3167712 Max-sequence-length: 76421986 Min-sequence-length: 32755

Got message from job at time 07-05-2023 13:45:10: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 248387328 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 248387328 Median-sequence-length: 248387328 Max-sequence-length: 248387328 Min-sequence-length: 248387328

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 7 Total-length: 244751635 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 50348198 Median-sequence-length: 34851497 Max-sequence-length: 107158400 Min-sequence-length: 898188

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG02622.1: Input-sample: HG02622.1.sanitized.fa Total-sequences: 10 Total-length: 245619911 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 49575234 Median-sequence-length: 17157695 Max-sequence-length: 86918668 Min-sequence-length: 43642

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 10 Total-length: 238917081 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 95642958 Median-sequence-length: 3190708 Max-sequence-length: 112892036 Min-sequence-length: 20259

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 12 Total-length: 61348944 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16961141 Median-sequence-length: 1591621 Max-sequence-length: 18509828 Min-sequence-length: 19613

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 9 Total-length: 248687462 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 62449490 Median-sequence-length: 8020977 Max-sequence-length: 97288398 Min-sequence-length: 25231

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 11 Total-length: 247257373 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 174832057 Median-sequence-length: 3150068 Max-sequence-length: 174832057 Min-sequence-length: 93370

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 14 Total-length: 254455684 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 60096763 Median-sequence-length: 12235465 Max-sequence-length: 80566430 Min-sequence-length: 21831

Got message from job at time 07-05-2023 13:45:10: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 7 Total-length: 60739156 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12115347 Median-sequence-length: 7772754 Max-sequence-length: 25446580 Min-sequence-length: 1133272

Got message from job at time 07-05-2023 13:45:12: Assembly stats for NA18906.1: Input-sample: NA18906.1.sanitized.fa Total-sequences: 8 Total-length: 62601470 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23974295 Median-sequence-length: 2920272 Max-sequence-length: 27131048 Min-sequence-length: 28081

Got message from job at time 07-05-2023 13:45:12: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 11 Total-length: 60976674 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41478138 Median-sequence-length: 959358 Max-sequence-length: 41478138 Min-sequence-length: 21801

Got message from job at time 07-05-2023 13:45:12: Assembly stats for HG01071.1: Input-sample: HG01071.1.sanitized.fa Total-sequences: 27 Total-length: 61388091 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 13976004 Median-sequence-length: 491485 Max-sequence-length: 16794194 Min-sequence-length: 28574

Got message from job at time 07-05-2023 13:45:12: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 11 Total-length: 64031126 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17173924 Median-sequence-length: 1320832 Max-sequence-length: 27702926 Min-sequence-length: 184324

Got message from job at time 07-05-2023 13:45:12: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 14 Total-length: 61305604 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30929545 Median-sequence-length: 440843 Max-sequence-length: 30929545 Min-sequence-length: 31848

Got message from job at time 07-05-2023 13:45:12: Assembly stats for HG03453.1: Input-sample: HG03453.1.sanitized.fa Total-sequences: 7 Total-length: 61894873 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 11742392 Median-sequence-length: 6909329 Max-sequence-length: 30682987 Min-sequence-length: 55002

Got message from job at time 07-05-2023 13:45:12: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 12 Total-length: 61958705 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36865217 Median-sequence-length: 2285879 Max-sequence-length: 36865217 Min-sequence-length: 260746

Got message from job at time 07-05-2023 13:45:12: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 9 Total-length: 62540829 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 13883227 Median-sequence-length: 4000254 Max-sequence-length: 18879866 Min-sequence-length: 1592195

Got message from job at time 07-05-2023 13:45:12: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 5 Total-length: 60663147 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32008497 Median-sequence-length: 6040968 Max-sequence-length: 32008497 Min-sequence-length: 1025689

Got message from job at time 07-05-2023 13:45:12: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 3 Total-length: 134498053 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35292153 Median-sequence-length: 35292153 Max-sequence-length: 64919984 Min-sequence-length: 34285916

Got message from job at time 07-05-2023 13:45:12: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 9 Total-length: 61980609 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14347931 Median-sequence-length: 2897215 Max-sequence-length: 23269880 Min-sequence-length: 46244

Got message from job at time 07-05-2023 13:45:12: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 8 Total-length: 63685902 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44779616 Median-sequence-length: 2908036 Max-sequence-length: 44779616 Min-sequence-length: 34659

Got message from job at time 07-05-2023 13:45:12: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 7 Total-length: 134631544 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 38420717 Median-sequence-length: 16957508 Max-sequence-length: 50933819 Min-sequence-length: 147465

Got message from job at time 07-05-2023 13:45:12: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 6 Total-length: 60692521 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17971972 Median-sequence-length: 7233035 Max-sequence-length: 25525876 Min-sequence-length: 1018562

Got message from job at time 07-05-2023 13:45:12: Assembly stats for NA20129.1: Input-sample: NA20129.1.sanitized.fa Total-sequences: 10 Total-length: 61045974 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 11852265 Median-sequence-length: 4100719 Max-sequence-length: 23514488 Min-sequence-length: 547820

Got message from job at time 07-05-2023 13:45:12: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 7 Total-length: 62416548 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33755601 Median-sequence-length: 2900805 Max-sequence-length: 33755601 Min-sequence-length: 30039

Got message from job at time 07-05-2023 13:45:12: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 17 Total-length: 59751172 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 6824373 Median-sequence-length: 1221915 Max-sequence-length: 28222346 Min-sequence-length: 39524

Got message from job at time 07-05-2023 13:45:12: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 10 Total-length: 135607526 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14811770 Median-sequence-length: 14263974 Max-sequence-length: 34613431 Min-sequence-length: 1239635

Got message from job at time 07-05-2023 13:45:12: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 14 Total-length: 58707897 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 10450938 Median-sequence-length: 2324869 Max-sequence-length: 21831674 Min-sequence-length: 25206

Got message from job at time 07-05-2023 13:45:12: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 13 Total-length: 60827817 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31326808 Median-sequence-length: 1348672 Max-sequence-length: 31326808 Min-sequence-length: 44521

Got message from job at time 07-05-2023 13:45:12: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 9 Total-length: 134957607 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32323039 Median-sequence-length: 6243308 Max-sequence-length: 44655731 Min-sequence-length: 2169146

Got message from job at time 07-05-2023 13:45:12: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 9 Total-length: 61156800 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32633160 Median-sequence-length: 2926720 Max-sequence-length: 32633160 Min-sequence-length: 180823

Got message from job at time 07-05-2023 13:45:12: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 24 Total-length: 134829333 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 36 N50: 15630426 Median-sequence-length: 858095 Max-sequence-length: 45123911 Min-sequence-length: 101937

2023-07-05 13:45:12.657458: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/a4ea/e232/tmp48c9srfi/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p"
2023-07-05 13:45:12.659089: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/81a5/5436/tmpkg5qp3w4/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p"
2023-07-05 13:45:12.708384: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/62ab/28f6/tmpsschynhu/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
2023-07-05 13:45:12.718977: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4caf/0dd7/tmpf2chubi5/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:45:12.729817: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4d28/de9c/tmplb5wceat/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-05 13:45:12.731635: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0589/d7a9/tmpx714_3yn/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p"
2023-07-05 13:45:12.732591: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b812/641d/tmphxig__h9/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-05 13:45:12.741760: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/da97/0f12/tmpq9v1j4ap/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:45:12.747398: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/07e0/59d0/tmpd3_2mt8w/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-05 13:45:12.762476: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/c587/8ed6/tmp5xovg9gj/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p"
2023-07-05 13:45:12.767142: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/7a40/aaac/tmp0bydqzou/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p"
2023-07-05 13:45:12.775332: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/ea54/73f4/tmpvmhc958b/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p"
2023-07-05 13:45:12.780849: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/63ed/321e/tmp0dd024zh/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
2023-07-05 13:45:12.781666: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/6207/31cd/tmpo_13sp8z/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p"
2023-07-05 13:45:12.782551: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/61b2/03e2/tmplt7bmwkq/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p"
2023-07-05 13:45:12.783807: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/ff4b/5050/tmpoh4os9a7/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p"
2023-07-05 13:45:12.790375: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/dcab/8c86/tmpjfn8spaa/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p"
2023-07-05 13:45:12.791376: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/e333/1666/tmp4b59n9q7/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p"
2023-07-05 13:45:12.793533: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/2430/8b4f/tmpseribfnq/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p"
2023-07-05 13:45:12.802467: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/abec/db5b/tmpee7trgvf/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p"
2023-07-05 13:45:12.818410: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/bf05/d49c/tmppegf_jx8/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p"
2023-07-05 13:45:12.820838: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/6fc1/4cfe/tmpwank__b0/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p"
2023-07-05 13:45:12.827513: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/8e2f/bdc5/tmpshc_fnga/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p"
2023-07-05 13:45:12.828030: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/6efa/ec15/tmpdda1d19_/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p"
2023-07-05 13:45:12.828295: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/cb97/e0b5/tmpxf7jgt_x/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-05 13:45:12.837561: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/e13d/9ced/tmpco2ganey/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
2023-07-05 13:45:12.837809: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/2fd6/bd88/tmp_dvxva2w/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-05 13:45:12.837870: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/c9f6/eecd/tmpn7tsfau7/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p"
2023-07-05 13:45:12.842144: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b6bd/47b1/tmp99s_9j2x/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p"
2023-07-05 13:45:12.842676: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0e66/833b/tmpcjb9vej2/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-05 13:45:12.844831: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/cbb7/ad3d/tmpah261ezr/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p"
2023-07-05 13:45:12.846712: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/8309/13eb/tmp02fy7zec/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p"
2023-07-05 13:45:12.847737: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/7eb8/d547/tmpuultm0ot/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
2023-07-05 13:45:12.848955: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4b43/d5b9/tmpc9kjx427/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p"
2023-07-05 13:45:12.854956: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/6b55/8f30/tmp4v273st0/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p"
2023-07-05 13:45:12.855781: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/d369/0e78/tmpdr8tjzja/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p"
2023-07-05 13:45:12.856693: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/004e/d2c6/tmpfozt2mkl/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
2023-07-05 13:45:12.858197: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/7f59/893e/tmpys5uoare/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p"
2023-07-05 13:45:12.861057: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/c318/092f/tmpdbpbxj6z/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p"
2023-07-05 13:45:12.861969: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/684b/43d9/tmphk6qr0o5/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-05 13:45:12.862596: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4e72/7700/tmpgvf1ef8s/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p"
2023-07-05 13:45:12.869314: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/ddb6/d27b/tmpu80f38wh/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p"
2023-07-05 13:45:12.874759: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/55ea/94dc/tmpw8t1iy4k/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p"
2023-07-05 13:45:12.877708: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/6d97/5d15/tmprre2ab7d/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p"
2023-07-05 13:45:12.879380: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/112b/d747/tmpx_sygy2c/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p"
2023-07-05 13:45:12.880009: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/acd5/91de/tmp8_9g1tve/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p"
2023-07-05 13:45:12.880340: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/8c5c/9665/tmpzw7dr72g/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:45:12.885502: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/39ef/8205/tmp7403_7wk/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p"
2023-07-05 13:45:12.885676: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4a78/c931/tmp_3v9tpbi/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p"
2023-07-05 13:45:12.915480: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/76b0/cc15/tmp2rdp3r_l/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p"
2023-07-05 13:45:12.932007: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/2bf0/28e6/tmp0buo437o/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p"
2023-07-05 13:45:12.940159: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/ed2d/c059/tmpo7242ckg/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p"
2023-07-05 13:45:13.568179: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/81a5/5436/tmpkg5qp3w4/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p'" in 0.9076 seconds and 51.9 Mi memory
2023-07-05 13:45:13.572777: Running the command: "cactus_analyseAssembly HG02622.1.sanitized.fa"
2023-07-05 13:45:13.603758: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/a4ea/e232/tmp48c9srfi/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p'" in 0.9448 seconds and 51.9 Mi memory
Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-9sgowy2k v1 with job batch system ID: 2660 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 13:45:13.608052: Running the command: "cactus_analyseAssembly HG03453.1.sanitized.fa"
2023-07-05 13:45:13.611291: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/da97/0f12/tmpq9v1j4ap/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p'" in 0.8682 seconds and 25.4 Mi memory
2023-07-05 13:45:13.615830: Running the command: "cactus_analyseAssembly HG01109.1.sanitized.fa"
2023-07-05 13:45:13.626704: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4d28/de9c/tmplb5wceat/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p'" in 0.8957 seconds and 51.9 Mi memory
2023-07-05 13:45:13.631064: Running the command: "cactus_analyseAssembly HG03516.2.sanitized.fa"
2023-07-05 13:45:13.636481: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/62ab/28f6/tmpsschynhu/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p'" in 0.9267 seconds and 51.9 Mi memory
2023-07-05 13:45:13.639920: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b812/641d/tmphxig__h9/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p'" in 0.9058 seconds and 51.9 Mi memory
2023-07-05 13:45:13.641245: Running the command: "cactus_analyseAssembly HG01123.2.sanitized.fa"
2023-07-05 13:45:13.642124: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/7a40/aaac/tmp0bydqzou/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p'" in 0.8735 seconds and 51.9 Mi memory
2023-07-05 13:45:13.644304: Running the command: "cactus_analyseAssembly HG00621.1.sanitized.fa"
2023-07-05 13:45:13.644523: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/0589/d7a9/tmpx714_3yn/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p'" in 0.9114 seconds and 51.9 Mi memory
2023-07-05 13:45:13.648785: Running the command: "cactus_analyseAssembly HG00438.1.sanitized.fa"
2023-07-05 13:45:13.649963: Running the command: "cactus_analyseAssembly HG02630.1.sanitized.fa"
2023-07-05 13:45:13.668994: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/c587/8ed6/tmp5xovg9gj/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p'" in 0.9054 seconds and 51.9 Mi memory
2023-07-05 13:45:13.675956: Running the command: "cactus_analyseAssembly HG00673.1.sanitized.fa"
2023-07-05 13:45:13.709157: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/63ed/321e/tmp0dd024zh/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p'" in 0.9269 seconds and 51.9 Mi memory
2023-07-05 13:45:13.713261: Running the command: "cactus_analyseAssembly HG00621.2.sanitized.fa"
2023-07-05 13:45:13.715266: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/6207/31cd/tmpo_13sp8z/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p'" in 0.9321 seconds and 51.9 Mi memory
2023-07-05 13:45:13.719517: Running the command: "cactus_analyseAssembly HG01891.2.sanitized.fa"
2023-07-05 13:45:13.721089: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/07e0/59d0/tmpd3_2mt8w/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p'" in 0.9723 seconds and 51.9 Mi memory
2023-07-05 13:45:13.724690: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/61b2/03e2/tmplt7bmwkq/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p'" in 0.941 seconds and 25.1 Mi memory
2023-07-05 13:45:13.725209: Running the command: "cactus_analyseAssembly HG00733.1.sanitized.fa"
2023-07-05 13:45:13.728801: Running the command: "cactus_analyseAssembly HG02723.2.sanitized.fa"
2023-07-05 13:45:13.737004: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/6fc1/4cfe/tmpwank__b0/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p'" in 0.9147 seconds and 51.9 Mi memory
2023-07-05 13:45:13.765376: Running the command: "cactus_analyseAssembly NA18906.1.sanitized.fa"
2023-07-05 13:45:13.770088: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4b43/d5b9/tmpc9kjx427/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p'" in 0.9198 seconds and 51.9 Mi memory
2023-07-05 13:45:13.774192: Running the command: "cactus_analyseAssembly HG03492.1.sanitized.fa"
2023-07-05 13:45:13.776417: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/e333/1666/tmp4b59n9q7/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p'" in 0.9836 seconds and 25.1 Mi memory
2023-07-05 13:45:13.838909: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/acd5/91de/tmp8_9g1tve/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p'" in 0.9573 seconds and 57.3 Mi memory
2023-07-05 13:45:13.839502: Running the command: "cactus_analyseAssembly HG01361.1.sanitized.fa"
2023-07-05 13:45:13.841787: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/7eb8/d547/tmpuultm0ot/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p'" in 0.9927 seconds and 51.9 Mi memory
2023-07-05 13:45:13.841928: Running the command: "cactus_analyseAssembly HG02622.2.sanitized.fa"
2023-07-05 13:45:13.909192: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/ed2d/c059/tmpo7242ckg/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 0.9676 seconds and 51.9 Mi memory
2023-07-05 13:45:13.913163: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-05 13:45:14.002195: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/76b0/cc15/tmp2rdp3r_l/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p'" in 1.0852 seconds and 51.9 Mi memory
2023-07-05 13:45:14.006307: Running the command: "cactus_analyseAssembly HG01978.2.sanitized.fa"
2023-07-05 13:45:14.124552: Successfully ran: "cactus_analyseAssembly HG02622.1.sanitized.fa" in 0.5508 seconds and 51.9 Mi memory
2023-07-05 13:45:14.153076: Successfully ran: "cactus_analyseAssembly HG03453.1.sanitized.fa" in 0.5439 seconds and 51.9 Mi memory
2023-07-05 13:45:14.189016: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 0.5721 seconds and 25.3 Mi memory
2023-07-05 13:45:14.217074: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 0.5851 seconds and 51.9 Mi memory
2023-07-05 13:45:14.229565: Successfully ran: "cactus_analyseAssembly HG00438.1.sanitized.fa" in 0.5798 seconds and 51.9 Mi memory
2023-07-05 13:45:14.229781: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 0.5845 seconds and 51.9 Mi memory
2023-07-05 13:45:14.236532: Successfully ran: "cactus_analyseAssembly HG01123.2.sanitized.fa" in 0.5943 seconds and 51.9 Mi memory
2023-07-05 13:45:14.241265: Successfully ran: "cactus_analyseAssembly HG02630.1.sanitized.fa" in 0.5901 seconds and 51.9 Mi memory
2023-07-05 13:45:14.260940: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 0.584 seconds and 51.9 Mi memory
2023-07-05 13:45:14.313894: Successfully ran: "cactus_analyseAssembly HG00733.1.sanitized.fa" in 0.5877 seconds and 51.9 Mi memory
2023-07-05 13:45:14.323488: Successfully ran: "cactus_analyseAssembly NA21309.2.sanitized.fa" in 0.5753 seconds and 20.7 Mi memory
2023-07-05 13:45:14.324384: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 0.6102 seconds and 51.9 Mi memory
2023-07-05 13:45:14.327902: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 0.5822 seconds and 24.8 Mi memory
2023-07-05 13:45:14.333062: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 0.6033 seconds and 25.1 Mi memory
2023-07-05 13:45:14.336626: Successfully ran: "cactus_analyseAssembly HG01952.2.sanitized.fa" in 0.5948 seconds and 51.9 Mi memory
2023-07-05 13:45:14.347752: Successfully ran: "cactus_analyseAssembly HG01891.2.sanitized.fa" in 0.6272 seconds and 51.9 Mi memory
2023-07-05 13:45:14.413510: Successfully ran: "cactus_analyseAssembly NA21309.1.sanitized.fa" in 0.6155 seconds and 51.9 Mi memory
2023-07-05 13:45:14.431848: Successfully ran: "cactus_analyseAssembly HG02818.1.sanitized.fa" in 0.6097 seconds and 24.5 Mi memory
2023-07-05 13:45:14.432876: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 0.6274 seconds and 51.9 Mi memory
2023-07-05 13:45:14.436841: Successfully ran: "cactus_analyseAssembly HG03540.1.sanitized.fa" in 0.6148 seconds and 51.9 Mi memory
2023-07-05 13:45:14.535490: Successfully ran: "cactus_analyseAssembly HG03098.1.sanitized.fa" in 0.6438 seconds and 54.4 Mi memory
2023-07-05 13:45:14.537068: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 0.6372 seconds and 51.9 Mi memory
2023-07-05 13:45:14.568669: Successfully ran: "cactus_analyseAssembly HG02723.1.sanitized.fa" in 0.6546 seconds and 51.9 Mi memory
2023-07-05 13:45:14.665025: Successfully ran: "cactus_analyseAssembly HG01978.2.sanitized.fa" in 0.6577 seconds and 51.9 Mi memory
2023-07-05 13:45:17.554763: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/e3a4/48e1/tmpi_upd_o5/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p"
2023-07-05 13:45:17.676482: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/1c81/654b/tmp_xc5n286/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p"
2023-07-05 13:45:17.682357: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/216f/6c99/tmpekf8stxe/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p"
2023-07-05 13:45:17.744456: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/fff2/b199/tmp3rjod9mn/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p"
2023-07-05 13:45:17.744627: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/ce77/38b1/tmpqmeh2ue3/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p"
2023-07-05 13:45:17.751151: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/3622/528e/tmp2ca8w0_s/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-05 13:45:17.751827: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/072e/53e3/tmpj0hkdy5a/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p"
2023-07-05 13:45:17.770117: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/409d/3c61/tmpfil95jvw/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p"
2023-07-05 13:45:17.777059: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/6bba/b6da/tmp5no13s7_/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
2023-07-05 13:45:17.781656: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/d05d/6a71/tmpn73begi9/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p"
2023-07-05 13:45:17.785637: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/8b1f/8323/tmpnpj_vm61/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p"
2023-07-05 13:45:17.793394: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/5ebe/5d15/tmp2maorrfd/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p"
2023-07-05 13:45:17.798454: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/9dce/5ce6/tmpigfumdzj/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p"
2023-07-05 13:45:17.802517: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/cf17/18ac/tmpknuxiqh5/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p"
2023-07-05 13:45:17.805564: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/180f/038d/tmpjuoj07gs/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-05 13:45:17.806309: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/1321/8b49/tmp8p9kei5z/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p"
2023-07-05 13:45:17.806991: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/d001/1235/tmpcuan8gg8/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
2023-07-05 13:45:17.811652: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/5227/11a1/tmp9g5wfxcs/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p"
2023-07-05 13:45:17.814289: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/651e/eebe/tmptbukep9e/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p"
2023-07-05 13:45:17.817652: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/a1be/6a47/tmp1aseeoj9/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p"
2023-07-05 13:45:17.820121: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/1a6a/af74/tmp3wagj37_/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p"
2023-07-05 13:45:17.821672: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/44fb/4b9d/tmppw8pq1mi/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:45:17.821745: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/8789/d709/tmph56m5azs/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p"
2023-07-05 13:45:17.822808: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/ce72/868f/tmplzrgkfm9/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
2023-07-05 13:45:17.823047: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/af68/7e32/tmpl52xxhx7/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p"
2023-07-05 13:45:17.833527: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/2544/3448/tmp2tfupuo7/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p"
2023-07-05 13:45:17.835057: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/485b/9496/tmp_0hbhw4n/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p"
2023-07-05 13:45:17.837313: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/e384/f128/tmp2wmdoqxs/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p"
2023-07-05 13:45:17.840203: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/c18a/2952/tmp0ywwc1z8/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p"
2023-07-05 13:45:17.844559: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/4277/9e73/tmpahm4ntw4/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:45:17.844981: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/ce19/bd22/tmpu98xj2_6/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p"
2023-07-05 13:45:17.845109: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/f5cb/a16a/tmpfnyyhx6i/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-05 13:45:17.847132: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/e862/2e3d/tmphybdrd_0/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p"
2023-07-05 13:45:17.848660: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/ac62/a835/tmp_y7m368q/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p"
2023-07-05 13:45:17.851010: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/7b58/8c38/tmpz6uuy09s/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p"
2023-07-05 13:45:17.851505: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/5403/b623/tmpd0q13qcw/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p"
2023-07-05 13:45:17.851569: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/21bf/5151/tmpk1kbij0_/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
2023-07-05 13:45:17.852618: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/9d6e/a169/tmpb5wmgpwj/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p"
2023-07-05 13:45:17.855033: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/fb9d/ff31/tmpcepuv0xh/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p"
2023-07-05 13:45:17.865994: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/ec3b/1414/tmpffcxwwtj/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
2023-07-05 13:45:18.669043: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/5996/87d6/tmp00z_eaol/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p"
2023-07-05 13:45:18.677318: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/a648/015d/tmpbz8ih7fh/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p"
2023-07-05 13:45:18.770000: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/ea34/c371/tmp3vil9pef/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p"
2023-07-05 13:45:18.820878: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/a858/6b7e/tmp1tr7t0ap/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p"
2023-07-05 13:45:18.820965: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/67fb/c692/tmpuplb_2bb/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
2023-07-05 13:45:18.843579: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/cb9a/62c9/tmpm6khcyl9/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p"
2023-07-05 13:45:18.858796: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/3911/f10d/tmpwhsgfyfh/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p"
2023-07-05 13:45:18.874529: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/3b5c/e53a/tmpaihv3mwd/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p"
2023-07-05 13:45:18.896962: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/d713/31e4/tmp3xvfe1dv/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
2023-07-05 13:45:18.903871: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/6976/e744/tmpsmgfyli9/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p"
2023-07-05 13:45:19.402519: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/072e/53e3/tmpj0hkdy5a/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p'" in 1.6491 seconds and 51.8 Mi memory
2023-07-05 13:45:19.405144: Running the command: "cactus_analyseAssembly HG01175.1.sanitized.fa"
2023-07-05 13:45:19.405883: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/1c81/654b/tmp_xc5n286/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p'" in 1.7276 seconds and 51.8 Mi memory
2023-07-05 13:45:19.408298: Running the command: "cactus_analyseAssembly HG02109.1.sanitized.fa"
2023-07-05 13:45:19.422747: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/409d/3c61/tmpfil95jvw/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p'" in 1.651 seconds and 74.3 Mi memory
2023-07-05 13:45:19.425290: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/8b1f/8323/tmpnpj_vm61/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p'" in 1.638 seconds and 61.9 Mi memory
2023-07-05 13:45:19.425331: Running the command: "cactus_analyseAssembly HG02717.2.sanitized.fa"
2023-07-05 13:45:19.427864: Running the command: "cactus_analyseAssembly HG02257.1.sanitized.fa"
2023-07-05 13:45:19.432665: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/fff2/b199/tmp3rjod9mn/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p'" in 1.6866 seconds and 51.8 Mi memory
2023-07-05 13:45:19.435123: Running the command: "cactus_analyseAssembly NA20129.1.sanitized.fa"
2023-07-05 13:45:19.438401: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/180f/038d/tmpjuoj07gs/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p'" in 1.6311 seconds and 51.9 Mi memory
2023-07-05 13:45:19.439358: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/a1be/6a47/tmp1aseeoj9/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p'" in 1.6201 seconds and 51.9 Mi memory
2023-07-05 13:45:19.440988: Running the command: "cactus_analyseAssembly HG01175.2.sanitized.fa"
2023-07-05 13:45:19.441965: Running the command: "cactus_analyseAssembly HG01358.2.sanitized.fa"
2023-07-05 13:45:19.443177: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/651e/eebe/tmptbukep9e/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p'" in 1.6273 seconds and 64.0 Mi memory
2023-07-05 13:45:19.445785: Running the command: "cactus_analyseAssembly HG01258.2.sanitized.fa"
2023-07-05 13:45:19.447256: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/6bba/b6da/tmp5no13s7_/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p'" in 1.6685 seconds and 51.8 Mi memory
2023-07-05 13:45:19.447890: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/5227/11a1/tmp9g5wfxcs/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p'" in 1.6346 seconds and 51.8 Mi memory
2023-07-05 13:45:19.449475: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/3622/528e/tmp2ca8w0_s/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p'" in 1.6967 seconds and 77.3 Mi memory
2023-07-05 13:45:19.449853: Running the command: "cactus_analyseAssembly HG02109.2.sanitized.fa"
2023-07-05 13:45:19.450207: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/ce72/868f/tmplzrgkfm9/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p'" in 1.6257 seconds and 51.8 Mi memory
2023-07-05 13:45:19.450414: Running the command: "cactus_analyseAssembly HG01071.1.sanitized.fa"
2023-07-05 13:45:19.451995: Running the command: "cactus_analyseAssembly HG01258.1.sanitized.fa"
2023-07-05 13:45:19.452857: Running the command: "cactus_analyseAssembly HG02717.1.sanitized.fa"
2023-07-05 13:45:19.455720: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/9d6e/a169/tmpb5wmgpwj/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p'" in 1.6016 seconds and 24.5 Mi memory
2023-07-05 13:45:19.456731: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/2544/3448/tmp2tfupuo7/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p'" in 1.6217 seconds and 57.0 Mi memory
2023-07-05 13:45:19.457578: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/5403/b623/tmpd0q13qcw/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p'" in 1.6045 seconds and 54.4 Mi memory
2023-07-05 13:45:19.457857: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/1321/8b49/tmp8p9kei5z/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p'" in 1.65 seconds and 54.2 Mi memory
2023-07-05 13:45:19.458299: Running the command: "cactus_analyseAssembly HG02572.1.sanitized.fa"
2023-07-05 13:45:19.459454: Running the command: "cactus_analyseAssembly HG02818.2.sanitized.fa"
2023-07-05 13:45:19.460242: Running the command: "cactus_analyseAssembly HG03098.1.sanitized.fa"
2023-07-05 13:45:19.460526: Running the command: "cactus_analyseAssembly HG01106.1.sanitized.fa"
2023-07-05 13:45:19.460924: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/d001/1235/tmpcuan8gg8/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p'" in 1.6523 seconds and 56.2 Mi memory
2023-07-05 13:45:19.463544: Running the command: "cactus_analyseAssembly HG00438.2.sanitized.fa"
2023-07-05 13:45:19.463809: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/ce77/38b1/tmpqmeh2ue3/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p'" in 1.7176 seconds and 57.2 Mi memory
2023-07-05 13:45:19.463945: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/485b/9496/tmp_0hbhw4n/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p'" in 1.6274 seconds and 57.3 Mi memory
2023-07-05 13:45:19.465592: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/fb9d/ff31/tmpcepuv0xh/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p'" in 1.6091 seconds and 61.9 Mi memory
2023-07-05 13:45:19.466071: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/af68/7e32/tmpl52xxhx7/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 1.6415 seconds and 51.9 Mi memory
2023-07-05 13:45:19.466421: Running the command: "cactus_analyseAssembly HG03540.1.sanitized.fa"
2023-07-05 13:45:19.466487: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/e3a4/48e1/tmpi_upd_o5/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p'" in 1.9085 seconds and 51.8 Mi memory
2023-07-05 13:45:19.466569: Running the command: "cactus_analyseAssembly HG02257.2.sanitized.fa"
2023-07-05 13:45:19.466553: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/5ebe/5d15/tmp2maorrfd/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p'" in 1.6716 seconds and 64.5 Mi memory
2023-07-05 13:45:19.468215: Running the command: "cactus_analyseAssembly HG03453.1.sanitized.fa"
2023-07-05 13:45:19.468587: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-05 13:45:19.468801: Running the command: "cactus_analyseAssembly HG03486.2.sanitized.fa"
2023-07-05 13:45:19.469104: Running the command: "cactus_analyseAssembly HG02080.1.sanitized.fa"
2023-07-05 13:45:19.478290: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/a648/015d/tmpbz8ih7fh/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p'" in 0.7995 seconds and 51.9 Mi memory
2023-07-05 13:45:19.478751: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/f5cb/a16a/tmpfnyyhx6i/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p'" in 1.6322 seconds and 53.1 Mi memory
2023-07-05 13:45:19.480986: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/4277/9e73/tmpahm4ntw4/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p'" in 1.6349 seconds and 51.8 Mi memory
2023-07-05 13:45:19.481321: Running the command: "cactus_analyseAssembly HG00733.1.sanitized.fa"
2023-07-05 13:45:19.483501: Running the command: "cactus_analyseAssembly HG02145.1.sanitized.fa"
2023-07-05 13:45:19.484865: Running the command: "cactus_analyseAssembly HG02148.2.sanitized.fa"
2023-07-05 13:45:19.487715: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/21bf/5151/tmpk1kbij0_/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p'" in 1.6346 seconds and 51.9 Mi memory
2023-07-05 13:45:19.488122: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/c18a/2952/tmp0ywwc1z8/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p'" in 1.6463 seconds and 51.8 Mi memory
2023-07-05 13:45:19.490760: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/5996/87d6/tmp00z_eaol/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p'" in 0.8201 seconds and 51.9 Mi memory
2023-07-05 13:45:19.489798: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/e384/f128/tmp2wmdoqxs/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p'" in 1.651 seconds and 57.5 Mi memory
2023-07-05 13:45:19.490412: Running the command: "cactus_analyseAssembly HG03486.1.sanitized.fa"
2023-07-05 13:45:19.490697: Running the command: "cactus_analyseAssembly HG01358.1.sanitized.fa"
2023-07-05 13:45:19.492266: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
2023-07-05 13:45:19.494392: Running the command: "cactus_analyseAssembly HG03516.1.sanitized.fa"
2023-07-05 13:45:19.501824: Running the command: "cactus_analyseAssembly HG00741.1.sanitized.fa"
2023-07-05 13:45:19.511022: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/e862/2e3d/tmphybdrd_0/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p'" in 1.6622 seconds and 54.1 Mi memory
2023-07-05 13:45:19.513626: Running the command: "cactus_analyseAssembly HG01123.1.sanitized.fa"
2023-07-05 13:45:19.515720: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/cf17/18ac/tmpknuxiqh5/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p'" in 1.7117 seconds and 56.4 Mi memory
2023-07-05 13:45:19.516710: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/9dce/5ce6/tmpigfumdzj/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p'" in 1.7167 seconds and 56.9 Mi memory
2023-07-05 13:45:19.517393: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/ac62/a835/tmp_y7m368q/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p'" in 1.6672 seconds and 51.9 Mi memory
2023-07-05 13:45:19.518314: Running the command: "cactus_analyseAssembly HG01928.2.sanitized.fa"
2023-07-05 13:45:19.519286: Running the command: "cactus_analyseAssembly HG02559.1.sanitized.fa"
2023-07-05 13:45:19.519865: Running the command: "cactus_analyseAssembly HG02630.1.sanitized.fa"
2023-07-05 13:45:19.528306: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/7b58/8c38/tmpz6uuy09s/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p'" in 1.6758 seconds and 51.8 Mi memory
2023-07-05 13:45:19.528446: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/1a6a/af74/tmp3wagj37_/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p'" in 1.7068 seconds and 57.0 Mi memory
2023-07-05 13:45:19.529641: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/8789/d709/tmph56m5azs/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p'" in 1.7063 seconds and 51.9 Mi memory
2023-07-05 13:45:19.530902: Running the command: "cactus_analyseAssembly HG03492.1.sanitized.fa"
2023-07-05 13:45:19.530912: Running the command: "cactus_analyseAssembly NA20129.2.sanitized.fa"
2023-07-05 13:45:19.532231: Running the command: "cactus_analyseAssembly HG01978.1.sanitized.fa"
2023-07-05 13:45:19.592763: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/cb9a/62c9/tmpm6khcyl9/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p'" in 0.7478 seconds and 25.9 Mi memory
2023-07-05 13:45:19.597105: Running the command: "cactus_analyseAssembly HG02886.1.sanitized.fa"
2023-07-05 13:45:19.607169: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/ea34/c371/tmp3vil9pef/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p'" in 0.836 seconds and 51.9 Mi memory
2023-07-05 13:45:19.610823: Running the command: "cactus_analyseAssembly HG01109.2.sanitized.fa"
2023-07-05 13:45:19.614951: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/67fb/c692/tmpuplb_2bb/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p'" in 0.7927 seconds and 23.8 Mi memory
2023-07-05 13:45:19.618568: Running the command: "cactus_analyseAssembly HG02109.2.sanitized.fa"
2023-07-05 13:45:19.656617: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/a858/6b7e/tmp1tr7t0ap/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p'" in 0.8344 seconds and 51.9 Mi memory
2023-07-05 13:45:19.660563: Running the command: "cactus_analyseAssembly HG02080.1.sanitized.fa"
2023-07-05 13:45:19.688935: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/3b5c/e53a/tmpaihv3mwd/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p'" in 0.8131 seconds and 51.9 Mi memory
2023-07-05 13:45:19.688952: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/3911/f10d/tmpwhsgfyfh/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p'" in 0.8288 seconds and 51.9 Mi memory
2023-07-05 13:45:19.692836: Running the command: "cactus_analyseAssembly HG03492.2.sanitized.fa"
2023-07-05 13:45:19.693040: Running the command: "cactus_analyseAssembly HG03453.2.sanitized.fa"
2023-07-05 13:45:19.766314: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/6976/e744/tmpsmgfyli9/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p'" in 0.8611 seconds and 51.9 Mi memory
2023-07-05 13:45:19.773117: Running the command: "cactus_analyseAssembly HG01952.1.sanitized.fa"
2023-07-05 13:45:19.778518: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/d713/31e4/tmp3xvfe1dv/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p'" in 0.8802 seconds and 153.9 Mi memory
2023-07-05 13:45:19.782294: Running the command: "cactus_analyseAssembly CHM13.sanitized.fa"
2023-07-05 13:45:19.781133: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/ec3b/1414/tmpffcxwwtj/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p'" in 1.9135 seconds and 20.7 Mi memory
2023-07-05 13:45:19.783826: Running the command: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa"
2023-07-05 13:45:19.884664: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/72c0a7498ed0552aae15905e49755c5c/44fb/4b9d/tmppw8pq1mi/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 2.0613 seconds and 153.9 Mi memory
2023-07-05 13:45:19.887322: Running the command: "cactus_analyseAssembly GRCh38.sanitized.fa"
2023-07-05 13:45:20.055461: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 0.5602 seconds and 51.9 Mi memory
2023-07-05 13:45:20.058416: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 0.5725 seconds and 51.9 Mi memory
2023-07-05 13:45:20.117934: Successfully ran: "cactus_analyseAssembly HG02109.1.sanitized.fa" in 0.7087 seconds and 51.8 Mi memory
2023-07-05 13:45:20.120169: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 0.714 seconds and 51.8 Mi memory
2023-07-05 13:45:20.125867: Successfully ran: "cactus_analyseAssembly HG03486.2.sanitized.fa" in 0.6562 seconds and 51.8 Mi memory
2023-07-05 13:45:20.135157: Successfully ran: "cactus_analyseAssembly HG02257.1.sanitized.fa" in 0.7062 seconds and 61.9 Mi memory
2023-07-05 13:45:20.135801: Successfully ran: "cactus_analyseAssembly NA20129.1.sanitized.fa" in 0.6996 seconds and 51.8 Mi memory
2023-07-05 13:45:20.138375: Successfully ran: "cactus_analyseAssembly HG02717.2.sanitized.fa" in 0.7119 seconds and 74.2 Mi memory
2023-07-05 13:45:20.141620: Successfully ran: "cactus_analyseAssembly HG01175.2.sanitized.fa" in 0.6997 seconds and 51.8 Mi memory
2023-07-05 13:45:20.144081: Successfully ran: "cactus_analyseAssembly HG01358.2.sanitized.fa" in 0.7013 seconds and 51.8 Mi memory
2023-07-05 13:45:20.145766: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 0.6865 seconds and 24.5 Mi memory
2023-07-05 13:45:20.151682: Successfully ran: "cactus_analyseAssembly HG01071.1.sanitized.fa" in 0.7003 seconds and 51.8 Mi memory
2023-07-05 13:45:20.156822: Successfully ran: "cactus_analyseAssembly HG02886.1.sanitized.fa" in 0.5589 seconds and 25.8 Mi memory
2023-07-05 13:45:20.155876: Successfully ran: "cactus_analyseAssembly HG01258.1.sanitized.fa" in 0.7029 seconds and 77.3 Mi memory
2023-07-05 13:45:20.159269: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 0.7125 seconds and 63.9 Mi memory
2023-07-05 13:45:20.159803: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 0.709 seconds and 51.8 Mi memory
2023-07-05 13:45:20.165058: Successfully ran: "cactus_analyseAssembly HG02717.1.sanitized.fa" in 0.7111 seconds and 51.8 Mi memory
2023-07-05 13:45:20.174497: Successfully ran: "cactus_analyseAssembly HG03098.1.sanitized.fa" in 0.7133 seconds and 54.4 Mi memory
2023-07-05 13:45:20.177449: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 0.717 seconds and 57.0 Mi memory
2023-07-05 13:45:20.177768: Successfully ran: "cactus_analyseAssembly HG01106.1.sanitized.fa" in 0.7164 seconds and 54.1 Mi memory
2023-07-05 13:45:20.179125: Successfully ran: "cactus_analyseAssembly HG02723.1.sanitized.fa" in 0.7097 seconds and 51.8 Mi memory
2023-07-05 13:45:20.179566: Successfully ran: "cactus_analyseAssembly HG00438.2.sanitized.fa" in 0.7151 seconds and 56.2 Mi memory
2023-07-05 13:45:20.181200: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 0.5695 seconds and 51.9 Mi memory
2023-07-05 13:45:20.184084: Successfully ran: "cactus_analyseAssembly HG00438.1.sanitized.fa" in 0.6868 seconds and 53.6 Mi memory
2023-07-05 13:45:20.186205: Successfully ran: "cactus_analyseAssembly HG02257.2.sanitized.fa" in 0.7187 seconds and 57.2 Mi memory
2023-07-05 13:45:20.186494: Successfully ran: "cactus_analyseAssembly HG03453.1.sanitized.fa" in 0.7174 seconds and 61.9 Mi memory
2023-07-05 13:45:20.187334: Successfully ran: "cactus_analyseAssembly HG03540.1.sanitized.fa" in 0.72 seconds and 57.2 Mi memory
2023-07-05 13:45:20.189212: Successfully ran: "cactus_analyseAssembly HG02080.1.sanitized.fa" in 0.7192 seconds and 64.5 Mi memory
2023-07-05 13:45:20.201536: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 0.5822 seconds and 23.8 Mi memory
2023-07-05 13:45:20.205901: Successfully ran: "cactus_analyseAssembly HG02145.1.sanitized.fa" in 0.7214 seconds and 51.8 Mi memory
2023-07-05 13:45:20.206535: Successfully ran: "cactus_analyseAssembly HG00733.1.sanitized.fa" in 0.7242 seconds and 53.1 Mi memory
2023-07-05 13:45:20.213496: Successfully ran: "cactus_analyseAssembly HG01358.1.sanitized.fa" in 0.7219 seconds and 51.8 Mi memory
2023-07-05 13:45:20.214657: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 0.7106 seconds and 55.9 Mi memory
2023-07-05 13:45:20.219040: Successfully ran: "cactus_analyseAssembly HG03486.1.sanitized.fa" in 0.7276 seconds and 51.8 Mi memory
2023-07-05 13:45:20.221938: Successfully ran: "cactus_analyseAssembly HG03098.2.sanitized.fa" in 0.7288 seconds and 57.5 Mi memory
2023-07-05 13:45:20.235882: Successfully ran: "cactus_analyseAssembly HG01928.2.sanitized.fa" in 0.7166 seconds and 56.5 Mi memory
2023-07-05 13:45:20.237746: Successfully ran: "cactus_analyseAssembly HG00741.1.sanitized.fa" in 0.735 seconds and 76.1 Mi memory
2023-07-05 13:45:20.240328: Successfully ran: "cactus_analyseAssembly HG02559.1.sanitized.fa" in 0.7201 seconds and 57.0 Mi memory
2023-07-05 13:45:20.241950: Successfully ran: "cactus_analyseAssembly HG01123.1.sanitized.fa" in 0.7274 seconds and 54.1 Mi memory
2023-07-05 13:45:20.242457: Successfully ran: "cactus_analyseAssembly HG02630.1.sanitized.fa" in 0.7217 seconds and 51.8 Mi memory
2023-07-05 13:45:20.244803: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 0.713 seconds and 51.8 Mi memory
2023-07-05 13:45:20.250683: Successfully ran: "cactus_analyseAssembly HG02080.1.sanitized.fa" in 0.5893 seconds and 51.9 Mi memory
2023-07-05 13:45:20.254499: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 0.7226 seconds and 57.0 Mi memory
2023-07-05 13:45:20.256325: Successfully ran: "cactus_analyseAssembly HG01978.1.sanitized.fa" in 0.7231 seconds and 51.8 Mi memory
2023-07-05 13:45:20.301858: Successfully ran: "cactus_analyseAssembly HG03492.2.sanitized.fa" in 0.6082 seconds and 51.9 Mi memory
2023-07-05 13:45:20.302785: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 0.6089 seconds and 51.9 Mi memory
2023-07-05 13:45:20.408357: Successfully ran: "cactus_analyseAssembly HG01952.1.sanitized.fa" in 0.6343 seconds and 51.9 Mi memory
2023-07-05 13:45:20.471587: Successfully ran: "cactus_analyseAssembly CHM13.sanitized.fa" in 0.6883 seconds and 153.9 Mi memory
2023-07-05 13:45:20.547267: Successfully ran: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa" in 0.7625 seconds and 20.5 Mi memory
2023-07-05 13:45:20.734870: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 0.8465 seconds and 153.9 Mi memory
2023-07-05 13:45:21.256133: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9896/64d4/tmpk6k5qndr/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
2023-07-05 13:45:21.271969: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1db4/7982/tmpp75uq8qg/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p"
2023-07-05 13:45:21.288329: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/be07/e03a/tmpqfkpxdfn/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p"
2023-07-05 13:45:21.301288: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2807/be5a/tmp1ix8w8kv/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-05 13:45:21.319940: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3a/478e/tmp4jcne205/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p"
2023-07-05 13:45:21.323409: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9089/f90b/tmpyf3fn8hv/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-05 13:45:21.330430: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8bcf/9bf0/tmpqkhynqwl/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p"
2023-07-05 13:45:21.333739: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a9ad/54fc/tmplghshqxb/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p"
2023-07-05 13:45:21.338357: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/386d/4033/tmp9lu_jp09/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p"
2023-07-05 13:45:21.340202: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a3ad/872f/tmpp_91n70d/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p"
2023-07-05 13:45:21.342490: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3050/c9e8/tmpv1s3684o/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p"
2023-07-05 13:45:21.344291: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7b9b/8a4d/tmpdw65_ihg/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p"
2023-07-05 13:45:21.346517: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/61ea/148b/tmprjeca35n/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p"
2023-07-05 13:45:21.347108: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/db4b/ff3e/tmp2_m45hd9/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p"
2023-07-05 13:45:21.348870: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/55eb/6230/tmpqs4pgpsr/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p"
2023-07-05 13:45:21.351588: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/311e/c6cb/tmpxpi3slel/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p"
2023-07-05 13:45:21.351961: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9f34/231f/tmpp43a74_g/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p"
2023-07-05 13:45:21.354241: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/0fe3/cb17/tmp4nlr5789/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p"
2023-07-05 13:45:21.356283: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/30fa/3ba8/tmp4iddei5k/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
2023-07-05 13:45:21.358679: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/125f/2593/tmpbc7q286t/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p"
2023-07-05 13:45:21.361441: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5302/00a2/tmpqqmv42_w/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-05 13:45:21.363641: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/fc9a/421e/tmp__0ze2qt/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p"
2023-07-05 13:45:21.381579: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/468b/bdf2/tmp9ov4_ts1/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
Got message from job at time 07-05-2023 13:45:21: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 9 Total-length: 76751051 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 13875000 Median-sequence-length: 8274279 Max-sequence-length: 21584094 Min-sequence-length: 36873

Got message from job at time 07-05-2023 13:45:21: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 12 Total-length: 75200217 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12081298 Median-sequence-length: 4139636 Max-sequence-length: 18776451 Min-sequence-length: 36645

Got message from job at time 07-05-2023 13:45:21: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 7 Total-length: 77541486 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17320506 Median-sequence-length: 11371201 Max-sequence-length: 21583702 Min-sequence-length: 796428

Got message from job at time 07-05-2023 13:45:22: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 10 Total-length: 78167905 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 13858434 Median-sequence-length: 5450226 Max-sequence-length: 18927256 Min-sequence-length: 293776

Got message from job at time 07-05-2023 13:45:22: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 9 Total-length: 77107454 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14766960 Median-sequence-length: 5096313 Max-sequence-length: 17687570 Min-sequence-length: 1738440

Got message from job at time 07-05-2023 13:45:22: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 9 Total-length: 109230717 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33698677 Median-sequence-length: 7181359 Max-sequence-length: 35901056 Min-sequence-length: 291413

2023-07-05 13:45:22.807100: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/be07/e03a/tmpqfkpxdfn/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p'" in 1.5174 seconds and 51.9 Mi memory
2023-07-05 13:45:22.810986: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/468b/bdf2/tmp9ov4_ts1/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p'" in 1.4283 seconds and 5.8 Mi memory
2023-07-05 13:45:22.812692: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/61ea/148b/tmprjeca35n/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p'" in 1.4645 seconds and 51.9 Mi memory
2023-07-05 13:45:22.814641: Running the command: "cactus_analyseAssembly HG00673.1.sanitized.fa"
2023-07-05 13:45:22.820073: Running the command: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa"
2023-07-05 13:45:22.820469: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a3ad/872f/tmpp_91n70d/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p'" in 1.4788 seconds and 51.9 Mi memory
2023-07-05 13:45:22.820562: Running the command: "cactus_analyseAssembly NA20129.2.sanitized.fa"
2023-07-05 13:45:22.827805: Running the command: "cactus_analyseAssembly HG02886.2.sanitized.fa"
2023-07-05 13:45:22.831077: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/a9ad/54fc/tmplghshqxb/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p'" in 1.4961 seconds and 53.7 Mi memory
2023-07-05 13:45:22.837763: Running the command: "cactus_analyseAssembly HG00438.1.sanitized.fa"
2023-07-05 13:45:22.839500: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5302/00a2/tmpqqmv42_w/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p'" in 1.4771 seconds and 58.6 Mi memory
2023-07-05 13:45:22.841833: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9f34/231f/tmpp43a74_g/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p'" in 1.4885 seconds and 53.7 Mi memory
2023-07-05 13:45:22.846273: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/386d/4033/tmp9lu_jp09/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p'" in 1.5065 seconds and 55.5 Mi memory
2023-07-05 13:45:22.847380: Running the command: "cactus_analyseAssembly HG03516.2.sanitized.fa"
2023-07-05 13:45:22.849159: Running the command: "cactus_analyseAssembly HG03540.2.sanitized.fa"
2023-07-05 13:45:22.854754: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8bcf/9bf0/tmpqkhynqwl/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p'" in 1.5229 seconds and 53.7 Mi memory
2023-07-05 13:45:22.857827: Running the command: "cactus_analyseAssembly HG01891.1.sanitized.fa"
2023-07-05 13:45:22.859749: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9896/64d4/tmpk6k5qndr/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p'" in 1.6023 seconds and 154.0 Mi memory
2023-07-05 13:45:22.862531: Running the command: "cactus_analyseAssembly HG02148.2.sanitized.fa"
2023-07-05 13:45:22.866235: Running the command: "cactus_analyseAssembly HG00621.2.sanitized.fa"
2023-07-05 13:45:22.868657: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/125f/2593/tmpbc7q286t/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p'" in 1.5087 seconds and 70.7 Mi memory
2023-07-05 13:45:22.869630: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/2807/be5a/tmp1ix8w8kv/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p'" in 1.567 seconds and 154.0 Mi memory
2023-07-05 13:45:22.875549: Running the command: "cactus_analyseAssembly HG02257.2.sanitized.fa"
2023-07-05 13:45:22.876266: Running the command: "cactus_analyseAssembly HG00733.2.sanitized.fa"
2023-07-05 13:45:22.877523: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/9089/f90b/tmpyf3fn8hv/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p'" in 1.5529 seconds and 153.9 Mi memory
2023-07-05 13:45:22.884430: Running the command: "cactus_analyseAssembly HG00621.1.sanitized.fa"
2023-07-05 13:45:22.887759: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/311e/c6cb/tmpxpi3slel/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p'" in 1.535 seconds and 54.8 Mi memory
2023-07-05 13:45:22.889318: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/30fa/3ba8/tmp4iddei5k/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p'" in 1.5318 seconds and 154.2 Mi memory
2023-07-05 13:45:22.891390: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1db4/7982/tmpp75uq8qg/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p'" in 1.6181 seconds and 154.0 Mi memory
2023-07-05 13:45:22.895354: Running the command: "cactus_analyseAssembly HG02630.1.sanitized.fa"
2023-07-05 13:45:22.898140: Running the command: "cactus_analyseAssembly HG01123.1.sanitized.fa"
2023-07-05 13:45:22.902504: Running the command: "cactus_analyseAssembly CHM13.sanitized.fa"
2023-07-05 13:45:22.903890: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/3050/c9e8/tmpv1s3684o/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p'" in 1.5598 seconds and 72.5 Mi memory
2023-07-05 13:45:22.910408: Running the command: "cactus_analyseAssembly HG01928.1.sanitized.fa"
2023-07-05 13:45:22.913337: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/55eb/6230/tmpqs4pgpsr/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p'" in 1.5632 seconds and 154.0 Mi memory
2023-07-05 13:45:22.915053: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/0fe3/cb17/tmp4nlr5789/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p'" in 1.5594 seconds and 61.7 Mi memory
2023-07-05 13:45:22.920476: Running the command: "cactus_analyseAssembly HG02486.1.sanitized.fa"
2023-07-05 13:45:22.926743: Running the command: "cactus_analyseAssembly HG01358.1.sanitized.fa"
2023-07-05 13:45:22.928634: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/db4b/ff3e/tmp2_m45hd9/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p'" in 1.5799 seconds and 54.0 Mi memory
2023-07-05 13:45:22.934747: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7b9b/8a4d/tmpdw65_ihg/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p'" in 1.5891 seconds and 154.0 Mi memory
2023-07-05 13:45:22.935991: Running the command: "cactus_analyseAssembly HG01952.1.sanitized.fa"
2023-07-05 13:45:22.938557: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a3a/478e/tmp4jcne205/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p'" in 1.6174 seconds and 154.0 Mi memory
2023-07-05 13:45:22.942154: Running the command: "cactus_analyseAssembly HG00741.1.sanitized.fa"
2023-07-05 13:45:22.942406: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/fc9a/421e/tmp__0ze2qt/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p'" in 1.5775 seconds and 154.0 Mi memory
2023-07-05 13:45:22.945643: Running the command: "cactus_analyseAssembly HG02559.2.sanitized.fa"
2023-07-05 13:45:22.949452: Running the command: "cactus_analyseAssembly HG01071.1.sanitized.fa"
Got message from job at time 07-05-2023 13:45:23: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 5 Total-length: 78311415 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18797646 Median-sequence-length: 12819166 Max-sequence-length: 33362413 Min-sequence-length: 4156347

Got message from job at time 07-05-2023 13:45:23: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 5 Total-length: 77023078 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17334199 Median-sequence-length: 14769560 Max-sequence-length: 23878193 Min-sequence-length: 8957857

Got message from job at time 07-05-2023 13:45:23: Assembly stats for NA20129.1: Input-sample: NA20129.1.sanitized.fa Total-sequences: 7 Total-length: 79818368 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20337815 Median-sequence-length: 6975550 Max-sequence-length: 35932823 Min-sequence-length: 34523

Got message from job at time 07-05-2023 13:45:23: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 7 Total-length: 76686274 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17215136 Median-sequence-length: 12101100 Max-sequence-length: 21429604 Min-sequence-length: 128713

2023-07-05 13:45:23.818692: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 1.0031 seconds and 51.9 Mi memory
2023-07-05 13:45:23.821173: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 0.9997 seconds and 51.9 Mi memory
2023-07-05 13:45:23.844350: Successfully ran: "cactus_analyseAssembly HG02886.2.sanitized.fa" in 1.0156 seconds and 51.9 Mi memory
2023-07-05 13:45:23.854579: Successfully ran: "cactus_analyseAssembly HG00438.1.sanitized.fa" in 1.016 seconds and 53.7 Mi memory
2023-07-05 13:45:23.856207: Successfully ran: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa" in 1.0353 seconds and 5.7 Mi memory
2023-07-05 13:45:23.869847: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 1.0215 seconds and 58.6 Mi memory
2023-07-05 13:45:23.872451: Successfully ran: "cactus_analyseAssembly HG03540.2.sanitized.fa" in 1.0224 seconds and 53.7 Mi memory
2023-07-05 13:45:23.882625: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 1.0192 seconds and 53.7 Mi memory
2023-07-05 13:45:23.886972: Successfully ran: "cactus_analyseAssembly HG01891.1.sanitized.fa" in 1.0281 seconds and 55.5 Mi memory
2023-07-05 13:45:23.915547: Successfully ran: "cactus_analyseAssembly HG02257.2.sanitized.fa" in 1.0391 seconds and 70.7 Mi memory
2023-07-05 13:45:23.921210: Successfully ran: "cactus_analyseAssembly HG02630.1.sanitized.fa" in 1.025 seconds and 54.7 Mi memory
2023-07-05 13:45:23.921719: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 1.0546 seconds and 153.9 Mi memory
2023-07-05 13:45:23.932333: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 1.0552 seconds and 153.9 Mi memory
2023-07-05 13:45:23.947743: Successfully ran: "cactus_analyseAssembly HG01928.1.sanitized.fa" in 1.0364 seconds and 72.5 Mi memory
2023-07-05 13:45:23.958777: Successfully ran: "cactus_analyseAssembly HG01952.1.sanitized.fa" in 1.022 seconds and 53.9 Mi memory
2023-07-05 13:45:23.961401: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 1.076 seconds and 153.9 Mi memory
2023-07-05 13:45:23.964884: Successfully ran: "cactus_analyseAssembly HG01358.1.sanitized.fa" in 1.0371 seconds and 61.6 Mi memory
2023-07-05 13:45:23.966353: Successfully ran: "cactus_analyseAssembly HG01123.1.sanitized.fa" in 1.0672 seconds and 153.9 Mi memory
2023-07-05 13:45:23.982808: Successfully ran: "cactus_analyseAssembly HG02486.1.sanitized.fa" in 1.0616 seconds and 153.9 Mi memory
2023-07-05 13:45:24.001237: Successfully ran: "cactus_analyseAssembly CHM13.sanitized.fa" in 1.0977 seconds and 154.2 Mi memory
2023-07-05 13:45:24.015490: Successfully ran: "cactus_analyseAssembly HG00741.1.sanitized.fa" in 1.0725 seconds and 153.9 Mi memory
2023-07-05 13:45:24.025512: Successfully ran: "cactus_analyseAssembly HG02559.2.sanitized.fa" in 1.0789 seconds and 153.9 Mi memory
2023-07-05 13:45:24.030530: Successfully ran: "cactus_analyseAssembly HG01071.1.sanitized.fa" in 1.0803 seconds and 153.9 Mi memory
2023-07-05 13:45:24.298666: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/b364/cf10/tmp2rhd5t32/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p"
2023-07-05 13:45:24.335313: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/13a6/8e23/tmpaezc2xk7/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
Got message from job at time 07-05-2023 13:45:24: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 8 Total-length: 78600643 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 13874352 Median-sequence-length: 12096691 Max-sequence-length: 19935143 Min-sequence-length: 884115

Got message from job at time 07-05-2023 13:45:24: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 7 Total-length: 78148666 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19139613 Median-sequence-length: 10025966 Max-sequence-length: 21243810 Min-sequence-length: 2057353

Got message from job at time 07-05-2023 13:45:24: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 5 Total-length: 76313003 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 47794602 Median-sequence-length: 5453459 Max-sequence-length: 47794602 Min-sequence-length: 2058051

2023-07-05 13:45:24.825863: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/5ec9/d6ee/tmpyl2oxmq2/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p"
Got message from job at time 07-05-2023 13:45:24: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 3 Total-length: 77432126 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26364464 Median-sequence-length: 26364464 Max-sequence-length: 33338182 Min-sequence-length: 17729480

2023-07-05 13:45:24.857159: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/e1c9/68a6/tmpmp0qqgde/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
2023-07-05 13:45:24.881547: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/c38a/adbc/tmp6vcnp63s/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p"
2023-07-05 13:45:24.894870: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/f7ab/581d/tmp6_2oog9f/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p"
2023-07-05 13:45:24.905402: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/ce7f/e925/tmpb9tujxei/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p"
2023-07-05 13:45:24.909288: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/ce20/2fb4/tmp6t6swdzm/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:45:24.915878: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/64f0/b983/tmp4f_dkue5/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p"
2023-07-05 13:45:24.916807: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/2457/8bc7/tmpbupzawau/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p"
2023-07-05 13:45:24.917569: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/9943/d145/tmpeo3qnozf/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p"
2023-07-05 13:45:24.921067: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/68e2/f1c7/tmpchlt_wh1/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p"
2023-07-05 13:45:24.923221: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/1372/76fa/tmp4aww9_zn/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p"
2023-07-05 13:45:24.924850: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/266e/5b2d/tmpttu91zja/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
2023-07-05 13:45:24.928882: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/1cc9/14fe/tmpvzmuf5q8/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p"
2023-07-05 13:45:24.932579: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/3f2e/7379/tmpog2dnep4/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p"
2023-07-05 13:45:24.936320: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/3e2d/60ac/tmptcr0i2wk/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-05 13:45:24.938353: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/48e9/dc4a/tmphw1zqi9m/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p"
2023-07-05 13:45:24.938428: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/8c2f/c52d/tmpw7gtyqvi/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p"
2023-07-05 13:45:24.938605: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/e411/a0dd/tmpuya6gio3/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
2023-07-05 13:45:24.940381: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/a9db/f8c1/tmp4wf1es_v/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p"
2023-07-05 13:45:24.952836: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/99fb/bc3f/tmpn8ahjigy/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p"
2023-07-05 13:45:24.957136: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/b9f4/fbda/tmplx_zbbt1/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-05 13:45:25.081855: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/a1a7/6636/tmpazlioj7_/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
2023-07-05 13:45:25.151504: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/8966/ac6b/tmpy0va9alt/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-05 13:45:25.172008: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/fc49/dabe/tmpnvzeklvu/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p"
2023-07-05 13:45:25.180418: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/5607/7b3d/tmp4yz94e9o/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p"
2023-07-05 13:45:25.222041: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/6c73/230d/tmpiqkmcdiu/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:45:25.223404: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/7d46/9516/tmplbk0sq6j/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p"
2023-07-05 13:45:25.233302: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/c7c2/49a1/tmptuz9g9g3/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p"
2023-07-05 13:45:25.235236: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/c711/f63e/tmp5pz45o55/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-05 13:45:25.235761: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/38d0/f3c4/tmpz_fvcw2d/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p"
2023-07-05 13:45:25.236063: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/96ad/0506/tmpyvz2gd8s/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
2023-07-05 13:45:25.239534: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/2878/2da9/tmpt4jo12xj/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p"
2023-07-05 13:45:25.242172: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/9e01/fdb9/tmp6ktq59mu/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p"
2023-07-05 13:45:25.242153: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/cd57/ed34/tmp0ib6vq5b/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:45:25.247450: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/bd1e/bc5a/tmp6_usdey5/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p"
2023-07-05 13:45:25.247831: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/466f/849e/tmp8h4o2ynz/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p"
2023-07-05 13:45:25.249657: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/1c0c/7159/tmpr5f4guub/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p"
2023-07-05 13:45:25.254035: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/0be5/51f2/tmpmp0t6i0_/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p"
2023-07-05 13:45:25.258357: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/af1b/896d/tmpol2cqbc6/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p"
2023-07-05 13:45:25.258588: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/8f04/4df6/tmp3njkk_v4/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p"
2023-07-05 13:45:25.259170: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/0c63/821b/tmp2jan3cl7/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p"
2023-07-05 13:45:25.261469: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/4345/6114/tmpyutnegfb/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-05 13:45:25.261660: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/dae3/fa81/tmpvr1o2cbq/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
2023-07-05 13:45:25.263225: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/5655/e990/tmpc7p0pdmc/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p"
2023-07-05 13:45:25.266785: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/694f/7c5c/tmpnflzirw0/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p"
2023-07-05 13:45:25.266981: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/f143/8567/tmpqe2hnkw7/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p"
2023-07-05 13:45:25.267087: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/e138/4eca/tmp3pu22ywv/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p"
2023-07-05 13:45:25.267185: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/ad40/cb54/tmpzjtn7dce/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
2023-07-05 13:45:25.267989: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/3b63/8e23/tmplsomogfu/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p"
2023-07-05 13:45:25.270166: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/521b/36f2/tmpmvdmti3z/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p"
2023-07-05 13:45:25.270297: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/66cd/b4e1/tmpq69pc5li/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p"
2023-07-05 13:45:25.270522: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/74ea/31b2/tmpwa5lpdwk/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-05 13:45:25.270777: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/66f0/c7ba/tmpri556fgx/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p"
2023-07-05 13:45:25.271539: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/9f8f/a9bf/tmp_pofzn46/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p"
2023-07-05 13:45:25.272049: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/94a8/640c/tmpt7nc3vu1/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p"
2023-07-05 13:45:25.284520: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/89e4/c459/tmpqgxc3vwk/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p"
2023-07-05 13:45:25.352804: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/4d10/362f/tmpjst5m4f5/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p"
2023-07-05 13:45:25.464173: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/ae0b/1947/tmpg3g3ty18/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:45:25.510385: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/1db6/193f/tmpzfd3vv46/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p"
2023-07-05 13:45:25.529468: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/fac0/d509/tmpwyc63j22/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p"
2023-07-05 13:45:25.536464: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/95af/9729/tmpkblhszd9/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p"
2023-07-05 13:45:25.544837: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/bd46/d172/tmp0wkixnt3/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p"
2023-07-05 13:45:25.549272: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/010f/d4cf/tmpckiqqi0r/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p"
2023-07-05 13:45:25.553487: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/953c/1e46/tmpso4ocky0/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p"
2023-07-05 13:45:25.565261: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/e903/003f/tmpk8hxmjsu/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p"
2023-07-05 13:45:25.571991: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/6632/506e/tmpry03wvt1/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-05 13:45:25.573471: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/6dd0/8bd4/tmp5dbaa4ca/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p"
2023-07-05 13:45:25.574283: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/a8f8/18db/tmpwebq1qii/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:45:25.575282: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8763/deeb/tmpswqn5xf6/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p"
2023-07-05 13:45:25.576749: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/f75e/1c0f/tmp32ve7t8_/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p"
2023-07-05 13:45:25.579530: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/f1a7/b15f/tmpov_0dq2h/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
2023-07-05 13:45:25.585433: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/5225/77ea/tmp_si1yb53/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p"
2023-07-05 13:45:25.588829: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/d643/73a4/tmpeb84b_2v/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p"
2023-07-05 13:45:25.590283: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/95c2/ceed/tmpc3wqbham/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
2023-07-05 13:45:25.590329: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/9674/01c2/tmpylnlb5d_/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p"
2023-07-05 13:45:25.591324: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/96c0/307f/tmp8288g17b/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p"
2023-07-05 13:45:25.591809: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8c1e/f970/tmpuzhwi3qw/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p"
2023-07-05 13:45:25.592145: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/0ed1/eef6/tmpg2rut9ir/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p"
2023-07-05 13:45:25.593955: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/bbb3/900b/tmpelj4xovk/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p"
2023-07-05 13:45:25.594809: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/a452/922a/tmphfzzihd4/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
2023-07-05 13:45:25.595115: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c9d1/62c6/tmp5e0mezrs/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p"
2023-07-05 13:45:25.595890: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/b779/c93c/tmpgmx2ss6x/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p"
2023-07-05 13:45:25.596685: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/88cd/348d/tmp_m98s4am/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p"
2023-07-05 13:45:25.598030: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/40bf/4322/tmptll71p7s/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p"
2023-07-05 13:45:25.599742: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/e843/2c22/tmpqwm30q4b/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p"
2023-07-05 13:45:25.600386: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/a682/9544/tmprlwtui4r/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-05 13:45:25.603573: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/3e68/2763/tmp0p6pvqj9/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p"
2023-07-05 13:45:25.604050: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/35b3/aa22/tmp8w4i1679/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p"
2023-07-05 13:45:25.605753: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/30fc/b536/tmp6q6peczf/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p"
2023-07-05 13:45:25.606040: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/ed55/c9c6/tmpkabl3_tu/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p"
2023-07-05 13:45:25.606044: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/d7f2/95e3/tmpchf27kf9/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p"
2023-07-05 13:45:25.606651: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/efc6/7c18/tmpo7zvl6q7/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p"
2023-07-05 13:45:25.608964: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/9e67/b2a5/tmpw86pzpt4/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p"
2023-07-05 13:45:25.609937: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8a66/f81e/tmpc0agbw5o/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
2023-07-05 13:45:25.610088: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/3c9c/c772/tmp7tr_tw5s/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-05 13:45:25.610363: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/47a7/e4bd/tmp924b3zp9/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-05 13:45:25.622371: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/6a64/1632/tmpz3idedtu/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
Got message from job at time 07-05-2023 13:45:25: Assembly stats for HG01071.1: Input-sample: HG01071.1.sanitized.fa Total-sequences: 7 Total-length: 78012090 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19124190 Median-sequence-length: 5758252 Max-sequence-length: 32515685 Min-sequence-length: 39870

Got message from job at time 07-05-2023 13:45:25: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 5 Total-length: 77541806 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16513504 Median-sequence-length: 16301339 Max-sequence-length: 35896223 Min-sequence-length: 48492

2023-07-05 13:45:25.892573: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/e36a/ec04/tmp71t_l8n6/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p"
2023-07-05 13:45:25.893430: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/ddf3/8024/tmpznk13kcy/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p"
Got message from job at time 07-05-2023 13:45:25: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 6 Total-length: 78217735 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16715228 Median-sequence-length: 12096896 Max-sequence-length: 34803293 Min-sequence-length: 1738880

2023-07-05 13:45:26.040750: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/efd4/181e/tmpksq7za__/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p"
2023-07-05 13:45:26.041141: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/fef5/d23f/tmpjxtjnm4y/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
2023-07-05 13:45:26.055307: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/f4fb/c89e/tmpznou3s6w/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p"
2023-07-05 13:45:26.057002: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/9525/7865/tmpg201n98q/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p"
Got message from job at time 07-05-2023 13:45:26: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 6 Total-length: 76986404 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 21948154 Median-sequence-length: 17427863 Max-sequence-length: 33354232 Min-sequence-length: 28110

2023-07-05 13:45:26.149249: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/efc6/7c18/tmpo7zvl6q7/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p'" in 0.5415 seconds and 17.9 Mi memory
2023-07-05 13:45:26.152586: Running the command: "cactus_analyseAssembly HG01928.1.sanitized.fa"
2023-07-05 13:45:26.157519: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/e5bd/5c2d/tmplwobqsxs/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p"
2023-07-05 13:45:26.158816: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/f321/7630/tmpplprf_xj/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p"
2023-07-05 13:45:26.165913: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/b364/cf10/tmp2rhd5t32/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p'" in 1.8658 seconds and 154.0 Mi memory
2023-07-05 13:45:26.167124: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/03d3/62d5/tmpct36ox0g/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p"
2023-07-05 13:45:26.173083: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c9d1/62c6/tmp5e0mezrs/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p'" in 0.5769 seconds and 22.8 Mi memory
2023-07-05 13:45:26.173924: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/6a64/1632/tmpz3idedtu/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p'" in 0.5504 seconds and 4.7 Mi memory
2023-07-05 13:45:26.172841: Running the command: "cactus_analyseAssembly HG03579.1.sanitized.fa"
2023-07-05 13:45:26.176043: Running the command: "cactus_analyseAssembly HG01891.2.sanitized.fa"
2023-07-05 13:45:26.177974: Running the command: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa"
2023-07-05 13:45:26.185963: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/0ed1/eef6/tmpg2rut9ir/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p'" in 0.5924 seconds and 51.9 Mi memory
2023-07-05 13:45:26.189132: Running the command: "cactus_analyseAssembly HG03492.1.sanitized.fa"
2023-07-05 13:45:26.199160: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/a8f8/18db/tmpwebq1qii/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p'" in 0.6235 seconds and 51.9 Mi memory
2023-07-05 13:45:26.199619: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/13a6/8e23/tmpaezc2xk7/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p'" in 1.8632 seconds and 154.0 Mi memory
2023-07-05 13:45:26.201863: Running the command: "cactus_analyseAssembly HG01109.1.sanitized.fa"
2023-07-05 13:45:26.207354: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/e903/003f/tmpk8hxmjsu/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p'" in 0.6407 seconds and 17.9 Mi memory
2023-07-05 13:45:26.207233: Running the command: "cactus_analyseAssembly HG00438.2.sanitized.fa"
2023-07-05 13:45:26.210744: Running the command: "cactus_analyseAssembly HG01952.2.sanitized.fa"
2023-07-05 13:45:26.210960: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/bd46/d172/tmp0wkixnt3/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p'" in 0.6648 seconds and 22.3 Mi memory
2023-07-05 13:45:26.213808: Running the command: "cactus_analyseAssembly HG00735.1.sanitized.fa"
2023-07-05 13:45:26.216335: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8763/deeb/tmpswqn5xf6/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p'" in 0.6398 seconds and 21.5 Mi memory
2023-07-05 13:45:26.219262: Running the command: "cactus_analyseAssembly NA21309.2.sanitized.fa"
2023-07-05 13:45:26.219265: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/a452/922a/tmphfzzihd4/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p'" in 0.6233 seconds and 18.6 Mi memory
2023-07-05 13:45:26.221094: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/40bf/4322/tmptll71p7s/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p'" in 0.6219 seconds and 24.3 Mi memory
2023-07-05 13:45:26.222336: Running the command: "cactus_analyseAssembly HG00438.2.sanitized.fa"
2023-07-05 13:45:26.223205: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/bbb3/900b/tmpelj4xovk/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 0.6279 seconds and 24.0 Mi memory
2023-07-05 13:45:26.223889: Running the command: "cactus_analyseAssembly HG02630.2.sanitized.fa"
2023-07-05 13:45:26.225391: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/9674/01c2/tmpylnlb5d_/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p'" in 0.6338 seconds and 51.9 Mi memory
2023-07-05 13:45:26.225469: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/95af/9729/tmpkblhszd9/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p'" in 0.6876 seconds and 20.0 Mi memory
2023-07-05 13:45:26.226449: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-05 13:45:26.228623: Running the command: "cactus_analyseAssembly HG03579.1.sanitized.fa"
2023-07-05 13:45:26.228644: Running the command: "cactus_analyseAssembly HG00741.1.sanitized.fa"
2023-07-05 13:45:26.228700: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/6dd0/8bd4/tmp5dbaa4ca/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p'" in 0.6539 seconds and 25.1 Mi memory
2023-07-05 13:45:26.230310: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/3c9c/c772/tmp7tr_tw5s/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p'" in 0.6191 seconds and 18.7 Mi memory
2023-07-05 13:45:26.232720: Running the command: "cactus_analyseAssembly HG02486.1.sanitized.fa"
2023-07-05 13:45:26.233202: Running the command: "cactus_analyseAssembly HG01175.2.sanitized.fa"
2023-07-05 13:45:26.234030: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8c1e/f970/tmpuzhwi3qw/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p'" in 0.641 seconds and 51.9 Mi memory
2023-07-05 13:45:26.236812: Running the command: "cactus_analyseAssembly HG02486.2.sanitized.fa"
2023-07-05 13:45:26.239332: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/010f/d4cf/tmpckiqqi0r/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p'" in 0.6887 seconds and 51.9 Mi memory
2023-07-05 13:45:26.242107: Running the command: "cactus_analyseAssembly HG00673.1.sanitized.fa"
2023-07-05 13:45:26.242450: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/6632/506e/tmpry03wvt1/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p'" in 0.6692 seconds and 51.9 Mi memory
2023-07-05 13:45:26.243022: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/96c0/307f/tmp8288g17b/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p'" in 0.6503 seconds and 51.9 Mi memory
2023-07-05 13:45:26.243973: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/ed55/c9c6/tmpkabl3_tu/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p'" in 0.6368 seconds and 51.9 Mi memory
2023-07-05 13:45:26.243976: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/f1a7/b15f/tmpov_0dq2h/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p'" in 0.6631 seconds and 52.9 Mi memory
2023-07-05 13:45:26.245274: Running the command: "cactus_analyseAssembly HG01106.2.sanitized.fa"
2023-07-05 13:45:26.245644: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/30fc/b536/tmp6q6peczf/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p'" in 0.6387 seconds and 21.2 Mi memory
2023-07-05 13:45:26.245808: Running the command: "cactus_analyseAssembly HG00673.2.sanitized.fa"
2023-07-05 13:45:26.246421: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/d7f2/95e3/tmpchf27kf9/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p'" in 0.6393 seconds and 51.9 Mi memory
2023-07-05 13:45:26.246787: Running the command: "cactus_analyseAssembly HG02145.2.sanitized.fa"
2023-07-05 13:45:26.246828: Running the command: "cactus_analyseAssembly HG01123.2.sanitized.fa"
2023-07-05 13:45:26.248929: Running the command: "cactus_analyseAssembly HG01361.1.sanitized.fa"
2023-07-05 13:45:26.249466: Running the command: "cactus_analyseAssembly HG01978.2.sanitized.fa"
2023-07-05 13:45:26.249518: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/35b3/aa22/tmp8w4i1679/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p'" in 0.6444 seconds and 18.4 Mi memory
2023-07-05 13:45:26.249633: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/ae0b/1947/tmpg3g3ty18/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 0.7841 seconds and 56.7 Mi memory
2023-07-05 13:45:26.250822: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/b779/c93c/tmpgmx2ss6x/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p'" in 0.6536 seconds and 17.9 Mi memory
2023-07-05 13:45:26.252048: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/a682/9544/tmprlwtui4r/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p'" in 0.6505 seconds and 17.9 Mi memory
2023-07-05 13:45:26.252055: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/5225/77ea/tmp_si1yb53/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p'" in 0.6653 seconds and 51.9 Mi memory
2023-07-05 13:45:26.252647: Running the command: "cactus_analyseAssembly HG01258.2.sanitized.fa"
2023-07-05 13:45:26.252689: Running the command: "cactus_analyseAssembly GRCh38.sanitized.fa"
2023-07-05 13:45:26.253847: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/47a7/e4bd/tmp924b3zp9/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p'" in 0.6424 seconds and 51.9 Mi memory
2023-07-05 13:45:26.254205: Running the command: "cactus_analyseAssembly HG01109.2.sanitized.fa"
2023-07-05 13:45:26.254774: Running the command: "cactus_analyseAssembly HG03540.1.sanitized.fa"
2023-07-05 13:45:26.255186: Running the command: "cactus_analyseAssembly HG01258.1.sanitized.fa"
2023-07-05 13:45:26.255224: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/f75e/1c0f/tmp32ve7t8_/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p'" in 0.6771 seconds and 52.4 Mi memory
2023-07-05 13:45:26.256649: Running the command: "cactus_analyseAssembly HG00621.1.sanitized.fa"
2023-07-05 13:45:26.257943: Running the command: "cactus_analyseAssembly HG02559.1.sanitized.fa"
2023-07-05 13:45:26.259853: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/3e68/2763/tmp0p6pvqj9/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p'" in 0.6551 seconds and 51.9 Mi memory
2023-07-05 13:45:26.261044: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/e843/2c22/tmpqwm30q4b/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p'" in 0.6601 seconds and 51.9 Mi memory
2023-07-05 13:45:26.263005: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/9e67/b2a5/tmpw86pzpt4/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p'" in 0.6529 seconds and 51.9 Mi memory
2023-07-05 13:45:26.263175: Running the command: "cactus_analyseAssembly HG02886.1.sanitized.fa"
2023-07-05 13:45:26.263765: Running the command: "cactus_analyseAssembly HG01952.1.sanitized.fa"
2023-07-05 13:45:26.263863: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/953c/1e46/tmpso4ocky0/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p'" in 0.709 seconds and 24.1 Mi memory
2023-07-05 13:45:26.265125: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/8a66/f81e/tmpc0agbw5o/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p'" in 0.654 seconds and 51.9 Mi memory
2023-07-05 13:45:26.265970: Running the command: "cactus_analyseAssembly HG02055.2.sanitized.fa"
2023-07-05 13:45:26.266869: Running the command: "cactus_analyseAssembly NA21309.1.sanitized.fa"
2023-07-05 13:45:26.267997: Running the command: "cactus_analyseAssembly HG00621.2.sanitized.fa"
2023-07-05 13:45:26.270942: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/95c2/ceed/tmpc3wqbham/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p'" in 0.6794 seconds and 51.9 Mi memory
2023-07-05 13:45:26.272660: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/88cd/348d/tmp_m98s4am/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p'" in 0.6747 seconds and 51.9 Mi memory
2023-07-05 13:45:26.273769: Running the command: "cactus_analyseAssembly HG03486.1.sanitized.fa"
2023-07-05 13:45:26.274083: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/fac0/d509/tmpwyc63j22/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p'" in 0.7434 seconds and 51.9 Mi memory
2023-07-05 13:45:26.275469: Running the command: "cactus_analyseAssembly HG02559.2.sanitized.fa"
2023-07-05 13:45:26.276104: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/d643/73a4/tmpeb84b_2v/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p'" in 0.6856 seconds and 51.9 Mi memory
2023-07-05 13:45:26.276805: Running the command: "cactus_analyseAssembly HG02148.2.sanitized.fa"
2023-07-05 13:45:26.305675: Running the command: "cactus_analyseAssembly HG02257.1.sanitized.fa"
Got message from job at time 07-05-2023 13:45:26: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 2 Total-length: 77609082 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 55301244 Median-sequence-length: 55301244 Max-sequence-length: 55301244 Min-sequence-length: 22307838

2023-07-05 13:45:26.449699: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/1db6/193f/tmpzfd3vv46/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p'" in 0.9383 seconds and 24.9 Mi memory
2023-07-05 13:45:26.452025: Running the command: "cactus_analyseAssembly HG02109.1.sanitized.fa"
2023-07-05 13:45:26.466938: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/601b/09c2/tmpe33c_ycm/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p"
2023-07-05 13:45:26.538130: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/cfe5/728c/tmpt_1s01cp/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p"
2023-07-05 13:45:26.548391: Successfully ran: "cactus_analyseAssembly HG01928.1.sanitized.fa" in 0.3948 seconds and 17.8 Mi memory
2023-07-05 13:45:26.550027: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/60f3/ca1c/tmp0v5dzh75/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
2023-07-05 13:45:26.562573: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/6ddd/95ed/tmpi9jar0jk/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
2023-07-05 13:45:26.564334: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/b5da/690f/tmpyp5u_klq/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p"
2023-07-05 13:45:26.564390: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/a3c6/422f/tmp9ihe15xx/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p"
2023-07-05 13:45:26.571349: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/7260/7d66/tmp5o5b9cvo/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p"
2023-07-05 13:45:26.575064: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/e0bb/7cf2/tmpw176pvyo/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p"
2023-07-05 13:45:26.576618: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/5847/7829/tmppatxu2i8/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p"
2023-07-05 13:45:26.582577: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/961c/c84d/tmp0bwy9hlx/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-05 13:45:26.585302: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/cdf2/ae69/tmpx2dp8mmu/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p"
2023-07-05 13:45:26.586053: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/ea1f/251d/tmp6452eq9y/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p"
2023-07-05 13:45:26.594046: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/fad1/483b/tmpr3hgz1bg/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:45:26.595801: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/4c6a/1614/tmp6tvpky06/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p"
2023-07-05 13:45:26.595865: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/47e5/27f4/tmpvmnkpu_b/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p"
2023-07-05 13:45:26.598806: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/a9ea/f7ce/tmpo2fvcmii/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p"
2023-07-05 13:45:26.600715: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/1b44/2081/tmpa3to3zrc/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p"
2023-07-05 13:45:26.601495: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/e639/fcb0/tmphovpu85e/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p"
2023-07-05 13:45:26.604369: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/bdb9/61aa/tmpq5qh0083/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
2023-07-05 13:45:26.608148: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/cb3a/93bf/tmpnttbfmsz/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p"
2023-07-05 13:45:26.608966: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/af76/87f6/tmpzqbt3nsr/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p"
2023-07-05 13:45:26.609802: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/3714/7171/tmpjjd2n5j6/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p"
2023-07-05 13:45:26.612821: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/b661/dc91/tmp8_k5s4_3/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p"
2023-07-05 13:45:26.613298: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/4ef0/00e1/tmp87rxavo6/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-05 13:45:26.616085: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/6748/eb15/tmpz4amg2dd/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p"
2023-07-05 13:45:26.616747: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/ec71/90d3/tmpwfqo5sgd/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p"
2023-07-05 13:45:26.616921: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/899d/2dad/tmp_7b8dtog/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p"
2023-07-05 13:45:26.618231: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/0c3c/5be7/tmpoaz_gxyu/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p"
2023-07-05 13:45:26.619299: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/7e97/e686/tmp4l3lkxv2/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p"
2023-07-05 13:45:26.623195: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/ed98/119d/tmpcxsdf4az/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p"
2023-07-05 13:45:26.624644: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/fd33/085c/tmp82kdccj5/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p"
2023-07-05 13:45:26.626083: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/a0b8/4bd2/tmprk8au70x/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p"
2023-07-05 13:45:26.627705: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/f42f/e4d3/tmp47d6e4oe/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p"
2023-07-05 13:45:26.628086: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/d41a/03a1/tmpw2xr5f9v/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p"
2023-07-05 13:45:26.629733: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/930c/e898/tmpzkak1_xz/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p"
2023-07-05 13:45:26.631043: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/c622/6b39/tmpsqtoptos/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:45:26.631632: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/50d3/0339/tmp_9zd2u00/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p"
2023-07-05 13:45:26.631764: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/d467/ab2c/tmp5v300x0c/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p"
2023-07-05 13:45:26.632575: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/99b8/3b4e/tmpckzbbqwi/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p"
2023-07-05 13:45:26.632637: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/2d9a/5116/tmpryw88io6/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p"
2023-07-05 13:45:26.633650: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/ed6c/e47c/tmpjx0jvt9a/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p"
2023-07-05 13:45:26.634390: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/9d0d/ab30/tmpy_2475wn/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p"
2023-07-05 13:45:26.634383: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/da8b/380d/tmprt1ald8b/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p"
2023-07-05 13:45:26.634525: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/4c8f/1f2a/tmpy95u48zu/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p"
2023-07-05 13:45:26.634737: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/6cda/47da/tmp45qv_t2v/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p"
2023-07-05 13:45:26.634685: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/1da1/4dd1/tmpv77lon20/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p"
2023-07-05 13:45:26.635199: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/90b3/99ca/tmp3qpx2eic/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p"
2023-07-05 13:45:26.635503: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/41f5/e437/tmpxjgajufx/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
2023-07-05 13:45:26.635603: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/02a7/f567/tmpujjc_15c/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-05 13:45:26.635675: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/898f/b9d5/tmp9d47ncgs/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p"
2023-07-05 13:45:26.635836: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/a0fb/716e/tmp4q2bfk6e/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p"
2023-07-05 13:45:26.636920: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/c021/8ecb/tmpzv1hpb7e/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p"
2023-07-05 13:45:26.636890: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/8e4c/ecbd/tmpr105t_og/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p"
2023-07-05 13:45:26.637090: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/8545/d3ad/tmp01dcm4vt/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p"
2023-07-05 13:45:26.638511: Successfully ran: "cactus_analyseAssembly HG01952.2.sanitized.fa" in 0.4269 seconds and 17.8 Mi memory
2023-07-05 13:45:26.638393: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/07c2/2d5a/tmpuv_5intl/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p"
2023-07-05 13:45:26.638476: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/0c1e/c130/tmpa_oip1mp/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p"
2023-07-05 13:45:26.638651: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/ecba/5a06/tmp7z1godyt/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-05 13:45:26.639075: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/df37/50aa/tmpupf83ehp/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
2023-07-05 13:45:26.639511: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/3dac/667c/tmp6vn532k6/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p"
2023-07-05 13:45:26.639929: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/6453/5a34/tmpnxo93h2g/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p"
2023-07-05 13:45:26.642398: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/cc09/d6c3/tmp6wntceef/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
2023-07-05 13:45:26.642533: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/ec02/c5e2/tmpz8so52r4/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p"
2023-07-05 13:45:26.642606: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/0bd5/ae46/tmpilqumn5t/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p"
2023-07-05 13:45:26.642614: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/737b/b3da/tmpqpi0dq5q/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p"
2023-07-05 13:45:26.642797: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/5a0d/cfd4/tmpr4mlgcir/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p"
2023-07-05 13:45:26.643632: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/e72c/82bf/tmpv4lskej1/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p"
2023-07-05 13:45:26.644072: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/f79d/6937/tmp1_myuoij/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p"
2023-07-05 13:45:26.644213: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/61de/ecdb/tmpvq2lqods/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p"
2023-07-05 13:45:26.644269: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/92f0/9cb4/tmp0e3om9gp/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p"
2023-07-05 13:45:26.646115: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/c0f1/d014/tmpg_9hrt6n/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p"
2023-07-05 13:45:26.646105: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/7377/9e9c/tmppa0q8ssk/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-05 13:45:26.649050: Successfully ran: "cactus_analyseAssembly HG00438.2.sanitized.fa" in 0.4258 seconds and 18.6 Mi memory
2023-07-05 13:45:26.648454: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/4183/3ece/tmppnel9rfk/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p"
2023-07-05 13:45:26.649986: Successfully ran: "cactus_analyseAssembly NA21309.2.sanitized.fa" in 0.4298 seconds and 21.4 Mi memory
2023-07-05 13:45:26.649066: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/91c0/fb52/tmp31ccs0cf/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p"
2023-07-05 13:45:26.650849: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/965e/09b8/tmpm9q7es1y/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-05 13:45:26.652931: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/a3b1/6739/tmpakkbak9n/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p"
2023-07-05 13:45:26.653496: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/e188/a3ae/tmpjfkw3mzw/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:45:26.654849: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 0.4301 seconds and 24.3 Mi memory
2023-07-05 13:45:26.656829: Successfully ran: "cactus_analyseAssembly HG02486.1.sanitized.fa" in 0.4231 seconds and 25.0 Mi memory
2023-07-05 13:45:26.655951: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/6608/741f/tmpa0q11h0y/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p"
2023-07-05 13:45:26.656128: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/475e/30f2/tmplpd23t1n/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:45:26.656951: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/d6c7/9fd6/tmpzfyrdkig/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p"
2023-07-05 13:45:26.657810: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/d01d/3dfe/tmpltdu4_zl/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p"
2023-07-05 13:45:26.658272: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/85df/85e2/tmp046xmloj/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p"
2023-07-05 13:45:26.659760: Successfully ran: "cactus_analyseAssembly HG02723.1.sanitized.fa" in 0.4326 seconds and 24.0 Mi memory
2023-07-05 13:45:26.660910: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/bbc1/0861/tmp3d6euqo9/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p"
2023-07-05 13:45:26.662692: Successfully ran: "cactus_analyseAssembly HG01175.2.sanitized.fa" in 0.4286 seconds and 18.6 Mi memory
2023-07-05 13:45:26.662233: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/e965/d8f7/tmpjvoa_zer/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:45:26.663450: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/7a77/2a11/tmpy7yoqqb7/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p"
2023-07-05 13:45:26.663538: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/452c/a4fb/tmpr__aotlf/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p"
2023-07-05 13:45:26.663510: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/7cd4/c83e/tmpcx6l1boi/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p"
2023-07-05 13:45:26.665163: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/7758/721a/tmphz40l9m8/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-05 13:45:26.665598: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/5d1b/bebb/tmpmsuu4gpj/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p"
2023-07-05 13:45:26.665866: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/f730/1db2/tmpfhxmh9r6/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p"
2023-07-05 13:45:26.666833: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/d479/de89/tmpjca1v5hu/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p"
2023-07-05 13:45:26.668467: Successfully ran: "cactus_analyseAssembly HG03579.1.sanitized.fa" in 0.439 seconds and 51.9 Mi memory
2023-07-05 13:45:26.667301: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/e7b7/a12c/tmp_d93oa25/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p"
2023-07-05 13:45:26.668406: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/8051/6ce3/tmpv3il4310/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-05 13:45:26.668787: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/9f16/753e/tmpjaibs96n/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p"
2023-07-05 13:45:26.668757: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/7415/3c54/tmpemf04i3r/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p"
2023-07-05 13:45:26.669343: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/f458/4161/tmpmgazcjm_/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p"
2023-07-05 13:45:26.670169: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/719c/7faf/tmp6_rqmvh4/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p"
2023-07-05 13:45:26.671792: Successfully ran: "cactus_analyseAssembly HG02486.2.sanitized.fa" in 0.4341 seconds and 51.9 Mi memory
2023-07-05 13:45:26.670735: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/63c2/c3a1/tmp5v2_r2ho/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p"
2023-07-05 13:45:26.670766: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/1275/b4b1/tmpjzxfgvie/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p"
2023-07-05 13:45:26.671290: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/7a5e/50ab/tmp37s3mbq5/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
2023-07-05 13:45:26.672716: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/d68e/3463/tmpmzbn7lpw/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p"
2023-07-05 13:45:26.673594: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/2072/bec0/tmpe3x3obv_/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
2023-07-05 13:45:26.676959: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/76e9/93cd/tmptf7idr36/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p"
2023-07-05 13:45:26.682559: Successfully ran: "cactus_analyseAssembly HG01361.1.sanitized.fa" in 0.4327 seconds and 21.2 Mi memory
2023-07-05 13:45:26.682865: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 0.4295 seconds and 18.3 Mi memory
2023-07-05 13:45:26.681945: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/352f/5c6a/tmpruuo_29t/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p"
2023-07-05 13:45:26.683579: Successfully ran: "cactus_analyseAssembly HG01258.1.sanitized.fa" in 0.4277 seconds and 17.8 Mi memory
2023-07-05 13:45:26.687739: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 0.4341 seconds and 56.8 Mi memory
2023-07-05 13:45:26.690039: Successfully ran: "cactus_analyseAssembly HG00741.1.sanitized.fa" in 0.4604 seconds and 19.9 Mi memory
2023-07-05 13:45:26.690233: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 0.4442 seconds and 51.9 Mi memory
2023-07-05 13:45:26.690677: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 0.4357 seconds and 17.8 Mi memory
2023-07-05 13:45:26.691291: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 0.4438 seconds and 51.9 Mi memory
2023-07-05 13:45:26.694256: Successfully ran: "cactus_analyseAssembly HG01123.2.sanitized.fa" in 0.4465 seconds and 52.9 Mi memory
2023-07-05 13:45:26.695747: Successfully ran: "cactus_analyseAssembly HG01978.2.sanitized.fa" in 0.4457 seconds and 51.9 Mi memory
2023-07-05 13:45:26.695962: Successfully ran: "cactus_analyseAssembly NA21309.1.sanitized.fa" in 0.4284 seconds and 24.0 Mi memory
2023-07-05 13:45:26.698344: Successfully ran: "cactus_analyseAssembly HG03540.1.sanitized.fa" in 0.4426 seconds and 51.9 Mi memory
2023-07-05 13:45:26.699529: Successfully ran: "cactus_analyseAssembly HG01891.2.sanitized.fa" in 0.5226 seconds and 22.7 Mi memory
2023-07-05 13:45:26.699679: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 0.453 seconds and 51.9 Mi memory
2023-07-05 13:45:26.706236: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 0.449 seconds and 51.9 Mi memory
2023-07-05 13:45:26.706592: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 0.429 seconds and 51.9 Mi memory
2023-07-05 13:45:26.706536: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 0.4636 seconds and 51.9 Mi memory
2023-07-05 13:45:26.707322: Successfully ran: "cactus_analyseAssembly HG01952.1.sanitized.fa" in 0.4427 seconds and 51.9 Mi memory
2023-07-05 13:45:26.710873: Successfully ran: "cactus_analyseAssembly HG02886.1.sanitized.fa" in 0.447 seconds and 51.9 Mi memory
2023-07-05 13:45:26.714820: Successfully ran: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa" in 0.5361 seconds and 4.6 Mi memory
2023-07-05 13:45:26.715183: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 0.4464 seconds and 51.9 Mi memory
2023-07-05 13:45:26.716177: Successfully ran: "cactus_analyseAssembly HG03486.1.sanitized.fa" in 0.4416 seconds and 51.9 Mi memory
2023-07-05 13:45:26.720208: Successfully ran: "cactus_analyseAssembly HG02559.1.sanitized.fa" in 0.4614 seconds and 52.4 Mi memory
2023-07-05 13:45:26.721484: Successfully ran: "cactus_analyseAssembly HG02055.2.sanitized.fa" in 0.4548 seconds and 51.9 Mi memory
2023-07-05 13:45:26.728465: Successfully ran: "cactus_analyseAssembly HG02559.2.sanitized.fa" in 0.4522 seconds and 51.9 Mi memory
2023-07-05 13:45:26.734354: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 0.5441 seconds and 51.9 Mi memory
2023-07-05 13:45:26.736755: Successfully ran: "cactus_analyseAssembly HG00735.1.sanitized.fa" in 0.5222 seconds and 22.2 Mi memory
2023-07-05 13:45:26.741258: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 0.5386 seconds and 51.9 Mi memory
2023-07-05 13:45:26.750549: Successfully ran: "cactus_analyseAssembly HG02257.1.sanitized.fa" in 0.444 seconds and 51.9 Mi memory
2023-07-05 13:45:26.810133: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/bb14/4c76/tmputrck87b/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p"
2023-07-05 13:45:26.840007: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/c5e1/127f/tmp8dq41lx3/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p"
2023-07-05 13:45:26.843214: Successfully ran: "cactus_analyseAssembly HG02109.1.sanitized.fa" in 0.3903 seconds and 24.8 Mi memory
2023-07-05 13:45:26.846870: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/f826/83be/tmp1tn7lhmt/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p"
2023-07-05 13:45:26.856611: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/fe46/0fc1/tmpkr_q0wsa/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p"
2023-07-05 13:45:26.863990: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/d51d/b6f0/tmpl5nwgc2u/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p"
2023-07-05 13:45:26.869566: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/6b1c/f3eb/tmpft6c1svs/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p"
2023-07-05 13:45:26.880453: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/9c0e/2853/tmpex0de80p/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p"
2023-07-05 13:45:26.889313: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/8146/84ac/tmpu4i6pbbn/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p"
2023-07-05 13:45:26.896036: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/0476/8475/tmp7ookd6ti/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-05 13:45:26.897146: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/c4d1/1c3b/tmpgdjwmll0/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p"
2023-07-05 13:45:26.904943: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/75dc/92a6/tmp777wwotq/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p"
2023-07-05 13:45:26.908550: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/b0ec/ed82/tmpdpijnbog/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-05 13:45:26.913725: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/c332/ba37/tmpjs9cs1qc/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p"
2023-07-05 13:45:26.915351: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/94f3/ba8c/tmp_xtx4a8o/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
2023-07-05 13:45:26.918375: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/5609/4cca/tmp1mld7nfn/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p"
2023-07-05 13:45:26.918642: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/0117/45bf/tmpd4cjxz5t/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p"
2023-07-05 13:45:26.921503: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/9e43/bdf8/tmpyqtgn37m/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p"
2023-07-05 13:45:26.933842: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/df64/d476/tmpcrnso605/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p"
2023-07-05 13:45:26.934990: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/8060/cd36/tmp62buqgyl/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p"
2023-07-05 13:45:26.941269: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/ae86/b822/tmpvbsoee0b/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p"
2023-07-05 13:45:26.944578: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/98f5/20a7/tmp5nutwjnd/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p"
2023-07-05 13:45:26.957869: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/704a/604d/tmp5tglzz4w/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-05 13:45:26.996053: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/d498/99d9/tmp0odaebd5/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p"
2023-07-05 13:45:26.998223: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/f2ae/3830/tmpri4h7jxo/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:45:27.026369: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ea9c/6833/tmpo0mf18gr/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p"
2023-07-05 13:45:27.040772: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/c8a3/ec44/tmpq8tqp30j/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p"
2023-07-05 13:45:27.080679: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/fe26/55a4/tmp64uvj7k_/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p"
2023-07-05 13:45:27.085475: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/acf1/a114/tmppryfbrc1/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p"
2023-07-05 13:45:27.103591: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/a1a7/6636/tmpazlioj7_/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p'" in 2.0204 seconds and 4.5 Mi memory
2023-07-05 13:45:27.113878: Running the command: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa"
2023-07-05 13:45:27.139937: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/5655/e990/tmpc7p0pdmc/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p'" in 1.8753 seconds and 71.4 Mi memory
2023-07-05 13:45:27.146025: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/bd1e/bc5a/tmp6_usdey5/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p'" in 1.8971 seconds and 72.5 Mi memory
2023-07-05 13:45:27.148293: Running the command: "cactus_analyseAssembly HG02559.2.sanitized.fa"
2023-07-05 13:45:27.153939: Running the command: "cactus_analyseAssembly HG02630.2.sanitized.fa"
2023-07-05 13:45:27.161400: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/0be5/51f2/tmpmp0t6i0_/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p'" in 1.906 seconds and 51.9 Mi memory
2023-07-05 13:45:27.166929: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/0c63/821b/tmp2jan3cl7/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p'" in 1.9063 seconds and 69.4 Mi memory
2023-07-05 13:45:27.169601: Running the command: "cactus_analyseAssembly HG02145.2.sanitized.fa"
2023-07-05 13:45:27.174953: Running the command: "cactus_analyseAssembly HG01361.1.sanitized.fa"
2023-07-05 13:45:27.178552: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/4345/6114/tmpyutnegfb/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p'" in 1.9156 seconds and 52.7 Mi memory
2023-07-05 13:45:27.186618: Running the command: "cactus_analyseAssembly HG01175.2.sanitized.fa"
Got message from job at time 07-05-2023 13:45:27: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 8 Total-length: 80755776 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19036863 Median-sequence-length: 12105285 Max-sequence-length: 21229698 Min-sequence-length: 22098

2023-07-05 13:45:27.193775: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/4d10/362f/tmpjst5m4f5/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p'" in 1.8397 seconds and 51.9 Mi memory
2023-07-05 13:45:27.193432: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/dae3/fa81/tmpvr1o2cbq/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p'" in 1.9305 seconds and 51.9 Mi memory
2023-07-05 13:45:27.194603: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/ad40/cb54/tmpzjtn7dce/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p'" in 1.9263 seconds and 51.9 Mi memory
2023-07-05 13:45:27.195787: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/521b/36f2/tmpmvdmti3z/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p'" in 1.9244 seconds and 51.9 Mi memory
2023-07-05 13:45:27.202043: Running the command: "cactus_analyseAssembly NA20129.2.sanitized.fa"
2023-07-05 13:45:27.201784: Running the command: "cactus_analyseAssembly HG03486.1.sanitized.fa"
2023-07-05 13:45:27.202952: Running the command: "cactus_analyseAssembly HG01123.2.sanitized.fa"
2023-07-05 13:45:27.204067: Running the command: "cactus_analyseAssembly HG03492.2.sanitized.fa"
2023-07-05 13:45:27.205389: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/466f/849e/tmp8h4o2ynz/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p'" in 1.956 seconds and 154.0 Mi memory
2023-07-05 13:45:27.207253: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/66cd/b4e1/tmpq69pc5li/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p'" in 1.9356 seconds and 74.1 Mi memory
2023-07-05 13:45:27.208927: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/e1c9/68a6/tmpmp0qqgde/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p'" in 2.3504 seconds and 51.9 Mi memory
2023-07-05 13:45:27.213537: Running the command: "cactus_analyseAssembly HG02622.2.sanitized.fa"
2023-07-05 13:45:27.215558: Running the command: "cactus_analyseAssembly HG00673.1.sanitized.fa"
2023-07-05 13:45:27.216168: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/9f8f/a9bf/tmp_pofzn46/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p'" in 1.9434 seconds and 51.9 Mi memory
2023-07-05 13:45:27.218405: Running the command: "cactus_analyseAssembly HG02109.2.sanitized.fa"
2023-07-05 13:45:27.222933: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/74ea/31b2/tmpwa5lpdwk/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p'" in 1.9512 seconds and 61.4 Mi memory
2023-07-05 13:45:27.224299: Running the command: "cactus_analyseAssembly HG02723.2.sanitized.fa"
2023-07-05 13:45:27.224254: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/66f0/c7ba/tmpri556fgx/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 1.9521 seconds and 51.9 Mi memory
2023-07-05 13:45:27.226338: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/a9db/f8c1/tmp4wf1es_v/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p'" in 2.2848 seconds and 58.9 Mi memory
2023-07-05 13:45:27.227669: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/3b63/8e23/tmplsomogfu/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p'" in 1.9585 seconds and 154.0 Mi memory
2023-07-05 13:45:27.228008: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/1cc9/14fe/tmpvzmuf5q8/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p'" in 2.2977 seconds and 51.9 Mi memory
2023-07-05 13:45:27.231681: Running the command: "cactus_analyseAssembly HG00621.1.sanitized.fa"
2023-07-05 13:45:27.231832: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/94a8/640c/tmpt7nc3vu1/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p'" in 1.9585 seconds and 51.9 Mi memory
2023-07-05 13:45:27.232873: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-05 13:45:27.233949: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/694f/7c5c/tmpnflzirw0/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p'" in 1.966 seconds and 154.0 Mi memory
2023-07-05 13:45:27.235542: Running the command: "cactus_analyseAssembly HG03098.1.sanitized.fa"
2023-07-05 13:45:27.236423: Running the command: "cactus_analyseAssembly HG01175.1.sanitized.fa"
2023-07-05 13:45:27.236463: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/38d0/f3c4/tmpz_fvcw2d/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p'" in 1.9992 seconds and 154.0 Mi memory
2023-07-05 13:45:27.236596: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/48e9/dc4a/tmphw1zqi9m/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p'" in 2.2969 seconds and 51.9 Mi memory
2023-07-05 13:45:27.237338: Running the command: "cactus_analyseAssembly HG03492.1.sanitized.fa"
2023-07-05 13:45:27.240561: Running the command: "cactus_analyseAssembly NA20129.2.sanitized.fa"
2023-07-05 13:45:27.242557: Running the command: "cactus_analyseAssembly HG02486.1.sanitized.fa"
2023-07-05 13:45:27.244675: Running the command: "cactus_analyseAssembly HG01361.2.sanitized.fa"
2023-07-05 13:45:27.246121: Running the command: "cactus_analyseAssembly NA18906.2.sanitized.fa"
2023-07-05 13:45:27.246930: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/266e/5b2d/tmpttu91zja/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p'" in 2.3206 seconds and 51.9 Mi memory
2023-07-05 13:45:27.247032: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/af1b/896d/tmpol2cqbc6/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p'" in 1.9872 seconds and 154.0 Mi memory
2023-07-05 13:45:27.255086: Running the command: "cactus_analyseAssembly HG02559.1.sanitized.fa"
2023-07-05 13:45:27.255674: Running the command: "cactus_analyseAssembly HG03486.1.sanitized.fa"
2023-07-05 13:45:27.255736: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/f143/8567/tmpqe2hnkw7/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p'" in 1.9876 seconds and 170.2 Mi memory
2023-07-05 13:45:27.257641: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/cd57/ed34/tmp0ib6vq5b/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 2.014 seconds and 174.0 Mi memory
2023-07-05 13:45:27.263640: Running the command: "cactus_analyseAssembly HG02717.2.sanitized.fa"
2023-07-05 13:45:27.265586: Running the command: "cactus_analyseAssembly GRCh38.sanitized.fa"
2023-07-05 13:45:27.268067: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/68e2/f1c7/tmpchlt_wh1/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p'" in 2.3456 seconds and 59.9 Mi memory
Got message from job at time 07-05-2023 13:45:27: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 4 Total-length: 78021073 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41815071 Median-sequence-length: 15644780 Max-sequence-length: 41815071 Min-sequence-length: 9861424

2023-07-05 13:45:27.275570: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/8f04/4df6/tmp3njkk_v4/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p'" in 2.0156 seconds and 154.0 Mi memory
2023-07-05 13:45:27.276125: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/3f2e/7379/tmpog2dnep4/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p'" in 2.3422 seconds and 154.0 Mi memory
2023-07-05 13:45:27.276259: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/b9f4/fbda/tmplx_zbbt1/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p'" in 2.318 seconds and 154.0 Mi memory
2023-07-05 13:45:27.276496: Running the command: "cactus_analyseAssembly HG01243.1.sanitized.fa"
2023-07-05 13:45:27.281972: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/e138/4eca/tmp3pu22ywv/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p'" in 2.0137 seconds and 154.0 Mi memory
2023-07-05 13:45:27.283596: Running the command: "cactus_analyseAssembly HG03579.2.sanitized.fa"
2023-07-05 13:45:27.284665: Running the command: "cactus_analyseAssembly HG01071.2.sanitized.fa"
2023-07-05 13:45:27.285320: Running the command: "cactus_analyseAssembly HG00733.1.sanitized.fa"
2023-07-05 13:45:27.285418: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/8c2f/c52d/tmpw7gtyqvi/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p'" in 2.3458 seconds and 65.0 Mi memory
2023-07-05 13:45:27.286431: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/9943/d145/tmpeo3qnozf/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p'" in 2.3677 seconds and 153.9 Mi memory
2023-07-05 13:45:27.286949: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/f7ab/581d/tmp6_2oog9f/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p'" in 2.3907 seconds and 51.9 Mi memory
2023-07-05 13:45:27.290020: Running the command: "cactus_analyseAssembly HG02622.1.sanitized.fa"
2023-07-05 13:45:27.293570: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/1c0c/7159/tmpr5f4guub/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p'" in 2.0428 seconds and 51.9 Mi memory
2023-07-05 13:45:27.294304: Running the command: "cactus_analyseAssembly HG00673.1.sanitized.fa"
2023-07-05 13:45:27.294368: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/5ec9/d6ee/tmpyl2oxmq2/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p'" in 2.4671 seconds and 154.0 Mi memory
2023-07-05 13:45:27.295704: Running the command: "cactus_analyseAssembly HG02630.2.sanitized.fa"
2023-07-05 13:45:27.295887: Running the command: "cactus_analyseAssembly HG01952.2.sanitized.fa"
2023-07-05 13:45:27.301141: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/3e2d/60ac/tmptcr0i2wk/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p'" in 2.3637 seconds and 154.0 Mi memory
2023-07-05 13:45:27.301397: Running the command: "cactus_analyseAssembly HG02572.2.sanitized.fa"
2023-07-05 13:45:27.301610: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/ce7f/e925/tmpb9tujxei/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p'" in 2.3942 seconds and 51.8 Mi memory
2023-07-05 13:45:27.302904: Running the command: "cactus_analyseAssembly HG01358.2.sanitized.fa"
2023-07-05 13:45:27.304931: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/9e01/fdb9/tmp6ktq59mu/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p'" in 2.0616 seconds and 66.4 Mi memory
2023-07-05 13:45:27.306054: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/96ad/0506/tmpyvz2gd8s/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p'" in 2.0688 seconds and 51.9 Mi memory
2023-07-05 13:45:27.309775: Running the command: "cactus_analyseAssembly HG01106.2.sanitized.fa"
2023-07-05 13:45:27.311854: Running the command: "cactus_analyseAssembly HG01109.2.sanitized.fa"
2023-07-05 13:45:27.313896: Running the command: "cactus_analyseAssembly HG02055.2.sanitized.fa"
2023-07-05 13:45:27.315174: Running the command: "cactus_analyseAssembly HG02109.2.sanitized.fa"
2023-07-05 13:45:27.319264: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/1372/76fa/tmp4aww9_zn/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p'" in 2.3949 seconds and 154.0 Mi memory
2023-07-05 13:45:27.319619: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/ce20/2fb4/tmp6t6swdzm/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 2.4089 seconds and 163.9 Mi memory
2023-07-05 13:45:27.323405: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/2457/8bc7/tmpbupzawau/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p'" in 2.4053 seconds and 51.9 Mi memory
2023-07-05 13:45:27.327706: Running the command: "cactus_analyseAssembly NA18906.1.sanitized.fa"
2023-07-05 13:45:27.328433: Running the command: "cactus_analyseAssembly GRCh38.sanitized.fa"
2023-07-05 13:45:27.331621: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/89e4/c459/tmpqgxc3vwk/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p'" in 2.0459 seconds and 57.6 Mi memory
2023-07-05 13:45:27.332169: Running the command: "cactus_analyseAssembly HG02818.1.sanitized.fa"
2023-07-05 13:45:27.337618: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/c7c2/49a1/tmptuz9g9g3/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p'" in 2.1032 seconds and 56.3 Mi memory
2023-07-05 13:45:27.337914: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/6c73/230d/tmpiqkmcdiu/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p'" in 2.1145 seconds and 154.0 Mi memory
2023-07-05 13:45:27.338079: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/5607/7b3d/tmp4yz94e9o/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p'" in 2.1565 seconds and 51.9 Mi memory
2023-07-05 13:45:27.339525: Running the command: "cactus_analyseAssembly NA18906.2.sanitized.fa"
2023-07-05 13:45:27.346779: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/99fb/bc3f/tmpn8ahjigy/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p'" in 2.3926 seconds and 58.3 Mi memory
2023-07-05 13:45:27.346933: Running the command: "cactus_analyseAssembly HG01109.1.sanitized.fa"
2023-07-05 13:45:27.347187: Running the command: "cactus_analyseAssembly HG03540.2.sanitized.fa"
2023-07-05 13:45:27.347427: Running the command: "cactus_analyseAssembly HG03486.2.sanitized.fa"
2023-07-05 13:45:27.355721: Running the command: "cactus_analyseAssembly NA21309.2.sanitized.fa"
2023-07-05 13:45:27.357034: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/7016/9bfb/tmpsom9m_fr/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p"
2023-07-05 13:45:27.357423: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/8966/ac6b/tmpy0va9alt/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p'" in 2.2047 seconds and 154.0 Mi memory
2023-07-05 13:45:27.359440: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/c711/f63e/tmp5pz45o55/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p'" in 2.1228 seconds and 154.0 Mi memory
2023-07-05 13:45:27.365651: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/fc49/dabe/tmpnvzeklvu/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p'" in 2.1922 seconds and 154.0 Mi memory
2023-07-05 13:45:27.365712: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/2878/2da9/tmpt4jo12xj/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p'" in 2.125 seconds and 153.9 Mi memory
2023-07-05 13:45:27.365973: Running the command: "cactus_analyseAssembly HG03516.2.sanitized.fa"
2023-07-05 13:45:27.368685: Running the command: "cactus_analyseAssembly HG00735.2.sanitized.fa"
2023-07-05 13:45:27.370682: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/e411/a0dd/tmpuya6gio3/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p'" in 2.4309 seconds and 154.0 Mi memory
2023-07-05 13:45:27.373878: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/c38a/adbc/tmp6vcnp63s/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p'" in 2.4906 seconds and 154.0 Mi memory
2023-07-05 13:45:27.374427: Running the command: "cactus_analyseAssembly HG01071.1.sanitized.fa"
2023-07-05 13:45:27.374609: Running the command: "cactus_analyseAssembly HG01106.1.sanitized.fa"
2023-07-05 13:45:27.379920: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/7d46/9516/tmplbk0sq6j/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p'" in 2.1552 seconds and 154.0 Mi memory
2023-07-05 13:45:27.380335: Running the command: "cactus_analyseAssembly HG01123.2.sanitized.fa"
2023-07-05 13:45:27.383273: Running the command: "cactus_analyseAssembly HG00438.1.sanitized.fa"
2023-07-05 13:45:27.388368: Running the command: "cactus_analyseAssembly HG01891.2.sanitized.fa"
2023-07-05 13:45:27.546121: Successfully ran: "cactus_analyseAssembly HG03579.1.sanitized.fa" in 1.3723 seconds and 153.9 Mi memory
2023-07-05 13:45:27.574927: Successfully ran: "cactus_analyseAssembly HG00438.2.sanitized.fa" in 1.3668 seconds and 153.9 Mi memory
2023-07-05 13:45:27.859938: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/e36a/ec04/tmp71t_l8n6/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p'" in 1.966 seconds and 154.0 Mi memory
2023-07-05 13:45:27.868386: Running the command: "cactus_analyseAssembly NA18906.2.sanitized.fa"
2023-07-05 13:45:27.871387: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/efd4/181e/tmpksq7za__/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p'" in 1.8292 seconds and 51.9 Mi memory
2023-07-05 13:45:27.879900: Running the command: "cactus_analyseAssembly NA21309.1.sanitized.fa"
2023-07-05 13:45:27.879805: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/08402753cd8e59cb92395c76616834fe/64f0/b983/tmp4f_dkue5/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p'" in 2.9625 seconds and 154.0 Mi memory
2023-07-05 13:45:27.887570: Running the command: "cactus_analyseAssembly HG02622.1.sanitized.fa"
2023-07-05 13:45:27.895571: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/ddf3/8024/tmpznk13kcy/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p'" in 2.0007 seconds and 154.0 Mi memory
2023-07-05 13:45:27.900725: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/f4fb/c89e/tmpznou3s6w/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p'" in 1.8441 seconds and 77.2 Mi memory
2023-07-05 13:45:27.903974: Running the command: "cactus_analyseAssembly HG01952.2.sanitized.fa"
2023-07-05 13:45:27.909057: Running the command: "cactus_analyseAssembly HG01106.1.sanitized.fa"
2023-07-05 13:45:27.910637: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8f2f/c3be/tmpsbe7wrsg/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
2023-07-05 13:45:27.918523: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/fef5/d23f/tmpjxtjnm4y/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p'" in 1.8761 seconds and 51.9 Mi memory
2023-07-05 13:45:27.927176: Running the command: "cactus_analyseAssembly HG03486.1.sanitized.fa"
2023-07-05 13:45:27.925001: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4fd9/37c7/tmp8z3qjden/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p"
2023-07-05 13:45:27.940155: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2f2b/a37e/tmpqny813n4/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p"
2023-07-05 13:45:27.946346: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ac0d/1acd/tmpf6_5c3_3/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p"
2023-07-05 13:45:27.954685: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/34f7/2319/tmpd6_21z92/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p"
2023-07-05 13:45:27.958088: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/97f7/bf2e/tmp4a2z051g/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p"
2023-07-05 13:45:27.962054: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/1bcd/b8aa/tmppa6tm83y/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p"
2023-07-05 13:45:27.966501: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/585e/b766/tmpbwizf8er/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:45:27.968542: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/ca9e/e181/tmp_llsyq31/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p"
2023-07-05 13:45:27.971027: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/040f/f16d/tmpq_bckj4v/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p"
2023-07-05 13:45:27.971859: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/998f/f666/tmpx45bdf5m/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p"
2023-07-05 13:45:27.972112: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/90b7/8860/tmpywapuqll/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p"
2023-07-05 13:45:27.973135: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/dbcd/ce64/tmpo0t8vrxx/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-05 13:45:27.973360: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/48df/8fe3/tmpu9bpcrup/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p"
2023-07-05 13:45:27.973423: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/73e1/2efc/tmpo_o62jp1/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p"
2023-07-05 13:45:27.973472: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/9a18/d97a/tmpza1z7lyv/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p"
2023-07-05 13:45:27.975459: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/03d3/62d5/tmpct36ox0g/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p'" in 1.8071 seconds and 57.3 Mi memory
2023-07-05 13:45:27.974747: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/5326/609a/tmpulqs0ytx/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p"
2023-07-05 13:45:27.979552: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/73ec/43fe/tmp87nljlrb/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p"
2023-07-05 13:45:27.979179: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b62b/0396/tmpwqdup5bf/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:45:27.983609: Running the command: "cactus_analyseAssembly HG02818.1.sanitized.fa"
2023-07-05 13:45:27.983342: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/22fd/29c6/tmpvbm36lhr/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p"
2023-07-05 13:45:27.983374: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/995b/c0f4/tmp_i23vw1c/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p"
2023-07-05 13:45:27.985592: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6b98/84c3/tmph9rwhz8q/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p"
2023-07-05 13:45:27.985985: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/d800/6250/tmpoxknzs1t/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p"
2023-07-05 13:45:27.988878: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/4b00/0f43/tmp5p3eio2z/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p"
2023-07-05 13:45:27.987538: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1ef7/5379/tmp693v6x2b/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p"
2023-07-05 13:45:27.988486: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c625/8391/tmpbdy7thpz/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p"
2023-07-05 13:45:27.990830: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ea8/b1b4/tmpm0bclqah/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p"
2023-07-05 13:45:27.991020: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e1ac/1bfd/tmpz_7ypet_/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p"
2023-07-05 13:45:27.990987: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f396/c4fa/tmp_n5pvf3z/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p"
2023-07-05 13:45:27.991383: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a674/0e23/tmpmxwta1fg/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-05 13:45:27.991555: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f342/ff6d/tmp_3_qzpdk/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p"
2023-07-05 13:45:27.993231: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0f71/d8b4/tmpb6x9oqla/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p"
2023-07-05 13:45:27.996665: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7a82/5336/tmp32ldvkj4/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p"
2023-07-05 13:45:27.997454: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9ca0/a3e1/tmpoj7tyghw/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p"
2023-07-05 13:45:27.997841: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/bf82/6205/tmp88kx0gzw/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p"
2023-07-05 13:45:27.998244: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1e3d/7e79/tmpc803u9br/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p"
2023-07-05 13:45:27.998261: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/087a/52ce/tmpkh2lze1n/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p"
2023-07-05 13:45:27.998259: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1400/1fe9/tmp10b7wjc6/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p"
2023-07-05 13:45:27.998570: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cfdc/3307/tmplve6yr3j/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p"
2023-07-05 13:45:27.999125: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/68c0/66d5/tmpp342hzll/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
2023-07-05 13:45:27.999310: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a106/9622/tmp2gd_nmho/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-05 13:45:27.999448: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/701d/c322/tmpplvmgwpp/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p"
2023-07-05 13:45:28.005400: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/9525/7865/tmpg201n98q/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p'" in 1.947 seconds and 154.0 Mi memory
2023-07-05 13:45:28.005367: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/873d/25a9/tmpkmj3qltl/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p"
2023-07-05 13:45:28.013950: Running the command: "cactus_analyseAssembly HG02148.2.sanitized.fa"
2023-07-05 13:45:28.038381: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/e5bd/5c2d/tmplwobqsxs/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p'" in 1.8793 seconds and 154.0 Mi memory
2023-07-05 13:45:28.052608: Running the command: "cactus_analyseAssembly HG01123.1.sanitized.fa"
2023-07-05 13:45:28.067506: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/f321/7630/tmpplprf_xj/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p'" in 1.9073 seconds and 154.0 Mi memory
2023-07-05 13:45:28.075626: Running the command: "cactus_analyseAssembly HG01978.2.sanitized.fa"
2023-07-05 13:45:28.092840: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/bb14/4c76/tmputrck87b/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p'" in 1.2812 seconds and 76.0 Mi memory
2023-07-05 13:45:28.095103: Running the command: "cactus_analyseAssembly HG01978.2.sanitized.fa"
2023-07-05 13:45:28.101990: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/f826/83be/tmp1tn7lhmt/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p'" in 1.2537 seconds and 52.9 Mi memory
2023-07-05 13:45:28.104250: Running the command: "cactus_analyseAssembly NA18906.1.sanitized.fa"
2023-07-05 13:45:28.109139: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/c5e1/127f/tmp8dq41lx3/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p'" in 1.2676 seconds and 51.9 Mi memory
2023-07-05 13:45:28.111325: Running the command: "cactus_analyseAssembly HG02886.1.sanitized.fa"
2023-07-05 13:45:28.119103: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/d51d/b6f0/tmpl5nwgc2u/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p'" in 1.2538 seconds and 51.9 Mi memory
2023-07-05 13:45:28.121274: Running the command: "cactus_analyseAssembly HG02055.1.sanitized.fa"
2023-07-05 13:45:28.127674: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/c332/ba37/tmpjs9cs1qc/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p'" in 1.213 seconds and 51.9 Mi memory
2023-07-05 13:45:28.128745: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/6b1c/f3eb/tmpft6c1svs/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p'" in 1.2582 seconds and 53.7 Mi memory
2023-07-05 13:45:28.130021: Running the command: "cactus_analyseAssembly HG03453.2.sanitized.fa"
2023-07-05 13:45:28.130809: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/9c0e/2853/tmpex0de80p/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p'" in 1.2491 seconds and 51.8 Mi memory
2023-07-05 13:45:28.131047: Running the command: "cactus_analyseAssembly HG00735.1.sanitized.fa"
2023-07-05 13:45:28.132960: Running the command: "cactus_analyseAssembly HG01952.2.sanitized.fa"
2023-07-05 13:45:28.134015: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/75dc/92a6/tmp777wwotq/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p'" in 1.2278 seconds and 56.4 Mi memory
2023-07-05 13:45:28.136148: Running the command: "cactus_analyseAssembly HG02148.2.sanitized.fa"
2023-07-05 13:45:28.138130: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/0117/45bf/tmpd4cjxz5t/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p'" in 1.2185 seconds and 53.6 Mi memory
2023-07-05 13:45:28.140252: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/b0ec/ed82/tmpdpijnbog/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p'" in 1.2304 seconds and 53.3 Mi memory
2023-07-05 13:45:28.140470: Running the command: "cactus_analyseAssembly HG00673.1.sanitized.fa"
2023-07-05 13:45:28.142525: Running the command: "cactus_analyseAssembly HG00621.1.sanitized.fa"
2023-07-05 13:45:28.144845: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/c4d1/1c3b/tmpgdjwmll0/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p'" in 1.2464 seconds and 57.3 Mi memory
2023-07-05 13:45:28.146988: Running the command: "cactus_analyseAssembly HG01891.2.sanitized.fa"
2023-07-05 13:45:28.147990: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/ae86/b822/tmpvbsoee0b/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p'" in 1.2059 seconds and 57.5 Mi memory
2023-07-05 13:45:28.150156: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/df64/d476/tmpcrnso605/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p'" in 1.2153 seconds and 69.7 Mi memory
2023-07-05 13:45:28.150223: Running the command: "cactus_analyseAssembly HG03492.2.sanitized.fa"
2023-07-05 13:45:28.152316: Running the command: "cactus_analyseAssembly HG01891.1.sanitized.fa"
2023-07-05 13:45:28.161469: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/8060/cd36/tmp62buqgyl/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 1.2255 seconds and 51.9 Mi memory
2023-07-05 13:45:28.163653: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/98f5/20a7/tmp5nutwjnd/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p'" in 1.2179 seconds and 57.5 Mi memory
2023-07-05 13:45:28.163772: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
2023-07-05 13:45:28.165781: Running the command: "cactus_analyseAssembly HG02886.2.sanitized.fa"
Got message from job at time 07-05-2023 13:45:28: Assembly stats for HG00735.1: Input-sample: HG00735.1.sanitized.fa Total-sequences: 5 Total-length: 79141138 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19321623 Median-sequence-length: 17874776 Max-sequence-length: 33330549 Min-sequence-length: 2621491

2023-07-05 13:45:28.178147: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/0476/8475/tmp7ookd6ti/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p'" in 1.2809 seconds and 153.9 Mi memory
2023-07-05 13:45:28.180521: Running the command: "cactus_analyseAssembly HG00735.2.sanitized.fa"
2023-07-05 13:45:28.202134: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/f2ae/3830/tmpri4h7jxo/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p'" in 1.2029 seconds and 60.6 Mi memory
2023-07-05 13:45:28.204419: Running the command: "cactus_analyseAssembly HG01109.1.sanitized.fa"
2023-07-05 13:45:28.211505: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/5609/4cca/tmp1mld7nfn/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p'" in 1.2921 seconds and 57.0 Mi memory
2023-07-05 13:45:28.213025: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/d498/99d9/tmp0odaebd5/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p'" in 1.2159 seconds and 51.9 Mi memory
2023-07-05 13:45:28.213574: Running the command: "cactus_analyseAssembly HG03540.2.sanitized.fa"
2023-07-05 13:45:28.215467: Running the command: "cactus_analyseAssembly HG02486.2.sanitized.fa"
2023-07-05 13:45:28.215699: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/704a/604d/tmp5tglzz4w/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p'" in 1.2569 seconds and 51.9 Mi memory
2023-07-05 13:45:28.217163: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/8146/84ac/tmpu4i6pbbn/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p'" in 1.3268 seconds and 153.9 Mi memory
2023-07-05 13:45:28.217765: Running the command: "cactus_analyseAssembly HG00733.2.sanitized.fa"
2023-07-05 13:45:28.219276: Running the command: "cactus_analyseAssembly HG02622.2.sanitized.fa"
2023-07-05 13:45:28.222831: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/94f3/ba8c/tmp_xtx4a8o/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p'" in 1.3065 seconds and 58.0 Mi memory
2023-07-05 13:45:28.224931: Running the command: "cactus_analyseAssembly HG00621.2.sanitized.fa"
2023-07-05 13:45:28.262471: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/7016/9bfb/tmpsom9m_fr/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p'" in 0.9044 seconds and 51.9 Mi memory
2023-07-05 13:45:28.266572: Running the command: "cactus_analyseAssembly HG02257.2.sanitized.fa"
2023-07-05 13:45:28.298302: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/fe46/0fc1/tmpkr_q0wsa/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p'" in 1.4404 seconds and 51.9 Mi memory
2023-07-05 13:45:28.300632: Running the command: "cactus_analyseAssembly HG02572.2.sanitized.fa"
2023-07-05 13:45:28.303638: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 1.1486 seconds and 72.5 Mi memory
2023-07-05 13:45:28.321395: Successfully ran: "cactus_analyseAssembly HG02559.2.sanitized.fa" in 1.1722 seconds and 71.4 Mi memory
2023-07-05 13:45:28.332260: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 1.1616 seconds and 51.9 Mi memory
2023-07-05 13:45:28.341620: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/853b/7cc6/tmpvp0o0qe6/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p"
2023-07-05 13:45:28.342685: Successfully ran: "cactus_analyseAssembly HG01175.2.sanitized.fa" in 1.1551 seconds and 52.6 Mi memory
2023-07-05 13:45:28.343029: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/2de9/9d1e/tmppr7s5zh7/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p"
2023-07-05 13:45:28.347432: Successfully ran: "cactus_analyseAssembly HG01361.1.sanitized.fa" in 1.1715 seconds and 69.4 Mi memory
2023-07-05 13:45:28.360770: Successfully ran: "cactus_analyseAssembly HG03492.2.sanitized.fa" in 1.1556 seconds and 51.9 Mi memory
2023-07-05 13:45:28.363849: Successfully ran: "cactus_analyseAssembly HG03486.1.sanitized.fa" in 1.1611 seconds and 51.9 Mi memory
2023-07-05 13:45:28.365285: Successfully ran: "cactus_analyseAssembly HG01123.2.sanitized.fa" in 1.1615 seconds and 51.9 Mi memory
2023-07-05 13:45:28.368108: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/bd44/cfb1/tmpj0jl73ua/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:45:28.369424: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/73cb/7c04/tmp9r1i3jto/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p"
2023-07-05 13:45:28.369793: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/8a06/75c9/tmpeca_phrh/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-05 13:45:28.370588: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/4e9e/2c0d/tmpj0dm_z7d/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p"
2023-07-05 13:45:28.372179: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/2974/1bda/tmpf1ubqwz8/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
2023-07-05 13:45:28.372646: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/b1eb/8d0b/tmp4cfg1dfp/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p"
2023-07-05 13:45:28.378815: Successfully ran: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa" in 1.2639 seconds and 4.2 Mi memory
2023-07-05 13:45:28.379697: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/2fc4/0a21/tmp3x2mp947/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p"
2023-07-05 13:45:28.380275: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/7007/5d40/tmp_xbef6pl/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p"
2023-07-05 13:45:28.381761: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 1.1564 seconds and 51.9 Mi memory
2023-07-05 13:45:28.382084: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/25ab/7c0a/tmpuca7dkbc/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p"
2023-07-05 13:45:28.382462: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a4b8/1d0b/tmpw7eebfpp/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p"
2023-07-05 13:45:28.382982: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/17d8/9688/tmpw203cdbj/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-05 13:45:28.385255: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0ad6/0631/tmpx4jgclcu/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p"
2023-07-05 13:45:28.386927: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ae7e/45e5/tmpt9jnevdy/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p"
2023-07-05 13:45:28.387556: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 1.146 seconds and 51.9 Mi memory
2023-07-05 13:45:28.387567: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 1.171 seconds and 74.0 Mi memory
2023-07-05 13:45:28.387923: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/c7a0/127c/tmpcorrrznm/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p"
2023-07-05 13:45:28.388671: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/8a78/1b26/tmpfp04vr0j/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p"
2023-07-05 13:45:28.389095: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/beb3/cc94/tmpkui6wkpr/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:45:28.389261: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 1.1697 seconds and 51.9 Mi memory
2023-07-05 13:45:28.390124: Successfully ran: "cactus_analyseAssembly HG02723.1.sanitized.fa" in 1.1563 seconds and 51.9 Mi memory
2023-07-05 13:45:28.393992: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/88d2/9108/tmp3fqy49h0/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p"
2023-07-05 13:45:28.398295: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/f181/96c9/tmpco6b_1ra/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p"
2023-07-05 13:45:28.401540: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 1.1689 seconds and 61.4 Mi memory
2023-07-05 13:45:28.404034: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e54c/e2b1/tmp_tw7e4ql/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
2023-07-05 13:45:28.404653: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/5236/d353/tmpc1n57thc/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
2023-07-05 13:45:28.404954: Successfully ran: "cactus_analyseAssembly HG02622.2.sanitized.fa" in 1.1904 seconds and 153.9 Mi memory
2023-07-05 13:45:28.406407: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/8dff/aafa/tmpyl9nnt8g/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p"
2023-07-05 13:45:28.407686: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/6d59/d584/tmppcbmrz7i/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p"
2023-07-05 13:45:28.407901: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/36ee/02f3/tmp9gd9dwbi/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:45:28.409350: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9267/faaf/tmpdw5jvch3/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p"
2023-07-05 13:45:28.410062: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/6010/2eb6/tmpeenhygv6/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p"
2023-07-05 13:45:28.410679: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 1.1723 seconds and 51.9 Mi memory
2023-07-05 13:45:28.412236: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/12d7/22f0/tmpx_f24p38/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p"
2023-07-05 13:45:28.412640: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/bf43/d34a/tmpnk2_n9ny/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p"
2023-07-05 13:45:28.412656: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/b1e4/baf0/tmp1q6c8qmj/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p"
2023-07-05 13:45:28.413611: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/883c/21f4/tmp6_skkopy/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p"
2023-07-05 13:45:28.413774: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/afdd/5cce/tmps05543zf/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p"
2023-07-05 13:45:28.414181: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e9df/a539/tmptlst71o7/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p"
2023-07-05 13:45:28.415086: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/d798/3a97/tmpdso3qxmy/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
2023-07-05 13:45:28.415984: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/9e43/bdf8/tmpyqtgn37m/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p'" in 1.4922 seconds and 153.9 Mi memory
2023-07-05 13:45:28.416163: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/4dd9/3181/tmpx_jdbyac/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p"
2023-07-05 13:45:28.416386: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/d7a3/3349/tmp23_mk20q/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p"
2023-07-05 13:45:28.417014: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/6808/6e86/tmp3ncvx051/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p"
2023-07-05 13:45:28.418299: Running the command: "cactus_analyseAssembly HG01071.2.sanitized.fa"
2023-07-05 13:45:28.420382: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0693/eea1/tmpr71une1j/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p"
2023-07-05 13:45:28.422241: Successfully ran: "cactus_analyseAssembly HG03098.1.sanitized.fa" in 1.1857 seconds and 58.8 Mi memory
2023-07-05 13:45:28.422684: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/f08e/ee2e/tmp4l3egc_0/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
2023-07-05 13:45:28.428925: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 1.183 seconds and 153.9 Mi memory
2023-07-05 13:45:28.433582: Successfully ran: "cactus_analyseAssembly NA18906.2.sanitized.fa" in 1.1861 seconds and 51.9 Mi memory
2023-07-05 13:45:28.449541: Successfully ran: "cactus_analyseAssembly HG02572.2.sanitized.fa" in 1.1472 seconds and 51.9 Mi memory
2023-07-05 13:45:28.459154: Successfully ran: "cactus_analyseAssembly HG02559.1.sanitized.fa" in 1.203 seconds and 153.9 Mi memory
2023-07-05 13:45:28.459528: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 1.2221 seconds and 153.9 Mi memory
2023-07-05 13:45:28.465430: Successfully ran: "cactus_analyseAssembly HG01243.1.sanitized.fa" in 1.188 seconds and 59.8 Mi memory
2023-07-05 13:45:28.469309: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 1.1726 seconds and 51.9 Mi memory
2023-07-05 13:45:28.476232: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 1.1809 seconds and 65.0 Mi memory
2023-07-05 13:45:28.481177: Successfully ran: "cactus_analyseAssembly HG02486.1.sanitized.fa" in 1.2375 seconds and 153.9 Mi memory
2023-07-05 13:45:28.494195: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 1.1813 seconds and 51.9 Mi memory
2023-07-05 13:45:28.496766: Successfully ran: "cactus_analyseAssembly HG03579.2.sanitized.fa" in 1.2122 seconds and 153.9 Mi memory
2023-07-05 13:45:28.500838: Successfully ran: "cactus_analyseAssembly HG03486.1.sanitized.fa" in 1.2443 seconds and 51.9 Mi memory
2023-07-05 13:45:28.501229: Successfully ran: "cactus_analyseAssembly HG02818.1.sanitized.fa" in 1.1682 seconds and 51.9 Mi memory
2023-07-05 13:45:28.507697: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 1.3048 seconds and 51.9 Mi memory
2023-07-05 13:45:28.507140: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 1.2405 seconds and 174.0 Mi memory
2023-07-05 13:45:28.507655: Successfully ran: "cactus_analyseAssembly HG02717.2.sanitized.fa" in 1.243 seconds and 170.2 Mi memory
2023-07-05 13:45:28.513800: Successfully ran: "cactus_analyseAssembly HG02622.1.sanitized.fa" in 1.2229 seconds and 153.9 Mi memory
2023-07-05 13:45:28.516652: Successfully ran: "cactus_analyseAssembly HG00733.1.sanitized.fa" in 1.2303 seconds and 153.9 Mi memory
2023-07-05 13:45:28.518476: Successfully ran: "cactus_analyseAssembly HG01952.2.sanitized.fa" in 1.2216 seconds and 153.9 Mi memory
2023-07-05 13:45:28.532373: Successfully ran: "cactus_analyseAssembly NA21309.2.sanitized.fa" in 1.1756 seconds and 58.3 Mi memory
2023-07-05 13:45:28.534533: Successfully ran: "cactus_analyseAssembly HG01071.2.sanitized.fa" in 1.2489 seconds and 153.9 Mi memory
2023-07-05 13:45:28.535762: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/a0b8/4bd2/tmprk8au70x/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p'" in 1.9082 seconds and 70.7 Mi memory
2023-07-05 13:45:28.538080: Successfully ran: "cactus_analyseAssembly HG01358.2.sanitized.fa" in 1.2339 seconds and 153.9 Mi memory
2023-07-05 13:45:28.540927: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/6453/5a34/tmpnxo93h2g/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p'" in 1.8999 seconds and 57.8 Mi memory
2023-07-05 13:45:28.543069: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/fd33/085c/tmp82kdccj5/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p'" in 1.9173 seconds and 51.9 Mi memory
2023-07-05 13:45:28.544699: Running the command: "cactus_analyseAssembly HG02257.1.sanitized.fa"
2023-07-05 13:45:28.547639: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/cdf2/ae69/tmpx2dp8mmu/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p'" in 1.9609 seconds and 51.9 Mi memory
2023-07-05 13:45:28.549200: Running the command: "cactus_analyseAssembly HG02559.2.sanitized.fa"
2023-07-05 13:45:28.549545: Successfully ran: "cactus_analyseAssembly NA18906.2.sanitized.fa" in 1.2091 seconds and 57.5 Mi memory
2023-07-05 13:45:28.551551: Running the command: "cactus_analyseAssembly HG02257.2.sanitized.fa"
2023-07-05 13:45:28.551775: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 1.2412 seconds and 153.9 Mi memory
2023-07-05 13:45:28.554799: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 1.2387 seconds and 51.9 Mi memory
2023-07-05 13:45:28.555666: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/f42f/e4d3/tmp47d6e4oe/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p'" in 1.9268 seconds and 51.9 Mi memory
2023-07-05 13:45:28.555999: Running the command: "cactus_analyseAssembly NA20129.1.sanitized.fa"
2023-07-05 13:45:28.562893: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/3dac/667c/tmp6vn532k6/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p'" in 1.9222 seconds and 68.9 Mi memory
2023-07-05 13:45:28.563887: Running the command: "cactus_analyseAssembly HG02886.2.sanitized.fa"
2023-07-05 13:45:28.567433: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/3714/7171/tmpjjd2n5j6/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p'" in 1.9563 seconds and 51.9 Mi memory
2023-07-05 13:45:28.570977: Running the command: "cactus_analyseAssembly HG01106.1.sanitized.fa"
2023-07-05 13:45:28.571667: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/0c3c/5be7/tmpoaz_gxyu/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 1.952 seconds and 51.9 Mi memory
2023-07-05 13:45:28.575518: Running the command: "cactus_analyseAssembly HG03453.1.sanitized.fa"
2023-07-05 13:45:28.576497: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/c8a3/ec44/tmpq8tqp30j/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p'" in 1.5346 seconds and 53.7 Mi memory
2023-07-05 13:45:28.578122: Successfully ran: "cactus_analyseAssembly HG03486.2.sanitized.fa" in 1.2298 seconds and 51.9 Mi memory
2023-07-05 13:45:28.578395: Successfully ran: "cactus_analyseAssembly HG02055.2.sanitized.fa" in 1.2635 seconds and 66.3 Mi memory
2023-07-05 13:45:28.579231: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-05 13:45:28.580927: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/c0f1/d014/tmpg_9hrt6n/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p'" in 1.9334 seconds and 52.1 Mi memory
2023-07-05 13:45:28.582490: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/0bd5/ae46/tmpilqumn5t/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p'" in 1.9387 seconds and 58.4 Mi memory
2023-07-05 13:45:28.586031: Running the command: "cactus_analyseAssembly HG02148.1.sanitized.fa"
2023-07-05 13:45:28.586837: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/9d0d/ab30/tmpy_2475wn/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p'" in 1.9513 seconds and 153.9 Mi memory
2023-07-05 13:45:28.587867: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/02a7/f567/tmpujjc_15c/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p'" in 1.9511 seconds and 153.9 Mi memory
2023-07-05 13:45:28.588755: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/99b8/3b4e/tmpckzbbqwi/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p'" in 1.955 seconds and 65.6 Mi memory
2023-07-05 13:45:28.589378: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 1.2598 seconds and 163.7 Mi memory
2023-07-05 13:45:28.589616: Running the command: "cactus_analyseAssembly HG00741.2.sanitized.fa"
2023-07-05 13:45:28.590595: Running the command: "cactus_analyseAssembly NA20129.2.sanitized.fa"
2023-07-05 13:45:28.592183: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/4c6a/1614/tmp6tvpky06/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p'" in 1.9949 seconds and 51.8 Mi memory
2023-07-05 13:45:28.593713: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ea9c/6833/tmpo0mf18gr/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p'" in 1.5658 seconds and 154.0 Mi memory
2023-07-05 13:45:28.594694: Successfully ran: "cactus_analyseAssembly HG03540.2.sanitized.fa" in 1.2464 seconds and 56.2 Mi memory
2023-07-05 13:45:28.595368: Running the command: "cactus_analyseAssembly HG02486.2.sanitized.fa"
2023-07-05 13:45:28.596142: Running the command: "cactus_analyseAssembly HG00733.2.sanitized.fa"
2023-07-05 13:45:28.596310: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/91c0/fb52/tmp31ccs0cf/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p'" in 1.9461 seconds and 73.3 Mi memory
2023-07-05 13:45:28.597032: Running the command: "cactus_analyseAssembly HG01361.1.sanitized.fa"
2023-07-05 13:45:28.600774: Running the command: "cactus_analyseAssembly HG00673.2.sanitized.fa"
2023-07-05 13:45:28.600855: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/737b/b3da/tmpqpi0dq5q/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p'" in 1.9568 seconds and 154.0 Mi memory
2023-07-05 13:45:28.601523: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/d467/ab2c/tmp5v300x0c/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p'" in 1.9683 seconds and 154.0 Mi memory
2023-07-05 13:45:28.602777: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/2d9a/5116/tmpryw88io6/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p'" in 1.969 seconds and 51.9 Mi memory
2023-07-05 13:45:28.603755: Running the command: "cactus_analyseAssembly HG02622.1.sanitized.fa"
2023-07-05 13:45:28.603609: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/4ef0/00e1/tmp87rxavo6/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p'" in 1.9889 seconds and 154.0 Mi memory
2023-07-05 13:45:28.605604: Running the command: "cactus_analyseAssembly HG00741.1.sanitized.fa"
2023-07-05 13:45:28.607398: Successfully ran: "cactus_analyseAssembly NA18906.1.sanitized.fa" in 1.2786 seconds and 153.9 Mi memory
2023-07-05 13:45:28.608392: Successfully ran: "cactus_analyseAssembly HG00438.1.sanitized.fa" in 1.2239 seconds and 153.9 Mi memory
2023-07-05 13:45:28.608979: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/930c/e898/tmpzkak1_xz/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p'" in 1.9765 seconds and 154.0 Mi memory
2023-07-05 13:45:28.609666: Running the command: "cactus_analyseAssembly HG02486.1.sanitized.fa"
2023-07-05 13:45:28.610044: Running the command: "cactus_analyseAssembly HG03516.1.sanitized.fa"
2023-07-05 13:45:28.611387: Running the command: "cactus_analyseAssembly HG03579.2.sanitized.fa"
2023-07-05 13:45:28.612383: Running the command: "cactus_analyseAssembly HG01175.2.sanitized.fa"
2023-07-05 13:45:28.613854: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/e639/fcb0/tmphovpu85e/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p'" in 2.0108 seconds and 51.9 Mi memory
2023-07-05 13:45:28.614423: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/7377/9e9c/tmppa0q8ssk/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p'" in 1.9669 seconds and 153.9 Mi memory
2023-07-05 13:45:28.615658: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/6608/741f/tmpa0q11h0y/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p'" in 1.9586 seconds and 51.9 Mi memory
2023-07-05 13:45:28.616990: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
2023-07-05 13:45:28.622074: Running the command: "cactus_analyseAssembly HG03486.2.sanitized.fa"
2023-07-05 13:45:28.622077: Successfully ran: "cactus_analyseAssembly HG01123.2.sanitized.fa" in 1.2408 seconds and 153.9 Mi memory
2023-07-05 13:45:28.622314: Successfully ran: "cactus_analyseAssembly HG02886.1.sanitized.fa" in 0.5103 seconds and 51.8 Mi memory
2023-07-05 13:45:28.622689: Running the command: "cactus_analyseAssembly HG00621.1.sanitized.fa"
2023-07-05 13:45:28.623694: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/c622/6b39/tmpsqtoptos/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p'" in 1.9915 seconds and 154.0 Mi memory
2023-07-05 13:45:28.624234: Running the command: "cactus_analyseAssembly HG03540.1.sanitized.fa"
2023-07-05 13:45:28.624555: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/c021/8ecb/tmpzv1hpb7e/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p'" in 1.9865 seconds and 51.9 Mi memory
2023-07-05 13:45:28.625580: Successfully ran: "cactus_analyseAssembly HG02055.1.sanitized.fa" in 0.5037 seconds and 51.8 Mi memory
2023-07-05 13:45:28.626029: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/ed98/119d/tmpcxsdf4az/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p'" in 2.0014 seconds and 154.0 Mi memory
2023-07-05 13:45:28.626620: Successfully ran: "cactus_analyseAssembly HG01978.2.sanitized.fa" in 0.5307 seconds and 76.0 Mi memory
2023-07-05 13:45:28.627051: Successfully ran: "cactus_analyseAssembly NA18906.1.sanitized.fa" in 0.5221 seconds and 52.8 Mi memory
2023-07-05 13:45:28.628320: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/a9ea/f7ce/tmpo2fvcmii/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p'" in 2.0281 seconds and 51.9 Mi memory
2023-07-05 13:45:28.628492: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/fad1/483b/tmpr3hgz1bg/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p'" in 2.033 seconds and 51.9 Mi memory
2023-07-05 13:45:28.632128: Running the command: "cactus_analyseAssembly HG01109.1.sanitized.fa"
2023-07-05 13:45:28.633165: Running the command: "cactus_analyseAssembly HG02109.1.sanitized.fa"
2023-07-05 13:45:28.633852: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 1.267 seconds and 153.9 Mi memory
2023-07-05 13:45:28.634652: Running the command: "cactus_analyseAssembly HG02559.1.sanitized.fa"
2023-07-05 13:45:28.635755: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/cb3a/93bf/tmpnttbfmsz/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p'" in 2.0265 seconds and 51.9 Mi memory
2023-07-05 13:45:28.636101: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/90b3/99ca/tmp3qpx2eic/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p'" in 1.9994 seconds and 52.2 Mi memory
2023-07-05 13:45:28.636730: Running the command: "cactus_analyseAssembly HG02145.2.sanitized.fa"
2023-07-05 13:45:28.636869: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/1b44/2081/tmpa3to3zrc/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p'" in 2.0347 seconds and 51.9 Mi memory
2023-07-05 13:45:28.637011: Running the command: "cactus_analyseAssembly HG02145.1.sanitized.fa"
2023-07-05 13:45:28.639215: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 0.5085 seconds and 51.8 Mi memory
2023-07-05 13:45:28.640791: Successfully ran: "cactus_analyseAssembly HG00735.1.sanitized.fa" in 0.5091 seconds and 53.6 Mi memory
2023-07-05 13:45:28.642162: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/cc09/d6c3/tmp6wntceef/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p'" in 1.9986 seconds and 165.0 Mi memory
2023-07-05 13:45:28.643848: Successfully ran: "cactus_analyseAssembly HG01952.2.sanitized.fa" in 0.5103 seconds and 51.8 Mi memory
2023-07-05 13:45:28.644861: Running the command: "cactus_analyseAssembly NA21309.1.sanitized.fa"
2023-07-05 13:45:28.644919: Running the command: "cactus_analyseAssembly HG02055.1.sanitized.fa"
2023-07-05 13:45:28.645885: Running the command: "cactus_analyseAssembly HG03492.2.sanitized.fa"
2023-07-05 13:45:28.647157: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/60f3/ca1c/tmp0v5dzh75/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p'" in 2.0957 seconds and 153.9 Mi memory
2023-07-05 13:45:28.647335: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/6cda/47da/tmp45qv_t2v/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p'" in 2.0114 seconds and 154.0 Mi memory
2023-07-05 13:45:28.647710: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 1.2995 seconds and 153.9 Mi memory
2023-07-05 13:45:28.650096: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 0.5133 seconds and 56.5 Mi memory
2023-07-05 13:45:28.650861: Running the command: "cactus_analyseAssembly CHM13.sanitized.fa"
2023-07-05 13:45:28.651340: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/ed6c/e47c/tmpjx0jvt9a/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p'" in 2.0165 seconds and 58.8 Mi memory
2023-07-05 13:45:28.651727: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/92f0/9cb4/tmp0e3om9gp/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p'" in 2.0062 seconds and 51.9 Mi memory
2023-07-05 13:45:28.655359: Running the command: "cactus_analyseAssembly HG00438.2.sanitized.fa"
2023-07-05 13:45:28.655386: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 0.5143 seconds and 53.6 Mi memory
2023-07-05 13:45:28.655939: Running the command: "cactus_analyseAssembly HG01952.1.sanitized.fa"
2023-07-05 13:45:28.657813: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/ec71/90d3/tmpwfqo5sgd/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p'" in 2.0397 seconds and 154.0 Mi memory
2023-07-05 13:45:28.658244: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 0.5151 seconds and 53.4 Mi memory
2023-07-05 13:45:28.659271: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/1da1/4dd1/tmpv77lon20/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p'" in 2.0231 seconds and 51.9 Mi memory
2023-07-05 13:45:28.660038: Running the command: "cactus_analyseAssembly HG02148.2.sanitized.fa"
2023-07-05 13:45:28.661105: Running the command: "cactus_analyseAssembly HG02630.1.sanitized.fa"
2023-07-05 13:45:28.662046: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/898f/b9d5/tmp9d47ncgs/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p'" in 2.025 seconds and 67.3 Mi memory
2023-07-05 13:45:28.666154: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/50d3/0339/tmp_9zd2u00/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p'" in 2.0331 seconds and 54.0 Mi memory
2023-07-05 13:45:28.666391: Successfully ran: "cactus_analyseAssembly HG01891.2.sanitized.fa" in 0.5188 seconds and 57.2 Mi memory
2023-07-05 13:45:28.666804: Running the command: "cactus_analyseAssembly HG02572.2.sanitized.fa"
2023-07-05 13:45:28.667489: Running the command: "cactus_analyseAssembly HG02055.2.sanitized.fa"
2023-07-05 13:45:28.668074: Successfully ran: "cactus_analyseAssembly HG01106.1.sanitized.fa" in 1.2926 seconds and 153.9 Mi memory
2023-07-05 13:45:28.670096: Running the command: "cactus_analyseAssembly HG01243.2.sanitized.fa"
2023-07-05 13:45:28.671767: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/8545/d3ad/tmp01dcm4vt/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p'" in 2.0335 seconds and 58.8 Mi memory
2023-07-05 13:45:28.672947: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/7e97/e686/tmp4l3lkxv2/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p'" in 2.0522 seconds and 51.9 Mi memory
2023-07-05 13:45:28.673698: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/5847/7829/tmppatxu2i8/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p'" in 2.0957 seconds and 51.9 Mi memory
2023-07-05 13:45:28.673762: Successfully ran: "cactus_analyseAssembly HG01891.1.sanitized.fa" in 0.5208 seconds and 69.6 Mi memory
2023-07-05 13:45:28.674181: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/da8b/380d/tmprt1ald8b/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p'" in 2.0386 seconds and 154.0 Mi memory
2023-07-05 13:45:28.674411: Successfully ran: "cactus_analyseAssembly HG03492.2.sanitized.fa" in 0.5236 seconds and 57.5 Mi memory
2023-07-05 13:45:28.674566: Running the command: "cactus_analyseAssembly HG02886.1.sanitized.fa"
2023-07-05 13:45:28.674836: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/f79d/6937/tmp1_myuoij/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p'" in 2.0296 seconds and 153.9 Mi memory
2023-07-05 13:45:28.679551: Successfully ran: "cactus_analyseAssembly HG01891.2.sanitized.fa" in 1.2903 seconds and 153.9 Mi memory
2023-07-05 13:45:28.680649: Running the command: "cactus_analyseAssembly HG02148.1.sanitized.fa"
2023-07-05 13:45:28.680909: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/df37/50aa/tmpupf83ehp/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p'" in 2.0406 seconds and 154.0 Mi memory
2023-07-05 13:45:28.681808: Running the command: "cactus_analyseAssembly HG03540.2.sanitized.fa"
2023-07-05 13:45:28.682370: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/e72c/82bf/tmpv4lskej1/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p'" in 2.0373 seconds and 154.0 Mi memory
2023-07-05 13:45:28.682568: Running the command: "cactus_analyseAssembly HG01891.2.sanitized.fa"
2023-07-05 13:45:28.682601: Running the command: "cactus_analyseAssembly HG03579.1.sanitized.fa"
2023-07-05 13:45:28.682845: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/fe26/55a4/tmp64uvj7k_/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p'" in 1.6007 seconds and 154.0 Mi memory
2023-07-05 13:45:28.684032: Running the command: "cactus_analyseAssembly HG01123.1.sanitized.fa"
2023-07-05 13:45:28.684593: Successfully ran: "cactus_analyseAssembly HG02886.2.sanitized.fa" in 0.5181 seconds and 57.5 Mi memory
2023-07-05 13:45:28.686983: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/b661/dc91/tmp8_k5s4_3/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p'" in 2.0727 seconds and 153.9 Mi memory
2023-07-05 13:45:28.689168: Successfully ran: "cactus_analyseAssembly HG02080.2.sanitized.fa" in 0.5247 seconds and 51.8 Mi memory
2023-07-05 13:45:28.689594: Running the command: "cactus_analyseAssembly HG02717.1.sanitized.fa"
2023-07-05 13:45:28.690582: Running the command: "cactus_analyseAssembly HG01175.1.sanitized.fa"
2023-07-05 13:45:28.690672: Successfully ran: "cactus_analyseAssembly HG01071.1.sanitized.fa" in 1.3154 seconds and 153.9 Mi memory
2023-07-05 13:45:28.692571: Running the command: "cactus_analyseAssembly HG01243.2.sanitized.fa"
2023-07-05 13:45:28.692793: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/d41a/03a1/tmpw2xr5f9v/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p'" in 2.0632 seconds and 154.0 Mi memory
2023-07-05 13:45:28.695558: Running the command: "cactus_analyseAssembly HG01891.1.sanitized.fa"
2023-07-05 13:45:28.696603: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/e0bb/7cf2/tmpw176pvyo/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p'" in 2.1201 seconds and 51.9 Mi memory
2023-07-05 13:45:28.701168: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/6748/eb15/tmpz4amg2dd/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p'" in 2.084 seconds and 154.0 Mi memory
2023-07-05 13:45:28.701686: Running the command: "cactus_analyseAssembly HG01358.1.sanitized.fa"
2023-07-05 13:45:28.705380: Running the command: "cactus_analyseAssembly HG02818.2.sanitized.fa"
2023-07-05 13:45:28.705673: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/41f5/e437/tmpxjgajufx/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p'" in 2.0689 seconds and 153.9 Mi memory
2023-07-05 13:45:28.706299: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/5a0d/cfd4/tmpr4mlgcir/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p'" in 2.0623 seconds and 153.9 Mi memory
2023-07-05 13:45:28.709755: Running the command: "cactus_analyseAssembly HG00735.1.sanitized.fa"
2023-07-05 13:45:28.709961: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/61de/ecdb/tmpvq2lqods/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p'" in 2.0645 seconds and 154.0 Mi memory
2023-07-05 13:45:28.714730: Running the command: "cactus_analyseAssembly HG00621.2.sanitized.fa"
2023-07-05 13:45:28.715119: Running the command: "cactus_analyseAssembly HG01361.2.sanitized.fa"
2023-07-05 13:45:28.718016: Running the command: "cactus_analyseAssembly HG01978.1.sanitized.fa"
2023-07-05 13:45:28.720233: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/47e5/27f4/tmpvmnkpu_b/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p'" in 2.1229 seconds and 154.0 Mi memory
2023-07-05 13:45:28.728401: Running the command: "cactus_analyseAssembly HG01258.2.sanitized.fa"
2023-07-05 13:45:28.729176: Successfully ran: "cactus_analyseAssembly HG03540.2.sanitized.fa" in 0.5149 seconds and 57.0 Mi memory
2023-07-05 13:45:28.739099: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/23b72333d49354f6803261140c326f0f/ecba/5a06/tmp7z1godyt/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p'" in 2.0992 seconds and 154.0 Mi memory
2023-07-05 13:45:28.743129: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 0.538 seconds and 60.6 Mi memory
2023-07-05 13:45:28.745351: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 0.5198 seconds and 58.0 Mi memory
2023-07-05 13:45:28.745420: Successfully ran: "cactus_analyseAssembly HG00735.2.sanitized.fa" in 1.3759 seconds and 153.9 Mi memory
2023-07-05 13:45:28.746292: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 0.5279 seconds and 51.8 Mi memory
2023-07-05 13:45:28.747227: Running the command: "cactus_analyseAssembly HG00735.2.sanitized.fa"
2023-07-05 13:45:28.747796: Successfully ran: "cactus_analyseAssembly HG00735.2.sanitized.fa" in 0.5665 seconds and 153.9 Mi memory
2023-07-05 13:45:28.778962: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/601b/09c2/tmpe33c_ycm/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p'" in 2.3106 seconds and 154.0 Mi memory
2023-07-05 13:45:28.786034: Successfully ran: "cactus_analyseAssembly HG02486.2.sanitized.fa" in 0.5698 seconds and 51.8 Mi memory
2023-07-05 13:45:28.790117: Running the command: "cactus_analyseAssembly HG01123.1.sanitized.fa"
2023-07-05 13:45:28.791758: Successfully ran: "cactus_analyseAssembly HG02572.2.sanitized.fa" in 0.4903 seconds and 51.8 Mi memory
2023-07-05 13:45:28.794467: Successfully ran: "cactus_analyseAssembly HG02622.2.sanitized.fa" in 0.5745 seconds and 153.9 Mi memory
2023-07-05 13:45:28.838053: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/2072/bec0/tmpe3x3obv_/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p'" in 2.163 seconds and 5.1 Mi memory
2023-07-05 13:45:28.849812: Running the command: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa"
2023-07-05 13:45:28.869762: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/cfe5/728c/tmpt_1s01cp/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p'" in 2.3303 seconds and 154.0 Mi memory
2023-07-05 13:45:28.875931: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/acf1/a114/tmppryfbrc1/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p'" in 1.7891 seconds and 58.6 Mi memory
2023-07-05 13:45:28.880771: Running the command: "cactus_analyseAssembly HG01358.2.sanitized.fa"
2023-07-05 13:45:28.884333: Running the command: "cactus_analyseAssembly HG00673.2.sanitized.fa"
2023-07-05 13:45:28.886460: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/961c/c84d/tmp0bwy9hlx/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p'" in 2.3025 seconds and 68.9 Mi memory
2023-07-05 13:45:28.897808: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/7260/7d66/tmp5o5b9cvo/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p'" in 2.3251 seconds and 154.0 Mi memory
2023-07-05 13:45:28.907292: Running the command: "cactus_analyseAssembly HG01258.1.sanitized.fa"
2023-07-05 13:45:28.910240: Running the command: "cactus_analyseAssembly HG02572.1.sanitized.fa"
2023-07-05 13:45:28.916643: Successfully ran: "cactus_analyseAssembly HG02257.2.sanitized.fa" in 0.649 seconds and 51.9 Mi memory
2023-07-05 13:45:28.948589: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/d6c7/9fd6/tmpzfyrdkig/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p'" in 2.2903 seconds and 61.7 Mi memory
2023-07-05 13:45:28.959264: Running the command: "cactus_analyseAssembly HG01109.2.sanitized.fa"
2023-07-05 13:45:28.960793: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/f730/1db2/tmpfhxmh9r6/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p'" in 2.2935 seconds and 55.8 Mi memory
2023-07-05 13:45:28.963330: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/af76/87f6/tmpzqbt3nsr/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p'" in 2.353 seconds and 51.9 Mi memory
2023-07-05 13:45:28.963448: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/9f16/753e/tmpjaibs96n/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p'" in 2.2935 seconds and 60.4 Mi memory
2023-07-05 13:45:28.967399: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/6ddd/95ed/tmpi9jar0jk/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p'" in 2.4035 seconds and 154.0 Mi memory
2023-07-05 13:45:28.971595: Running the command: "cactus_analyseAssembly HG03486.2.sanitized.fa"
2023-07-05 13:45:28.974696: Running the command: "cactus_analyseAssembly HG01175.1.sanitized.fa"
2023-07-05 13:45:28.974726: Running the command: "cactus_analyseAssembly HG03579.2.sanitized.fa"
2023-07-05 13:45:28.978691: Running the command: "cactus_analyseAssembly HG01123.2.sanitized.fa"
2023-07-05 13:45:28.978818: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/a0fb/716e/tmp4q2bfk6e/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p'" in 2.3416 seconds and 52.7 Mi memory
2023-07-05 13:45:28.989341: Running the command: "cactus_analyseAssembly HG02886.2.sanitized.fa"
2023-07-05 13:45:28.995172: Successfully ran: "cactus_analyseAssembly HG01071.2.sanitized.fa" in 0.5761 seconds and 153.9 Mi memory
2023-07-05 13:45:28.999204: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/b5da/690f/tmpyp5u_klq/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p'" in 2.4334 seconds and 61.4 Mi memory
2023-07-05 13:45:28.999824: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/07c2/2d5a/tmpuv_5intl/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p'" in 2.3601 seconds and 52.7 Mi memory
2023-07-05 13:45:29.010075: Running the command: "cactus_analyseAssembly HG03579.1.sanitized.fa"
2023-07-05 13:45:29.011123: Running the command: "cactus_analyseAssembly HG03098.1.sanitized.fa"
Got message from job at time 07-05-2023 13:45:29: Assembly stats for HG02622.1: Input-sample: HG02622.1.sanitized.fa Total-sequences: 3 Total-length: 79116482 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 55384504 Median-sequence-length: 17132481 Max-sequence-length: 55384504 Min-sequence-length: 6599497

2023-07-05 13:45:29.029461: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/7cd4/c83e/tmpcx6l1boi/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p'" in 2.3645 seconds and 154.0 Mi memory
2023-07-05 13:45:29.032265: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/bbc1/0861/tmp3d6euqo9/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p'" in 2.3702 seconds and 154.0 Mi memory
2023-07-05 13:45:29.039958: Running the command: "cactus_analyseAssembly HG00438.1.sanitized.fa"
2023-07-05 13:45:29.042616: Running the command: "cactus_analyseAssembly HG02630.2.sanitized.fa"
Got message from job at time 07-05-2023 13:45:29: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 80373285 Proportion-repeat-masked: 0.003530 ProportionNs: 0.003530 Total-Ns: 283680 N50: 80373285 Median-sequence-length: 80373285 Max-sequence-length: 80373285 Min-sequence-length: 80373285

2023-07-05 13:45:29.062933: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/965e/09b8/tmpm9q7es1y/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p'" in 2.4108 seconds and 154.0 Mi memory
2023-07-05 13:45:29.073079: Running the command: "cactus_analyseAssembly HG00621.1.sanitized.fa"
Got message from job at time 07-05-2023 13:45:29: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 4 Total-length: 82046099 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 47320712 Median-sequence-length: 19433621 Max-sequence-length: 47320712 Min-sequence-length: 203730

2023-07-05 13:45:29.090130: Successfully ran: "cactus_analyseAssembly HG02622.1.sanitized.fa" in 1.2017 seconds and 153.9 Mi memory
2023-07-05 13:45:29.115012: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/7a5e/50ab/tmp37s3mbq5/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p'" in 2.4424 seconds and 460.2 Mi memory
2023-07-05 13:45:29.125548: Running the command: "cactus_analyseAssembly CHM13.sanitized.fa"
2023-07-05 13:45:29.151891: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/a3c6/422f/tmp9ihe15xx/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p'" in 2.5861 seconds and 154.0 Mi memory
2023-07-05 13:45:29.163743: Running the command: "cactus_analyseAssembly HG01891.1.sanitized.fa"
Got message from job at time 07-05-2023 13:45:29: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 3 Total-length: 78757711 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 55259329 Median-sequence-length: 22771128 Max-sequence-length: 55259329 Min-sequence-length: 727254

2023-07-05 13:45:29.169496: Successfully ran: "cactus_analyseAssembly NA21309.1.sanitized.fa" in 1.2887 seconds and 51.9 Mi memory
2023-07-05 13:45:29.179332: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/ea1f/251d/tmp6452eq9y/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p'" in 2.5919 seconds and 60.4 Mi memory
Got message from job at time 07-05-2023 13:45:29: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 6 Total-length: 80287632 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 46592869 Median-sequence-length: 15340666 Max-sequence-length: 46592869 Min-sequence-length: 69907

2023-07-05 13:45:29.179734: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/ec02/c5e2/tmpz8so52r4/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p'" in 2.5359 seconds and 51.9 Mi memory
2023-07-05 13:45:29.191211: Running the command: "cactus_analyseAssembly HG02818.2.sanitized.fa"
Got message from job at time 07-05-2023 13:45:29: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 5 Total-length: 79813836 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40337597 Median-sequence-length: 10908398 Max-sequence-length: 40337597 Min-sequence-length: 6312884

2023-07-05 13:45:29.192215: Running the command: "cactus_analyseAssembly NA21309.2.sanitized.fa"
2023-07-05 13:45:29.212552: Successfully ran: "cactus_analyseAssembly NA18906.2.sanitized.fa" in 1.3434 seconds and 153.9 Mi memory
2023-07-05 13:45:29.223275: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/7a77/2a11/tmpy7yoqqb7/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p'" in 2.5586 seconds and 51.9 Mi memory
2023-07-05 13:45:29.234789: Running the command: "cactus_analyseAssembly HG02109.1.sanitized.fa"
2023-07-05 13:45:29.238672: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/e965/d8f7/tmpjvoa_zer/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p'" in 2.5738 seconds and 51.9 Mi memory
2023-07-05 13:45:29.241922: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/899d/2dad/tmp_7b8dtog/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p'" in 2.6237 seconds and 153.9 Mi memory
2023-07-05 13:45:29.242397: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/719c/7faf/tmp6_rqmvh4/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p'" in 2.571 seconds and 26.4 Mi memory
2023-07-05 13:45:29.247106: Successfully ran: "cactus_analyseAssembly HG01106.1.sanitized.fa" in 1.3373 seconds and 77.1 Mi memory
2023-07-05 13:45:29.247447: Successfully ran: "cactus_analyseAssembly HG01952.2.sanitized.fa" in 1.3426 seconds and 153.9 Mi memory
2023-07-05 13:45:29.249043: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/8051/6ce3/tmpv3il4310/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p'" in 2.5794 seconds and 68.9 Mi memory
2023-07-05 13:45:29.251199: Running the command: "cactus_analyseAssembly HG02145.1.sanitized.fa"
2023-07-05 13:45:29.254924: Running the command: "cactus_analyseAssembly NA20129.2.sanitized.fa"
2023-07-05 13:45:29.257116: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/bdb9/61aa/tmpq5qh0083/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p'" in 2.6508 seconds and 51.9 Mi memory
2023-07-05 13:45:29.262116: Running the command: "cactus_analyseAssembly HG00733.1.sanitized.fa"
2023-07-05 13:45:29.263362: Running the command: "cactus_analyseAssembly HG02559.2.sanitized.fa"
2023-07-05 13:45:29.266147: Successfully ran: "cactus_analyseAssembly HG03486.1.sanitized.fa" in 1.3381 seconds and 51.9 Mi memory
2023-07-05 13:45:29.269597: Running the command: "cactus_analyseAssembly HG03486.1.sanitized.fa"
2023-07-05 13:45:29.282753: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/e7b7/a12c/tmp_d93oa25/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p'" in 2.6143 seconds and 75.9 Mi memory
2023-07-05 13:45:29.282815: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/d01d/3dfe/tmpltdu4_zl/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p'" in 2.6236 seconds and 154.0 Mi memory
2023-07-05 13:45:29.284233: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/452c/a4fb/tmpr__aotlf/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p'" in 2.6195 seconds and 62.0 Mi memory
2023-07-05 13:45:29.289607: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/d68e/3463/tmpmzbn7lpw/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p'" in 2.6154 seconds and 51.9 Mi memory
2023-07-05 13:45:29.291322: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/7758/721a/tmphz40l9m8/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p'" in 2.6248 seconds and 153.9 Mi memory
2023-07-05 13:45:29.294720: Running the command: "cactus_analyseAssembly HG01243.1.sanitized.fa"
2023-07-05 13:45:29.294831: Running the command: "cactus_analyseAssembly HG02148.1.sanitized.fa"
2023-07-05 13:45:29.297017: Running the command: "cactus_analyseAssembly HG03453.1.sanitized.fa"
2023-07-05 13:45:29.297681: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/a3b1/6739/tmpakkbak9n/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p'" in 2.6434 seconds and 154.0 Mi memory
2023-07-05 13:45:29.301354: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/0c1e/c130/tmpa_oip1mp/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p'" in 2.6615 seconds and 154.0 Mi memory
2023-07-05 13:45:29.302117: Running the command: "cactus_analyseAssembly NA20129.1.sanitized.fa"
2023-07-05 13:45:29.302902: Running the command: "cactus_analyseAssembly HG00735.2.sanitized.fa"
Got message from job at time 07-05-2023 13:45:29: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 15 Total-length: 85360934 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19458052 Median-sequence-length: 1529405 Max-sequence-length: 39757147 Min-sequence-length: 34360

2023-07-05 13:45:29.309360: Running the command: "cactus_analyseAssembly HG02486.1.sanitized.fa"
2023-07-05 13:45:29.312307: Running the command: "cactus_analyseAssembly HG03516.1.sanitized.fa"
2023-07-05 13:45:29.314017: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/63c2/c3a1/tmp5v2_r2ho/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p'" in 2.642 seconds and 154.0 Mi memory
2023-07-05 13:45:29.315889: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/352f/5c6a/tmpruuo_29t/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p'" in 2.6327 seconds and 51.9 Mi memory
2023-07-05 13:45:29.317933: Successfully ran: "cactus_analyseAssembly HG02818.1.sanitized.fa" in 1.3336 seconds and 57.3 Mi memory
2023-07-05 13:45:29.319518: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/76e9/93cd/tmptf7idr36/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p'" in 2.6411 seconds and 51.9 Mi memory
2023-07-05 13:45:29.324220: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/475e/30f2/tmplpd23t1n/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p'" in 2.6669 seconds and 62.5 Mi memory
2023-07-05 13:45:29.325821: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/7415/3c54/tmpemf04i3r/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p'" in 2.6556 seconds and 154.0 Mi memory
2023-07-05 13:45:29.325861: Running the command: "cactus_analyseAssembly HG02572.2.sanitized.fa"
2023-07-05 13:45:29.327265: Running the command: "cactus_analyseAssembly HG02818.1.sanitized.fa"
2023-07-05 13:45:29.332426: Running the command: "cactus_analyseAssembly HG03453.2.sanitized.fa"
2023-07-05 13:45:29.332658: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/8e4c/ecbd/tmpr105t_og/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p'" in 2.6944 seconds and 154.0 Mi memory
2023-07-05 13:45:29.334893: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/f458/4161/tmpmgazcjm_/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p'" in 2.6643 seconds and 154.0 Mi memory
2023-07-05 13:45:29.335034: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/4183/3ece/tmppnel9rfk/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p'" in 2.6852 seconds and 154.0 Mi memory
2023-07-05 13:45:29.335856: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/1275/b4b1/tmpjzxfgvie/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p'" in 2.6639 seconds and 154.0 Mi memory
2023-07-05 13:45:29.337300: Running the command: "cactus_analyseAssembly HG01109.1.sanitized.fa"
2023-07-05 13:45:29.338494: Running the command: "cactus_analyseAssembly HG01928.2.sanitized.fa"
2023-07-05 13:45:29.340890: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/d479/de89/tmpjca1v5hu/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p'" in 2.6729 seconds and 154.0 Mi memory
2023-07-05 13:45:29.346518: Running the command: "cactus_analyseAssembly HG02055.1.sanitized.fa"
2023-07-05 13:45:29.346691: Running the command: "cactus_analyseAssembly HG01978.1.sanitized.fa"
2023-07-05 13:45:29.348158: Running the command: "cactus_analyseAssembly HG01071.2.sanitized.fa"
2023-07-05 13:45:29.348214: Running the command: "cactus_analyseAssembly HG01071.1.sanitized.fa"
2023-07-05 13:45:29.353709: Running the command: "cactus_analyseAssembly NA18906.2.sanitized.fa"
2023-07-05 13:45:29.363550: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/5d1b/bebb/tmpmsuu4gpj/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p'" in 2.6968 seconds and 76.4 Mi memory
2023-07-05 13:45:29.372622: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/4c8f/1f2a/tmpy95u48zu/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p'" in 2.7367 seconds and 72.8 Mi memory
2023-07-05 13:45:29.375932: Running the command: "cactus_analyseAssembly HG02622.1.sanitized.fa"
2023-07-05 13:45:29.383940: Running the command: "cactus_analyseAssembly HG02886.1.sanitized.fa"
2023-07-05 13:45:29.407597: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/e188/a3ae/tmpjfkw3mzw/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 2.7527 seconds and 460.2 Mi memory
2023-07-05 13:45:29.407054: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/97f7/bf2e/tmp4a2z051g/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p'" in 1.4478 seconds and 54.0 Mi memory
2023-07-05 13:45:29.414649: Running the command: "cactus_analyseAssembly HG02717.2.sanitized.fa"
2023-07-05 13:45:29.418532: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 1.4037 seconds and 153.9 Mi memory
2023-07-05 13:45:29.418116: Running the command: "cactus_analyseAssembly GRCh38.sanitized.fa"
2023-07-05 13:45:29.423638: Successfully ran: "cactus_analyseAssembly HG01123.1.sanitized.fa" in 1.37 seconds and 153.9 Mi memory
2023-07-05 13:45:29.423486: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9d87903a2d55576d88b97df41ad796d4/85df/85e2/tmp046xmloj/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p'" in 2.7636 seconds and 62.0 Mi memory
2023-07-05 13:45:29.426532: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0f71/d8b4/tmpb6x9oqla/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 1.4321 seconds and 51.9 Mi memory
2023-07-05 13:45:29.427054: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f342/ff6d/tmp_3_qzpdk/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p'" in 1.4334 seconds and 51.9 Mi memory
2023-07-05 13:45:29.435040: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
2023-07-05 13:45:29.434136: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-05 13:45:29.434855: Running the command: "cactus_analyseAssembly HG02818.1.sanitized.fa"
2023-07-05 13:45:29.440990: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/087a/52ce/tmpkh2lze1n/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p'" in 1.4415 seconds and 51.9 Mi memory
2023-07-05 13:45:29.444146: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b62b/0396/tmpwqdup5bf/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p'" in 1.4637 seconds and 51.9 Mi memory
2023-07-05 13:45:29.448998: Running the command: "cactus_analyseAssembly HG03579.1.sanitized.fa"
2023-07-05 13:45:29.453594: Successfully ran: "cactus_analyseAssembly HG01978.2.sanitized.fa" in 1.3772 seconds and 153.9 Mi memory
2023-07-05 13:45:29.452858: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6b98/84c3/tmph9rwhz8q/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p'" in 1.466 seconds and 51.9 Mi memory
2023-07-05 13:45:29.456705: Running the command: "cactus_analyseAssembly HG01109.1.sanitized.fa"
2023-07-05 13:45:29.459315: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9ca0/a3e1/tmpoj7tyghw/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p'" in 1.4607 seconds and 51.9 Mi memory
2023-07-05 13:45:29.459549: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ea8/b1b4/tmpm0bclqah/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p'" in 1.4675 seconds and 51.9 Mi memory
2023-07-05 13:45:29.460390: Running the command: "cactus_analyseAssembly HG02818.2.sanitized.fa"
2023-07-05 13:45:29.466904: Running the command: "cactus_analyseAssembly HG02723.2.sanitized.fa"
2023-07-05 13:45:29.467027: Running the command: "cactus_analyseAssembly NA21309.2.sanitized.fa"
2023-07-05 13:45:29.471002: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/bf82/6205/tmp88kx0gzw/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p'" in 1.472 seconds and 54.7 Mi memory
2023-07-05 13:45:29.473462: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/585e/b766/tmpbwizf8er/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 1.5058 seconds and 153.9 Mi memory
2023-07-05 13:45:29.475219: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ac0d/1acd/tmpf6_5c3_3/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p'" in 1.5277 seconds and 51.9 Mi memory
2023-07-05 13:45:29.476505: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/cfdc/3307/tmplve6yr3j/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p'" in 1.4767 seconds and 51.9 Mi memory
2023-07-05 13:45:29.479054: Running the command: "cactus_analyseAssembly HG03579.2.sanitized.fa"
2023-07-05 13:45:29.479479: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/995b/c0f4/tmp_i23vw1c/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p'" in 1.4947 seconds and 53.4 Mi memory
2023-07-05 13:45:29.481220: Running the command: "cactus_analyseAssembly GRCh38.sanitized.fa"
2023-07-05 13:45:29.483790: Running the command: "cactus_analyseAssembly HG01175.1.sanitized.fa"
2023-07-05 13:45:29.484634: Running the command: "cactus_analyseAssembly HG02572.2.sanitized.fa"
2023-07-05 13:45:29.487266: Running the command: "cactus_analyseAssembly HG02486.2.sanitized.fa"
2023-07-05 13:45:29.492219: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/873d/25a9/tmpkmj3qltl/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p'" in 1.4856 seconds and 58.4 Mi memory
2023-07-05 13:45:29.495515: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/d800/6250/tmpoxknzs1t/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p'" in 1.5084 seconds and 51.9 Mi memory
2023-07-05 13:45:29.498156: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1e3d/7e79/tmpc803u9br/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p'" in 1.4987 seconds and 53.7 Mi memory
2023-07-05 13:45:29.499985: Running the command: "cactus_analyseAssembly HG02559.1.sanitized.fa"
2023-07-05 13:45:29.500980: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1ef7/5379/tmp693v6x2b/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p'" in 1.512 seconds and 53.7 Mi memory
2023-07-05 13:45:29.503825: Running the command: "cactus_analyseAssembly HG00673.2.sanitized.fa"
2023-07-05 13:45:29.504782: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/22fd/29c6/tmpvbm36lhr/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p'" in 1.5202 seconds and 154.0 Mi memory
2023-07-05 13:45:29.506691: Running the command: "cactus_analyseAssembly HG00735.1.sanitized.fa"
2023-07-05 13:45:29.508630: Running the command: "cactus_analyseAssembly HG02055.2.sanitized.fa"
2023-07-05 13:45:29.509228: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7a82/5336/tmp32ldvkj4/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p'" in 1.5114 seconds and 53.7 Mi memory
2023-07-05 13:45:29.510738: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/701d/c322/tmpplvmgwpp/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p'" in 1.5102 seconds and 51.9 Mi memory
2023-07-05 13:45:29.511019: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/34f7/2319/tmpd6_21z92/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p'" in 1.5553 seconds and 53.7 Mi memory
2023-07-05 13:45:29.511736: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1400/1fe9/tmp10b7wjc6/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p'" in 1.5122 seconds and 54.0 Mi memory
2023-07-05 13:45:29.512991: Running the command: "cactus_analyseAssembly HG01258.2.sanitized.fa"
2023-07-05 13:45:29.513403: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/68c0/66d5/tmpp342hzll/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p'" in 1.5132 seconds and 154.0 Mi memory
2023-07-05 13:45:29.518441: Running the command: "cactus_analyseAssembly HG03492.1.sanitized.fa"
2023-07-05 13:45:29.518898: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a106/9622/tmp2gd_nmho/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p'" in 1.5185 seconds and 154.0 Mi memory
2023-07-05 13:45:29.519292: Running the command: "cactus_analyseAssembly HG02572.1.sanitized.fa"
2023-07-05 13:45:29.519413: Running the command: "cactus_analyseAssembly NA18906.1.sanitized.fa"
2023-07-05 13:45:29.521249: Running the command: "cactus_analyseAssembly HG03453.1.sanitized.fa"
2023-07-05 13:45:29.521518: Running the command: "cactus_analyseAssembly HG00438.2.sanitized.fa"
2023-07-05 13:45:29.526113: Running the command: "cactus_analyseAssembly HG00733.1.sanitized.fa"
2023-07-05 13:45:29.528194: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e1ac/1bfd/tmpz_7ypet_/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p'" in 1.5361 seconds and 154.0 Mi memory
2023-07-05 13:45:29.531226: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f396/c4fa/tmp_n5pvf3z/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p'" in 1.5391 seconds and 51.9 Mi memory
2023-07-05 13:45:29.535520: Running the command: "cactus_analyseAssembly HG03516.1.sanitized.fa"
2023-07-05 13:45:29.538713: Running the command: "cactus_analyseAssembly HG01243.1.sanitized.fa"
2023-07-05 13:45:29.538928: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a674/0e23/tmpmxwta1fg/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p'" in 1.5463 seconds and 154.0 Mi memory
2023-07-05 13:45:29.540457: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2f2b/a37e/tmpqny813n4/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p'" in 1.5991 seconds and 154.0 Mi memory
2023-07-05 13:45:29.547018: Running the command: "cactus_analyseAssembly HG01258.1.sanitized.fa"
2023-07-05 13:45:29.547799: Running the command: "cactus_analyseAssembly HG01891.2.sanitized.fa"
2023-07-05 13:45:29.556034: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8f2f/c3be/tmpsbe7wrsg/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p'" in 1.6438 seconds and 154.0 Mi memory
2023-07-05 13:45:29.557979: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c625/8391/tmpbdy7thpz/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p'" in 1.5681 seconds and 51.9 Mi memory
2023-07-05 13:45:29.563403: Running the command: "cactus_analyseAssembly HG01123.2.sanitized.fa"
2023-07-05 13:45:29.564945: Running the command: "cactus_analyseAssembly HG03492.2.sanitized.fa"
2023-07-05 13:45:29.612950: Successfully ran: "cactus_analyseAssembly HG02148.1.sanitized.fa" in 1.026 seconds and 53.7 Mi memory
Got message from job at time 07-05-2023 13:45:29: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 16 Total-length: 85949790 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20408155 Median-sequence-length: 706045 Max-sequence-length: 26020074 Min-sequence-length: 18140

2023-07-05 13:45:29.686929: Successfully ran: "cactus_analyseAssembly HG02622.1.sanitized.fa" in 1.0822 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:45:29: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 11 Total-length: 90066535 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23115113 Median-sequence-length: 6182219 Max-sequence-length: 23827809 Min-sequence-length: 555130

Got message from job at time 07-05-2023 13:45:29: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 8 Total-length: 88020504 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 46768653 Median-sequence-length: 4049865 Max-sequence-length: 46768653 Min-sequence-length: 175133

2023-07-05 13:45:29.763947: Successfully ran: "cactus_analyseAssembly HG01243.2.sanitized.fa" in 1.0704 seconds and 153.9 Mi memory
2023-07-05 13:45:29.768303: Successfully ran: "cactus_analyseAssembly HG02886.2.sanitized.fa" in 1.2034 seconds and 51.9 Mi memory
2023-07-05 13:45:29.770283: Successfully ran: "cactus_analyseAssembly NA20129.1.sanitized.fa" in 1.2133 seconds and 51.9 Mi memory
2023-07-05 13:45:29.777632: Successfully ran: "cactus_analyseAssembly HG02257.2.sanitized.fa" in 1.2251 seconds and 51.9 Mi memory
2023-07-05 13:45:29.782815: Successfully ran: "cactus_analyseAssembly HG03453.1.sanitized.fa" in 1.2064 seconds and 51.9 Mi memory
2023-07-05 13:45:29.783561: Successfully ran: "cactus_analyseAssembly HG02723.1.sanitized.fa" in 1.2035 seconds and 51.9 Mi memory
2023-07-05 13:45:29.786551: Successfully ran: "cactus_analyseAssembly HG02559.2.sanitized.fa" in 1.2364 seconds and 57.8 Mi memory
2023-07-05 13:45:29.788114: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/58d8/a6d9/tmpx0vwiltl/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p"
2023-07-05 13:45:29.793568: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 1.192 seconds and 51.9 Mi memory
2023-07-05 13:45:29.793927: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 1.2024 seconds and 58.3 Mi memory
2023-07-05 13:45:29.797858: Successfully ran: "cactus_analyseAssembly HG02257.1.sanitized.fa" in 1.2522 seconds and 70.7 Mi memory
2023-07-05 13:45:29.800330: Successfully ran: "cactus_analyseAssembly HG01106.1.sanitized.fa" in 1.2284 seconds and 68.9 Mi memory
2023-07-05 13:45:29.804528: Successfully ran: "cactus_analyseAssembly HG01361.1.sanitized.fa" in 1.2067 seconds and 65.5 Mi memory
2023-07-05 13:45:29.807165: Successfully ran: "cactus_analyseAssembly HG00741.2.sanitized.fa" in 1.2166 seconds and 52.1 Mi memory
2023-07-05 13:45:29.810824: Successfully ran: "cactus_analyseAssembly HG03579.2.sanitized.fa" in 1.1985 seconds and 51.9 Mi memory
2023-07-05 13:45:29.820270: Successfully ran: "cactus_analyseAssembly HG03486.2.sanitized.fa" in 1.1973 seconds and 51.9 Mi memory
2023-07-05 13:45:29.832792: Successfully ran: "cactus_analyseAssembly HG02145.1.sanitized.fa" in 1.1949 seconds and 51.9 Mi memory
2023-07-05 13:45:29.836249: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 1.1985 seconds and 51.9 Mi memory
2023-07-05 13:45:29.839532: Successfully ran: "cactus_analyseAssembly HG00741.1.sanitized.fa" in 1.233 seconds and 73.3 Mi memory
2023-07-05 13:45:29.853460: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 1.2564 seconds and 153.9 Mi memory
2023-07-05 13:45:29.854226: Successfully ran: "cactus_analyseAssembly HG02486.2.sanitized.fa" in 1.2579 seconds and 153.9 Mi memory
2023-07-05 13:45:29.857659: Successfully ran: "cactus_analyseAssembly HG03540.1.sanitized.fa" in 1.2326 seconds and 51.9 Mi memory
2023-07-05 13:45:29.858642: Successfully ran: "cactus_analyseAssembly HG01175.2.sanitized.fa" in 1.2455 seconds and 153.9 Mi memory
2023-07-05 13:45:29.861219: Successfully ran: "cactus_analyseAssembly HG03098.2.sanitized.fa" in 1.2435 seconds and 153.9 Mi memory
2023-07-05 13:45:29.864645: Successfully ran: "cactus_analyseAssembly HG02486.1.sanitized.fa" in 1.2539 seconds and 153.9 Mi memory
2023-07-05 13:45:29.869677: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 1.2587 seconds and 153.9 Mi memory
2023-07-05 13:45:29.880770: Successfully ran: "cactus_analyseAssembly HG02886.1.sanitized.fa" in 1.2053 seconds and 53.9 Mi memory
2023-07-05 13:45:29.882398: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 1.2492 seconds and 153.9 Mi memory
2023-07-05 13:45:29.884390: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 1.2608 seconds and 153.9 Mi memory
2023-07-05 13:45:29.889915: Successfully ran: "cactus_analyseAssembly HG02559.1.sanitized.fa" in 1.2541 seconds and 153.9 Mi memory
2023-07-05 13:45:29.897795: Successfully ran: "cactus_analyseAssembly HG00438.2.sanitized.fa" in 1.2416 seconds and 153.9 Mi memory
2023-07-05 13:45:29.899985: Successfully ran: "cactus_analyseAssembly HG01952.1.sanitized.fa" in 1.2432 seconds and 153.9 Mi memory
2023-07-05 13:45:29.899342: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4fd9/37c7/tmp8z3qjden/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p'" in 1.9728 seconds and 51.9 Mi memory
2023-07-05 13:45:29.906543: Running the command: "cactus_analyseAssembly NA21309.1.sanitized.fa"
2023-07-05 13:45:29.917287: Successfully ran: "cactus_analyseAssembly HG02109.1.sanitized.fa" in 1.2831 seconds and 51.9 Mi memory
2023-07-05 13:45:29.925177: Successfully ran: "cactus_analyseAssembly HG03492.2.sanitized.fa" in 1.2782 seconds and 51.9 Mi memory
2023-07-05 13:45:29.932860: Successfully ran: "cactus_analyseAssembly CHM13.sanitized.fa" in 1.2809 seconds and 165.0 Mi memory
2023-07-05 13:45:29.934112: Successfully ran: "cactus_analyseAssembly HG01891.2.sanitized.fa" in 1.2506 seconds and 153.9 Mi memory
2023-07-05 13:45:29.941208: Successfully ran: "cactus_analyseAssembly HG02055.1.sanitized.fa" in 1.2953 seconds and 52.1 Mi memory
2023-07-05 13:45:29.943723: Successfully ran: "cactus_analyseAssembly HG02055.2.sanitized.fa" in 1.2752 seconds and 51.9 Mi memory
2023-07-05 13:45:29.945389: Successfully ran: "cactus_analyseAssembly NA21309.1.sanitized.fa" in 1.2995 seconds and 51.9 Mi memory
2023-07-05 13:45:29.949219: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 1.2883 seconds and 58.8 Mi memory
2023-07-05 13:45:29.956061: Successfully ran: "cactus_analyseAssembly HG03579.1.sanitized.fa" in 1.2725 seconds and 51.9 Mi memory
2023-07-05 13:45:29.960156: Successfully ran: "cactus_analyseAssembly HG02630.1.sanitized.fa" in 1.298 seconds and 51.9 Mi memory
2023-07-05 13:45:29.962672: Successfully ran: "cactus_analyseAssembly HG03540.2.sanitized.fa" in 1.2798 seconds and 51.9 Mi memory
2023-07-05 13:45:29.967636: Successfully ran: "cactus_analyseAssembly HG01243.2.sanitized.fa" in 1.2965 seconds and 67.3 Mi memory
2023-07-05 13:45:29.972886: Successfully ran: "cactus_analyseAssembly HG02148.1.sanitized.fa" in 1.2913 seconds and 58.8 Mi memory
2023-07-05 13:45:29.997981: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 1.2916 seconds and 51.9 Mi memory
2023-07-05 13:45:30.010953: Successfully ran: "cactus_analyseAssembly HG02572.2.sanitized.fa" in 1.3431 seconds and 153.9 Mi memory
2023-07-05 13:45:30.022189: Successfully ran: "cactus_analyseAssembly HG02717.1.sanitized.fa" in 1.3315 seconds and 153.9 Mi memory
2023-07-05 13:45:30.032542: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 1.3408 seconds and 153.9 Mi memory
2023-07-05 13:45:30.034492: Successfully ran: "cactus_analyseAssembly HG01891.1.sanitized.fa" in 1.3379 seconds and 153.9 Mi memory
2023-07-05 13:45:30.040274: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/ca9e/e181/tmp_llsyq31/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 2.071 seconds and 51.9 Mi memory
2023-07-05 13:45:30.040623: Successfully ran: "cactus_analyseAssembly HG01358.1.sanitized.fa" in 1.3378 seconds and 153.9 Mi memory
2023-07-05 13:45:30.043803: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
2023-07-05 13:45:30.049061: Successfully ran: "cactus_analyseAssembly HG00735.1.sanitized.fa" in 1.3385 seconds and 153.9 Mi memory
2023-07-05 13:45:30.050419: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/48df/8fe3/tmpu9bpcrup/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p'" in 2.0763 seconds and 51.9 Mi memory
2023-07-05 13:45:30.052197: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 1.3363 seconds and 153.9 Mi memory
2023-07-05 13:45:30.052852: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/5326/609a/tmpulqs0ytx/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p'" in 2.0774 seconds and 51.8 Mi memory
2023-07-05 13:45:30.053994: Running the command: "cactus_analyseAssembly HG03453.2.sanitized.fa"
2023-07-05 13:45:30.054456: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 1.3382 seconds and 153.9 Mi memory
2023-07-05 13:45:30.056103: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/1bcd/b8aa/tmppa6tm83y/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p'" in 2.0933 seconds and 54.7 Mi memory
2023-07-05 13:45:30.056349: Running the command: "cactus_analyseAssembly HG02723.2.sanitized.fa"
2023-07-05 13:45:30.058823: Successfully ran: "cactus_analyseAssembly HG01978.1.sanitized.fa" in 1.3397 seconds and 153.9 Mi memory
2023-07-05 13:45:30.059506: Running the command: "cactus_analyseAssembly HG02080.1.sanitized.fa"
2023-07-05 13:45:30.062947: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 1.3335 seconds and 153.9 Mi memory
2023-07-05 13:45:30.081616: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/6778/60ed/tmpdkvzkt88/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p"
2023-07-05 13:45:30.084069: Successfully ran: "cactus_analyseAssembly HG00735.2.sanitized.fa" in 1.3358 seconds and 153.9 Mi memory
2023-07-05 13:45:30.128462: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/73e1/2efc/tmpo_o62jp1/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p'" in 2.1543 seconds and 153.9 Mi memory
2023-07-05 13:45:30.128893: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/73ec/43fe/tmp87nljlrb/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p'" in 2.1487 seconds and 153.9 Mi memory
2023-07-05 13:45:30.130026: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/4b00/0f43/tmp5p3eio2z/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p'" in 2.1405 seconds and 56.3 Mi memory
2023-07-05 13:45:30.131997: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/9a18/d97a/tmpza1z7lyv/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p'" in 2.1578 seconds and 154.0 Mi memory
2023-07-05 13:45:30.132361: Running the command: "cactus_analyseAssembly HG01071.1.sanitized.fa"
2023-07-05 13:45:30.132531: Running the command: "cactus_analyseAssembly HG02717.2.sanitized.fa"
2023-07-05 13:45:30.133856: Running the command: "cactus_analyseAssembly HG02572.1.sanitized.fa"
2023-07-05 13:45:30.133871: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/998f/f666/tmpx45bdf5m/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p'" in 2.1613 seconds and 154.0 Mi memory
2023-07-05 13:45:30.135685: Running the command: "cactus_analyseAssembly HG01978.2.sanitized.fa"
2023-07-05 13:45:30.137431: Running the command: "cactus_analyseAssembly HG01928.1.sanitized.fa"
2023-07-05 13:45:30.140529: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/2de9/9d1e/tmppr7s5zh7/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p'" in 1.7961 seconds and 69.2 Mi memory
2023-07-05 13:45:30.142934: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/dbcd/ce64/tmpo0t8vrxx/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p'" in 2.169 seconds and 154.0 Mi memory
2023-07-05 13:45:30.146315: Running the command: "cactus_analyseAssembly HG01258.1.sanitized.fa"
2023-07-05 13:45:30.148648: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 1.2634 seconds and 58.6 Mi memory
2023-07-05 13:45:30.151388: Running the command: "cactus_analyseAssembly HG01978.2.sanitized.fa"
2023-07-05 13:45:30.157571: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/f08e/ee2e/tmp4l3egc_0/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p'" in 1.7329 seconds and 4.8 Mi memory
2023-07-05 13:45:30.168564: Running the command: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa"
2023-07-05 13:45:30.177821: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/90b7/8860/tmpywapuqll/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p'" in 2.205 seconds and 154.0 Mi memory
2023-07-05 13:45:30.181170: Running the command: "cactus_analyseAssembly HG02622.2.sanitized.fa"
2023-07-05 13:45:30.193336: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/8a06/75c9/tmpeca_phrh/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p'" in 1.8222 seconds and 69.2 Mi memory
2023-07-05 13:45:30.203163: Running the command: "cactus_analyseAssembly HG00733.2.sanitized.fa"
2023-07-05 13:45:30.223564: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/301cd34e48f35ec096e0484cdd626e8b/040f/f16d/tmpq_bckj4v/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p'" in 2.2517 seconds and 153.9 Mi memory
2023-07-05 13:45:30.226889: Running the command: "cactus_analyseAssembly HG01928.2.sanitized.fa"
2023-07-05 13:45:30.227317: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e54c/e2b1/tmp_tw7e4ql/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p'" in 1.8221 seconds and 73.6 Mi memory
2023-07-05 13:45:30.231992: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/bd44/cfb1/tmpj0jl73ua/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 1.8625 seconds and 190.0 Mi memory
2023-07-05 13:45:30.237583: Running the command: "cactus_analyseAssembly HG02717.1.sanitized.fa"
Got message from job at time 07-05-2023 13:45:30: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 5 Total-length: 92434333 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26379428 Median-sequence-length: 23350458 Max-sequence-length: 30574743 Min-sequence-length: 1595419

2023-07-05 13:45:30.249096: Running the command: "cactus_analyseAssembly GRCh38.sanitized.fa"
2023-07-05 13:45:30.267670: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/25ab/7c0a/tmpuca7dkbc/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p'" in 1.8844 seconds and 51.9 Mi memory
2023-07-05 13:45:30.276775: Running the command: "cactus_analyseAssembly HG03486.2.sanitized.fa"
2023-07-05 13:45:30.304110: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/7007/5d40/tmp_xbef6pl/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p'" in 1.9225 seconds and 154.0 Mi memory
Got message from job at time 07-05-2023 13:45:30: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 11 Total-length: 96296416 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 21758417 Median-sequence-length: 4591672 Max-sequence-length: 34520987 Min-sequence-length: 26467

2023-07-05 13:45:30.312887: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/2fc4/0a21/tmp3x2mp947/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p'" in 1.9319 seconds and 154.0 Mi memory
2023-07-05 13:45:30.313753: Running the command: "cactus_analyseAssembly NA18906.1.sanitized.fa"
2023-07-05 13:45:30.319769: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/b1eb/8d0b/tmp4cfg1dfp/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p'" in 1.9457 seconds and 154.0 Mi memory
2023-07-05 13:45:30.322938: Running the command: "cactus_analyseAssembly HG00741.2.sanitized.fa"
2023-07-05 13:45:30.329566: Running the command: "cactus_analyseAssembly HG02257.1.sanitized.fa"
2023-07-05 13:45:30.346006: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/6d59/d584/tmppcbmrz7i/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p'" in 1.9371 seconds and 153.9 Mi memory
2023-07-05 13:45:30.360378: Running the command: "cactus_analyseAssembly HG01978.1.sanitized.fa"
2023-07-05 13:45:30.365662: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/d7a3/3349/tmp23_mk20q/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p'" in 1.9481 seconds and 153.9 Mi memory
2023-07-05 13:45:30.369365: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/853b/7cc6/tmpvp0o0qe6/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p'" in 2.0265 seconds and 51.9 Mi memory
2023-07-05 13:45:30.373163: Successfully ran: "cactus_analyseAssembly HG01123.1.sanitized.fa" in 1.5818 seconds and 153.9 Mi memory
2023-07-05 13:45:30.375544: Running the command: "cactus_analyseAssembly HG01361.2.sanitized.fa"
2023-07-05 13:45:30.377939: Running the command: "cactus_analyseAssembly NA20129.1.sanitized.fa"
Got message from job at time 07-05-2023 13:45:30: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 9 Total-length: 92004150 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19923395 Median-sequence-length: 5789223 Max-sequence-length: 34023321 Min-sequence-length: 177272

2023-07-05 13:45:30.398004: Successfully ran: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa" in 1.5473 seconds and 5.0 Mi memory
2023-07-05 13:45:30.399967: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/73cb/7c04/tmp9r1i3jto/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p'" in 2.0293 seconds and 51.9 Mi memory
2023-07-05 13:45:30.407894: Running the command: "cactus_analyseAssembly HG03540.2.sanitized.fa"
Got message from job at time 07-05-2023 13:45:30: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 96330374 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 96330374 Median-sequence-length: 96330374 Max-sequence-length: 96330374 Min-sequence-length: 96330374

2023-07-05 13:45:30.411308: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/beb3/cc94/tmpkui6wkpr/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p'" in 2.021 seconds and 51.9 Mi memory
2023-07-05 13:45:30.420482: Running the command: "cactus_analyseAssembly HG02145.1.sanitized.fa"
2023-07-05 13:45:30.427502: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0ad6/0631/tmpx4jgclcu/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p'" in 2.041 seconds and 51.9 Mi memory
2023-07-05 13:45:30.427883: Successfully ran: "cactus_analyseAssembly HG02717.2.sanitized.fa" in 1.0124 seconds and 53.9 Mi memory
2023-07-05 13:45:30.436564: Running the command: "cactus_analyseAssembly HG02886.1.sanitized.fa"
2023-07-05 13:45:30.438269: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/f181/96c9/tmpco6b_1ra/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p'" in 2.0387 seconds and 51.9 Mi memory
2023-07-05 13:45:30.440256: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/2974/1bda/tmpf1ubqwz8/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p'" in 2.067 seconds and 51.9 Mi memory
2023-07-05 13:45:30.443508: Successfully ran: "cactus_analyseAssembly HG02723.1.sanitized.fa" in 1.0085 seconds and 51.9 Mi memory
2023-07-05 13:45:30.445783: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0693/eea1/tmpr71une1j/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 2.0242 seconds and 56.0 Mi memory
2023-07-05 13:45:30.447705: Running the command: "cactus_analyseAssembly HG02148.1.sanitized.fa"
2023-07-05 13:45:30.448413: Running the command: "cactus_analyseAssembly HG02109.2.sanitized.fa"
2023-07-05 13:45:30.452379: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e9df/a539/tmptlst71o7/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p'" in 2.0371 seconds and 68.4 Mi memory
2023-07-05 13:45:30.455214: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-05 13:45:30.454058: Successfully ran: "cactus_analyseAssembly HG02818.1.sanitized.fa" in 1.0184 seconds and 51.9 Mi memory
2023-07-05 13:45:30.458500: Successfully ran: "cactus_analyseAssembly HG01358.2.sanitized.fa" in 1.5766 seconds and 153.9 Mi memory
2023-07-05 13:45:30.460379: Running the command: "cactus_analyseAssembly HG01175.1.sanitized.fa"
2023-07-05 13:45:30.460880: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/8dff/aafa/tmpyl9nnt8g/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p'" in 2.0533 seconds and 51.9 Mi memory
2023-07-05 13:45:30.464406: Successfully ran: "cactus_analyseAssembly HG03579.1.sanitized.fa" in 1.0147 seconds and 51.9 Mi memory
2023-07-05 13:45:30.469861: Running the command: "cactus_analyseAssembly HG02818.1.sanitized.fa"
2023-07-05 13:45:30.469050: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 1.0113 seconds and 51.9 Mi memory
2023-07-05 13:45:30.478242: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/88d2/9108/tmp3fqy49h0/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p'" in 2.083 seconds and 154.0 Mi memory
2023-07-05 13:45:30.479551: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 1.0184 seconds and 51.9 Mi memory
2023-07-05 13:45:30.483532: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/36ee/02f3/tmp9gd9dwbi/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p'" in 2.0745 seconds and 56.0 Mi memory
2023-07-05 13:45:30.484532: Successfully ran: "cactus_analyseAssembly HG01258.1.sanitized.fa" in 1.576 seconds and 68.9 Mi memory
2023-07-05 13:45:30.485597: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/12d7/22f0/tmpx_f24p38/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p'" in 2.0723 seconds and 154.0 Mi memory
2023-07-05 13:45:30.487791: Running the command: "cactus_analyseAssembly HG02148.2.sanitized.fa"
2023-07-05 13:45:30.486792: Successfully ran: "cactus_analyseAssembly NA21309.2.sanitized.fa" in 1.0189 seconds and 51.9 Mi memory
2023-07-05 13:45:30.488593: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ae7e/45e5/tmpt9jnevdy/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p'" in 2.1006 seconds and 154.0 Mi memory
2023-07-05 13:45:30.490540: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/afdd/5cce/tmps05543zf/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p'" in 2.0757 seconds and 68.9 Mi memory
2023-07-05 13:45:30.490006: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 1.0223 seconds and 51.9 Mi memory
2023-07-05 13:45:30.492614: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/17d8/9688/tmpw203cdbj/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p'" in 2.1084 seconds and 154.0 Mi memory
2023-07-05 13:45:30.493116: Running the command: "cactus_analyseAssembly HG01109.1.sanitized.fa"
2023-07-05 13:45:30.493378: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/bf43/d34a/tmpnk2_n9ny/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p'" in 2.0796 seconds and 51.9 Mi memory
2023-07-05 13:45:30.495278: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/8a78/1b26/tmpfp04vr0j/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p'" in 2.1055 seconds and 154.0 Mi memory
2023-07-05 13:45:30.495630: Running the command: "cactus_analyseAssembly HG01071.1.sanitized.fa"
2023-07-05 13:45:30.498624: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/4e9e/2c0d/tmpj0dm_z7d/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p'" in 2.1268 seconds and 153.9 Mi memory
2023-07-05 13:45:30.498847: Running the command: "cactus_analyseAssembly HG00438.1.sanitized.fa"
2023-07-05 13:45:30.500695: Running the command: "cactus_analyseAssembly HG03579.2.sanitized.fa"
2023-07-05 13:45:30.502295: Running the command: "cactus_analyseAssembly HG01175.2.sanitized.fa"
2023-07-05 13:45:30.503241: Running the command: "cactus_analyseAssembly HG01243.2.sanitized.fa"
2023-07-05 13:45:30.504742: Running the command: "cactus_analyseAssembly HG00741.1.sanitized.fa"
2023-07-05 13:45:30.505047: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 1.5938 seconds and 153.9 Mi memory
2023-07-05 13:45:30.505658: Successfully ran: "cactus_analyseAssembly HG01123.1.sanitized.fa" in 1.8206 seconds and 153.9 Mi memory
2023-07-05 13:45:30.506931: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/6808/6e86/tmp3ncvx051/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p'" in 2.0885 seconds and 55.8 Mi memory
2023-07-05 13:45:30.506994: Running the command: "cactus_analyseAssembly HG02559.2.sanitized.fa"
2023-07-05 13:45:30.510683: Successfully ran: "cactus_analyseAssembly HG02486.2.sanitized.fa" in 1.0224 seconds and 53.4 Mi memory
2023-07-05 13:45:30.511681: Successfully ran: "cactus_analyseAssembly HG03579.2.sanitized.fa" in 1.0318 seconds and 54.7 Mi memory
2023-07-05 13:45:30.514752: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/d798/3a97/tmpdso3qxmy/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p'" in 2.0985 seconds and 71.2 Mi memory
2023-07-05 13:45:30.515405: Running the command: "cactus_analyseAssembly HG03540.1.sanitized.fa"
2023-07-05 13:45:30.516932: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 1.5568 seconds and 61.6 Mi memory
2023-07-05 13:45:30.517358: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 1.0318 seconds and 51.9 Mi memory
2023-07-05 13:45:30.522308: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a4b8/1d0b/tmpw7eebfpp/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p'" in 2.1385 seconds and 154.0 Mi memory
2023-07-05 13:45:30.523763: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/b1e4/baf0/tmp1q6c8qmj/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p'" in 2.1099 seconds and 154.0 Mi memory
2023-07-05 13:45:30.523842: Running the command: "cactus_analyseAssembly HG03486.1.sanitized.fa"
2023-07-05 13:45:30.523094: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 1.0183 seconds and 51.9 Mi memory
2023-07-05 13:45:30.523956: Successfully ran: "cactus_analyseAssembly HG02572.2.sanitized.fa" in 1.0384 seconds and 51.9 Mi memory
2023-07-05 13:45:30.525403: Successfully ran: "cactus_analyseAssembly HG03486.2.sanitized.fa" in 1.5529 seconds and 55.7 Mi memory
2023-07-05 13:45:30.530355: Running the command: "cactus_analyseAssembly HG01106.1.sanitized.fa"
2023-07-05 13:45:30.532331: Running the command: "cactus_analyseAssembly HG02622.2.sanitized.fa"
2023-07-05 13:45:30.532529: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 1.0125 seconds and 53.7 Mi memory
2023-07-05 13:45:30.534165: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9267/faaf/tmpdw5jvch3/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p'" in 2.1236 seconds and 154.0 Mi memory
2023-07-05 13:45:30.534990: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 1.5596 seconds and 60.4 Mi memory
2023-07-05 13:45:30.536084: Successfully ran: "cactus_analyseAssembly HG03579.2.sanitized.fa" in 1.5604 seconds and 51.9 Mi memory
2023-07-05 13:45:30.538326: Successfully ran: "cactus_analyseAssembly HG00735.1.sanitized.fa" in 1.0308 seconds and 53.7 Mi memory
2023-07-05 13:45:30.540638: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/6010/2eb6/tmpeenhygv6/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p'" in 2.1293 seconds and 153.9 Mi memory
2023-07-05 13:45:30.539411: Successfully ran: "cactus_analyseAssembly HG02559.1.sanitized.fa" in 1.0386 seconds and 58.3 Mi memory
2023-07-05 13:45:30.542154: Running the command: "cactus_analyseAssembly HG00735.1.sanitized.fa"
2023-07-05 13:45:30.544561: Successfully ran: "cactus_analyseAssembly HG02055.2.sanitized.fa" in 1.0352 seconds and 53.7 Mi memory
2023-07-05 13:45:30.548816: Running the command: "cactus_analyseAssembly HG02559.1.sanitized.fa"
2023-07-05 13:45:30.549493: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/c7a0/127c/tmpcorrrznm/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p'" in 2.1603 seconds and 153.9 Mi memory
2023-07-05 13:45:30.549943: Successfully ran: "cactus_analyseAssembly HG03579.1.sanitized.fa" in 1.539 seconds and 61.4 Mi memory
2023-07-05 13:45:30.548659: Successfully ran: "cactus_analyseAssembly HG03453.1.sanitized.fa" in 1.0265 seconds and 53.7 Mi memory
2023-07-05 13:45:30.551186: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/5236/d353/tmpc1n57thc/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p'" in 2.1453 seconds and 153.9 Mi memory
2023-07-05 13:45:30.549847: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 1.0306 seconds and 51.9 Mi memory
2023-07-05 13:45:30.551643: Successfully ran: "cactus_analyseAssembly HG02886.2.sanitized.fa" in 1.5613 seconds and 52.6 Mi memory
2023-07-05 13:45:30.550491: Successfully ran: "cactus_analyseAssembly NA18906.1.sanitized.fa" in 1.0305 seconds and 53.9 Mi memory
2023-07-05 13:45:30.557370: Running the command: "cactus_analyseAssembly HG01952.1.sanitized.fa"
2023-07-05 13:45:30.558144: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/883c/21f4/tmp6_skkopy/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p'" in 2.1436 seconds and 153.9 Mi memory
2023-07-05 13:45:30.559683: Running the command: "cactus_analyseAssembly HG00438.2.sanitized.fa"
2023-07-05 13:45:30.564657: Successfully ran: "cactus_analyseAssembly HG01243.1.sanitized.fa" in 1.0251 seconds and 51.9 Mi memory
2023-07-05 13:45:30.566584: Running the command: "cactus_analyseAssembly HG02486.1.sanitized.fa"
2023-07-05 13:45:30.572218: Successfully ran: "cactus_analyseAssembly HG03098.1.sanitized.fa" in 1.5603 seconds and 52.6 Mi memory
2023-07-05 13:45:30.573197: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 1.0911 seconds and 153.9 Mi memory
2023-07-05 13:45:30.574861: Successfully ran: "cactus_analyseAssembly HG03492.2.sanitized.fa" in 1.0092 seconds and 51.9 Mi memory
2023-07-05 13:45:30.588654: Successfully ran: "cactus_analyseAssembly HG00733.1.sanitized.fa" in 1.0617 seconds and 153.9 Mi memory
2023-07-05 13:45:30.594783: Successfully ran: "cactus_analyseAssembly HG01123.2.sanitized.fa" in 1.6152 seconds and 153.9 Mi memory
2023-07-05 13:45:30.597745: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/58d8/a6d9/tmpx0vwiltl/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p'" in 0.8082 seconds and 24.9 Mi memory
2023-07-05 13:45:30.601268: Running the command: "cactus_analyseAssembly NA20129.2.sanitized.fa"
2023-07-05 13:45:30.602359: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/4dd9/3181/tmpx_jdbyac/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p'" in 2.1849 seconds and 154.0 Mi memory
2023-07-05 13:45:30.610579: Running the command: "cactus_analyseAssembly HG01952.2.sanitized.fa"
2023-07-05 13:45:30.614380: Successfully ran: "cactus_analyseAssembly HG01891.2.sanitized.fa" in 1.0657 seconds and 153.9 Mi memory
2023-07-05 13:45:30.615082: Successfully ran: "cactus_analyseAssembly HG00438.2.sanitized.fa" in 1.0927 seconds and 153.9 Mi memory
2023-07-05 13:45:30.615263: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 1.1014 seconds and 153.9 Mi memory
2023-07-05 13:45:30.618672: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 1.0823 seconds and 153.9 Mi memory
2023-07-05 13:45:30.624114: Successfully ran: "cactus_analyseAssembly HG01258.1.sanitized.fa" in 1.0763 seconds and 153.9 Mi memory
2023-07-05 13:45:30.640394: Successfully ran: "cactus_analyseAssembly HG01123.2.sanitized.fa" in 1.0758 seconds and 153.9 Mi memory
2023-07-05 13:45:30.645385: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 1.6019 seconds and 153.9 Mi memory
2023-07-05 13:45:30.652347: Successfully ran: "cactus_analyseAssembly HG00438.1.sanitized.fa" in 1.6116 seconds and 153.9 Mi memory
2023-07-05 13:45:30.694999: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 1.621 seconds and 153.9 Mi memory
2023-07-05 13:45:30.819982: Successfully ran: "cactus_analyseAssembly NA21309.2.sanitized.fa" in 1.6268 seconds and 51.9 Mi memory
2023-07-05 13:45:30.824321: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 1.632 seconds and 60.4 Mi memory
2023-07-05 13:45:30.853902: Successfully ran: "cactus_analyseAssembly HG01891.1.sanitized.fa" in 1.6891 seconds and 153.9 Mi memory
2023-07-05 13:45:30.890071: Successfully ran: "cactus_analyseAssembly HG02109.1.sanitized.fa" in 1.654 seconds and 51.9 Mi memory
2023-07-05 13:45:30.892278: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 1.6363 seconds and 26.3 Mi memory
2023-07-05 13:45:30.904648: Successfully ran: "cactus_analyseAssembly HG02145.1.sanitized.fa" in 1.6524 seconds and 51.9 Mi memory
2023-07-05 13:45:30.908701: Successfully ran: "cactus_analyseAssembly NA21309.1.sanitized.fa" in 1.0013 seconds and 51.9 Mi memory
2023-07-05 13:45:30.912427: Successfully ran: "cactus_analyseAssembly CHM13.sanitized.fa" in 1.7859 seconds and 460.2 Mi memory
2023-07-05 13:45:30.915738: Successfully ran: "cactus_analyseAssembly HG00733.1.sanitized.fa" in 1.6526 seconds and 68.9 Mi memory
2023-07-05 13:45:30.958030: Successfully ran: "cactus_analyseAssembly HG01243.1.sanitized.fa" in 1.6622 seconds and 75.8 Mi memory
2023-07-05 13:45:30.965735: Successfully ran: "cactus_analyseAssembly HG03453.1.sanitized.fa" in 1.6677 seconds and 61.9 Mi memory
2023-07-05 13:45:30.970015: Successfully ran: "cactus_analyseAssembly NA20129.1.sanitized.fa" in 1.6669 seconds and 51.9 Mi memory
2023-07-05 13:45:30.974402: Successfully ran: "cactus_analyseAssembly HG03486.1.sanitized.fa" in 1.7037 seconds and 51.9 Mi memory
2023-07-05 13:45:30.976417: Successfully ran: "cactus_analyseAssembly HG02559.2.sanitized.fa" in 1.7119 seconds and 153.9 Mi memory
2023-07-05 13:45:30.981678: Successfully ran: "cactus_analyseAssembly HG02148.1.sanitized.fa" in 1.6854 seconds and 153.9 Mi memory
2023-07-05 13:45:31.008193: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 1.67 seconds and 62.4 Mi memory
2023-07-05 13:45:31.011058: Successfully ran: "cactus_analyseAssembly HG02572.2.sanitized.fa" in 1.6833 seconds and 153.9 Mi memory
2023-07-05 13:45:31.013467: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 1.6799 seconds and 51.9 Mi memory
2023-07-05 13:45:31.016376: Successfully ran: "cactus_analyseAssembly HG02486.1.sanitized.fa" in 1.7063 seconds and 153.9 Mi memory
2023-07-05 13:45:31.018574: Successfully ran: "cactus_analyseAssembly HG00735.2.sanitized.fa" in 1.7149 seconds and 153.9 Mi memory
2023-07-05 13:45:31.025835: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 1.7128 seconds and 153.9 Mi memory
2023-07-05 13:45:31.043371: Successfully ran: "cactus_analyseAssembly HG02622.1.sanitized.fa" in 1.6665 seconds and 76.3 Mi memory
2023-07-05 13:45:31.122763: Successfully ran: "cactus_analyseAssembly HG01978.1.sanitized.fa" in 1.775 seconds and 153.9 Mi memory
2023-07-05 13:45:31.137653: Successfully ran: "cactus_analyseAssembly HG01928.2.sanitized.fa" in 1.7982 seconds and 153.9 Mi memory
2023-07-05 13:45:31.302565: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 1.8834 seconds and 460.2 Mi memory
2023-07-05 13:45:31.401604: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 0.7994 seconds and 24.8 Mi memory
2023-07-05 13:45:31.489479: Successfully ran: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa" in 1.3198 seconds and 4.5 Mi memory
2023-07-05 13:45:31.503973: Successfully ran: "cactus_analyseAssembly HG01978.2.sanitized.fa" in 1.3513 seconds and 69.1 Mi memory
2023-07-05 13:45:31.543341: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 1.3391 seconds and 69.1 Mi memory
2023-07-05 13:45:31.583411: Successfully ran: "cactus_analyseAssembly HG02717.1.sanitized.fa" in 1.345 seconds and 73.5 Mi memory
2023-07-05 13:45:31.619940: Successfully ran: "cactus_analyseAssembly HG03486.2.sanitized.fa" in 1.3422 seconds and 51.9 Mi memory
2023-07-05 13:45:31.648183: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 1.3978 seconds and 190.0 Mi memory
2023-07-05 13:45:31.688380: Successfully ran: "cactus_analyseAssembly NA18906.1.sanitized.fa" in 1.3736 seconds and 153.9 Mi memory
2023-07-05 13:45:31.714556: Successfully ran: "cactus_analyseAssembly HG02257.1.sanitized.fa" in 1.384 seconds and 153.9 Mi memory
2023-07-05 13:45:31.715751: Successfully ran: "cactus_analyseAssembly HG00741.2.sanitized.fa" in 1.3919 seconds and 153.9 Mi memory
2023-07-05 13:45:31.721572: Successfully ran: "cactus_analyseAssembly NA20129.1.sanitized.fa" in 1.3428 seconds and 51.9 Mi memory
2023-07-05 13:45:31.776262: Successfully ran: "cactus_analyseAssembly HG01978.1.sanitized.fa" in 1.4148 seconds and 153.9 Mi memory
2023-07-05 13:45:31.779488: Successfully ran: "cactus_analyseAssembly HG03540.2.sanitized.fa" in 1.3707 seconds and 51.9 Mi memory
2023-07-05 13:45:31.779621: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 1.7226 seconds and 51.8 Mi memory
2023-07-05 13:45:31.783614: Successfully ran: "cactus_analyseAssembly HG02080.1.sanitized.fa" in 1.7235 seconds and 54.7 Mi memory
2023-07-05 13:45:31.789561: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 1.413 seconds and 153.9 Mi memory
2023-07-05 13:45:31.791648: Successfully ran: "cactus_analyseAssembly HG02145.1.sanitized.fa" in 1.3703 seconds and 51.9 Mi memory
2023-07-05 13:45:31.792426: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 1.7377 seconds and 51.8 Mi memory
2023-07-05 13:45:31.809497: Successfully ran: "cactus_analyseAssembly HG02886.1.sanitized.fa" in 1.372 seconds and 51.9 Mi memory
2023-07-05 13:45:31.818324: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 1.369 seconds and 51.9 Mi memory
2023-07-05 13:45:31.821950: Successfully ran: "cactus_analyseAssembly HG02723.1.sanitized.fa" in 1.3657 seconds and 56.0 Mi memory
2023-07-05 13:45:31.823853: Successfully ran: "cactus_analyseAssembly HG02148.1.sanitized.fa" in 1.3753 seconds and 51.9 Mi memory
2023-07-05 13:45:31.826402: Successfully ran: "cactus_analyseAssembly HG02080.2.sanitized.fa" in 1.7819 seconds and 51.8 Mi memory
2023-07-05 13:45:31.827187: Successfully ran: "cactus_analyseAssembly HG02818.1.sanitized.fa" in 1.3564 seconds and 51.9 Mi memory
2023-07-05 13:45:31.855719: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 1.3944 seconds and 68.4 Mi memory
2023-07-05 13:45:31.873347: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 1.3794 seconds and 56.0 Mi memory
2023-07-05 13:45:31.876202: Successfully ran: "cactus_analyseAssembly HG02622.2.sanitized.fa" in 1.6944 seconds and 153.9 Mi memory
2023-07-05 13:45:31.885115: Successfully ran: "cactus_analyseAssembly HG03579.2.sanitized.fa" in 1.3836 seconds and 68.9 Mi memory
2023-07-05 13:45:31.888610: Successfully ran: "cactus_analyseAssembly HG01243.2.sanitized.fa" in 1.3843 seconds and 51.9 Mi memory
2023-07-05 13:45:31.893608: Successfully ran: "cactus_analyseAssembly HG01258.1.sanitized.fa" in 1.7467 seconds and 153.9 Mi memory
2023-07-05 13:45:31.894833: Successfully ran: "cactus_analyseAssembly HG01928.2.sanitized.fa" in 1.6673 seconds and 153.9 Mi memory
2023-07-05 13:45:31.896397: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 1.4078 seconds and 153.9 Mi memory
2023-07-05 13:45:31.909460: Successfully ran: "cactus_analyseAssembly HG01175.2.sanitized.fa" in 1.4064 seconds and 153.9 Mi memory
2023-07-05 13:45:31.916437: Successfully ran: "cactus_analyseAssembly HG00438.1.sanitized.fa" in 1.4168 seconds and 153.9 Mi memory
2023-07-05 13:45:31.924287: Successfully ran: "cactus_analyseAssembly HG01071.1.sanitized.fa" in 1.4277 seconds and 153.9 Mi memory
2023-07-05 13:45:31.943302: Successfully ran: "cactus_analyseAssembly HG03486.1.sanitized.fa" in 1.4187 seconds and 71.2 Mi memory
2023-07-05 13:45:31.946766: Successfully ran: "cactus_analyseAssembly HG03540.1.sanitized.fa" in 1.4306 seconds and 55.7 Mi memory
2023-07-05 13:45:31.960461: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 1.826 seconds and 56.2 Mi memory
2023-07-05 13:45:31.990931: Successfully ran: "cactus_analyseAssembly HG02717.2.sanitized.fa" in 1.8577 seconds and 153.9 Mi memory
2023-07-05 13:45:31.994637: Successfully ran: "cactus_analyseAssembly HG01071.1.sanitized.fa" in 1.8616 seconds and 153.9 Mi memory
2023-07-05 13:45:32.002712: Successfully ran: "cactus_analyseAssembly HG01928.1.sanitized.fa" in 1.8647 seconds and 153.9 Mi memory
2023-07-05 13:45:32.012747: Successfully ran: "cactus_analyseAssembly HG00741.1.sanitized.fa" in 1.5072 seconds and 153.9 Mi memory
2023-07-05 13:45:32.014520: Successfully ran: "cactus_analyseAssembly HG02622.2.sanitized.fa" in 1.4813 seconds and 153.9 Mi memory
2023-07-05 13:45:32.018313: Successfully ran: "cactus_analyseAssembly HG01978.2.sanitized.fa" in 1.8819 seconds and 153.9 Mi memory
2023-07-05 13:45:32.018643: Successfully ran: "cactus_analyseAssembly HG02559.2.sanitized.fa" in 1.5109 seconds and 153.9 Mi memory
2023-07-05 13:45:32.023694: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/6778/60ed/tmpdkvzkt88/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p'" in 1.9407 seconds and 51.9 Mi memory
2023-07-05 13:45:32.033261: Running the command: "cactus_analyseAssembly NA18906.1.sanitized.fa"
2023-07-05 13:45:32.038762: Successfully ran: "cactus_analyseAssembly HG01106.1.sanitized.fa" in 1.5075 seconds and 153.9 Mi memory
2023-07-05 13:45:32.066677: Successfully ran: "cactus_analyseAssembly HG00735.1.sanitized.fa" in 1.5236 seconds and 153.9 Mi memory
2023-07-05 13:45:32.078849: Successfully ran: "cactus_analyseAssembly HG00438.2.sanitized.fa" in 1.5184 seconds and 153.9 Mi memory
2023-07-05 13:45:32.086747: Successfully ran: "cactus_analyseAssembly HG01952.1.sanitized.fa" in 1.5286 seconds and 153.9 Mi memory
2023-07-05 13:45:32.088520: Successfully ran: "cactus_analyseAssembly HG02559.1.sanitized.fa" in 1.5388 seconds and 153.9 Mi memory
2023-07-05 13:45:32.101499: Successfully ran: "cactus_analyseAssembly HG02486.1.sanitized.fa" in 1.534 seconds and 153.9 Mi memory
2023-07-05 13:45:32.159304: Successfully ran: "cactus_analyseAssembly HG01952.2.sanitized.fa" in 1.5477 seconds and 153.9 Mi memory
2023-07-05 13:45:33.486988: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/834b/2840/tmpixwa5310/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p"
2023-07-05 13:45:33.531398: Successfully ran: "cactus_analyseAssembly NA18906.1.sanitized.fa" in 1.4973 seconds and 51.9 Mi memory
2023-07-05 13:45:34.426167: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/b308/e414/tmpfqlqsw7c/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p"
2023-07-05 13:45:34.436522: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/5127/3f96/tmpkb7jizaf/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p"
2023-07-05 13:45:34.476694: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/4b44/ff11/tmpinmn7zlg/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p"
2023-07-05 13:45:34.477648: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/8656/ee32/tmpc4frbdm9/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p"
2023-07-05 13:45:34.478060: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/dd82/7231/tmp75oh9dqf/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p"
2023-07-05 13:45:34.486929: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/40b3/5a8f/tmpms_bk6zx/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p"
2023-07-05 13:45:34.489209: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/ed4b/82cf/tmpi4acihh2/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
2023-07-05 13:45:34.489416: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/5959/209b/tmp5syvx4kx/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p"
2023-07-05 13:45:34.492292: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/aa97/fc2b/tmp5hxlxgcw/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-05 13:45:34.492359: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/928a/9d62/tmpzgjdx843/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p"
2023-07-05 13:45:34.494019: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/876b/639e/tmp4zvy05ct/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p"
2023-07-05 13:45:34.494852: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/d130/9dcc/tmpnx4owdck/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p"
2023-07-05 13:45:34.502038: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/5718/11d5/tmp_qf5b5rl/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p"
2023-07-05 13:45:34.502640: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/6ead/de0a/tmp2_x1a8_n/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-05 13:45:34.505541: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/f5f4/2be7/tmpsjpd1x7u/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-05 13:45:34.506023: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/4031/9c37/tmpx9vviplx/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p"
2023-07-05 13:45:34.506886: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/7772/2e47/tmp79uk6uu7/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p"
2023-07-05 13:45:34.511786: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/2d9b/c506/tmpso1bk1do/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p"
2023-07-05 13:45:34.511811: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/3a4f/f59d/tmpfc4wssk1/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p"
2023-07-05 13:45:34.519656: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/95a1/d847/tmpmmfp0sed/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p"
2023-07-05 13:45:34.520304: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/68a9/1974/tmpa6lx93zq/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p"
2023-07-05 13:45:34.520532: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/a0fa/b688/tmp2lnsbbum/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
2023-07-05 13:45:34.520835: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/331d/da2a/tmpjdlaz1r3/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p"
2023-07-05 13:45:34.521405: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/6c28/fee2/tmpvv0esvkt/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p"
2023-07-05 13:45:34.523230: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/83a9/2204/tmp6t127r1t/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p"
2023-07-05 13:45:34.526323: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/d83d/101c/tmp12k1x1ll/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p"
2023-07-05 13:45:34.530887: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/fdeb/b345/tmpjz66kxck/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p"
2023-07-05 13:45:34.531970: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/f313/da6d/tmpztg87rn6/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p"
2023-07-05 13:45:34.532284: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/7694/631e/tmp81kg7a6q/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p"
2023-07-05 13:45:34.533880: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/989d/aa54/tmp7yabvscm/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p"
2023-07-05 13:45:34.534053: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/b67f/bbcb/tmpxiq1oqun/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p"
2023-07-05 13:45:34.534074: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/d192/42bd/tmpy52aevr8/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p"
2023-07-05 13:45:34.535927: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/2206/d236/tmp13foafra/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p"
2023-07-05 13:45:34.536804: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/e09e/bf9d/tmpx0y6zgyt/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p"
2023-07-05 13:45:34.537745: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/c158/5ec6/tmp2tzmi1y8/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p"
2023-07-05 13:45:34.537875: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/c493/41cf/tmplvwlgzl3/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p"
2023-07-05 13:45:34.539048: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/ac8a/992c/tmp6nu0zekq/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p"
2023-07-05 13:45:34.539262: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/3f18/89cb/tmplo372d32/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p"
2023-07-05 13:45:34.539543: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/8ba9/6f6a/tmplbb_kqar/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-05 13:45:34.541820: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/2e3a/7a12/tmpk9vnsko_/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p"
2023-07-05 13:45:34.544649: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/b351/a44a/tmp1etjti29/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:45:34.545115: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/9533/ad43/tmpqfteqoz8/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p"
2023-07-05 13:45:34.545224: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/a6d3/106c/tmpdoaj_s8w/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p"
2023-07-05 13:45:34.549064: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/1ebc/08f4/tmpp3ti_ql6/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p"
2023-07-05 13:45:34.550477: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/858e/42fc/tmpxh0kqg3p/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p"
2023-07-05 13:45:34.550883: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/a4a5/48ca/tmph0g0n131/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p"
2023-07-05 13:45:34.551487: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/6d08/6fd7/tmpo0_ny0ow/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p"
2023-07-05 13:45:34.553635: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/1a31/dfda/tmps3hw9aek/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p"
2023-07-05 13:45:34.553664: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/cc62/b57b/tmp0blyhka1/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p"
2023-07-05 13:45:34.555170: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/2672/e358/tmpgncawktq/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p"
2023-07-05 13:45:34.555794: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/a4bc/58c8/tmpdjaeb1_2/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-05 13:45:34.556848: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/dfec/9b80/tmph2xp6ai9/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p"
2023-07-05 13:45:34.556928: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/0789/0f67/tmp784gwye5/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p"
2023-07-05 13:45:34.558259: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/4b1f/713b/tmp11johgw_/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p"
2023-07-05 13:45:34.561888: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/3e63/e0f2/tmp1zlqu0r3/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
2023-07-05 13:45:34.590329: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/3c09/1837/tmpmvylf1zi/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
2023-07-05 13:45:35.421812: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/834b/2840/tmpixwa5310/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p'" in 1.9335 seconds and 56.6 Mi memory
2023-07-05 13:45:35.430166: Running the command: "cactus_analyseAssembly HG03453.1.sanitized.fa"
2023-07-05 13:45:36.496162: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/989d/aa54/tmp7yabvscm/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p'" in 1.9608 seconds and 51.9 Mi memory
2023-07-05 13:45:36.505777: Running the command: "cactus_analyseAssembly NA20129.1.sanitized.fa"
2023-07-05 13:45:36.545687: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/d192/42bd/tmpy52aevr8/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p'" in 2.0101 seconds and 63.5 Mi memory
2023-07-05 13:45:36.547752: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/aa97/fc2b/tmp5hxlxgcw/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p'" in 2.0539 seconds and 71.2 Mi memory
2023-07-05 13:45:36.554455: Running the command: "cactus_analyseAssembly HG01109.2.sanitized.fa"
2023-07-05 13:45:36.556936: Running the command: "cactus_analyseAssembly HG03516.2.sanitized.fa"
2023-07-05 13:45:36.565977: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/3c09/1837/tmpmvylf1zi/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p'" in 1.9745 seconds and 5.1 Mi memory
2023-07-05 13:45:36.571383: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/b67f/bbcb/tmpxiq1oqun/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p'" in 2.0358 seconds and 51.9 Mi memory
2023-07-05 13:45:36.577262: Running the command: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa"
2023-07-05 13:45:36.579762: Running the command: "cactus_analyseAssembly HG03540.1.sanitized.fa"
2023-07-05 13:45:36.580687: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/858e/42fc/tmpxh0kqg3p/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p'" in 2.029 seconds and 66.3 Mi memory
2023-07-05 13:45:36.588670: Running the command: "cactus_analyseAssembly HG03516.1.sanitized.fa"
2023-07-05 13:45:36.593016: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/ed4b/82cf/tmpi4acihh2/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p'" in 2.1024 seconds and 74.0 Mi memory
2023-07-05 13:45:36.594468: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/40b3/5a8f/tmpms_bk6zx/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p'" in 2.1061 seconds and 154.0 Mi memory
2023-07-05 13:45:36.598183: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/5127/3f96/tmpkb7jizaf/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p'" in 2.1601 seconds and 154.0 Mi memory
2023-07-05 13:45:36.601245: Running the command: "cactus_analyseAssembly HG02717.1.sanitized.fa"
2023-07-05 13:45:36.602656: Running the command: "cactus_analyseAssembly HG02148.2.sanitized.fa"
2023-07-05 13:45:36.722100: Running the command: "cactus_analyseAssembly HG01358.1.sanitized.fa"
2023-07-05 13:45:36.725162: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/3a4f/f59d/tmpfc4wssk1/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p'" in 2.212 seconds and 51.9 Mi memory
2023-07-05 13:45:36.726741: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/d130/9dcc/tmpnx4owdck/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p'" in 2.2306 seconds and 154.0 Mi memory
2023-07-05 13:45:36.729948: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/dfec/9b80/tmph2xp6ai9/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p'" in 2.1719 seconds and 153.9 Mi memory
2023-07-05 13:45:36.813622: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/3e63/e0f2/tmp1zlqu0r3/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p'" in 2.2505 seconds and 154.0 Mi memory
2023-07-05 13:45:36.822223: Running the command: "cactus_analyseAssembly HG00621.2.sanitized.fa"
2023-07-05 13:45:36.944790: Successfully ran: "cactus_analyseAssembly HG03453.1.sanitized.fa" in 1.5138 seconds and 56.5 Mi memory
2023-07-05 13:45:37.051331: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/af1b/f91b/tmpdqg8bxsr/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p"
2023-07-05 13:45:37.156227: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/c493/41cf/tmplvwlgzl3/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 2.6171 seconds and 51.9 Mi memory
2023-07-05 13:45:37.164489: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
2023-07-05 13:45:37.278879: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e8dc209c74785086a801d9552f5dcf8f/4b44/ff11/tmpinmn7zlg/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p'" in 2.8008 seconds and 154.0 Mi memory
2023-07-05 13:45:37.287139: Running the command: "cactus_analyseAssembly HG00673.2.sanitized.fa"
2023-07-05 13:45:37.693342: Successfully ran: "cactus_analyseAssembly NA20129.1.sanitized.fa" in 1.1865 seconds and 51.9 Mi memory
2023-07-05 13:45:37.721839: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 1.1664 seconds and 63.4 Mi memory
2023-07-05 13:45:37.737521: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 1.1796 seconds and 71.2 Mi memory
2023-07-05 13:45:37.754205: Successfully ran: "cactus_analyseAssembly HG03540.1.sanitized.fa" in 1.1735 seconds and 51.9 Mi memory
2023-07-05 13:45:37.759096: Successfully ran: "cactus_analyseAssembly HG02717.1.sanitized.fa" in 1.1567 seconds and 74.0 Mi memory
2023-07-05 13:45:37.767310: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 1.1777 seconds and 66.3 Mi memory
2023-07-05 13:45:37.794559: Successfully ran: "cactus_analyseAssembly NA18906.1.sanitized.fa" in 1.1724 seconds and 57.5 Mi memory
2023-07-05 13:45:37.808252: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 1.2044 seconds and 153.9 Mi memory
2023-07-05 13:45:37.817578: Successfully ran: "cactus_analyseAssembly HG01978.1.sanitized.fa" in 1.1641 seconds and 51.9 Mi memory
2023-07-05 13:45:37.826134: Successfully ran: "cactus_analyseAssembly HG03453.1.sanitized.fa" in 1.1605 seconds and 51.9 Mi memory
2023-07-05 13:45:37.827517: Successfully ran: "cactus_analyseAssembly HG02145.1.sanitized.fa" in 1.1625 seconds and 51.9 Mi memory
2023-07-05 13:45:37.833918: Successfully ran: "cactus_analyseAssembly HG01952.2.sanitized.fa" in 1.2262 seconds and 153.9 Mi memory
2023-07-05 13:45:37.833927: Successfully ran: "cactus_analyseAssembly HG02486.2.sanitized.fa" in 1.2169 seconds and 153.9 Mi memory
2023-07-05 13:45:37.842458: Successfully ran: "cactus_analyseAssembly HG03098.1.sanitized.fa" in 1.1932 seconds and 153.9 Mi memory
2023-07-05 13:45:37.854036: Successfully ran: "cactus_analyseAssembly HG01071.2.sanitized.fa" in 1.2237 seconds and 153.9 Mi memory
2023-07-05 13:45:37.861054: Successfully ran: "cactus_analyseAssembly HG01358.2.sanitized.fa" in 1.2139 seconds and 153.9 Mi memory
2023-07-05 13:45:37.864588: Successfully ran: "cactus_analyseAssembly NA21309.1.sanitized.fa" in 1.2161 seconds and 51.9 Mi memory
2023-07-05 13:45:37.867569: Successfully ran: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa" in 1.2892 seconds and 4.8 Mi memory
2023-07-05 13:45:37.873554: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 1.2077 seconds and 153.9 Mi memory
2023-07-05 13:45:37.875409: Successfully ran: "cactus_analyseAssembly HG00741.2.sanitized.fa" in 1.2393 seconds and 153.9 Mi memory
2023-07-05 13:45:37.879112: Successfully ran: "cactus_analyseAssembly HG00733.1.sanitized.fa" in 1.2159 seconds and 153.9 Mi memory
2023-07-05 13:45:37.883021: Successfully ran: "cactus_analyseAssembly CHM13.sanitized.fa" in 1.2495 seconds and 174.5 Mi memory
2023-07-05 13:45:37.889465: Successfully ran: "cactus_analyseAssembly HG01928.1.sanitized.fa" in 1.2462 seconds and 153.9 Mi memory
2023-07-05 13:45:37.893739: Successfully ran: "cactus_analyseAssembly HG03098.2.sanitized.fa" in 1.2133 seconds and 153.9 Mi memory
2023-07-05 13:45:37.899365: Successfully ran: "cactus_analyseAssembly HG01123.1.sanitized.fa" in 1.2261 seconds and 153.9 Mi memory
2023-07-05 13:45:37.903560: Successfully ran: "cactus_analyseAssembly HG02148.1.sanitized.fa" in 1.2386 seconds and 68.9 Mi memory
2023-07-05 13:45:37.918239: Successfully ran: "cactus_analyseAssembly HG01243.2.sanitized.fa" in 1.2187 seconds and 153.9 Mi memory
2023-07-05 13:45:37.922616: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 1.2298 seconds and 51.9 Mi memory
2023-07-05 13:45:37.932956: Successfully ran: "cactus_analyseAssembly HG02886.2.sanitized.fa" in 1.247 seconds and 51.9 Mi memory
2023-07-05 13:45:37.961113: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 1.2424 seconds and 51.9 Mi memory
2023-07-05 13:45:37.963787: Successfully ran: "cactus_analyseAssembly HG01358.1.sanitized.fa" in 1.2408 seconds and 65.3 Mi memory
2023-07-05 13:45:37.971966: Successfully ran: "cactus_analyseAssembly NA21309.2.sanitized.fa" in 1.2367 seconds and 51.9 Mi memory
2023-07-05 13:45:37.980201: Successfully ran: "cactus_analyseAssembly HG01243.1.sanitized.fa" in 1.2681 seconds and 66.0 Mi memory
2023-07-05 13:45:37.985776: Successfully ran: "cactus_analyseAssembly HG00438.1.sanitized.fa" in 1.306 seconds and 153.9 Mi memory
2023-07-05 13:45:37.990526: Successfully ran: "cactus_analyseAssembly HG00741.1.sanitized.fa" in 1.2959 seconds and 153.9 Mi memory
2023-07-05 13:45:38.002490: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 1.2412 seconds and 59.3 Mi memory
2023-07-05 13:45:38.005999: Successfully ran: "cactus_analyseAssembly HG02886.1.sanitized.fa" in 1.2598 seconds and 51.9 Mi memory
2023-07-05 13:45:38.006502: Successfully ran: "cactus_analyseAssembly HG02109.1.sanitized.fa" in 1.317 seconds and 51.9 Mi memory
2023-07-05 13:45:38.010453: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 1.2651 seconds and 75.8 Mi memory
2023-07-05 13:45:38.011540: Successfully ran: "cactus_analyseAssembly HG01258.1.sanitized.fa" in 1.2542 seconds and 53.7 Mi memory
2023-07-05 13:45:38.015618: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 1.3041 seconds and 153.9 Mi memory
2023-07-05 13:45:38.023132: Successfully ran: "cactus_analyseAssembly HG02055.1.sanitized.fa" in 1.262 seconds and 57.8 Mi memory
2023-07-05 13:45:38.027145: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 1.2473 seconds and 51.9 Mi memory
2023-07-05 13:45:38.038093: Successfully ran: "cactus_analyseAssembly HG02630.1.sanitized.fa" in 1.2443 seconds and 51.9 Mi memory
2023-07-05 13:45:38.041246: Successfully ran: "cactus_analyseAssembly HG00735.1.sanitized.fa" in 1.2928 seconds and 153.9 Mi memory
2023-07-05 13:45:38.041261: Successfully ran: "cactus_analyseAssembly HG02818.1.sanitized.fa" in 1.2343 seconds and 51.9 Mi memory
2023-07-05 13:45:38.045021: Successfully ran: "cactus_analyseAssembly HG01891.1.sanitized.fa" in 1.3041 seconds and 153.9 Mi memory
2023-07-05 13:45:38.048264: Successfully ran: "cactus_analyseAssembly HG01928.2.sanitized.fa" in 1.311 seconds and 153.9 Mi memory
2023-07-05 13:45:38.057044: Successfully ran: "cactus_analyseAssembly HG01978.2.sanitized.fa" in 1.3171 seconds and 153.9 Mi memory
2023-07-05 13:45:38.063231: Successfully ran: "cactus_analyseAssembly HG02257.1.sanitized.fa" in 1.2934 seconds and 153.9 Mi memory
2023-07-05 13:45:38.089295: Successfully ran: "cactus_analyseAssembly HG02257.2.sanitized.fa" in 1.3151 seconds and 153.9 Mi memory
2023-07-05 13:45:38.107579: Successfully ran: "cactus_analyseAssembly HG01952.1.sanitized.fa" in 1.316 seconds and 153.9 Mi memory
2023-07-05 13:45:38.122225: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 1.2991 seconds and 153.9 Mi memory
2023-07-05 13:45:38.241185: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/af1b/f91b/tmpdqg8bxsr/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p'" in 1.1885 seconds and 55.3 Mi memory
2023-07-05 13:45:38.247338: Running the command: "cactus_analyseAssembly HG02559.2.sanitized.fa"
2023-07-05 13:45:38.374912: Successfully ran: "cactus_analyseAssembly HG02080.2.sanitized.fa" in 1.2096 seconds and 51.9 Mi memory
2023-07-05 13:45:38.520570: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 1.2325 seconds and 153.9 Mi memory
2023-07-05 13:45:38.604439: Successfully ran: "cactus_analyseAssembly HG02080.1.sanitized.fa" in 1.8839 seconds and 51.9 Mi memory
2023-07-05 13:45:39.266788: Successfully ran: "cactus_analyseAssembly HG02559.2.sanitized.fa" in 1.0184 seconds and 55.2 Mi memory
Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 3 Total-length: 142975314 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 141780111 Median-sequence-length: 1069391 Max-sequence-length: 141780111 Min-sequence-length: 125812

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 8 Total-length: 135400975 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31461388 Median-sequence-length: 14524913 Max-sequence-length: 45303737 Min-sequence-length: 366693

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 7 Total-length: 116789668 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36903177 Median-sequence-length: 5923789 Max-sequence-length: 41506503 Min-sequence-length: 550875

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 7 Total-length: 132454660 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20510461 Median-sequence-length: 15152463 Max-sequence-length: 60098909 Min-sequence-length: 1056871

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 8 Total-length: 137649056 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22877252 Median-sequence-length: 16932832 Max-sequence-length: 32794682 Min-sequence-length: 1801813

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 5 Total-length: 135909259 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 85825884 Median-sequence-length: 17003264 Max-sequence-length: 85825884 Min-sequence-length: 1111863

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 8 Total-length: 113903178 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39292014 Median-sequence-length: 3975080 Max-sequence-length: 40902283 Min-sequence-length: 34317

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 4 Total-length: 133415017 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 82099898 Median-sequence-length: 48657917 Max-sequence-length: 82099898 Min-sequence-length: 1013405

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 6 Total-length: 139384768 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43760098 Median-sequence-length: 39292189 Max-sequence-length: 49607890 Min-sequence-length: 1100286

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 10 Total-length: 137320296 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 45225382 Median-sequence-length: 1011769 Max-sequence-length: 49138847 Min-sequence-length: 17439

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 7 Total-length: 136744591 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 90181544 Median-sequence-length: 7184197 Max-sequence-length: 90181544 Min-sequence-length: 569453

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 3 Total-length: 141504964 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 140073632 Median-sequence-length: 1036110 Max-sequence-length: 140073632 Min-sequence-length: 395222

Got message from job at time 07-05-2023 13:45:44: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 150617247 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 150617247 Median-sequence-length: 150617247 Max-sequence-length: 150617247 Min-sequence-length: 150617247

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 8 Total-length: 138322458 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29854229 Median-sequence-length: 16380355 Max-sequence-length: 47885499 Min-sequence-length: 36403

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 5 Total-length: 154568647 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 81351327 Median-sequence-length: 3817544 Max-sequence-length: 81351327 Min-sequence-length: 29321

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 7 Total-length: 136779925 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34943736 Median-sequence-length: 17444352 Max-sequence-length: 47004684 Min-sequence-length: 1007813

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 10 Total-length: 139275418 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16363884 Median-sequence-length: 9248852 Max-sequence-length: 66343610 Min-sequence-length: 219515

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG03453.1: Input-sample: HG03453.1.sanitized.fa Total-sequences: 7 Total-length: 126784722 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33707625 Median-sequence-length: 16371455 Max-sequence-length: 36529750 Min-sequence-length: 572842

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 5 Total-length: 137806649 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 112619390 Median-sequence-length: 3819507 Max-sequence-length: 112619390 Min-sequence-length: 1017221

Got message from job at time 07-05-2023 13:45:44: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 138394717 Proportion-repeat-masked: 0.119977 ProportionNs: 0.119977 Total-Ns: 16604164 N50: 138394717 Median-sequence-length: 138394717 Max-sequence-length: 138394717 Min-sequence-length: 138394717

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 6 Total-length: 143063501 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 86284145 Median-sequence-length: 3822138 Max-sequence-length: 86284145 Min-sequence-length: 151394

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 12 Total-length: 126021269 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24163376 Median-sequence-length: 7186310 Max-sequence-length: 32093369 Min-sequence-length: 114380

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 4 Total-length: 135825781 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 38125229 Median-sequence-length: 38125229 Max-sequence-length: 64610041 Min-sequence-length: 4911934

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 9 Total-length: 136327656 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40993023 Median-sequence-length: 7183688 Max-sequence-length: 50594854 Min-sequence-length: 22421

Got message from job at time 07-05-2023 13:45:44: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 12536 Total-length: 140420747 Proportion-repeat-masked: 0.118246 ProportionNs: 0.118246 Total-Ns: 16604164 N50: 92716 Median-sequence-length: 116 Max-sequence-length: 18426601 Min-sequence-length: 1

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 5 Total-length: 135605963 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32735917 Median-sequence-length: 28192900 Max-sequence-length: 57616410 Min-sequence-length: 1009046

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 7 Total-length: 136554911 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29835124 Median-sequence-length: 18787708 Max-sequence-length: 46865238 Min-sequence-length: 185498

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 4 Total-length: 139146460 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 137440300 Median-sequence-length: 1040148 Max-sequence-length: 137440300 Min-sequence-length: 141130

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 5 Total-length: 117337943 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 68020289 Median-sequence-length: 4743386 Max-sequence-length: 68020289 Min-sequence-length: 105558

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 9 Total-length: 120690322 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 66142561 Median-sequence-length: 2181588 Max-sequence-length: 66142561 Min-sequence-length: 369422

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 9 Total-length: 137874412 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36029915 Median-sequence-length: 7184042 Max-sequence-length: 52713359 Min-sequence-length: 151535

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 6 Total-length: 144266682 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 49444119 Median-sequence-length: 20513843 Max-sequence-length: 69381636 Min-sequence-length: 81612

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG01071.1: Input-sample: HG01071.1.sanitized.fa Total-sequences: 7 Total-length: 138012487 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 93374415 Median-sequence-length: 1263511 Max-sequence-length: 93374415 Min-sequence-length: 362458

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 8 Total-length: 137471357 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39305623 Median-sequence-length: 13051962 Max-sequence-length: 48928895 Min-sequence-length: 2018024

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 6 Total-length: 137555474 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 89443525 Median-sequence-length: 2006219 Max-sequence-length: 89443525 Min-sequence-length: 26654

Got message from job at time 07-05-2023 13:45:44: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 8 Total-length: 135672203 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40994157 Median-sequence-length: 17331446 Max-sequence-length: 44879521 Min-sequence-length: 13227

Got message from job at time 07-05-2023 13:45:45: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 7 Total-length: 134700393 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43699270 Median-sequence-length: 5017693 Max-sequence-length: 44145817 Min-sequence-length: 513768

Got message from job at time 07-05-2023 13:45:45: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 8 Total-length: 113743521 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 62235533 Median-sequence-length: 3816034 Max-sequence-length: 62235533 Min-sequence-length: 504046

Got message from job at time 07-05-2023 13:45:45: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 24 Total-length: 131482353 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39154999 Median-sequence-length: 529230 Max-sequence-length: 46669287 Min-sequence-length: 41898

Got message from job at time 07-05-2023 13:45:45: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 6 Total-length: 140960831 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33265989 Median-sequence-length: 27653451 Max-sequence-length: 44224222 Min-sequence-length: 510353

Got message from job at time 07-05-2023 13:45:45: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 6 Total-length: 132566703 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32140173 Median-sequence-length: 26397689 Max-sequence-length: 60142808 Min-sequence-length: 1800578

Got message from job at time 07-05-2023 13:45:45: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 8 Total-length: 138468104 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29375576 Median-sequence-length: 15725459 Max-sequence-length: 48477415 Min-sequence-length: 732102

Got message from job at time 07-05-2023 13:45:45: Assembly stats for HG02622.1: Input-sample: HG02622.1.sanitized.fa Total-sequences: 5 Total-length: 138687183 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 45324442 Median-sequence-length: 43116325 Max-sequence-length: 49212927 Min-sequence-length: 368854

Got message from job at time 07-05-2023 13:45:45: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 7 Total-length: 124263974 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17594392 Median-sequence-length: 15210529 Max-sequence-length: 38236172 Min-sequence-length: 4858619

Got message from job at time 07-05-2023 13:45:45: Assembly stats for HG03540.1: Input-sample: HG03540.1.sanitized.fa Total-sequences: 10 Total-length: 126396591 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39334385 Median-sequence-length: 3124447 Max-sequence-length: 40126039 Min-sequence-length: 38484

Got message from job at time 07-05-2023 13:45:45: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 3 Total-length: 138300237 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 122143517 Median-sequence-length: 15125467 Max-sequence-length: 122143517 Min-sequence-length: 1031253

Got message from job at time 07-05-2023 13:45:45: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 7 Total-length: 115432945 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32579394 Median-sequence-length: 6882533 Max-sequence-length: 44974916 Min-sequence-length: 360509

Got message from job at time 07-05-2023 13:45:45: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 6 Total-length: 128219335 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 78813566 Median-sequence-length: 3822841 Max-sequence-length: 78813566 Min-sequence-length: 31200

Got message from job at time 07-05-2023 13:45:45: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 10 Total-length: 133558614 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35894297 Median-sequence-length: 5970595 Max-sequence-length: 51967569 Min-sequence-length: 65005

Got message from job at time 07-05-2023 13:45:45: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 27 Total-length: 134647311 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23860334 Median-sequence-length: 852410 Max-sequence-length: 48684228 Min-sequence-length: 18992

Got message from job at time 07-05-2023 13:45:45: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 7 Total-length: 128517841 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37413619 Median-sequence-length: 15139895 Max-sequence-length: 39289522 Min-sequence-length: 49395

Got message from job at time 07-05-2023 13:45:45: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 3 Total-length: 119934450 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 75228311 Median-sequence-length: 43614933 Max-sequence-length: 75228311 Min-sequence-length: 1091206

Got message from job at time 07-05-2023 13:45:45: Assembly stats for NA20129.1: Input-sample: NA20129.1.sanitized.fa Total-sequences: 9 Total-length: 136111109 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29888945 Median-sequence-length: 15789250 Max-sequence-length: 46175998 Min-sequence-length: 33943

Got message from job at time 07-05-2023 13:45:45: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 8 Total-length: 149936037 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 75957767 Median-sequence-length: 9197023 Max-sequence-length: 75957767 Min-sequence-length: 1797769

Got message from job at time 07-05-2023 13:45:45: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 7 Total-length: 144327464 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43138809 Median-sequence-length: 10967399 Max-sequence-length: 59132331 Min-sequence-length: 114024

Got message from job at time 07-05-2023 13:45:45: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 6 Total-length: 137126588 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 92943921 Median-sequence-length: 17532244 Max-sequence-length: 92943921 Min-sequence-length: 137866

Got message from job at time 07-05-2023 13:45:45: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 7 Total-length: 120716277 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39561137 Median-sequence-length: 1992484 Max-sequence-length: 43108722 Min-sequence-length: 70534

Got message from job at time 07-05-2023 13:45:45: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 15 Total-length: 133054151 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22188293 Median-sequence-length: 5620982 Max-sequence-length: 36963422 Min-sequence-length: 19624

Got message from job at time 07-05-2023 13:45:45: Assembly stats for HG00735.1: Input-sample: HG00735.1.sanitized.fa Total-sequences: 7 Total-length: 135933989 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26406021 Median-sequence-length: 15377846 Max-sequence-length: 66883613 Min-sequence-length: 24427

Got message from job at time 07-05-2023 13:45:45: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 9 Total-length: 127481472 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34683286 Median-sequence-length: 3712567 Max-sequence-length: 48751887 Min-sequence-length: 149482

Got message from job at time 07-05-2023 13:45:45: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 10 Total-length: 130492043 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29832087 Median-sequence-length: 8096238 Max-sequence-length: 42652391 Min-sequence-length: 65994

Got message from job at time 07-05-2023 13:45:46: Assembly stats for NA18906.1: Input-sample: NA18906.1.sanitized.fa Total-sequences: 5 Total-length: 134082883 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41835215 Median-sequence-length: 24734730 Max-sequence-length: 45955846 Min-sequence-length: 1096252

Got message from job at time 07-05-2023 13:45:46: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 8 Total-length: 141808809 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 82000166 Median-sequence-length: 15124072 Max-sequence-length: 82000166 Min-sequence-length: 572940

Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-cuueg04k v1 with job batch system ID: 2661 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 13:45:51.220805: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/f798/6d3b/tmpazh_v8ud/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p"
2023-07-05 13:45:53.210602: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/f798/6d3b/tmpazh_v8ud/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p'" in 1.9885 seconds and 154.0 Mi memory
2023-07-05 13:45:53.218041: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
Got message from job at time 07-05-2023 13:45:54: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 11 Total-length: 79155747 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 34 N50: 12142232 Median-sequence-length: 5883368 Max-sequence-length: 17936443 Min-sequence-length: 2310491

2023-07-05 13:45:54.797377: Successfully ran: "cactus_analyseAssembly HG03098.2.sanitized.fa" in 1.5784 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:45:55: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 6 Total-length: 77361092 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16150166 Median-sequence-length: 12334792 Max-sequence-length: 31556053 Min-sequence-length: 1776772

Got message from job at time 07-05-2023 13:45:59: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 3 Total-length: 79206780 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 55326480 Median-sequence-length: 17679155 Max-sequence-length: 55326480 Min-sequence-length: 6201145

Got message from job at time 07-05-2023 13:45:59: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 6 Total-length: 79129551 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40402797 Median-sequence-length: 6106507 Max-sequence-length: 40402797 Min-sequence-length: 2819512

Got message from job at time 07-05-2023 13:45:59: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 7 Total-length: 80234212 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18824876 Median-sequence-length: 11931584 Max-sequence-length: 27992050 Min-sequence-length: 80273

Got message from job at time 07-05-2023 13:45:59: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 8 Total-length: 88792163 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 45210812 Median-sequence-length: 4626115 Max-sequence-length: 45210812 Min-sequence-length: 41771

2023-07-05 13:46:00.780079: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/88e4/960c/tmpsc8pcb9i/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p"
2023-07-05 13:46:01.858912: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/88e4/960c/tmpsc8pcb9i/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p'" in 1.0775 seconds and 51.9 Mi memory
2023-07-05 13:46:01.862595: Running the command: "cactus_analyseAssembly HG01928.1.sanitized.fa"
Got message from job at time 07-05-2023 13:46:01: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 3 Total-length: 79239354 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 55352444 Median-sequence-length: 17461661 Max-sequence-length: 55352444 Min-sequence-length: 6425249

2023-07-05 13:46:02.734096: Successfully ran: "cactus_analyseAssembly HG01928.1.sanitized.fa" in 0.8706 seconds and 51.9 Mi memory
2023-07-05 13:46:04.490267: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/9353/76e3/tmp9a24npn7/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
Got message from job at time 07-05-2023 13:46:04: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 17 Total-length: 60659192 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 10123186 Median-sequence-length: 1166279 Max-sequence-length: 11669253 Min-sequence-length: 22595

2023-07-05 13:46:04.520716: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b3f0/7e08/tmpa29bbcmb/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
2023-07-05 13:46:04.526525: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/2c2a/c54a/tmpggw_ztvc/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p"
2023-07-05 13:46:04.532668: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/6964/326f/tmp_htfftbz/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p"
2023-07-05 13:46:04.535167: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/f82e/e54c/tmpl7ebqsu9/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p"
2023-07-05 13:46:04.541466: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/9b66/8499/tmpbce41sq3/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p"
2023-07-05 13:46:04.545036: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/2c4e/0b3f/tmplihg5wrt/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p"
2023-07-05 13:46:04.553971: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/7606/0c71/tmpa07rxszs/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p"
2023-07-05 13:46:04.556782: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/29b5/7bec/tmp1efexvon/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p"
2023-07-05 13:46:04.559894: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/164a/b76a/tmp4u6ihncx/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-05 13:46:04.565151: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/f4a5/5425/tmpaxy4iwcx/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
2023-07-05 13:46:04.570964: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/50ae/cd0a/tmp4ondkzb_/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p"
Got message from job at time 07-05-2023 13:46:04: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 10 Total-length: 88925925 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16439406 Median-sequence-length: 4702872 Max-sequence-length: 33875898 Min-sequence-length: 24129

Got message from job at time 07-05-2023 13:46:04: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 12 Total-length: 62011094 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 8975325 Median-sequence-length: 3385311 Max-sequence-length: 18361805 Min-sequence-length: 44472

Got message from job at time 07-05-2023 13:46:04: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 14 Total-length: 82826899 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14989171 Median-sequence-length: 1485025 Max-sequence-length: 34590652 Min-sequence-length: 39480

Got message from job at time 07-05-2023 13:46:04: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 13 Total-length: 88226863 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 48579413 Median-sequence-length: 73500 Max-sequence-length: 48579413 Min-sequence-length: 21833

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 14 Total-length: 82804857 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15192195 Median-sequence-length: 3110168 Max-sequence-length: 28974070 Min-sequence-length: 23145

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 16 Total-length: 89909635 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15438184 Median-sequence-length: 1024601 Max-sequence-length: 34460510 Min-sequence-length: 48939

Got message from job at time 07-05-2023 13:46:05: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 13 Total-length: 93409737 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25136357 Median-sequence-length: 3319432 Max-sequence-length: 27880004 Min-sequence-length: 18511

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG02622.1: Input-sample: HG02622.1.sanitized.fa Total-sequences: 6 Total-length: 79305129 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18408929 Median-sequence-length: 15373491 Max-sequence-length: 34501142 Min-sequence-length: 27779

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 11 Total-length: 62218125 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37789304 Median-sequence-length: 1224890 Max-sequence-length: 37789304 Min-sequence-length: 37401

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 5 Total-length: 87917461 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 45175589 Median-sequence-length: 15636427 Max-sequence-length: 45175589 Min-sequence-length: 71811

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG03540.1: Input-sample: HG03540.1.sanitized.fa Total-sequences: 10 Total-length: 92685829 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23264578 Median-sequence-length: 4488760 Max-sequence-length: 41831054 Min-sequence-length: 27113

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 11 Total-length: 61306834 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15342586 Median-sequence-length: 2619281 Max-sequence-length: 27963158 Min-sequence-length: 263173

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 8 Total-length: 89671317 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 19 N50: 25005480 Median-sequence-length: 10361697 Max-sequence-length: 28662902 Min-sequence-length: 176848

Got message from job at time 07-05-2023 13:46:05: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 9 Total-length: 61480664 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15932986 Median-sequence-length: 2895824 Max-sequence-length: 24238511 Min-sequence-length: 304499

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 12 Total-length: 60929472 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 9575725 Median-sequence-length: 2929392 Max-sequence-length: 16843003 Min-sequence-length: 280845

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 10 Total-length: 93188091 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 56371641 Median-sequence-length: 2692309 Max-sequence-length: 56371641 Min-sequence-length: 92307

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 11 Total-length: 61104335 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18345394 Median-sequence-length: 1515358 Max-sequence-length: 18391962 Min-sequence-length: 23594

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 7 Total-length: 90379045 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24139572 Median-sequence-length: 12682915 Max-sequence-length: 34035175 Min-sequence-length: 611414

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 8 Total-length: 63080659 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 45363450 Median-sequence-length: 2900748 Max-sequence-length: 45363450 Min-sequence-length: 29818

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 9 Total-length: 61678806 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 13952330 Median-sequence-length: 2908460 Max-sequence-length: 22924085 Min-sequence-length: 694375

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 15 Total-length: 90202573 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 11069974 Median-sequence-length: 2965042 Max-sequence-length: 24867463 Min-sequence-length: 71560

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG03453.1: Input-sample: HG03453.1.sanitized.fa Total-sequences: 6 Total-length: 80123494 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44361806 Median-sequence-length: 10373749 Max-sequence-length: 44361806 Min-sequence-length: 178567

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 5 Total-length: 87153064 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30164985 Median-sequence-length: 10365058 Max-sequence-length: 34126708 Min-sequence-length: 4430104

Got message from job at time 07-05-2023 13:46:05: Assembly stats for NA20129.1: Input-sample: NA20129.1.sanitized.fa Total-sequences: 17 Total-length: 86122018 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24975770 Median-sequence-length: 148115 Max-sequence-length: 27230964 Min-sequence-length: 18600

Got message from job at time 07-05-2023 13:46:05: Assembly stats for NA18906.1: Input-sample: NA18906.1.sanitized.fa Total-sequences: 8 Total-length: 85023908 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20870597 Median-sequence-length: 15866750 Max-sequence-length: 25119767 Min-sequence-length: 128961

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 10 Total-length: 91849101 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 56012769 Median-sequence-length: 2171925 Max-sequence-length: 56012769 Min-sequence-length: 177873

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 11 Total-length: 92026005 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24061170 Median-sequence-length: 5953304 Max-sequence-length: 29513324 Min-sequence-length: 33377

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 8 Total-length: 60482430 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32072387 Median-sequence-length: 4673809 Max-sequence-length: 32072387 Min-sequence-length: 31801

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 9 Total-length: 63153680 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 13347189 Median-sequence-length: 6205784 Max-sequence-length: 15722113 Min-sequence-length: 823103

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 9 Total-length: 87239796 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24794340 Median-sequence-length: 478281 Max-sequence-length: 31493019 Min-sequence-length: 29386

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 6 Total-length: 61506976 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 50294217 Median-sequence-length: 2629218 Max-sequence-length: 50294217 Min-sequence-length: 281812

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 9 Total-length: 87303137 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19339523 Median-sequence-length: 7725371 Max-sequence-length: 25260022 Min-sequence-length: 176548

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 8 Total-length: 62048140 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12796072 Median-sequence-length: 6497195 Max-sequence-length: 24228400 Min-sequence-length: 21593

Got message from job at time 07-05-2023 13:46:05: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 58617616 Proportion-repeat-masked: 0.048641 ProportionNs: 0.048641 Total-Ns: 2851219 N50: 58617616 Median-sequence-length: 58617616 Max-sequence-length: 58617616 Min-sequence-length: 58617616

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 7 Total-length: 86813318 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22637068 Median-sequence-length: 10346663 Max-sequence-length: 25381477 Min-sequence-length: 177560

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 11 Total-length: 81527648 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17899608 Median-sequence-length: 3146181 Max-sequence-length: 25655573 Min-sequence-length: 21200

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG00741.1: Input-sample: HG00741.1.sanitized.fa Total-sequences: 12 Total-length: 61660050 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16552028 Median-sequence-length: 1590967 Max-sequence-length: 19943996 Min-sequence-length: 22241

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 8 Total-length: 63404304 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 53784880 Median-sequence-length: 811597 Max-sequence-length: 53784880 Min-sequence-length: 32106

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 8 Total-length: 89131935 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 48555577 Median-sequence-length: 4434734 Max-sequence-length: 48555577 Min-sequence-length: 68267

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 8 Total-length: 89427165 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30443222 Median-sequence-length: 3284743 Max-sequence-length: 34505155 Min-sequence-length: 17063

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 7 Total-length: 61638957 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31144102 Median-sequence-length: 2411222 Max-sequence-length: 31144102 Min-sequence-length: 488379

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 4 Total-length: 87859517 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51614096 Median-sequence-length: 25708438 Max-sequence-length: 51614096 Min-sequence-length: 2301806

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 5 Total-length: 86853807 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 46752400 Median-sequence-length: 10376051 Max-sequence-length: 46752400 Min-sequence-length: 616902

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 9 Total-length: 88067594 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 49554394 Median-sequence-length: 178485 Max-sequence-length: 49554394 Min-sequence-length: 21182

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 10 Total-length: 60979520 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 46878840 Median-sequence-length: 1337531 Max-sequence-length: 46878840 Min-sequence-length: 59009

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 10 Total-length: 58141210 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 10408798 Median-sequence-length: 4272162 Max-sequence-length: 24980393 Min-sequence-length: 187852

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 11 Total-length: 88597518 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 47790068 Median-sequence-length: 1970103 Max-sequence-length: 47790068 Min-sequence-length: 45111

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 6 Total-length: 59803132 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40869092 Median-sequence-length: 2901594 Max-sequence-length: 40869092 Min-sequence-length: 936574

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 4 Total-length: 61336445 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39641791 Median-sequence-length: 17479293 Max-sequence-length: 39641791 Min-sequence-length: 1305774

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 13 Total-length: 89866565 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18479422 Median-sequence-length: 1963193 Max-sequence-length: 30147689 Min-sequence-length: 19923

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 9 Total-length: 60460632 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23724796 Median-sequence-length: 2269471 Max-sequence-length: 25267487 Min-sequence-length: 284470

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 7 Total-length: 86812566 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44773628 Median-sequence-length: 6507735 Max-sequence-length: 44773628 Min-sequence-length: 78866

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 7 Total-length: 62259630 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44850240 Median-sequence-length: 2908062 Max-sequence-length: 44850240 Min-sequence-length: 100661

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 8 Total-length: 60915447 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54362305 Median-sequence-length: 1291786 Max-sequence-length: 54362305 Min-sequence-length: 39454

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG03540.1: Input-sample: HG03540.1.sanitized.fa Total-sequences: 7 Total-length: 61778745 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33108868 Median-sequence-length: 7078994 Max-sequence-length: 33108868 Min-sequence-length: 28778

Got message from job at time 07-05-2023 13:46:05: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 7 Total-length: 91884904 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 49983098 Median-sequence-length: 10365987 Max-sequence-length: 49983098 Min-sequence-length: 53958

Got message from job at time 07-05-2023 13:46:06: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 8 Total-length: 95003171 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 58956872 Median-sequence-length: 850394 Max-sequence-length: 58956872 Min-sequence-length: 22288

Got message from job at time 07-05-2023 13:46:06: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 11 Total-length: 88216696 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24320580 Median-sequence-length: 4203566 Max-sequence-length: 24970119 Min-sequence-length: 27883

Got message from job at time 07-05-2023 13:46:06: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 10 Total-length: 62490869 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37468068 Median-sequence-length: 1339608 Max-sequence-length: 37468068 Min-sequence-length: 36886

Got message from job at time 07-05-2023 13:46:06: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 28 Total-length: 94809622 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14328990 Median-sequence-length: 1263530 Max-sequence-length: 17524225 Min-sequence-length: 77671

Got message from job at time 07-05-2023 13:46:06: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 10 Total-length: 61270522 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32344643 Median-sequence-length: 4362961 Max-sequence-length: 32344643 Min-sequence-length: 556365

Got message from job at time 07-05-2023 13:46:06: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 8 Total-length: 61707940 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31582450 Median-sequence-length: 2921224 Max-sequence-length: 31582450 Min-sequence-length: 280845

Got message from job at time 07-05-2023 13:46:06: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 12 Total-length: 83020960 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15553054 Median-sequence-length: 4471740 Max-sequence-length: 20564675 Min-sequence-length: 39458

Got message from job at time 07-05-2023 13:46:06: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 6 Total-length: 61356931 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18251860 Median-sequence-length: 7273927 Max-sequence-length: 24545121 Min-sequence-length: 1322012

2023-07-05 13:46:06.651174: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/f4a5/5425/tmpaxy4iwcx/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p'" in 2.0847 seconds and 69.4 Mi memory
2023-07-05 13:46:06.656178: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/7606/0c71/tmpa07rxszs/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p'" in 2.1008 seconds and 51.9 Mi memory
2023-07-05 13:46:06.661689: Running the command: "cactus_analyseAssembly HG02717.1.sanitized.fa"
2023-07-05 13:46:06.665517: Running the command: "cactus_analyseAssembly HG02080.1.sanitized.fa"
2023-07-05 13:46:06.679825: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/9353/76e3/tmp9a24npn7/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p'" in 2.188 seconds and 68.7 Mi memory
2023-07-05 13:46:06.688958: Running the command: "cactus_analyseAssembly HG01106.2.sanitized.fa"
2023-07-05 13:46:06.689544: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/9b66/8499/tmpbce41sq3/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p'" in 2.1466 seconds and 70.5 Mi memory
2023-07-05 13:46:06.696880: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/b3f0/7e08/tmpa29bbcmb/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p'" in 2.1747 seconds and 154.0 Mi memory
2023-07-05 13:46:06.699056: Running the command: "cactus_analyseAssembly HG02723.2.sanitized.fa"
2023-07-05 13:46:06.700203: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/2c2a/c54a/tmpggw_ztvc/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p'" in 2.1723 seconds and 72.0 Mi memory
2023-07-05 13:46:06.705177: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/2c4e/0b3f/tmplihg5wrt/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p'" in 2.1584 seconds and 154.0 Mi memory
2023-07-05 13:46:06.707313: Running the command: "cactus_analyseAssembly HG00438.2.sanitized.fa"
2023-07-05 13:46:06.710386: Running the command: "cactus_analyseAssembly HG00741.1.sanitized.fa"
2023-07-05 13:46:06.714511: Running the command: "cactus_analyseAssembly HG00735.1.sanitized.fa"
2023-07-05 13:46:06.714635: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/f82e/e54c/tmpl7ebqsu9/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p'" in 2.1783 seconds and 154.0 Mi memory
2023-07-05 13:46:06.724459: Running the command: "cactus_analyseAssembly HG02148.2.sanitized.fa"
2023-07-05 13:46:06.728386: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/6964/326f/tmp_htfftbz/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p'" in 2.1943 seconds and 62.0 Mi memory
2023-07-05 13:46:06.737193: Running the command: "cactus_analyseAssembly HG00673.1.sanitized.fa"
2023-07-05 13:46:06.744989: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/29b5/7bec/tmp1efexvon/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p'" in 2.187 seconds and 153.9 Mi memory
2023-07-05 13:46:06.754589: Running the command: "cactus_analyseAssembly HG00741.2.sanitized.fa"
2023-07-05 13:46:06.757498: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/50ae/cd0a/tmp4ondkzb_/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p'" in 2.1852 seconds and 65.8 Mi memory
2023-07-05 13:46:06.766684: Running the command: "cactus_analyseAssembly NA18906.1.sanitized.fa"
2023-07-05 13:46:07.485869: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/e41d97042ffa55f1a1fc324d5464836c/164a/b76a/tmp4u6ihncx/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p'" in 2.9247 seconds and 154.0 Mi memory
2023-07-05 13:46:07.494426: Running the command: "cactus_analyseAssembly HG03516.2.sanitized.fa"
2023-07-05 13:46:08.170409: Successfully ran: "cactus_analyseAssembly HG02080.1.sanitized.fa" in 1.5038 seconds and 51.9 Mi memory
2023-07-05 13:46:08.194238: Successfully ran: "cactus_analyseAssembly HG02717.1.sanitized.fa" in 1.5314 seconds and 69.4 Mi memory
2023-07-05 13:46:08.211785: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 1.5219 seconds and 68.6 Mi memory
2023-07-05 13:46:08.223647: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 1.5236 seconds and 70.4 Mi memory
2023-07-05 13:46:08.229024: Successfully ran: "cactus_analyseAssembly HG00741.1.sanitized.fa" in 1.5176 seconds and 72.0 Mi memory
2023-07-05 13:46:08.269066: Successfully ran: "cactus_analyseAssembly HG00438.2.sanitized.fa" in 1.5607 seconds and 153.9 Mi memory
2023-07-05 13:46:08.271535: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 1.5332 seconds and 61.9 Mi memory
2023-07-05 13:46:08.288632: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 1.5633 seconds and 153.9 Mi memory
2023-07-05 13:46:08.296697: Successfully ran: "cactus_analyseAssembly HG00735.1.sanitized.fa" in 1.5812 seconds and 153.9 Mi memory
2023-07-05 13:46:08.317371: Successfully ran: "cactus_analyseAssembly NA18906.1.sanitized.fa" in 1.5498 seconds and 65.8 Mi memory
2023-07-05 13:46:08.330907: Successfully ran: "cactus_analyseAssembly HG00741.2.sanitized.fa" in 1.5752 seconds and 153.9 Mi memory
Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-y3en6bzs v1 with job batch system ID: 2662 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:46:08: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 10 Total-length: 88434068 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15680121 Median-sequence-length: 4088134 Max-sequence-length: 40710680 Min-sequence-length: 18248

Got message from job at time 07-05-2023 13:46:08: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 8 Total-length: 99191618 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24827663 Median-sequence-length: 10766253 Max-sequence-length: 32599469 Min-sequence-length: 20826

Got message from job at time 07-05-2023 13:46:08: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 12 Total-length: 91650937 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20769552 Median-sequence-length: 1995669 Max-sequence-length: 33242668 Min-sequence-length: 108904

Got message from job at time 07-05-2023 13:46:08: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 10 Total-length: 61233540 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14523087 Median-sequence-length: 5477957 Max-sequence-length: 21563736 Min-sequence-length: 182239

Got message from job at time 07-05-2023 13:46:08: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 90338345 Proportion-repeat-masked: 0.094449 ProportionNs: 0.094449 Total-Ns: 8532401 N50: 90338345 Median-sequence-length: 90338345 Max-sequence-length: 90338345 Min-sequence-length: 90338345

Got message from job at time 07-05-2023 13:46:08: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 10 Total-length: 130098127 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17899814 Median-sequence-length: 14259071 Max-sequence-length: 26614975 Min-sequence-length: 27704

Got message from job at time 07-05-2023 13:46:08: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 3 Total-length: 134045087 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 72065649 Median-sequence-length: 61885592 Max-sequence-length: 72065649 Min-sequence-length: 93846

Got message from job at time 07-05-2023 13:46:08: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 7 Total-length: 62338370 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52629038 Median-sequence-length: 1807594 Max-sequence-length: 52629038 Min-sequence-length: 412152

Got message from job at time 07-05-2023 13:46:08: Assembly stats for HG00735.1: Input-sample: HG00735.1.sanitized.fa Total-sequences: 12 Total-length: 60328561 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18691786 Median-sequence-length: 1383566 Max-sequence-length: 22310561 Min-sequence-length: 23052

Got message from job at time 07-05-2023 13:46:08: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 7 Total-length: 87320627 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17189203 Median-sequence-length: 12547933 Max-sequence-length: 25031540 Min-sequence-length: 196242

Got message from job at time 07-05-2023 13:46:08: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 4 Total-length: 137974252 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 63337126 Median-sequence-length: 63337126 Max-sequence-length: 68405930 Min-sequence-length: 1256536

Got message from job at time 07-05-2023 13:46:08: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 13683 Total-length: 64774638 Proportion-repeat-masked: 0.044018 ProportionNs: 0.044018 Total-Ns: 2851219 N50: 45654 Median-sequence-length: 105 Max-sequence-length: 2795555 Min-sequence-length: 1

Got message from job at time 07-05-2023 13:46:08: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 11 Total-length: 87224918 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44638928 Median-sequence-length: 1113655 Max-sequence-length: 44638928 Min-sequence-length: 22688

Got message from job at time 07-05-2023 13:46:08: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 7 Total-length: 135909779 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24600103 Median-sequence-length: 19013627 Max-sequence-length: 55621398 Min-sequence-length: 1048969

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG00735.1: Input-sample: HG00735.1.sanitized.fa Total-sequences: 3 Total-length: 133940000 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 72014018 Median-sequence-length: 61881789 Max-sequence-length: 72014018 Min-sequence-length: 44193

Got message from job at time 07-05-2023 13:46:09: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 4 Total-length: 83722974 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 58678016 Median-sequence-length: 16108462 Max-sequence-length: 58678016 Min-sequence-length: 104652

2023-07-05 13:46:09.044525: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 1.5491 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 10 Total-length: 59795879 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30868711 Median-sequence-length: 4970122 Max-sequence-length: 30868711 Min-sequence-length: 109047

Got message from job at time 07-05-2023 13:46:09: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 5 Total-length: 91952236 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33861033 Median-sequence-length: 11019904 Max-sequence-length: 43583184 Min-sequence-length: 691162

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 7 Total-length: 134067866 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34747916 Median-sequence-length: 14735009 Max-sequence-length: 45201032 Min-sequence-length: 1623010

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 7 Total-length: 80605148 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43693601 Median-sequence-length: 8750341 Max-sequence-length: 43693601 Min-sequence-length: 867798

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 12 Total-length: 84505882 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15849822 Median-sequence-length: 3674751 Max-sequence-length: 38805253 Min-sequence-length: 72067

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 10 Total-length: 134368611 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18059066 Median-sequence-length: 12203265 Max-sequence-length: 43796927 Min-sequence-length: 458251

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 3 Total-length: 81018087 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 76778322 Median-sequence-length: 4149666 Max-sequence-length: 76778322 Min-sequence-length: 90099

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 10 Total-length: 240387675 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 81282023 Median-sequence-length: 6354863 Max-sequence-length: 85246857 Min-sequence-length: 23334

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 4 Total-length: 82639865 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 66532046 Median-sequence-length: 9853654 Max-sequence-length: 66532046 Min-sequence-length: 96072

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 12 Total-length: 61557378 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 13168146 Median-sequence-length: 4018374 Max-sequence-length: 18579267 Min-sequence-length: 187028

Got message from job at time 07-05-2023 13:46:09: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 17 Total-length: 133964152 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 13092038 Median-sequence-length: 4337978 Max-sequence-length: 33664008 Min-sequence-length: 983315

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 7 Total-length: 85745041 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19576504 Median-sequence-length: 15012246 Max-sequence-length: 33871539 Min-sequence-length: 66099

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 11 Total-length: 62172746 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32091322 Median-sequence-length: 1013411 Max-sequence-length: 32091322 Min-sequence-length: 136823

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 11 Total-length: 134536368 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24750025 Median-sequence-length: 9878239 Max-sequence-length: 28312058 Min-sequence-length: 21888

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 6 Total-length: 135602084 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29246490 Median-sequence-length: 21231956 Max-sequence-length: 61912019 Min-sequence-length: 411550

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 4 Total-length: 134909770 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 72970642 Median-sequence-length: 40916967 Max-sequence-length: 72970642 Min-sequence-length: 28271

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 9 Total-length: 84773579 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54710158 Median-sequence-length: 1012248 Max-sequence-length: 54710158 Min-sequence-length: 70957

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 3 Total-length: 82761987 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 53055733 Median-sequence-length: 24936173 Max-sequence-length: 53055733 Min-sequence-length: 4770081

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 3 Total-length: 85038069 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 46900895 Median-sequence-length: 24941069 Max-sequence-length: 46900895 Min-sequence-length: 13196105

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 8 Total-length: 62150985 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 10327816 Median-sequence-length: 5579305 Max-sequence-length: 29911515 Min-sequence-length: 1332469

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 10 Total-length: 133826866 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34185574 Median-sequence-length: 6227697 Max-sequence-length: 41401121 Min-sequence-length: 19426

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 10 Total-length: 139170302 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17932347 Median-sequence-length: 14981334 Max-sequence-length: 37766793 Min-sequence-length: 1258184

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 6 Total-length: 134542598 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42481703 Median-sequence-length: 20676647 Max-sequence-length: 61820331 Min-sequence-length: 1999315

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 7 Total-length: 134615278 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34669379 Median-sequence-length: 17866344 Max-sequence-length: 51620918 Min-sequence-length: 804668

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 12 Total-length: 231178706 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 60074637 Median-sequence-length: 8084562 Max-sequence-length: 71731351 Min-sequence-length: 50424

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 14 Total-length: 62284323 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18236408 Median-sequence-length: 1214323 Max-sequence-length: 21255590 Min-sequence-length: 26173

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 10 Total-length: 88453654 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22550068 Median-sequence-length: 5108645 Max-sequence-length: 30209955 Min-sequence-length: 249715

Got message from job at time 07-05-2023 13:46:09: Assembly stats for NA18906.1: Input-sample: NA18906.1.sanitized.fa Total-sequences: 8 Total-length: 134357736 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27273554 Median-sequence-length: 20484858 Max-sequence-length: 59771328 Min-sequence-length: 31197

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 1 Total-length: 134268502 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 134268502 Median-sequence-length: 134268502 Max-sequence-length: 134268502 Min-sequence-length: 134268502

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 3 Total-length: 80089686 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 55253713 Median-sequence-length: 24797224 Max-sequence-length: 55253713 Min-sequence-length: 38749

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 4 Total-length: 77134019 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17815077 Median-sequence-length: 17815077 Max-sequence-length: 34533606 Min-sequence-length: 9946494

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 14 Total-length: 62047579 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12684204 Median-sequence-length: 1318253 Max-sequence-length: 14438575 Min-sequence-length: 44472

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 12 Total-length: 134737759 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 21025201 Median-sequence-length: 6807094 Max-sequence-length: 31244622 Min-sequence-length: 541999

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 3 Total-length: 133876208 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 89895720 Median-sequence-length: 28289037 Max-sequence-length: 89895720 Min-sequence-length: 15691451

Got message from job at time 07-05-2023 13:46:09: Assembly stats for NA20129.1: Input-sample: NA20129.1.sanitized.fa Total-sequences: 5 Total-length: 82456154 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24044020 Median-sequence-length: 12503534 Max-sequence-length: 33546602 Min-sequence-length: 3609721

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 2 Total-length: 83747867 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 58723439 Median-sequence-length: 58723439 Max-sequence-length: 58723439 Min-sequence-length: 25024428

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 25 Total-length: 133726840 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15755455 Median-sequence-length: 1151515 Max-sequence-length: 41110690 Min-sequence-length: 75973

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 6 Total-length: 84448521 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 50862476 Median-sequence-length: 12367024 Max-sequence-length: 50862476 Min-sequence-length: 17807

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 3 Total-length: 62202928 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52263156 Median-sequence-length: 6999966 Max-sequence-length: 52263156 Min-sequence-length: 2939806

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 9 Total-length: 86839482 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52087615 Median-sequence-length: 1560945 Max-sequence-length: 52087615 Min-sequence-length: 59872

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 13 Total-length: 89058522 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12708769 Median-sequence-length: 3356432 Max-sequence-length: 36565611 Min-sequence-length: 221597

Got message from job at time 07-05-2023 13:46:09: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 101991189 Proportion-repeat-masked: 0.170111 ProportionNs: 0.170111 Total-Ns: 17349864 N50: 101991189 Median-sequence-length: 101991189 Max-sequence-length: 101991189 Min-sequence-length: 101991189

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 7 Total-length: 88829703 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 46776517 Median-sequence-length: 5960160 Max-sequence-length: 46776517 Min-sequence-length: 122313

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 8 Total-length: 130895675 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32311507 Median-sequence-length: 14727326 Max-sequence-length: 50074459 Min-sequence-length: 34159

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 7 Total-length: 138377356 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27924376 Median-sequence-length: 23304872 Max-sequence-length: 44575871 Min-sequence-length: 3253352

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 6 Total-length: 84016685 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 59044574 Median-sequence-length: 5915925 Max-sequence-length: 59044574 Min-sequence-length: 125101

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 4 Total-length: 85160311 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52409205 Median-sequence-length: 24698663 Max-sequence-length: 52409205 Min-sequence-length: 249731

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 16 Total-length: 89234448 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23296529 Median-sequence-length: 2000648 Max-sequence-length: 24855065 Min-sequence-length: 85745

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 8 Total-length: 89749545 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 47568849 Median-sequence-length: 5336523 Max-sequence-length: 47568849 Min-sequence-length: 621930

Got message from job at time 07-05-2023 13:46:09: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 14654 Total-length: 138089475 Proportion-repeat-masked: 0.004004 ProportionNs: 0.004004 Total-Ns: 552880 N50: 81072 Median-sequence-length: 114 Max-sequence-length: 3540193 Min-sequence-length: 1

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 4 Total-length: 137671192 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 89073478 Median-sequence-length: 45172987 Max-sequence-length: 89073478 Min-sequence-length: 75023

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 7 Total-length: 132161544 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 50293521 Median-sequence-length: 7714717 Max-sequence-length: 54155640 Min-sequence-length: 32219

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 4 Total-length: 134585327 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52397973 Median-sequence-length: 52397973 Max-sequence-length: 61890422 Min-sequence-length: 1051670

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 3 Total-length: 90231620 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26079101 Median-sequence-length: 26079101 Max-sequence-length: 39135689 Min-sequence-length: 25016830

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 14 Total-length: 95475994 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20668780 Median-sequence-length: 3424423 Max-sequence-length: 33355157 Min-sequence-length: 44578

Got message from job at time 07-05-2023 13:46:09: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 7 Total-length: 135212390 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43574262 Median-sequence-length: 7530412 Max-sequence-length: 61902125 Min-sequence-length: 48317

Got message from job at time 07-05-2023 13:46:10: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 7 Total-length: 88815066 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15008280 Median-sequence-length: 12178383 Max-sequence-length: 33995331 Min-sequence-length: 622720

Got message from job at time 07-05-2023 13:46:10: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 13 Total-length: 130148389 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14735336 Median-sequence-length: 7035732 Max-sequence-length: 34778358 Min-sequence-length: 19109

Got message from job at time 07-05-2023 13:46:10: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 7 Total-length: 83862864 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14832721 Median-sequence-length: 9852246 Max-sequence-length: 33848197 Min-sequence-length: 1237318

Got message from job at time 07-05-2023 13:46:10: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 5 Total-length: 134743290 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 82997051 Median-sequence-length: 2757582 Max-sequence-length: 82997051 Min-sequence-length: 636789

Got message from job at time 07-05-2023 13:46:10: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 3 Total-length: 81353564 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 64004508 Median-sequence-length: 16098166 Max-sequence-length: 64004508 Min-sequence-length: 1250890

2023-07-05 13:46:10.682694: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/GRCh38.fa HG02145.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/HG02145.1.fa HG02723.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/HG02723.1.fa HG03516.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/HG03516.1.fa _MINIGRAPH_ /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/_MINIGRAPH_.fa --speciesTree (GRCh38:0.025,HG02145.1:0.025,HG02723.1:0.025,HG03516.1:0.025,_MINIGRAPH_:0.025)Anc0; --logLevel INFO --alignments /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/Anc0_primary.paf --params /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/Anc0.config.xml --outputFile /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/Anc0.c2h --outputHalFastaFile /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/Anc0.c2h.fa --outputReferenceFile /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chrEBV): Params file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/Anc0.config.xml
Got message from job at time 07-05-2023 13:46:10: Assembly stats for HG01071.1: Input-sample: HG01071.1.sanitized.fa Total-sequences: 8 Total-length: 136762557 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30004141 Median-sequence-length: 16653949 Max-sequence-length: 45217403 Min-sequence-length: 157758

cactus_consolidated(chrEBV): Output file string : /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/Anc0.c2h
cactus_consolidated(chrEBV): Output hal fasta file string : /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/Anc0.c2h.fa
cactus_consolidated(chrEBV): Output reference fasta file string : /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/Anc0.ref
cactus_consolidated(chrEBV): Sequence files and events: GRCh38 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/GRCh38.fa HG02145.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/HG02145.1.fa HG02723.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/HG02723.1.fa HG03516.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/HG03516.1.fa _MINIGRAPH_ /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/_MINIGRAPH_.fa
Got message from job at time 07-05-2023 13:46:10: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 6 Total-length: 134917680 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 46068590 Median-sequence-length: 22016291 Max-sequence-length: 51028937 Min-sequence-length: 36544

cactus_consolidated(chrEBV): Alignments file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/Anc0_primary.paf
cactus_consolidated(chrEBV): Secondary alignments file: (null)
cactus_consolidated(chrEBV): Constraint alignments file: (null)
Got message from job at time 07-05-2023 13:46:10: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 2 Total-length: 133757412 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 77275117 Median-sequence-length: 77275117 Max-sequence-length: 77275117 Min-sequence-length: 56482295

cactus_consolidated(chrEBV): Species tree: (GRCh38:0.025,HG02145.1:0.025,HG02723.1:0.025,HG03516.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chrEBV): Outgroup events:
cactus_consolidated(chrEBV): Reference event: Anc0
cactus_consolidated(chrEBV): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chrEBV): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chrEBV): Constructed the first flower
cactus_consolidated(chrEBV): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/HG02723.1.fa to HG02723.1
cactus_consolidated(chrEBV): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/HG02723.1.fa
cactus_consolidated(chrEBV): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/HG02723.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrEBV): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/HG03516.1.fa to HG03516.1
Got message from job at time 07-05-2023 13:46:10: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 15 Total-length: 84459759 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12999291 Median-sequence-length: 2048519 Max-sequence-length: 24832603 Min-sequence-length: 155164

Got message from job at time 07-05-2023 13:46:10: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 4 Total-length: 82683551 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 57583722 Median-sequence-length: 15094284 Max-sequence-length: 57583722 Min-sequence-length: 58817

Got message from job at time 07-05-2023 13:46:10: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 5 Total-length: 134262553 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44568921 Median-sequence-length: 44250376 Max-sequence-length: 44763736 Min-sequence-length: 43375

Got message from job at time 07-05-2023 13:46:10: Assembly stats for HG03540.1: Input-sample: HG03540.1.sanitized.fa Total-sequences: 3 Total-length: 83985526 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 59093146 Median-sequence-length: 24869350 Max-sequence-length: 59093146 Min-sequence-length: 23030

Got message from job at time 07-05-2023 13:46:10: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 4 Total-length: 134154474 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54425257 Median-sequence-length: 54425257 Max-sequence-length: 55647369 Min-sequence-length: 6222480

Got message from job at time 07-05-2023 13:46:11: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 135086622 Proportion-repeat-masked: 0.004093 ProportionNs: 0.004093 Total-Ns: 552880 N50: 135086622 Median-sequence-length: 135086622 Max-sequence-length: 135086622 Min-sequence-length: 135086622

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 4 Total-length: 134991282 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 81635881 Median-sequence-length: 40915956 Max-sequence-length: 81635881 Min-sequence-length: 415077

cactus_consolidated(chrEBV): Sequence graph statistics after annealing:
Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 2 Total-length: 83004698 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 58081073 Median-sequence-length: 58081073 Max-sequence-length: 58081073 Min-sequence-length: 24923625

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG01071.1: Input-sample: HG01071.1.sanitized.fa Total-sequences: 4 Total-length: 82602131 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42152477 Median-sequence-length: 24864011 Max-sequence-length: 42152477 Min-sequence-length: 5386435

Got message from job at time 07-05-2023 13:46:11: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 18 Total-length: 188622846 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18883585 Median-sequence-length: 5379855 Max-sequence-length: 49154334 Min-sequence-length: 565076

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 4 Total-length: 84987923 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24845059 Median-sequence-length: 24845059 Max-sequence-length: 32036912 Min-sequence-length: 4234384

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 7 Total-length: 136038045 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 38551351 Median-sequence-length: 7664687 Max-sequence-length: 66540509 Min-sequence-length: 2346665

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 5 Total-length: 135126464 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 73220214 Median-sequence-length: 21003407 Max-sequence-length: 73220214 Min-sequence-length: 2342809

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 4 Total-length: 134229242 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 72290987 Median-sequence-length: 45242954 Max-sequence-length: 72290987 Min-sequence-length: 46547

cactus_consolidated(chrEBV): There were 5447 blocks in the sequence graph, representing 7225864 total aligned bases
cactus_consolidated(chrEBV): Block degree stats: min 1, avg 62.577566, median 61, max 119
cactus_consolidated(chrEBV): Block support stats: min 0.000000, avg 0.022360, median 0.014706, max 0.500000
cactus_consolidated(chrEBV): Starting melting round with a minimum chain length of 2
Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 5 Total-length: 83714323 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 55725769 Median-sequence-length: 11770820 Max-sequence-length: 55725769 Min-sequence-length: 29429

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 6 Total-length: 135111915 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29077043 Median-sequence-length: 26550395 Max-sequence-length: 49000671 Min-sequence-length: 6223438

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 6 Total-length: 137907052 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39691040 Median-sequence-length: 25155062 Max-sequence-length: 52942646 Min-sequence-length: 2003457

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 5 Total-length: 80848920 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 48706258 Median-sequence-length: 3679296 Max-sequence-length: 48706258 Min-sequence-length: 1083601

Got message from job at time 07-05-2023 13:46:11: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 10337 Total-length: 105547997 Proportion-repeat-masked: 0.164379 ProportionNs: 0.164379 Total-Ns: 17349864 N50: 102501 Median-sequence-length: 97 Max-sequence-length: 19796638 Min-sequence-length: 1

cactus_consolidated(chrEBV): A melting round is destroying 317 blocks with an average degree of 74.384858 from chains with length less than 2. Total aligned bases lost: 23580
Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 3 Total-length: 134860221 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44616614 Median-sequence-length: 44616614 Max-sequence-length: 61865380 Min-sequence-length: 28378227

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 6 Total-length: 131874775 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32328156 Median-sequence-length: 23299927 Max-sequence-length: 50191715 Min-sequence-length: 1852390

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG00741.1: Input-sample: HG00741.1.sanitized.fa Total-sequences: 2 Total-length: 84509613 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 78687368 Median-sequence-length: 78687368 Max-sequence-length: 78687368 Min-sequence-length: 5822245

cactus_consolidated(chrEBV): Starting melting round with a minimum chain length of 32
Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 3 Total-length: 134072725 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 119735768 Median-sequence-length: 13931642 Max-sequence-length: 119735768 Min-sequence-length: 405315

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 6 Total-length: 134848708 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42841453 Median-sequence-length: 25694626 Max-sequence-length: 47330144 Min-sequence-length: 1251543

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG03453.1: Input-sample: HG03453.1.sanitized.fa Total-sequences: 3 Total-length: 83431670 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 63913288 Median-sequence-length: 9973866 Max-sequence-length: 63913288 Min-sequence-length: 9544516

2023-07-05 13:46:11.392547: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/GRCh38.fa HG00438.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00438.2.fa HG00621.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00621.2.fa HG00673.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00673.2.fa HG00733.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00733.2.fa HG00735.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00735.2.fa HG00741.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00741.2.fa HG01106.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01106.2.fa HG01109.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01109.2.fa HG01123.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01123.2.fa HG01175.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01175.2.fa HG01243.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01243.2.fa HG01258.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01258.2.fa HG01358.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01358.2.fa HG01361.2 /da <...> ac396e74254b92ca/2f11/4db2/tmp6husnflm/Anc0.c2h.fa --outputReferenceFile /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 5 Total-length: 134984087 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41895577 Median-sequence-length: 40987880 Max-sequence-length: 48808261 Min-sequence-length: 674874

cactus_consolidated(chrM): Params file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/Anc0.config.xml
cactus_consolidated(chrM): Output file string : /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/Anc0.c2h
cactus_consolidated(chrM): Output hal fasta file string : /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/Anc0.c2h.fa
cactus_consolidated(chrM): Output reference fasta file string : /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/Anc0.ref
Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG03540.1: Input-sample: HG03540.1.sanitized.fa Total-sequences: 6 Total-length: 135850928 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40909152 Median-sequence-length: 19159558 Max-sequence-length: 54760938 Min-sequence-length: 52921

cactus_consolidated(chrM): Sequence files and events: GRCh38 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/GRCh38.fa HG00438.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00438.2.fa HG00621.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00621.2.fa HG00673.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00673.2.fa HG00733.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00733.2.fa HG00735.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00735.2.fa HG00741.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00741.2.fa HG01106.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01106.2.fa HG01109.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01109.2.fa HG01123.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01123.2.fa HG01175.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01175.2.fa HG01243.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01243.2.fa HG01258.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01258.2.fa HG01358.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01358.2.fa HG01361.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01361.2.fa HG01891.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01891.2.fa HG01928.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01928.2.fa HG01952.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01952.2.fa HG01978.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01978.2.fa HG02055.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02055.2.fa HG02080.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02080.2.fa HG02109.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02109.2.fa HG02145.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02145.2.fa HG02148.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02148.2.fa HG02257.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02257.2.fa HG02486.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02486.2.fa HG02559.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02559.2.fa HG02572.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02572.2.fa HG02622.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02622.2.fa HG02630.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02630.2.fa HG02717.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02717.2.fa HG02723.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02723.2.fa HG02818.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02818.2.fa HG02886.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02886.2.fa HG03098.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG03098.2.fa HG03453.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG03453.2.fa HG03486.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG03486.2.fa HG03492.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG03492.2.fa HG03516.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG03516.2.fa HG03540.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG03540.2.fa HG03579.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG03579.2.fa NA18906.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/NA18906.2.fa NA20129.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/NA20129.2.fa CHM13 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/CHM13.fa _MINIGRAPH_ /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/_MINIGRAPH_.fa
cactus_consolidated(chrM): Alignments file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/Anc0_primary.paf
cactus_consolidated(chrM): Secondary alignments file: (null)
cactus_consolidated(chrM): Constraint alignments file: (null)
cactus_consolidated(chrM): Species tree: (GRCh38:0.025,HG00438.2:0.025,HG00621.2:0.025,HG00673.2:0.025,HG00733.2:0.025,HG00735.2:0.025,HG00741.2:0.025,HG01106.2:0.025,HG01109.2:0.025,HG01123.2:0.025,HG01175.2:0.025,HG01243.2:0.025,HG01258.2:0.025,HG01358.2:0.025,HG01361.2:0.025,HG01891.2:0.025,HG01928.2:0.025,HG01952.2:0.025,HG01978.2:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.2:0.025,HG02145.2:0.025,HG02148.2:0.025,HG02257.2:0.025,HG02486.2:0.025,HG02559.2:0.025,HG02572.2:0.025,HG02622.2:0.025,HG02630.2:0.025,HG02717.2:0.025,HG02723.2:0.025,HG02818.2:0.025,HG02886.2:0.025,HG03098.2:0.025,HG03453.2:0.025,HG03486.2:0.025,HG03492.2:0.025,HG03516.2:0.025,HG03540.2:0.025,HG03579.2:0.025,NA18906.2:0.025,NA20129.2:0.025,CHM13:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chrM): Outgroup events:
cactus_consolidated(chrM): Reference event: Anc0
cactus_consolidated(chrM): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chrM): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chrM): Constructed the first flower
cactus_consolidated(chrM): Going to build the event tree with newick string: (GRCh38:0.025,HG00438.2:0.025,HG00621.2:0.025,HG00673.2:0.025,HG00733.2:0.025,HG00735.2:0.025,HG00741.2:0.025,HG01106.2:0.025,HG01109.2:0.025,HG01123.2:0.025,HG01175.2:0.025,HG01243.2:0.025,HG01258.2:0.025,HG01358.2:0.025,HG01361.2:0.025,HG01891.2:0.025,HG01928.2:0.025,HG01952.2:0.025,HG01978.2:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.2:0.025,HG02145.2:0.025,HG02148.2:0.025,HG02257.2:0.025,HG02486.2:0.025,HG02559.2:0.025,HG02572.2:0.025,HG02622.2:0.025,HG02630.2:0.025,HG02717.2:0.025,HG02723.2:0.025,HG02818.2:0.025,HG02886.2:0.025,HG03098.2:0.025,HG03453.2:0.025,HG03486.2:0.025,HG03492.2:0.025,HG03516.2:0.025,HG03540.2:0.025,HG03579.2:0.025,NA18906.2:0.025,NA20129.2:0.025,CHM13:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chrM): Parsed the tree
cactus_consolidated(chrM): Constructed the basic event tree
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/GRCh38.fa to GRCh38
cactus_consolidated(chrM): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/GRCh38.fa
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/GRCh38.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00438.2.fa to HG00438.2
cactus_consolidated(chrM): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00438.2.fa
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00621.2.fa to HG00621.2
cactus_consolidated(chrM): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00621.2.fa
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00621.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00673.2.fa to HG00673.2
cactus_consolidated(chrM): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00673.2.fa
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00673.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00733.2.fa to HG00733.2
cactus_consolidated(chrM): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00733.2.fa
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00735.2.fa to HG00735.2
cactus_consolidated(chrM): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00735.2.fa
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00735.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00741.2.fa to HG00741.2
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01106.2.fa to HG01106.2
cactus_consolidated(chrM): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01106.2.fa
Got message from job at time 07-05-2023 13:46:11: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 10 Total-length: 133584912 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22743356 Median-sequence-length: 8848946 Max-sequence-length: 48606169 Min-sequence-length: 362944

cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01109.2.fa to HG01109.2
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01123.2.fa to HG01123.2
cactus_consolidated(chrM): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01123.2.fa
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01123.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01175.2.fa to HG01175.2
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01243.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01258.2.fa to HG01258.2
cactus_consolidated(chrM): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01258.2.fa
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01258.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01361.2.fa
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01361.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01891.2.fa to HG01891.2
cactus_consolidated(chrM): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01891.2.fa
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01952.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01978.2.fa to HG01978.2
cactus_consolidated(chrM): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01978.2.fa
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01978.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02080.2.fa to HG02080.2
cactus_consolidated(chrM): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02080.2.fa
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02080.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02109.2.fa to HG02109.2
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02145.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02148.2.fa to HG02148.2
cactus_consolidated(chrM): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02148.2.fa
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02148.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02486.2.fa
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02559.2.fa to HG02559.2
cactus_consolidated(chrM): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02559.2.fa
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02622.2.fa to HG02622.2
cactus_consolidated(chrM): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02622.2.fa
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02622.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02630.2.fa to HG02630.2
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02723.2.fa to HG02723.2
cactus_consolidated(chrM): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02723.2.fa
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02723.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02818.2.fa to HG02818.2
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG02886.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG03098.2.fa to HG03098.2
cactus_consolidated(chrM): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG03098.2.fa
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG03098.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG03486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG03492.2.fa to HG03492.2
cactus_consolidated(chrM): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG03492.2.fa
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG03492.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG03516.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG03540.2.fa to HG03540.2
cactus_consolidated(chrM): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG03540.2.fa
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG03540.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/NA18906.2.fa
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/NA18906.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/NA20129.2.fa to NA20129.2
cactus_consolidated(chrM): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/NA20129.2.fa
cactus_consolidated(chrM): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/_MINIGRAPH_.fa
cactus_consolidated(chrM): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrM): Constructed the initial flower with 45 sequences and 47 events with string: ((GRCh38:0.025,HG00438.2:0.025,HG00621.2:0.025,HG00673.2:0.025,HG00733.2:0.025,HG00735.2:0.025,HG00741.2:0.025,HG01106.2:0.025,HG01109.2:0.025,HG01123.2:0.025,HG01175.2:0.025,HG01243.2:0.025,HG01258.2:0.025,HG01358.2:0.025,HG01361.2:0.025,HG01891.2:0.025,HG01928.2:0.025,HG01952.2:0.025,HG01978.2:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.2:0.025,HG02145.2:0.025,HG02148.2:0.025,HG02257.2:0.025,HG02486.2:0.025,HG02559.2:0.025,HG02572.2:0.025,HG02622.2:0.025,HG02630.2:0.025,HG02717.2:0.025,HG02723.2:0.025,HG02818.2:0.025,HG02886.2:0.025,HG03098.2:0.025,HG03453.2:0.025,HG03486.2:0.025,HG03492.2:0.025,HG03516.2:0.025,HG03540.2:0.025,HG03579.2:0.025,NA18906.2:0.025,NA20129.2:0.025,CHM13:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chrM): Established the first Flower in the hierarchy, 0 seconds have elapsed
cactus_consolidated(chrM): There were 182 blocks in the sequence graph, representing 732145 total aligned bases
cactus_consolidated(chrM): Block degree stats: min 1, avg 20.829670, median 2, max 45
cactus_consolidated(chrM): Block support stats: min 0.000000, avg 0.019472, median 0.022222, max 0.500000
cactus_consolidated(chrM): Starting melting round with a minimum chain length of 2
cactus_consolidated(chrM): The blocks covered 512 columns for a total of 19871 aligned bases
cactus_consolidated(chrM): Destroying 0 recoverable blocks
cactus_consolidated(chrM): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chrM): Sequence graph statistics after melting:
cactus_consolidated(chrM): There were 119 blocks in the sequence graph, representing 683235 total aligned bases
cactus_consolidated(chrM): Block degree stats: min 1, avg 11.722689, median 1, max 45
cactus_consolidated(chrM): Block support stats: min 0.000000, avg 0.005415, median 0.000000, max 0.022222
Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 18 Total-length: 247699949 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31406757 Median-sequence-length: 10542024 Max-sequence-length: 46354037 Min-sequence-length: 43511

cactus_consolidated(chrM): Ran cactus caf, 0 seconds have elapsed
cactus_consolidated(chrM): Ran extended flowers ready for bar, 0 seconds have elapsed
cactus_consolidated(chrEBV): A melting round is destroying 2536 blocks with an average degree of 67.749211 from chains with length less than 32. Total aligned bases lost: 932940
Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 6 Total-length: 137514611 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40909238 Median-sequence-length: 38282847 Max-sequence-length: 44055703 Min-sequence-length: 39486

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG02622.1: Input-sample: HG02622.1.sanitized.fa Total-sequences: 6 Total-length: 134883199 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 46088414 Median-sequence-length: 21045620 Max-sequence-length: 51928645 Min-sequence-length: 31232

cactus_consolidated(chrEBV): Starting melting round with a minimum chain length of 512
Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 1 Total-length: 134399994 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 134399994 Median-sequence-length: 134399994 Max-sequence-length: 134399994 Min-sequence-length: 134399994

cactus_consolidated(chrM): Ran cactus bar (use poa:1), 0 seconds have elapsed
cactus_consolidated(chrM): There are 4 layers in the flowers hierarchy
cactus_consolidated(chrM): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chrM): Chose reference event 2: Anc0
cactus_consolidated(chrM): For flower: 0 we have 0 nodes for: 148 ends, 1 chains, 0 stubs and 29 blocks
cactus_consolidated(chrM): Building a matching for 0 stub nodes in the top level problem from 90 total stubs of which 2 attached , 148 total ends, 1 chains, 29 blocks 30 groups and 45 sequences
cactus_consolidated(chrM): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chrM): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chrM): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chrM): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
cactus_consolidated(chrM): In the 1 layer there are 30 flowers in the flowers hierarchy
cactus_consolidated(chrM): In the 2 layer there are 39 flowers in the flowers hierarchy
Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 3 Total-length: 133508387 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40933346 Median-sequence-length: 40933346 Max-sequence-length: 52068597 Min-sequence-length: 40506444

cactus_consolidated(chrM): In the 3 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chrM): Ran cactus make reference, 0 seconds have elapsed
Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 5 Total-length: 83139916 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 56121015 Median-sequence-length: 8759264 Max-sequence-length: 56121015 Min-sequence-length: 2187085

cactus_consolidated(chrM): Ran cactus make reference bottom up coordinates, 0 seconds have elapsed
cactus_consolidated(chrM): Ran cactus make reference top down coordinates, 0 seconds have elapsed
Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 4 Total-length: 82257105 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 48753445 Median-sequence-length: 24938816 Max-sequence-length: 48753445 Min-sequence-length: 1364119

cactus_consolidated(chrM): Ran cactus to hal stage, 0 seconds have elapsed
cactus_consolidated(chrM): Dumped sequences for hal file, 0 seconds have elapsed
cactus_consolidated(chrM): Dumped reference sequences, 0 seconds have elapsed
Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 2 Total-length: 83208129 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 58286004 Median-sequence-length: 58286004 Max-sequence-length: 58286004 Min-sequence-length: 24922125

cactus_consolidated(chrM): Cactus consolidated is done!, 0 seconds have elapsed
2023-07-05 13:46:11.594022: Successfully ran cactus_consolidated(chrM): "cactus_consolidated --sequences 'GRCh38 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/GRCh38.fa HG00438.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00438.2.fa HG00621.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00621.2.fa HG00673.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00673.2.fa HG00733.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00733.2.fa HG00735.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00735.2.fa HG00741.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG00741.2.fa HG01106.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01106.2.fa HG01109.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01109.2.fa HG01123.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01123.2.fa HG01175.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01175.2.fa HG01243.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01243.2.fa HG01258.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG01258.2.fa HG01358.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/HG <...> 9eaa5514ac396e74254b92ca/2f11/4db2/tmp6husnflm/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 0.1969 seconds and 25.6 Mi memory with job-memory 3.7 Gi. Percent utilization: 0.6719
cactus_consolidated(chrEBV): A melting round is destroying 51 blocks with an average degree of 64.039216 from chains with length less than 512. Total aligned bases lost: 82133
Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 5 Total-length: 135098429 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 50115675 Median-sequence-length: 20829693 Max-sequence-length: 61896754 Min-sequence-length: 164373

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 7 Total-length: 134940324 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37600260 Median-sequence-length: 13632526 Max-sequence-length: 61940485 Min-sequence-length: 37107

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 5 Total-length: 136992549 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 38561703 Median-sequence-length: 20960248 Max-sequence-length: 56111411 Min-sequence-length: 2357718

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 3 Total-length: 135151270 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44622279 Median-sequence-length: 44622279 Max-sequence-length: 61848712 Min-sequence-length: 28680279

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 3 Total-length: 81976074 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 48324995 Median-sequence-length: 24961344 Max-sequence-length: 48324995 Min-sequence-length: 8689735

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 12 Total-length: 137114219 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26556406 Median-sequence-length: 4214215 Max-sequence-length: 48635138 Min-sequence-length: 30108

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 2 Total-length: 83429496 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 58671658 Median-sequence-length: 58671658 Max-sequence-length: 58671658 Min-sequence-length: 24757838

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 7 Total-length: 134237213 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35296144 Median-sequence-length: 16678120 Max-sequence-length: 37753275 Min-sequence-length: 1205939

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 4 Total-length: 135402395 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 73344617 Median-sequence-length: 46086289 Max-sequence-length: 73344617 Min-sequence-length: 211125

Got message from job at time 07-05-2023 13:46:11: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 135127769 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 135127769 Median-sequence-length: 135127769 Max-sequence-length: 135127769 Min-sequence-length: 135127769

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 4 Total-length: 135069813 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 45252955 Median-sequence-length: 45252955 Max-sequence-length: 47869973 Min-sequence-length: 5633075

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 1 Total-length: 80214408 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 80214408 Median-sequence-length: 80214408 Max-sequence-length: 80214408 Min-sequence-length: 80214408

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 5 Total-length: 82430412 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 66091756 Median-sequence-length: 99130 Max-sequence-length: 66091756 Min-sequence-length: 73900

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 6 Total-length: 85219031 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 55715224 Median-sequence-length: 8831220 Max-sequence-length: 55715224 Min-sequence-length: 15915

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 6 Total-length: 84399647 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 59411870 Median-sequence-length: 7276183 Max-sequence-length: 59411870 Min-sequence-length: 127525

cactus_consolidated(chrEBV): A melting round is destroying 51 blocks with an average degree of 47.960784 from chains with length less than 2048. Total aligned bases lost: 68039
Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 4 Total-length: 84713519 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51894695 Median-sequence-length: 14925981 Max-sequence-length: 51894695 Min-sequence-length: 7977122

Got message from job at time 07-05-2023 13:46:11: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 5 Total-length: 82908041 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 48786117 Median-sequence-length: 9229975 Max-sequence-length: 48786117 Min-sequence-length: 56287

Got message from job at time 07-05-2023 13:46:12: Ran cactus consolidated okay
cactus_consolidated(chrEBV): Destroying 1504 recoverable blocks
cactus_consolidated(chrEBV): The blocks covered 100639 columns for a total of 4246260 aligned bases
cactus_consolidated(chrEBV): Destroying 0 recoverable blocks
cactus_consolidated(chrEBV): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chrEBV): Sequence graph statistics after melting:
cactus_consolidated(chrEBV): There were 514 blocks in the sequence graph, representing 653928 total aligned bases
cactus_consolidated(chrEBV): Block degree stats: min 1, avg 19.608949, median 1, max 119
cactus_consolidated(chrEBV): Block support stats: min 0.000000, avg 0.007039, median 0.000000, max 0.500000
cactus_consolidated(chrEBV): Attaching the sequence to the cactus root 1131, header s189419 with length 171823 and 35296 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrEBV): Ran cactus caf, 2 seconds have elapsed
cactus_consolidated(chrEBV): Ran extended flowers ready for bar, 2 seconds have elapsed
2023-07-05 13:46:13.166968: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/1cbf/2d05/tmp9wtj1_ql/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p"
Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-428qwsvu v1 with job batch system ID: 2663 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:46:13: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 7 Total-length: 77852414 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16496715 Median-sequence-length: 12116203 Max-sequence-length: 20398949 Min-sequence-length: 2815922

Got message from job at time 07-05-2023 13:46:13: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 8 Total-length: 78428631 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12092178 Median-sequence-length: 11322196 Max-sequence-length: 18792769 Min-sequence-length: 151004

Got message from job at time 07-05-2023 13:46:13: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 4 Total-length: 77063714 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52490985 Median-sequence-length: 16422193 Max-sequence-length: 52490985 Min-sequence-length: 2817355

2023-07-05 13:46:14.090977: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/1cbf/2d05/tmp9wtj1_ql/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p'" in 0.9226 seconds and 17.9 Mi memory
2023-07-05 13:46:14.094525: Running the command: "cactus_analyseAssembly HG02572.1.sanitized.fa"
Got message from job at time 07-05-2023 13:46:14: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 7 Total-length: 77332941 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17878661 Median-sequence-length: 11340090 Max-sequence-length: 22764029 Min-sequence-length: 2818584

Issued job 'export_hal' kind-export_hal/instance-2g3bxonn v1 with job batch system ID: 2664 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 13:46:14.836234: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 0.7408 seconds and 17.8 Mi memory
2023-07-05 13:46:14.998691: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/a059/9781/tmpy36cqkps/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p"
2023-07-05 13:46:15.011736: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/cace/7f69/tmpoqv9aqcu/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p"
2023-07-05 13:46:15.329869: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/fbaa/ce06/tmp4fz8xs0e/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p"
2023-07-05 13:46:15.347186: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/015a/8bfb/tmparm1s29w/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p"
2023-07-05 13:46:15.354360: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/822c/c9d4/tmpjaroayyc/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p"
2023-07-05 13:46:15.355677: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/3584/0a7f/tmpqygd4dzp/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
2023-07-05 13:46:15.356794: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/9fd1/526b/tmpn2mwyb52/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p"
2023-07-05 13:46:15.363563: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/d62e/cdcb/tmpnslokrqt/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p"
2023-07-05 13:46:15.365903: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/874a/2e46/tmputgx7kv0/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p"
2023-07-05 13:46:15.366516: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/beca/63c7/tmpfram17bw/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p"
2023-07-05 13:46:15.369137: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/b8fd/5511/tmpkbw3ftwa/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p"
2023-07-05 13:46:15.370763: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/4834/74df/tmph4zyb9gm/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p"
2023-07-05 13:46:15.376297: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/cb01/9b46/tmppfc3ey74/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p"
2023-07-05 13:46:15.376444: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/7786/c6f8/tmpqwveay3i/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p"
2023-07-05 13:46:15.383499: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/e22d/db57/tmpuzeakeys/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-05 13:46:15.383478: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c063/fdbf/tmp5bh94zx2/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p"
2023-07-05 13:46:15.384901: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/68c0/b350/tmpekrrwtx2/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p"
2023-07-05 13:46:15.393540: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/14ec/d32a/tmpi5_rqduh/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-05 13:46:15.394284: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/f0b5/fa61/tmpdl0uos0s/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p"
Got message from job at time 07-05-2023 13:46:15: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 7 Total-length: 93651364 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 56830474 Median-sequence-length: 3186373 Max-sequence-length: 56830474 Min-sequence-length: 50725

Got message from job at time 07-05-2023 13:46:15: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 5 Total-length: 76178371 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20108444 Median-sequence-length: 15699009 Max-sequence-length: 21941689 Min-sequence-length: 5116723

Got message from job at time 07-05-2023 13:46:16: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 10 Total-length: 77451438 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12529944 Median-sequence-length: 8249843 Max-sequence-length: 16719248 Min-sequence-length: 893745

2023-07-05 13:46:16.119689: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/fbaa/ce06/tmp4fz8xs0e/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p'" in 0.7885 seconds and 52.9 Mi memory
2023-07-05 13:46:16.123916: Running the command: "cactus_analyseAssembly HG00741.2.sanitized.fa"
2023-07-05 13:46:16.139172: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/9fd1/526b/tmpn2mwyb52/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p'" in 0.7811 seconds and 51.9 Mi memory
2023-07-05 13:46:16.143009: Running the command: "cactus_analyseAssembly HG03579.1.sanitized.fa"
2023-07-05 13:46:16.143707: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/3584/0a7f/tmpqygd4dzp/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p'" in 0.7868 seconds and 51.9 Mi memory
2023-07-05 13:46:16.147326: Running the command: "cactus_analyseAssembly HG01123.2.sanitized.fa"
2023-07-05 13:46:16.160113: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/beca/63c7/tmpfram17bw/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p'" in 0.7926 seconds and 53.5 Mi memory
2023-07-05 13:46:16.160309: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/822c/c9d4/tmpjaroayyc/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p'" in 0.8049 seconds and 51.9 Mi memory
2023-07-05 13:46:16.161639: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/4834/74df/tmph4zyb9gm/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p'" in 0.7897 seconds and 55.5 Mi memory
2023-07-05 13:46:16.164957: Running the command: "cactus_analyseAssembly HG03516.1.sanitized.fa"
2023-07-05 13:46:16.165103: Running the command: "cactus_analyseAssembly HG02148.1.sanitized.fa"
2023-07-05 13:46:16.166123: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/cb01/9b46/tmppfc3ey74/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p'" in 0.7889 seconds and 53.7 Mi memory
2023-07-05 13:46:16.166815: Running the command: "cactus_analyseAssembly HG01952.1.sanitized.fa"
2023-07-05 13:46:16.170000: Running the command: "cactus_analyseAssembly HG01361.2.sanitized.fa"
2023-07-05 13:46:16.172223: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/7786/c6f8/tmpqwveay3i/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p'" in 0.7945 seconds and 51.9 Mi memory
2023-07-05 13:46:16.175788: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/015a/8bfb/tmparm1s29w/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p'" in 0.8274 seconds and 70.7 Mi memory
2023-07-05 13:46:16.176442: Running the command: "cactus_analyseAssembly NA21309.2.sanitized.fa"
2023-07-05 13:46:16.176699: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/226d/7591/tmps_8p330y/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p'" in 0.7891 seconds and 51.9 Mi memory
2023-07-05 13:46:16.179440: Running the command: "cactus_analyseAssembly HG02055.2.sanitized.fa"
2023-07-05 13:46:16.180415: Running the command: "cactus_analyseAssembly NA21309.1.sanitized.fa"
2023-07-05 13:46:16.184623: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c063/fdbf/tmp5bh94zx2/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p'" in 0.7999 seconds and 56.8 Mi memory
2023-07-05 13:46:16.186097: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/e22d/db57/tmpuzeakeys/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p'" in 0.8014 seconds and 51.9 Mi memory
2023-07-05 13:46:16.186867: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/874a/2e46/tmputgx7kv0/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p'" in 0.82 seconds and 51.9 Mi memory
2023-07-05 13:46:16.189287: Running the command: "cactus_analyseAssembly HG02486.1.sanitized.fa"
2023-07-05 13:46:16.190672: Running the command: "cactus_analyseAssembly HG03516.2.sanitized.fa"
2023-07-05 13:46:16.190808: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/59c6/e181/tmpb1xttfcd/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p'" in 0.7927 seconds and 51.9 Mi memory
2023-07-05 13:46:16.191210: Running the command: "cactus_analyseAssembly HG01109.2.sanitized.fa"
2023-07-05 13:46:16.191193: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/b8fd/5511/tmpkbw3ftwa/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p'" in 0.8209 seconds and 54.0 Mi memory
2023-07-05 13:46:16.194712: Running the command: "cactus_analyseAssembly HG02818.1.sanitized.fa"
2023-07-05 13:46:16.195346: Running the command: "cactus_analyseAssembly HG01928.1.sanitized.fa"
2023-07-05 13:46:16.198053: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/68c0/b350/tmpekrrwtx2/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p'" in 0.8122 seconds and 58.1 Mi memory
2023-07-05 13:46:16.201804: Running the command: "cactus_analyseAssembly HG01243.1.sanitized.fa"
2023-07-05 13:46:16.203572: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/d62e/cdcb/tmpnslokrqt/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p'" in 0.8387 seconds and 154.0 Mi memory
2023-07-05 13:46:16.203967: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/2996/c7c0/tmp6ucop8zc/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p'" in 0.8103 seconds and 51.9 Mi memory
2023-07-05 13:46:16.207848: Running the command: "cactus_analyseAssembly HG00673.2.sanitized.fa"
2023-07-05 13:46:16.208165: Running the command: "cactus_analyseAssembly HG02622.1.sanitized.fa"
2023-07-05 13:46:16.211769: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/e114/4bf7/tmptyoucbyh/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p'" in 0.8178 seconds and 59.1 Mi memory
2023-07-05 13:46:16.215205: Running the command: "cactus_analyseAssembly HG02559.2.sanitized.fa"
2023-07-05 13:46:16.222464: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/4b7b/29f2/tmp60ttapa4/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p'" in 0.8295 seconds and 60.2 Mi memory
2023-07-05 13:46:16.226418: Running the command: "cactus_analyseAssembly HG01361.1.sanitized.fa"
2023-07-05 13:46:16.228556: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/5c80/be9f/tmp0i445bp9/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p'" in 0.833 seconds and 51.9 Mi memory
2023-07-05 13:46:16.230922: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/a059/9781/tmpy36cqkps/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p'" in 1.2309 seconds and 51.9 Mi memory
2023-07-05 13:46:16.232474: Running the command: "cactus_analyseAssembly HG01243.2.sanitized.fa"
2023-07-05 13:46:16.234640: Running the command: "cactus_analyseAssembly HG02630.2.sanitized.fa"
2023-07-05 13:46:16.236336: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/2316/edf1/tmpyaotne9k/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p"
2023-07-05 13:46:16.241558: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/14ec/d32a/tmpi5_rqduh/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p'" in 0.8468 seconds and 153.9 Mi memory
2023-07-05 13:46:16.245364: Running the command: "cactus_analyseAssembly HG01106.2.sanitized.fa"
2023-07-05 13:46:16.253362: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/f0b5/fa61/tmpdl0uos0s/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p'" in 0.858 seconds and 71.5 Mi memory
2023-07-05 13:46:16.258319: Running the command: "cactus_analyseAssembly HG02630.2.sanitized.fa"
Got message from job at time 07-05-2023 13:46:16: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 3 Total-length: 77919015 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27314095 Median-sequence-length: 27314095 Max-sequence-length: 33314749 Min-sequence-length: 17290171

2023-07-05 13:46:16.281100: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/27bafead6d355b998e86173ec3f6a1a4/22f0/f8f5/tmpwc7njeki/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p'" in 0.8765 seconds and 66.4 Mi memory
2023-07-05 13:46:16.285184: Running the command: "cactus_analyseAssembly NA18906.2.sanitized.fa"
2023-07-05 13:46:16.301001: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/cace/7f69/tmpoqv9aqcu/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p'" in 1.2879 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:46:16: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 3 Total-length: 76088984 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 55318886 Median-sequence-length: 16458753 Max-sequence-length: 55318886 Min-sequence-length: 4311345

2023-07-05 13:46:16.307801: Running the command: "cactus_analyseAssembly HG01106.1.sanitized.fa"
2023-07-05 13:46:16.657718: Successfully ran: "cactus_analyseAssembly HG00741.2.sanitized.fa" in 0.5329 seconds and 52.9 Mi memory
2023-07-05 13:46:16.674316: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/b887/8fe7/tmp67o2tv8z/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p"
2023-07-05 13:46:16.677104: Successfully ran: "cactus_analyseAssembly HG03579.1.sanitized.fa" in 0.5333 seconds and 51.9 Mi memory
2023-07-05 13:46:16.681452: Successfully ran: "cactus_analyseAssembly HG01123.2.sanitized.fa" in 0.5331 seconds and 51.9 Mi memory
2023-07-05 13:46:16.714199: Successfully ran: "cactus_analyseAssembly HG01952.1.sanitized.fa" in 0.5466 seconds and 55.5 Mi memory
2023-07-05 13:46:16.714667: Successfully ran: "cactus_analyseAssembly HG02148.1.sanitized.fa" in 0.5487 seconds and 53.4 Mi memory
2023-07-05 13:46:16.716581: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 0.5458 seconds and 53.7 Mi memory
2023-07-05 13:46:16.717051: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 0.5513 seconds and 51.9 Mi memory
2023-07-05 13:46:16.723250: Successfully ran: "cactus_analyseAssembly NA21309.2.sanitized.fa" in 0.5461 seconds and 51.9 Mi memory
2023-07-05 13:46:16.726320: Successfully ran: "cactus_analyseAssembly NA21309.1.sanitized.fa" in 0.5451 seconds and 51.9 Mi memory
2023-07-05 13:46:16.729466: Successfully ran: "cactus_analyseAssembly HG02055.2.sanitized.fa" in 0.5493 seconds and 70.7 Mi memory
2023-07-05 13:46:16.734587: Successfully ran: "cactus_analyseAssembly HG02818.1.sanitized.fa" in 0.5391 seconds and 51.9 Mi memory
2023-07-05 13:46:16.736860: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 0.5449 seconds and 51.9 Mi memory
2023-07-05 13:46:16.739201: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 0.5478 seconds and 51.9 Mi memory
2023-07-05 13:46:16.744732: Successfully ran: "cactus_analyseAssembly HG02486.1.sanitized.fa" in 0.5548 seconds and 56.8 Mi memory
2023-07-05 13:46:16.747371: Successfully ran: "cactus_analyseAssembly HG01928.1.sanitized.fa" in 0.5513 seconds and 53.9 Mi memory
2023-07-05 13:46:16.765406: Successfully ran: "cactus_analyseAssembly HG01243.1.sanitized.fa" in 0.5628 seconds and 58.0 Mi memory
2023-07-05 13:46:16.765891: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 0.5573 seconds and 51.9 Mi memory
2023-07-05 13:46:16.785870: Successfully ran: "cactus_analyseAssembly HG02559.2.sanitized.fa" in 0.57 seconds and 59.1 Mi memory
2023-07-05 13:46:16.798741: Successfully ran: "cactus_analyseAssembly HG01243.2.sanitized.fa" in 0.5655 seconds and 51.9 Mi memory
2023-07-05 13:46:16.802960: Successfully ran: "cactus_analyseAssembly HG01361.1.sanitized.fa" in 0.5758 seconds and 60.1 Mi memory
2023-07-05 13:46:16.806564: Successfully ran: "cactus_analyseAssembly HG02622.1.sanitized.fa" in 0.5975 seconds and 153.9 Mi memory
2023-07-05 13:46:16.840599: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 0.5814 seconds and 71.4 Mi memory
2023-07-05 13:46:16.848803: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 0.6026 seconds and 153.9 Mi memory
2023-07-05 13:46:16.903243: Successfully ran: "cactus_analyseAssembly NA18906.2.sanitized.fa" in 0.6172 seconds and 66.3 Mi memory
2023-07-05 13:46:16.925882: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 0.6904 seconds and 51.9 Mi memory
2023-07-05 13:46:17.009093: Successfully ran: "cactus_analyseAssembly HG01106.1.sanitized.fa" in 0.7003 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:46:18: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 4 Total-length: 79733448 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18194482 Median-sequence-length: 18194482 Max-sequence-length: 33383566 Min-sequence-length: 11641901

2023-07-05 13:46:18.028715: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/2316/edf1/tmpyaotne9k/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p'" in 1.7911 seconds and 58.9 Mi memory
2023-07-05 13:46:18.037192: Running the command: "cactus_analyseAssembly HG02717.2.sanitized.fa"
Got message from job at time 07-05-2023 13:46:18: Assembly stats for HG03540.1: Input-sample: HG03540.1.sanitized.fa Total-sequences: 6 Total-length: 75212797 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18792190 Median-sequence-length: 15686747 Max-sequence-length: 21608285 Min-sequence-length: 2822459

Got message from job at time 07-05-2023 13:46:18: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 13 Total-length: 76310163 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12122383 Median-sequence-length: 3982215 Max-sequence-length: 16030710 Min-sequence-length: 623704

Got message from job at time 07-05-2023 13:46:18: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 8 Total-length: 80620133 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19011661 Median-sequence-length: 12085366 Max-sequence-length: 23855753 Min-sequence-length: 23025

2023-07-05 13:46:18.273346: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/3373/a71a/tmptuyyxxju/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p"
2023-07-05 13:46:18.456337: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/b887/8fe7/tmp67o2tv8z/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p'" in 1.7807 seconds and 51.9 Mi memory
2023-07-05 13:46:18.463401: Running the command: "cactus_analyseAssembly HG03540.2.sanitized.fa"
Got message from job at time 07-05-2023 13:46:18: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 8 Total-length: 76990330 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14717876 Median-sequence-length: 11337565 Max-sequence-length: 26832628 Min-sequence-length: 2312275

2023-07-05 13:46:18.516029: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/6c29/4135/tmp3sdv2jad/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p"
2023-07-05 13:46:18.516104: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/2df5/9086/tmpatfgf5d6/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p"
Got message from job at time 07-05-2023 13:46:18: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 7 Total-length: 191651045 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 63854208 Median-sequence-length: 7817480 Max-sequence-length: 92947423 Min-sequence-length: 62532

Got message from job at time 07-05-2023 13:46:18: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 11 Total-length: 160830213 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43218440 Median-sequence-length: 9171988 Max-sequence-length: 44484353 Min-sequence-length: 91176

Got message from job at time 07-05-2023 13:46:18: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 6 Total-length: 190997700 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52807152 Median-sequence-length: 41058332 Max-sequence-length: 80434850 Min-sequence-length: 1957812

Got message from job at time 07-05-2023 13:46:18: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 9 Total-length: 192436632 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52942184 Median-sequence-length: 12665523 Max-sequence-length: 80495949 Min-sequence-length: 45523

Got message from job at time 07-05-2023 13:46:18: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 6 Total-length: 158716102 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 53908853 Median-sequence-length: 41596158 Max-sequence-length: 56579535 Min-sequence-length: 743337

Got message from job at time 07-05-2023 13:46:18: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 7 Total-length: 159953647 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 93550816 Median-sequence-length: 2266770 Max-sequence-length: 93550816 Min-sequence-length: 189585

Got message from job at time 07-05-2023 13:46:19: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 6 Total-length: 160188881 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 45084190 Median-sequence-length: 44264113 Max-sequence-length: 53828272 Min-sequence-length: 767792

Got message from job at time 07-05-2023 13:46:19: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 7 Total-length: 76416439 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15874815 Median-sequence-length: 12107485 Max-sequence-length: 23907584 Min-sequence-length: 2634413

Got message from job at time 07-05-2023 13:46:19: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 5 Total-length: 159064987 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54677621 Median-sequence-length: 44154830 Max-sequence-length: 56388306 Min-sequence-length: 210153

Got message from job at time 07-05-2023 13:46:19: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 8 Total-length: 164159215 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 57921587 Median-sequence-length: 10286240 Max-sequence-length: 61773609 Min-sequence-length: 26250

Got message from job at time 07-05-2023 13:46:19: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 14 Total-length: 160215147 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30058838 Median-sequence-length: 9131975 Max-sequence-length: 43062908 Min-sequence-length: 24949

Got message from job at time 07-05-2023 13:46:19: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 5 Total-length: 190650297 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 58165746 Median-sequence-length: 34899826 Max-sequence-length: 79891182 Min-sequence-length: 1970044

Got message from job at time 07-05-2023 13:46:19: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 5 Total-length: 79683134 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 34 N50: 40331972 Median-sequence-length: 12098767 Max-sequence-length: 40331972 Min-sequence-length: 2814114

2023-07-05 13:46:19.410374: Successfully ran: "cactus_analyseAssembly HG02717.2.sanitized.fa" in 1.3723 seconds and 58.8 Mi memory
Got message from job at time 07-05-2023 13:46:19: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 7 Total-length: 160599065 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 46698379 Median-sequence-length: 16057777 Max-sequence-length: 56365299 Min-sequence-length: 27457

Got message from job at time 07-05-2023 13:46:19: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 8 Total-length: 160192283 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 47178056 Median-sequence-length: 10693800 Max-sequence-length: 55636718 Min-sequence-length: 21557

2023-07-05 13:46:19.815253: Successfully ran: "cactus_analyseAssembly HG03540.2.sanitized.fa" in 1.351 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:46:20: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 4 Total-length: 158182131 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 87790390 Median-sequence-length: 60487953 Max-sequence-length: 87790390 Min-sequence-length: 775550

Got message from job at time 07-05-2023 13:46:20: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 10 Total-length: 161364178 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 85865153 Median-sequence-length: 3311055 Max-sequence-length: 85865153 Min-sequence-length: 238198

2023-07-05 13:46:20.151508: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/3373/a71a/tmptuyyxxju/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p'" in 1.8768 seconds and 154.0 Mi memory
2023-07-05 13:46:20.158855: Running the command: "cactus_analyseAssembly HG01928.1.sanitized.fa"
2023-07-05 13:46:20.315614: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/6c29/4135/tmp3sdv2jad/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p'" in 1.7984 seconds and 51.9 Mi memory
2023-07-05 13:46:20.323191: Running the command: "cactus_analyseAssembly HG01243.1.sanitized.fa"
2023-07-05 13:46:20.339415: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/2df5/9086/tmpatfgf5d6/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p'" in 1.822 seconds and 154.0 Mi memory
2023-07-05 13:46:20.347604: Running the command: "cactus_analyseAssembly HG02559.1.sanitized.fa"
Got message from job at time 07-05-2023 13:46:20: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 8 Total-length: 157747662 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 94054693 Median-sequence-length: 3374099 Max-sequence-length: 94054693 Min-sequence-length: 214303

Got message from job at time 07-05-2023 13:46:20: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 9 Total-length: 160326107 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52923338 Median-sequence-length: 4332340 Max-sequence-length: 55544740 Min-sequence-length: 69924

Got message from job at time 07-05-2023 13:46:20: Assembly stats for NA18906.1: Input-sample: NA18906.1.sanitized.fa Total-sequences: 13 Total-length: 192927766 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25882740 Median-sequence-length: 9404922 Max-sequence-length: 48714365 Min-sequence-length: 27602

Got message from job at time 07-05-2023 13:46:20: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 10 Total-length: 157906589 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22409537 Median-sequence-length: 17294513 Max-sequence-length: 35801671 Min-sequence-length: 1019529

Got message from job at time 07-05-2023 13:46:20: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 14 Total-length: 158925287 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 30750493 Median-sequence-length: 1724914 Max-sequence-length: 73789501 Min-sequence-length: 32415

Got message from job at time 07-05-2023 13:46:20: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 18 Total-length: 161713682 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 29275100 Median-sequence-length: 5787337 Max-sequence-length: 35992937 Min-sequence-length: 26606

Got message from job at time 07-05-2023 13:46:20: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 4 Total-length: 83075466 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 48699773 Median-sequence-length: 24900608 Max-sequence-length: 48699773 Min-sequence-length: 217200

Got message from job at time 07-05-2023 13:46:20: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 12 Total-length: 161949221 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 27 N50: 46125841 Median-sequence-length: 5118982 Max-sequence-length: 48583976 Min-sequence-length: 173409

Got message from job at time 07-05-2023 13:46:20: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 8 Total-length: 189524694 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 96216221 Median-sequence-length: 8638290 Max-sequence-length: 96216221 Min-sequence-length: 2063826

Got message from job at time 07-05-2023 13:46:20: Assembly stats for HG03453.1: Input-sample: HG03453.1.sanitized.fa Total-sequences: 18 Total-length: 192612698 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15568576 Median-sequence-length: 7104349 Max-sequence-length: 58121369 Min-sequence-length: 999127

Got message from job at time 07-05-2023 13:46:20: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 7 Total-length: 159724135 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52769472 Median-sequence-length: 2524596 Max-sequence-length: 73803074 Min-sequence-length: 747138

Got message from job at time 07-05-2023 13:46:20: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 8 Total-length: 160960921 Proportion-repeat-masked: 0.000001 ProportionNs: 0.000001 Total-Ns: 112 N50: 52899093 Median-sequence-length: 6163128 Max-sequence-length: 55282140 Min-sequence-length: 772652

Got message from job at time 07-05-2023 13:46:20: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 9 Total-length: 76630052 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12545563 Median-sequence-length: 7772725 Max-sequence-length: 16357037 Min-sequence-length: 894312

Got message from job at time 07-05-2023 13:46:20: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 8 Total-length: 159213526 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 94439457 Median-sequence-length: 1263147 Max-sequence-length: 94439457 Min-sequence-length: 20003

Got message from job at time 07-05-2023 13:46:20: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 8 Total-length: 160782095 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 83971154 Median-sequence-length: 6450390 Max-sequence-length: 83971154 Min-sequence-length: 132658

Got message from job at time 07-05-2023 13:46:20: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 10 Total-length: 75827325 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16161893 Median-sequence-length: 4348054 Max-sequence-length: 22783159 Min-sequence-length: 51032

Got message from job at time 07-05-2023 13:46:20: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 10 Total-length: 160860651 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44661619 Median-sequence-length: 5303429 Max-sequence-length: 54915365 Min-sequence-length: 180213

Got message from job at time 07-05-2023 13:46:20: Assembly stats for NA20129.1: Input-sample: NA20129.1.sanitized.fa Total-sequences: 10 Total-length: 160594806 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28837087 Median-sequence-length: 17501040 Max-sequence-length: 35926761 Min-sequence-length: 1072489

Got message from job at time 07-05-2023 13:46:20: Assembly stats for HG03540.1: Input-sample: HG03540.1.sanitized.fa Total-sequences: 7 Total-length: 160417391 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 54505167 Median-sequence-length: 14236288 Max-sequence-length: 55363342 Min-sequence-length: 195453

Got message from job at time 07-05-2023 13:46:20: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 17 Total-length: 161436536 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 19770268 Median-sequence-length: 6212996 Max-sequence-length: 42978746 Min-sequence-length: 30616

Got message from job at time 07-05-2023 13:46:20: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 12 Total-length: 161064850 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 29866969 Median-sequence-length: 206989 Max-sequence-length: 75034003 Min-sequence-length: 21145

Got message from job at time 07-05-2023 13:46:20: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 11 Total-length: 156510802 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 37755036 Median-sequence-length: 7972583 Max-sequence-length: 45271688 Min-sequence-length: 1014833

2023-07-05 13:46:21.004394: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/ba6b/9527/tmpk4uui2h1/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 7 Total-length: 160291181 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 54551699 Median-sequence-length: 5766732 Max-sequence-length: 55385015 Min-sequence-length: 56868

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 10 Total-length: 159243739 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 33359929 Median-sequence-length: 12425758 Max-sequence-length: 57684709 Min-sequence-length: 1018695

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 10 Total-length: 158950257 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35989960 Median-sequence-length: 15681071 Max-sequence-length: 43536212 Min-sequence-length: 212081

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 10 Total-length: 160802669 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29383297 Median-sequence-length: 26265295 Max-sequence-length: 36807278 Min-sequence-length: 43992

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 10 Total-length: 161032412 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 45395624 Median-sequence-length: 7987194 Max-sequence-length: 56413652 Min-sequence-length: 24715

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 12 Total-length: 160575292 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44243737 Median-sequence-length: 5354085 Max-sequence-length: 45068306 Min-sequence-length: 33971

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 4 Total-length: 160566701 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 98243365 Median-sequence-length: 61111426 Max-sequence-length: 98243365 Min-sequence-length: 199906

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 11 Total-length: 160915847 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 87304453 Median-sequence-length: 1770345 Max-sequence-length: 87304453 Min-sequence-length: 17704

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 13 Total-length: 160330996 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27746797 Median-sequence-length: 4150982 Max-sequence-length: 45068258 Min-sequence-length: 67735

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 12 Total-length: 159983885 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43584396 Median-sequence-length: 5181877 Max-sequence-length: 55312059 Min-sequence-length: 30022

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 10 Total-length: 159428945 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 53717995 Median-sequence-length: 1168572 Max-sequence-length: 55611293 Min-sequence-length: 33069

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 14 Total-length: 156282990 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 38064786 Median-sequence-length: 1905104 Max-sequence-length: 46067867 Min-sequence-length: 38223

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 17 Total-length: 190835436 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20496401 Median-sequence-length: 7369753 Max-sequence-length: 58956578 Min-sequence-length: 38570

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 7 Total-length: 161204645 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 48111558 Median-sequence-length: 12312079 Max-sequence-length: 57096483 Min-sequence-length: 517334

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 9 Total-length: 160345349 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 88226035 Median-sequence-length: 2828422 Max-sequence-length: 88226035 Min-sequence-length: 187152

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 5 Total-length: 162186530 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 98710541 Median-sequence-length: 4550467 Max-sequence-length: 98710541 Min-sequence-length: 1029010

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 10 Total-length: 160393669 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 27 N50: 39450990 Median-sequence-length: 10285529 Max-sequence-length: 45032528 Min-sequence-length: 1016399

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 9 Total-length: 159602069 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 41438245 Median-sequence-length: 8461824 Max-sequence-length: 55360275 Min-sequence-length: 60025

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 10 Total-length: 192102518 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20163946 Median-sequence-length: 18938265 Max-sequence-length: 60325467 Min-sequence-length: 59103

Got message from job at time 07-05-2023 13:46:21: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 160567428 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 160567428 Median-sequence-length: 160567428 Max-sequence-length: 160567428 Min-sequence-length: 160567428

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 10 Total-length: 189386239 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36722666 Median-sequence-length: 12750016 Max-sequence-length: 85886744 Min-sequence-length: 42264

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 16 Total-length: 162124018 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 60429349 Median-sequence-length: 765700 Max-sequence-length: 63729273 Min-sequence-length: 23715

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 12 Total-length: 159818725 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27706432 Median-sequence-length: 10760977 Max-sequence-length: 42368292 Min-sequence-length: 32749

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 10 Total-length: 158190862 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 86579479 Median-sequence-length: 1562366 Max-sequence-length: 86579479 Min-sequence-length: 79903

Got message from job at time 07-05-2023 13:46:21: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 24419 Total-length: 167863660 Proportion-repeat-masked: 0.002239 ProportionNs: 0.002239 Total-Ns: 375838 N50: 73777 Median-sequence-length: 98 Max-sequence-length: 2793157 Min-sequence-length: 1

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 15 Total-length: 157145040 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 27 N50: 37027691 Median-sequence-length: 3816034 Max-sequence-length: 41591481 Min-sequence-length: 21459

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 5 Total-length: 162647989 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 87792325 Median-sequence-length: 13060655 Max-sequence-length: 87792325 Min-sequence-length: 806994

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 5 Total-length: 83845402 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 71978438 Median-sequence-length: 185034 Max-sequence-length: 71978438 Min-sequence-length: 138478

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 6 Total-length: 161971599 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 57962162 Median-sequence-length: 14780702 Max-sequence-length: 73156074 Min-sequence-length: 1019475

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG01071.1: Input-sample: HG01071.1.sanitized.fa Total-sequences: 17 Total-length: 161778718 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 105434694 Median-sequence-length: 241573 Max-sequence-length: 105434694 Min-sequence-length: 22629

2023-07-05 13:46:21.568584: Successfully ran: "cactus_analyseAssembly HG01928.1.sanitized.fa" in 1.4088 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 8 Total-length: 159994678 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 55545114 Median-sequence-length: 10001623 Max-sequence-length: 60525527 Min-sequence-length: 1001902

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 6 Total-length: 82579321 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52371400 Median-sequence-length: 9959153 Max-sequence-length: 52371400 Min-sequence-length: 90264

Got message from job at time 07-05-2023 13:46:21: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 20 Total-length: 189223874 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16886360 Median-sequence-length: 4043230 Max-sequence-length: 43534379 Min-sequence-length: 34918

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 17 Total-length: 191736232 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22454344 Median-sequence-length: 7916456 Max-sequence-length: 50398935 Min-sequence-length: 30925

2023-07-05 13:46:21.635385: Successfully ran: "cactus_analyseAssembly HG01243.1.sanitized.fa" in 1.3114 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 9 Total-length: 85858914 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43146214 Median-sequence-length: 3134462 Max-sequence-length: 43146214 Min-sequence-length: 89004

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG00741.1: Input-sample: HG00741.1.sanitized.fa Total-sequences: 10 Total-length: 161458751 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 93611946 Median-sequence-length: 1590445 Max-sequence-length: 93611946 Min-sequence-length: 256578

Got message from job at time 07-05-2023 13:46:21: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 14 Total-length: 159705230 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 86386188 Median-sequence-length: 806461 Max-sequence-length: 86386188 Min-sequence-length: 16540

2023-07-05 13:46:21.707727: Successfully ran: "cactus_analyseAssembly HG02559.1.sanitized.fa" in 1.3593 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:46:22: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 7 Total-length: 159140596 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 48061544 Median-sequence-length: 7661901 Max-sequence-length: 55343778 Min-sequence-length: 187584

2023-07-05 13:46:22.120564: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/0eea/493c/tmpqvddh42k/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p"
Got message from job at time 07-05-2023 13:46:22: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 8 Total-length: 191896376 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 125899356 Median-sequence-length: 12746946 Max-sequence-length: 125899356 Min-sequence-length: 68555

Got message from job at time 07-05-2023 13:46:22: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 5 Total-length: 87511901 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 62623039 Median-sequence-length: 5517541 Max-sequence-length: 62623039 Min-sequence-length: 1417840

Got message from job at time 07-05-2023 13:46:22: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 10 Total-length: 81700978 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12468338 Median-sequence-length: 8770206 Max-sequence-length: 16994216 Min-sequence-length: 1038052

2023-07-05 13:46:22.775634: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/ba6b/9527/tmpk4uui2h1/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p'" in 1.7699 seconds and 75.8 Mi memory
Got message from job at time 07-05-2023 13:46:22: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 9 Total-length: 80662942 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24857558 Median-sequence-length: 3314414 Max-sequence-length: 28119495 Min-sequence-length: 51024

2023-07-05 13:46:22.783647: Running the command: "cactus_analyseAssembly HG02109.2.sanitized.fa"
Got message from job at time 07-05-2023 13:46:22: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 8 Total-length: 85319994 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52018938 Median-sequence-length: 4541534 Max-sequence-length: 52018938 Min-sequence-length: 48325

Got message from job at time 07-05-2023 13:46:22: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 4 Total-length: 76745498 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40348295 Median-sequence-length: 16207990 Max-sequence-length: 40348295 Min-sequence-length: 8111834

Got message from job at time 07-05-2023 13:46:22: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 3 Total-length: 84258312 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 59886928 Median-sequence-length: 24318131 Max-sequence-length: 59886928 Min-sequence-length: 53253

Got message from job at time 07-05-2023 13:46:22: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 5 Total-length: 83386125 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 55253358 Median-sequence-length: 6013835 Max-sequence-length: 55253358 Min-sequence-length: 22138

Got message from job at time 07-05-2023 13:46:22: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 5 Total-length: 83985672 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 59082208 Median-sequence-length: 7202157 Max-sequence-length: 59082208 Min-sequence-length: 106673

Got message from job at time 07-05-2023 13:46:22: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 2 Total-length: 83053482 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 58211159 Median-sequence-length: 58211159 Max-sequence-length: 58211159 Min-sequence-length: 24842323

Got message from job at time 07-05-2023 13:46:23: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 2 Total-length: 83559403 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 58691565 Median-sequence-length: 58691565 Max-sequence-length: 58691565 Min-sequence-length: 24867838

Got message from job at time 07-05-2023 13:46:23: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 12 Total-length: 84964254 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44647564 Median-sequence-length: 751588 Max-sequence-length: 44647564 Min-sequence-length: 13339

Got message from job at time 07-05-2023 13:46:23: Assembly stats for NA18906.1: Input-sample: NA18906.1.sanitized.fa Total-sequences: 4 Total-length: 80407641 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54476673 Median-sequence-length: 24916282 Max-sequence-length: 54476673 Min-sequence-length: 25902

Got message from job at time 07-05-2023 13:46:23: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 4 Total-length: 80713296 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52331281 Median-sequence-length: 16111071 Max-sequence-length: 52331281 Min-sequence-length: 3520107

Got message from job at time 07-05-2023 13:46:23: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 1 Total-length: 82766058 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 82766058 Median-sequence-length: 82766058 Max-sequence-length: 82766058 Min-sequence-length: 82766058

Got message from job at time 07-05-2023 13:46:23: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 6 Total-length: 78736635 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 34 N50: 50749548 Median-sequence-length: 5540570 Max-sequence-length: 50749548 Min-sequence-length: 92873

Got message from job at time 07-05-2023 13:46:23: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 6 Total-length: 78998570 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40791126 Median-sequence-length: 11501199 Max-sequence-length: 40791126 Min-sequence-length: 21970

Got message from job at time 07-05-2023 13:46:23: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 27 Total-length: 81511791 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12202689 Median-sequence-length: 512391 Max-sequence-length: 16436123 Min-sequence-length: 19952

Got message from job at time 07-05-2023 13:46:23: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 5 Total-length: 78873529 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17647422 Median-sequence-length: 17437852 Max-sequence-length: 21952819 Min-sequence-length: 5887789

Got message from job at time 07-05-2023 13:46:23: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 8 Total-length: 79464210 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16479086 Median-sequence-length: 12096297 Max-sequence-length: 17597331 Min-sequence-length: 1598805

Got message from job at time 07-05-2023 13:46:23: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 5 Total-length: 84261665 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 59283497 Median-sequence-length: 7628407 Max-sequence-length: 59283497 Min-sequence-length: 26848

Got message from job at time 07-05-2023 13:46:23: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 10 Total-length: 75507122 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 11420710 Median-sequence-length: 9176615 Max-sequence-length: 19055730 Min-sequence-length: 26047

Got message from job at time 07-05-2023 13:46:23: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 5 Total-length: 77295610 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40391303 Median-sequence-length: 12093821 Max-sequence-length: 40391303 Min-sequence-length: 2818462

Got message from job at time 07-05-2023 13:46:23: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 5 Total-length: 77779672 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19135489 Median-sequence-length: 16398525 Max-sequence-length: 33333053 Min-sequence-length: 2773724

Got message from job at time 07-05-2023 13:46:23: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 4 Total-length: 83745130 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 55097324 Median-sequence-length: 24964270 Max-sequence-length: 55097324 Min-sequence-length: 60718

Got message from job at time 07-05-2023 13:46:23: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 3 Total-length: 83744071 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 83572750 Median-sequence-length: 100939 Max-sequence-length: 83572750 Min-sequence-length: 70382

Got message from job at time 07-05-2023 13:46:23: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 1 Total-length: 82075594 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 82075594 Median-sequence-length: 82075594 Max-sequence-length: 82075594 Min-sequence-length: 82075594

Got message from job at time 07-05-2023 13:46:23: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 3 Total-length: 84503833 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 59419862 Median-sequence-length: 24977644 Max-sequence-length: 59419862 Min-sequence-length: 106327

Got message from job at time 07-05-2023 13:46:23: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 5 Total-length: 79945109 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51857951 Median-sequence-length: 9980257 Max-sequence-length: 51857951 Min-sequence-length: 139555

Got message from job at time 07-05-2023 13:46:23: Assembly stats for HG00735.1: Input-sample: HG00735.1.sanitized.fa Total-sequences: 5 Total-length: 82367961 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 55142853 Median-sequence-length: 2247149 Max-sequence-length: 55142853 Min-sequence-length: 31567

Got message from job at time 07-05-2023 13:46:23: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 7 Total-length: 75669049 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15940400 Median-sequence-length: 7305512 Max-sequence-length: 35253792 Min-sequence-length: 34647

Got message from job at time 07-05-2023 13:46:23: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 4 Total-length: 90750244 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 48732728 Median-sequence-length: 24384127 Max-sequence-length: 48732728 Min-sequence-length: 375647

Got message from job at time 07-05-2023 13:46:23: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 1 Total-length: 78805536 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 78805536 Median-sequence-length: 78805536 Max-sequence-length: 78805536 Min-sequence-length: 78805536

Got message from job at time 07-05-2023 13:46:23: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 8 Total-length: 77103579 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16473249 Median-sequence-length: 12085850 Max-sequence-length: 18838109 Min-sequence-length: 20778

Got message from job at time 07-05-2023 13:46:23: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 3 Total-length: 77640265 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28141884 Median-sequence-length: 28141884 Max-sequence-length: 33414897 Min-sequence-length: 16083484

2023-07-05 13:46:23.896941: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/0eea/493c/tmpqvddh42k/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p'" in 1.7751 seconds and 57.6 Mi memory
2023-07-05 13:46:23.904683: Running the command: "cactus_analyseAssembly HG01175.1.sanitized.fa"
2023-07-05 13:46:24.151461: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 1.367 seconds and 75.8 Mi memory
Got message from job at time 07-05-2023 13:46:24: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 7 Total-length: 86154811 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22624180 Median-sequence-length: 10363275 Max-sequence-length: 27556785 Min-sequence-length: 48582

Got message from job at time 07-05-2023 13:46:25: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 3 Total-length: 171836146 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 111711137 Median-sequence-length: 40483040 Max-sequence-length: 111711137 Min-sequence-length: 19641969

Got message from job at time 07-05-2023 13:46:25: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 3 Total-length: 171078455 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 102298096 Median-sequence-length: 60041455 Max-sequence-length: 102298096 Min-sequence-length: 8738904

Got message from job at time 07-05-2023 13:46:25: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 6 Total-length: 171866730 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 88963347 Median-sequence-length: 22128789 Max-sequence-length: 88963347 Min-sequence-length: 5490465

Got message from job at time 07-05-2023 13:46:25: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 80542538 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 80542538 Median-sequence-length: 80542538 Max-sequence-length: 80542538 Min-sequence-length: 80542538

Got message from job at time 07-05-2023 13:46:25: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 16 Total-length: 175685501 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41947926 Median-sequence-length: 5720605 Max-sequence-length: 58067654 Min-sequence-length: 183521

Got message from job at time 07-05-2023 13:46:25: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 4 Total-length: 79951827 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 21946526 Median-sequence-length: 21946526 Max-sequence-length: 33355484 Min-sequence-length: 6211337

2023-07-05 13:46:25.294483: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 1.389 seconds and 57.5 Mi memory
Got message from job at time 07-05-2023 13:46:25: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 11 Total-length: 169407702 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26400532 Median-sequence-length: 12693759 Max-sequence-length: 35175993 Min-sequence-length: 2034606

Got message from job at time 07-05-2023 13:46:25: Assembly stats for HG00741.1: Input-sample: HG00741.1.sanitized.fa Total-sequences: 4 Total-length: 78848819 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52497247 Median-sequence-length: 17563137 Max-sequence-length: 52497247 Min-sequence-length: 2802785

Got message from job at time 07-05-2023 13:46:25: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 5 Total-length: 171771359 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 111233419 Median-sequence-length: 19679491 Max-sequence-length: 111233419 Min-sequence-length: 32015

Got message from job at time 07-05-2023 13:46:25: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 7 Total-length: 171425746 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 95812828 Median-sequence-length: 10448779 Max-sequence-length: 95812828 Min-sequence-length: 225519

Got message from job at time 07-05-2023 13:46:25: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 8 Total-length: 89838726 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52518527 Median-sequence-length: 7069766 Max-sequence-length: 52518527 Min-sequence-length: 111549

Got message from job at time 07-05-2023 13:46:25: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 6 Total-length: 77959507 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17554158 Median-sequence-length: 12080690 Max-sequence-length: 37878881 Min-sequence-length: 18727

Got message from job at time 07-05-2023 13:46:25: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 16 Total-length: 170488024 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26774610 Median-sequence-length: 5546504 Max-sequence-length: 37301397 Min-sequence-length: 226597

Got message from job at time 07-05-2023 13:46:25: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 13 Total-length: 170788486 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27199666 Median-sequence-length: 8114498 Max-sequence-length: 34625269 Min-sequence-length: 228335

Got message from job at time 07-05-2023 13:46:25: Assembly stats for HG01071.1: Input-sample: HG01071.1.sanitized.fa Total-sequences: 6 Total-length: 171272638 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 95189268 Median-sequence-length: 18736761 Max-sequence-length: 95189268 Min-sequence-length: 7272928

Got message from job at time 07-05-2023 13:46:25: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 12 Total-length: 170184644 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35249411 Median-sequence-length: 6964150 Max-sequence-length: 56349618 Min-sequence-length: 1881845

Got message from job at time 07-05-2023 13:46:25: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 2 Total-length: 171472044 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 111603336 Median-sequence-length: 111603336 Max-sequence-length: 111603336 Min-sequence-length: 59868708

Got message from job at time 07-05-2023 13:46:25: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 7 Total-length: 79155329 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18200060 Median-sequence-length: 5663515 Max-sequence-length: 35421559 Min-sequence-length: 2314227

Got message from job at time 07-05-2023 13:46:25: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 4 Total-length: 78128376 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 53398385 Median-sequence-length: 18618041 Max-sequence-length: 53398385 Min-sequence-length: 1944649

Got message from job at time 07-05-2023 13:46:26: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 11387 Total-length: 81962302 Proportion-repeat-masked: 0.001631 ProportionNs: 0.001631 Total-Ns: 133680 N50: 83525 Median-sequence-length: 102 Max-sequence-length: 4870706 Min-sequence-length: 1

Got message from job at time 07-05-2023 13:46:26: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 4 Total-length: 79384524 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22019548 Median-sequence-length: 22019548 Max-sequence-length: 33358718 Min-sequence-length: 6054706

Got message from job at time 07-05-2023 13:46:27: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 10 Total-length: 78555229 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12524056 Median-sequence-length: 7920348 Max-sequence-length: 17050327 Min-sequence-length: 891750

Got message from job at time 07-05-2023 13:46:27: Assembly stats for NA18906.1: Input-sample: NA18906.1.sanitized.fa Total-sequences: 5 Total-length: 80789666 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19707647 Median-sequence-length: 12465233 Max-sequence-length: 37985184 Min-sequence-length: 1683663

Got message from job at time 07-05-2023 13:46:27: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 3 Total-length: 80583016 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27699210 Median-sequence-length: 27699210 Max-sequence-length: 33357840 Min-sequence-length: 19525966

Got message from job at time 07-05-2023 13:46:27: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 4 Total-length: 78433575 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 34 N50: 39389124 Median-sequence-length: 17271798 Max-sequence-length: 39389124 Min-sequence-length: 5820580

Got message from job at time 07-05-2023 13:46:27: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 5 Total-length: 77890802 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22629002 Median-sequence-length: 18934561 Max-sequence-length: 30869925 Min-sequence-length: 2635635

Got message from job at time 07-05-2023 13:46:27: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 3 Total-length: 77584088 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 55344198 Median-sequence-length: 18074081 Max-sequence-length: 55344198 Min-sequence-length: 4165809

Got message from job at time 07-05-2023 13:46:27: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 4 Total-length: 78407843 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52506064 Median-sequence-length: 17394233 Max-sequence-length: 52506064 Min-sequence-length: 2812282

Got message from job at time 07-05-2023 13:46:27: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 6 Total-length: 77496273 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15501940 Median-sequence-length: 10041216 Max-sequence-length: 36565270 Min-sequence-length: 2056994

Got message from job at time 07-05-2023 13:46:27: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 9 Total-length: 77539249 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15658402 Median-sequence-length: 6545518 Max-sequence-length: 26738291 Min-sequence-length: 34857

2023-07-05 13:46:28.289559: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfe/e160/tmpukdvtuv7/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p"
2023-07-05 13:46:28.297508: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5785/98cb/tmpdctfh58y/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p"
2023-07-05 13:46:28.298134: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/75b5/ca92/tmpm9j0n5b_/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p"
2023-07-05 13:46:28.298351: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4394/c7b7/tmpv9mgafoo/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p"
2023-07-05 13:46:28.298482: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/0a22/8123/tmprw0gay1j/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p"
2023-07-05 13:46:28.299143: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7916/b41a/tmpk2qxyj7_/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p"
2023-07-05 13:46:28.301543: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1951/347a/tmptsy60at0/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p"
2023-07-05 13:46:28.301718: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/fe51/abee/tmp0d4bkizo/HG00438.1.fa | cactus_sanitizeFastaHeaders - HG00438.1 -p"
2023-07-05 13:46:28.303073: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/afdf/6901/tmp97_r75tq/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:46:28.304801: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/8ee5/c6a9/tmpgdjocyo3/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p"
2023-07-05 13:46:28.308977: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/74b0/d52f/tmpu5rpgkz3/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p"
2023-07-05 13:46:28.310050: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bfa3/56cf/tmp6a6ipn7o/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p"
2023-07-05 13:46:28.311206: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6111/61ee/tmp1b2ams2m/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p"
Got message from job at time 07-05-2023 13:46:28: Assembly stats for HG03453.1: Input-sample: HG03453.1.sanitized.fa Total-sequences: 12 Total-length: 79626905 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12104594 Median-sequence-length: 4495226 Max-sequence-length: 17885838 Min-sequence-length: 35499

Got message from job at time 07-05-2023 13:46:28: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 5 Total-length: 80412502 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19313570 Median-sequence-length: 18891533 Max-sequence-length: 35992166 Min-sequence-length: 34621

Got message from job at time 07-05-2023 13:46:28: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 7 Total-length: 80455383 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17799189 Median-sequence-length: 7307176 Max-sequence-length: 33963506 Min-sequence-length: 2628032

2023-07-05 13:46:29.142195: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/75b5/ca92/tmpm9j0n5b_/NA20129.2.fa | cactus_sanitizeFastaHeaders - NA20129.2 -p'" in 0.8427 seconds and 22.3 Mi memory
2023-07-05 13:46:29.143769: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/4394/c7b7/tmpv9mgafoo/HG02818.2.fa | cactus_sanitizeFastaHeaders - HG02818.2 -p'" in 0.8441 seconds and 23.0 Mi memory
2023-07-05 13:46:29.147359: Running the command: "cactus_analyseAssembly NA20129.2.sanitized.fa"
2023-07-05 13:46:29.148568: Running the command: "cactus_analyseAssembly HG02818.2.sanitized.fa"
2023-07-05 13:46:29.152191: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/bcfe/e160/tmpukdvtuv7/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p'" in 0.8614 seconds and 55.5 Mi memory
2023-07-05 13:46:29.156595: Running the command: "cactus_analyseAssembly HG01106.1.sanitized.fa"
2023-07-05 13:46:29.167006: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/5785/98cb/tmpdctfh58y/HG00673.1.fa | cactus_sanitizeFastaHeaders - HG00673.1 -p'" in 0.8682 seconds and 51.9 Mi memory
2023-07-05 13:46:29.169854: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/7916/b41a/tmpk2qxyj7_/HG01175.1.fa | cactus_sanitizeFastaHeaders - HG01175.1 -p'" in 0.8692 seconds and 51.9 Mi memory
2023-07-05 13:46:29.172133: Running the command: "cactus_analyseAssembly HG00673.1.sanitized.fa"
2023-07-05 13:46:29.175122: Running the command: "cactus_analyseAssembly HG01175.1.sanitized.fa"
2023-07-05 13:46:29.177913: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/0a22/8123/tmprw0gay1j/HG03453.1.fa | cactus_sanitizeFastaHeaders - HG03453.1 -p'" in 0.8783 seconds and 51.9 Mi memory
2023-07-05 13:46:29.182893: Running the command: "cactus_analyseAssembly HG03453.1.sanitized.fa"
2023-07-05 13:46:29.185601: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/1951/347a/tmptsy60at0/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p'" in 0.8828 seconds and 51.9 Mi memory
2023-07-05 13:46:29.190379: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
2023-07-05 13:46:29.234192: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/74b0/d52f/tmpu5rpgkz3/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p'" in 0.9242 seconds and 51.9 Mi memory
2023-07-05 13:46:29.237123: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9eeeec3d467250f1999ba98b3759d207/6111/61ee/tmp1b2ams2m/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p'" in 0.9249 seconds and 54.9 Mi memory
2023-07-05 13:46:29.239043: Running the command: "cactus_analyseAssembly HG02486.1.sanitized.fa"
2023-07-05 13:46:29.241811: Running the command: "cactus_analyseAssembly HG01258.2.sanitized.fa"
Got message from job at time 07-05-2023 13:46:29: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 5 Total-length: 77419512 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 34 N50: 45880046 Median-sequence-length: 12096828 Max-sequence-length: 45880046 Min-sequence-length: 2299511

Got message from job at time 07-05-2023 13:46:29: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 14 Total-length: 78028868 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14563142 Median-sequence-length: 3653605 Max-sequence-length: 17141441 Min-sequence-length: 39495

Got message from job at time 07-05-2023 13:46:29: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 4 Total-length: 79454942 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52496603 Median-sequence-length: 18352374 Max-sequence-length: 52496603 Min-sequence-length: 2819905

Got message from job at time 07-05-2023 13:46:29: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 5 Total-length: 75624554 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 53421413 Median-sequence-length: 4628657 Max-sequence-length: 53421413 Min-sequence-length: 20331

2023-07-05 13:46:29.756175: Successfully ran: "cactus_analyseAssembly NA20129.2.sanitized.fa" in 0.608 seconds and 22.2 Mi memory
2023-07-05 13:46:29.758101: Successfully ran: "cactus_analyseAssembly HG02818.2.sanitized.fa" in 0.6087 seconds and 23.0 Mi memory
Got message from job at time 07-05-2023 13:46:29: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 5 Total-length: 79017829 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 34 N50: 41852034 Median-sequence-length: 10714946 Max-sequence-length: 41852034 Min-sequence-length: 2818605

2023-07-05 13:46:29.792920: Successfully ran: "cactus_analyseAssembly HG01106.1.sanitized.fa" in 0.6356 seconds and 55.5 Mi memory
2023-07-05 13:46:29.802831: Successfully ran: "cactus_analyseAssembly HG01175.1.sanitized.fa" in 0.6269 seconds and 51.9 Mi memory
2023-07-05 13:46:29.803999: Successfully ran: "cactus_analyseAssembly HG00673.1.sanitized.fa" in 0.631 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:46:29: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 6 Total-length: 79851962 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18394764 Median-sequence-length: 12092573 Max-sequence-length: 36607827 Min-sequence-length: 2818191

2023-07-05 13:46:29.814949: Successfully ran: "cactus_analyseAssembly HG03453.1.sanitized.fa" in 0.6312 seconds and 51.9 Mi memory
2023-07-05 13:46:29.838288: Successfully ran: "cactus_analyseAssembly HG03098.2.sanitized.fa" in 0.6472 seconds and 51.9 Mi memory
2023-07-05 13:46:29.838305: Successfully ran: "cactus_analyseAssembly HG02145.1.sanitized.fa" in 0.6419 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:46:29: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 4 Total-length: 78134985 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 50376900 Median-sequence-length: 17640962 Max-sequence-length: 50376900 Min-sequence-length: 2039006

2023-07-05 13:46:29.864923: Successfully ran: "cactus_analyseAssembly HG00438.1.sanitized.fa" in 0.661 seconds and 70.2 Mi memory
2023-07-05 13:46:29.884765: Successfully ran: "cactus_analyseAssembly HG01358.1.sanitized.fa" in 0.6658 seconds and 54.9 Mi memory
2023-07-05 13:46:29.897251: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 0.6693 seconds and 51.9 Mi memory
2023-07-05 13:46:29.916224: Successfully ran: "cactus_analyseAssembly HG02486.1.sanitized.fa" in 0.6764 seconds and 51.9 Mi memory
2023-07-05 13:46:29.919727: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 0.6771 seconds and 54.9 Mi memory
Got message from job at time 07-05-2023 13:46:29: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 51 Total-length: 154714602 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 5902178 Median-sequence-length: 1869013 Max-sequence-length: 20583858 Min-sequence-length: 51551

Got message from job at time 07-05-2023 13:46:30: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 5 Total-length: 82386353 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15858417 Median-sequence-length: 12091126 Max-sequence-length: 40936662 Min-sequence-length: 2293504

Got message from job at time 07-05-2023 13:46:30: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 36 Total-length: 154555724 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 11033064 Median-sequence-length: 2109666 Max-sequence-length: 19264784 Min-sequence-length: 23391

Got message from job at time 07-05-2023 13:46:30: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 41 Total-length: 161961004 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12057374 Median-sequence-length: 1557395 Max-sequence-length: 24016927 Min-sequence-length: 30987

Got message from job at time 07-05-2023 13:46:30: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 50 Total-length: 151053305 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 5440741 Median-sequence-length: 2388126 Max-sequence-length: 9681727 Min-sequence-length: 26519

Got message from job at time 07-05-2023 13:46:30: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 18 Total-length: 154009059 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40089373 Median-sequence-length: 765842 Max-sequence-length: 60694440 Min-sequence-length: 101247

Got message from job at time 07-05-2023 13:46:30: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 40 Total-length: 154065617 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 52 N50: 7849142 Median-sequence-length: 2427326 Max-sequence-length: 17085447 Min-sequence-length: 24990

Got message from job at time 07-05-2023 13:46:30: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 49 Total-length: 151930015 Proportion-repeat-masked: 0.000001 ProportionNs: 0.000001 Total-Ns: 80 N50: 6085420 Median-sequence-length: 1810548 Max-sequence-length: 17085473 Min-sequence-length: 20815

Got message from job at time 07-05-2023 13:46:30: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 16 Total-length: 158396305 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39819246 Median-sequence-length: 5263250 Max-sequence-length: 42826375 Min-sequence-length: 44098

Got message from job at time 07-05-2023 13:46:30: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 4 Total-length: 80424928 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52440137 Median-sequence-length: 18949715 Max-sequence-length: 52440137 Min-sequence-length: 2823280

Got message from job at time 07-05-2023 13:46:30: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 20 Total-length: 153524175 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17547668 Median-sequence-length: 5094607 Max-sequence-length: 29252434 Min-sequence-length: 29012

Got message from job at time 07-05-2023 13:46:30: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 18 Total-length: 154570306 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18226014 Median-sequence-length: 2933775 Max-sequence-length: 42885537 Min-sequence-length: 193642

Got message from job at time 07-05-2023 13:46:30: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 23 Total-length: 153667283 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40396974 Median-sequence-length: 1104915 Max-sequence-length: 42900502 Min-sequence-length: 30066

Got message from job at time 07-05-2023 13:46:30: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 19 Total-length: 152611143 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35036041 Median-sequence-length: 2800791 Max-sequence-length: 41714150 Min-sequence-length: 44877

Got message from job at time 07-05-2023 13:46:30: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 24 Total-length: 153530530 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 11027960 Median-sequence-length: 4218792 Max-sequence-length: 35182712 Min-sequence-length: 202752

Got message from job at time 07-05-2023 13:46:30: Assembly stats for HG03453.1: Input-sample: HG03453.1.sanitized.fa Total-sequences: 35 Total-length: 154251894 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 7694986 Median-sequence-length: 2994552 Max-sequence-length: 21463794 Min-sequence-length: 30599

Got message from job at time 07-05-2023 13:46:30: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 17 Total-length: 154424237 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35183754 Median-sequence-length: 3030938 Max-sequence-length: 50195910 Min-sequence-length: 113800

Got message from job at time 07-05-2023 13:46:30: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 35 Total-length: 154587573 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12982428 Median-sequence-length: 1896796 Max-sequence-length: 18962614 Min-sequence-length: 39057

Got message from job at time 07-05-2023 13:46:30: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 17 Total-length: 153817477 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 21495963 Median-sequence-length: 5512431 Max-sequence-length: 45858800 Min-sequence-length: 194328

Got message from job at time 07-05-2023 13:46:30: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 3 Total-length: 79512373 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 55302156 Median-sequence-length: 18454893 Max-sequence-length: 55302156 Min-sequence-length: 5755324

Got message from job at time 07-05-2023 13:46:30: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 23 Total-length: 152299648 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27709186 Median-sequence-length: 1017878 Max-sequence-length: 40071680 Min-sequence-length: 41940

Got message from job at time 07-05-2023 13:46:30: Assembly stats for HG01071.1: Input-sample: HG01071.1.sanitized.fa Total-sequences: 19 Total-length: 154384337 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43025486 Median-sequence-length: 1646977 Max-sequence-length: 44342560 Min-sequence-length: 42015

Got message from job at time 07-05-2023 13:46:30: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 4 Total-length: 78614805 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42330908 Median-sequence-length: 17046425 Max-sequence-length: 42330908 Min-sequence-length: 6206302

Got message from job at time 07-05-2023 13:46:30: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 20 Total-length: 153611275 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 46891771 Median-sequence-length: 447814 Max-sequence-length: 63974109 Min-sequence-length: 44561

2023-07-05 13:46:30.781512: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/d8b2/5e49/tmpyf__66y_/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-05 13:46:30.785125: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/f24a/e8dc/tmp_gui3m5i/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-05 13:46:30.799048: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/03df/1910/tmp8au0vmok/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p"
2023-07-05 13:46:30.804288: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/aa58/7ee7/tmpptjalzs1/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:46:30.818695: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/cc4a/4dea/tmpe3vacvhg/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:46:30.818800: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/28f0/2ae1/tmp0unu2u9e/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p"
2023-07-05 13:46:30.822970: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/f4de/6b97/tmpfcdhgmue/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p"
2023-07-05 13:46:30.826832: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/7e66/c9fd/tmpjnnzzpbt/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p"
2023-07-05 13:46:30.828510: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/b8b2/18d6/tmpugcj7xfe/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p"
2023-07-05 13:46:30.829279: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/aa3b/57bd/tmpls0j2khi/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
2023-07-05 13:46:30.831311: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/6929/aed9/tmpdvwryvau/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p"
2023-07-05 13:46:30.833108: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/4ba1/e38f/tmp22c8b017/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-05 13:46:30.833916: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/91d8/4f8c/tmpuo5jhfq0/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p"
2023-07-05 13:46:30.834552: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/fdc8/af30/tmpa5uyo9qw/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-05 13:46:30.840959: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/bc61/0613/tmptzkr1_4n/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-05 13:46:30.841147: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/aaba/2855/tmphtrawt9o/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p"
2023-07-05 13:46:30.843025: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/0578/6726/tmpcfsmotui/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
2023-07-05 13:46:30.844650: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/8ccf/d083/tmp2ozje4ub/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p"
2023-07-05 13:46:30.844757: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/a0ba/4ccb/tmpmj_vnpxv/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p"
2023-07-05 13:46:30.846514: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/bdad/378a/tmp3w1g1u2s/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p"
2023-07-05 13:46:30.849116: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/e960/0914/tmpgkuojpqe/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p"
2023-07-05 13:46:30.849244: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/b3fa/5a7e/tmp3qreb59x/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p"
2023-07-05 13:46:30.850628: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/3cb3/4f5d/tmpo0u_3_u3/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p"
2023-07-05 13:46:30.850654: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/d3bd/50ec/tmp54tswoxv/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p"
2023-07-05 13:46:30.852980: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/e4e9/bd10/tmptz_7jns6/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p"
2023-07-05 13:46:30.853044: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/7512/665f/tmpoxrzha7b/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p"
2023-07-05 13:46:30.853359: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/1961/89e8/tmp72yzjctd/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p"
2023-07-05 13:46:30.853543: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/2f6c/b230/tmpdri8blz6/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p"
2023-07-05 13:46:30.854714: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/386c/4cef/tmpj4_gjhbh/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p"
2023-07-05 13:46:30.863432: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/e093/052b/tmp8ama6107/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p"
Got message from job at time 07-05-2023 13:46:31: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 14 Total-length: 154818887 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 83102132 Median-sequence-length: 1649759 Max-sequence-length: 83102132 Min-sequence-length: 25101

Got message from job at time 07-05-2023 13:46:31: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 14 Total-length: 154693233 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41479377 Median-sequence-length: 6554841 Max-sequence-length: 42686126 Min-sequence-length: 317568

Got message from job at time 07-05-2023 13:46:31: Assembly stats for NA18906.1: Input-sample: NA18906.1.sanitized.fa Total-sequences: 21 Total-length: 153117125 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18418017 Median-sequence-length: 2802392 Max-sequence-length: 44912375 Min-sequence-length: 21446

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 37 Total-length: 153398943 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 19 N50: 9117783 Median-sequence-length: 2326314 Max-sequence-length: 19091911 Min-sequence-length: 35502

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 18 Total-length: 155308059 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41719162 Median-sequence-length: 2656101 Max-sequence-length: 42830901 Min-sequence-length: 28540

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 47 Total-length: 154767133 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 7298705 Median-sequence-length: 2192727 Max-sequence-length: 12454131 Min-sequence-length: 32219

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 28 Total-length: 154030196 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 11007568 Median-sequence-length: 2451807 Max-sequence-length: 46003763 Min-sequence-length: 39583

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 32 Total-length: 154667545 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17548590 Median-sequence-length: 2294010 Max-sequence-length: 25191949 Min-sequence-length: 39414

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 37 Total-length: 152518244 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 8660674 Median-sequence-length: 2226532 Max-sequence-length: 19233209 Min-sequence-length: 52255

Got message from job at time 07-05-2023 13:46:32: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 51 Total-length: 154217922 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 6386171 Median-sequence-length: 1970056 Max-sequence-length: 12072727 Min-sequence-length: 44725

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG03540.1: Input-sample: HG03540.1.sanitized.fa Total-sequences: 30 Total-length: 154475531 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17928024 Median-sequence-length: 3473416 Max-sequence-length: 21439485 Min-sequence-length: 126915

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 48 Total-length: 153472228 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 8197025 Median-sequence-length: 1587940 Max-sequence-length: 11013104 Min-sequence-length: 25981

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 23 Total-length: 152947315 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22168864 Median-sequence-length: 2693557 Max-sequence-length: 42745419 Min-sequence-length: 75355

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 68 Total-length: 153450644 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 4093190 Median-sequence-length: 1283406 Max-sequence-length: 21026333 Min-sequence-length: 30484

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 13 Total-length: 154136538 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44351495 Median-sequence-length: 1187618 Max-sequence-length: 61391706 Min-sequence-length: 38562

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 56 Total-length: 154105124 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 6002611 Median-sequence-length: 1492567 Max-sequence-length: 11424481 Min-sequence-length: 22700

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 34 Total-length: 152421838 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15726238 Median-sequence-length: 1370788 Max-sequence-length: 36535860 Min-sequence-length: 37219

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 21 Total-length: 155444455 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40046877 Median-sequence-length: 2227059 Max-sequence-length: 43014953 Min-sequence-length: 53337

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 38 Total-length: 153099154 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 7990601 Median-sequence-length: 2321216 Max-sequence-length: 17556157 Min-sequence-length: 29510

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 17 Total-length: 154501987 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 46000522 Median-sequence-length: 302047 Max-sequence-length: 52381517 Min-sequence-length: 27632

Got message from job at time 07-05-2023 13:46:32: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 156040895 Proportion-repeat-masked: 0.007356 ProportionNs: 0.007356 Total-Ns: 1147861 N50: 156040895 Median-sequence-length: 156040895 Max-sequence-length: 156040895 Min-sequence-length: 156040895

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 21 Total-length: 153025118 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 21442713 Median-sequence-length: 4307078 Max-sequence-length: 36510098 Min-sequence-length: 86057

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 26 Total-length: 154457541 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29405228 Median-sequence-length: 800008 Max-sequence-length: 39187502 Min-sequence-length: 28000

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 46 Total-length: 154177618 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 6055183 Median-sequence-length: 2322701 Max-sequence-length: 18398091 Min-sequence-length: 34138

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 29 Total-length: 154125177 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 11019471 Median-sequence-length: 1929307 Max-sequence-length: 43155781 Min-sequence-length: 20772

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 18 Total-length: 155998471 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40499995 Median-sequence-length: 964035 Max-sequence-length: 48689481 Min-sequence-length: 27870

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 22 Total-length: 153412856 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42841752 Median-sequence-length: 803780 Max-sequence-length: 45990687 Min-sequence-length: 40542

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG00741.1: Input-sample: HG00741.1.sanitized.fa Total-sequences: 29 Total-length: 154635856 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39818197 Median-sequence-length: 1612096 Max-sequence-length: 40372021 Min-sequence-length: 73119

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 36 Total-length: 152861266 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15653965 Median-sequence-length: 1277916 Max-sequence-length: 22143999 Min-sequence-length: 38720

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 36 Total-length: 154764633 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 7068261 Median-sequence-length: 3113003 Max-sequence-length: 17559276 Min-sequence-length: 16613

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 30 Total-length: 155169008 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 21381271 Median-sequence-length: 1531367 Max-sequence-length: 46109172 Min-sequence-length: 17191

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 33 Total-length: 153281457 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 9682358 Median-sequence-length: 2102630 Max-sequence-length: 22559782 Min-sequence-length: 38985

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 17 Total-length: 154094098 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30542371 Median-sequence-length: 2452783 Max-sequence-length: 49616342 Min-sequence-length: 46178

Got message from job at time 07-05-2023 13:46:32: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 154259566 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 154259566 Median-sequence-length: 154259566 Max-sequence-length: 154259566 Min-sequence-length: 154259566

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 28 Total-length: 153571183 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 9742301 Median-sequence-length: 3152775 Max-sequence-length: 19889793 Min-sequence-length: 19715

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 33 Total-length: 153565527 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 11504697 Median-sequence-length: 1641752 Max-sequence-length: 30619166 Min-sequence-length: 20128

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 38 Total-length: 152991178 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 8197085 Median-sequence-length: 3110225 Max-sequence-length: 15432444 Min-sequence-length: 54304

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG00735.1: Input-sample: HG00735.1.sanitized.fa Total-sequences: 21 Total-length: 154432395 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29481275 Median-sequence-length: 1018867 Max-sequence-length: 53422923 Min-sequence-length: 36692

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG02622.1: Input-sample: HG02622.1.sanitized.fa Total-sequences: 14 Total-length: 154286943 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33688099 Median-sequence-length: 6786183 Max-sequence-length: 47117897 Min-sequence-length: 182547

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 19 Total-length: 153275087 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28730737 Median-sequence-length: 1016399 Max-sequence-length: 35958637 Min-sequence-length: 51865

Got message from job at time 07-05-2023 13:46:32: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 21 Total-length: 153652351 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27771457 Median-sequence-length: 1954995 Max-sequence-length: 40078400 Min-sequence-length: 44085

Got message from job at time 07-05-2023 13:46:32: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 16181 Total-length: 159033985 Proportion-repeat-masked: 0.007218 ProportionNs: 0.007218 Total-Ns: 1147861 N50: 107943 Median-sequence-length: 95 Max-sequence-length: 3949908 Min-sequence-length: 1

Got message from job at time 07-05-2023 13:46:32: Assembly stats for NA20129.1: Input-sample: NA20129.1.sanitized.fa Total-sequences: 47 Total-length: 153651649 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 5938217 Median-sequence-length: 2229683 Max-sequence-length: 15081024 Min-sequence-length: 45098

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 32 Total-length: 153783330 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 11010993 Median-sequence-length: 1872555 Max-sequence-length: 28464091 Min-sequence-length: 44892

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 32 Total-length: 154317156 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 8852368 Median-sequence-length: 3118980 Max-sequence-length: 18995599 Min-sequence-length: 53991

Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 14 Total-length: 153472648 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 48015469 Median-sequence-length: 1102539 Max-sequence-length: 48463972 Min-sequence-length: 40125

2023-07-05 13:46:32.760973: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/cc4a/4dea/tmpe3vacvhg/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p'" in 1.941 seconds and 52.9 Mi memory
2023-07-05 13:46:32.766259: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/f4de/6b97/tmpfcdhgmue/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p'" in 1.9418 seconds and 71.3 Mi memory
Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 31 Total-length: 155115935 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 10940349 Median-sequence-length: 2619634 Max-sequence-length: 21774194 Min-sequence-length: 120257

2023-07-05 13:46:32.770228: Running the command: "cactus_analyseAssembly HG01109.1.sanitized.fa"
Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 26 Total-length: 152567705 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16248016 Median-sequence-length: 1402988 Max-sequence-length: 52393269 Min-sequence-length: 55423

2023-07-05 13:46:32.776685: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/7512/665f/tmpoxrzha7b/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p'" in 1.9225 seconds and 51.9 Mi memory
2023-07-05 13:46:32.779111: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/aa3b/57bd/tmpls0j2khi/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p'" in 1.9483 seconds and 58.3 Mi memory
2023-07-05 13:46:32.782332: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/d3bd/50ec/tmp54tswoxv/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 1.9305 seconds and 24.9 Mi memory
2023-07-05 13:46:32.782821: Running the command: "cactus_analyseAssembly HG03098.1.sanitized.fa"
2023-07-05 13:46:32.786096: Running the command: "cactus_analyseAssembly NA21309.2.sanitized.fa"
2023-07-05 13:46:32.790055: Running the command: "cactus_analyseAssembly HG00438.2.sanitized.fa"
2023-07-05 13:46:32.791748: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/28f0/2ae1/tmp0unu2u9e/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p'" in 1.9717 seconds and 77.4 Mi memory
2023-07-05 13:46:32.795902: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/fdc8/af30/tmpa5uyo9qw/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p'" in 1.9603 seconds and 51.9 Mi memory
2023-07-05 13:46:32.798066: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-05 13:46:32.801294: Running the command: "cactus_analyseAssembly HG01978.1.sanitized.fa"
2023-07-05 13:46:32.804923: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/aaba/2855/tmphtrawt9o/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p'" in 1.9627 seconds and 51.9 Mi memory
2023-07-05 13:46:32.805029: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/7e66/c9fd/tmpjnnzzpbt/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p'" in 1.9764 seconds and 51.9 Mi memory
2023-07-05 13:46:32.805739: Running the command: "cactus_analyseAssembly HG01106.2.sanitized.fa"
2023-07-05 13:46:32.807143: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/aa58/7ee7/tmpptjalzs1/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 2.0015 seconds and 182.3 Mi memory
2023-07-05 13:46:32.808149: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/1961/89e8/tmp72yzjctd/HG02145.1.fa | cactus_sanitizeFastaHeaders - HG02145.1 -p'" in 1.9536 seconds and 51.9 Mi memory
2023-07-05 13:46:32.811887: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/f24a/e8dc/tmp_gui3m5i/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p'" in 2.0255 seconds and 154.0 Mi memory
Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 46 Total-length: 150928012 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 7756648 Median-sequence-length: 1974266 Max-sequence-length: 18392434 Min-sequence-length: 22851

2023-07-05 13:46:32.814256: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/bc61/0613/tmptzkr1_4n/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p'" in 1.9722 seconds and 154.0 Mi memory
2023-07-05 13:46:32.815478: Running the command: "cactus_analyseAssembly HG02109.1.sanitized.fa"
2023-07-05 13:46:32.815698: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/e4e9/bd10/tmptz_7jns6/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p'" in 1.9616 seconds and 51.9 Mi memory
2023-07-05 13:46:32.816552: Running the command: "cactus_analyseAssembly HG02886.1.sanitized.fa"
2023-07-05 13:46:32.819425: Running the command: "cactus_analyseAssembly HG02145.1.sanitized.fa"
2023-07-05 13:46:32.821468: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/b8b2/18d6/tmpugcj7xfe/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p'" in 1.9915 seconds and 51.9 Mi memory
2023-07-05 13:46:32.821883: Running the command: "cactus_analyseAssembly HG00733.1.sanitized.fa"
2023-07-05 13:46:32.824425: Running the command: "cactus_analyseAssembly GRCh38.sanitized.fa"
2023-07-05 13:46:32.824804: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/386c/4cef/tmpj4_gjhbh/HG02486.1.fa | cactus_sanitizeFastaHeaders - HG02486.1 -p'" in 1.969 seconds and 154.0 Mi memory
2023-07-05 13:46:32.825671: Running the command: "cactus_analyseAssembly HG03492.1.sanitized.fa"
2023-07-05 13:46:32.825675: Running the command: "cactus_analyseAssembly HG01258.1.sanitized.fa"
2023-07-05 13:46:32.828336: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/a0ba/4ccb/tmpmj_vnpxv/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p'" in 1.9824 seconds and 154.0 Mi memory
2023-07-05 13:46:32.829284: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/2f6c/b230/tmpdri8blz6/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p'" in 1.9744 seconds and 51.9 Mi memory
2023-07-05 13:46:32.831034: Running the command: "cactus_analyseAssembly HG02630.1.sanitized.fa"
Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 26 Total-length: 154424688 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 13325312 Median-sequence-length: 2117944 Max-sequence-length: 39801989 Min-sequence-length: 142778

2023-07-05 13:46:32.834337: Running the command: "cactus_analyseAssembly HG02486.1.sanitized.fa"
2023-07-05 13:46:32.839027: Running the command: "cactus_analyseAssembly HG02080.1.sanitized.fa"
2023-07-05 13:46:32.839399: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/b3fa/5a7e/tmp3qreb59x/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p'" in 1.9888 seconds and 153.9 Mi memory
2023-07-05 13:46:32.840061: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/91d8/4f8c/tmpuo5jhfq0/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p'" in 2.005 seconds and 154.0 Mi memory
2023-07-05 13:46:32.843367: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/0578/6726/tmpcfsmotui/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p'" in 1.9992 seconds and 77.2 Mi memory
2023-07-05 13:46:32.844485: Running the command: "cactus_analyseAssembly HG01358.2.sanitized.fa"
2023-07-05 13:46:32.846504: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/e960/0914/tmpgkuojpqe/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p'" in 1.9963 seconds and 77.1 Mi memory
2023-07-05 13:46:32.846593: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/e093/052b/tmp8ama6107/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p'" in 1.982 seconds and 154.0 Mi memory
2023-07-05 13:46:32.849077: Running the command: "cactus_analyseAssembly HG02622.2.sanitized.fa"
2023-07-05 13:46:32.851318: Running the command: "cactus_analyseAssembly HG01891.2.sanitized.fa"
Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 19 Total-length: 154936345 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39833842 Median-sequence-length: 1908248 Max-sequence-length: 52377194 Min-sequence-length: 79245

2023-07-05 13:46:32.854613: Running the command: "cactus_analyseAssembly HG00621.2.sanitized.fa"
2023-07-05 13:46:32.854701: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/6929/aed9/tmpdvwryvau/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p'" in 2.0221 seconds and 154.0 Mi memory
2023-07-05 13:46:32.856150: Running the command: "cactus_analyseAssembly HG02148.1.sanitized.fa"
2023-07-05 13:46:32.856307: Running the command: "cactus_analyseAssembly HG01891.1.sanitized.fa"
2023-07-05 13:46:32.857298: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/3cb3/4f5d/tmpo0u_3_u3/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p'" in 2.0056 seconds and 154.0 Mi memory
2023-07-05 13:46:32.858680: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/8ccf/d083/tmp2ozje4ub/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p'" in 2.0127 seconds and 154.0 Mi memory
2023-07-05 13:46:32.862913: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/bdad/378a/tmp3w1g1u2s/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 2.0153 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 24 Total-length: 154982383 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12891119 Median-sequence-length: 3339713 Max-sequence-length: 41243976 Min-sequence-length: 45483

2023-07-05 13:46:32.865602: Running the command: "cactus_analyseAssembly HG01361.1.sanitized.fa"
2023-07-05 13:46:32.866532: Running the command: "cactus_analyseAssembly HG00741.1.sanitized.fa"
2023-07-05 13:46:32.869468: Running the command: "cactus_analyseAssembly HG00735.1.sanitized.fa"
2023-07-05 13:46:32.872261: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
2023-07-05 13:46:32.873857: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/03df/1910/tmp8au0vmok/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p'" in 2.0736 seconds and 154.0 Mi memory
2023-07-05 13:46:32.877684: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/d8b2/5e49/tmpyf__66y_/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p'" in 2.0949 seconds and 154.0 Mi memory
2023-07-05 13:46:32.879827: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/fb6bb230be1f50648d9c685404953bb7/4ba1/e38f/tmp22c8b017/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p'" in 2.0453 seconds and 154.0 Mi memory
2023-07-05 13:46:32.882970: Running the command: "cactus_analyseAssembly HG02257.1.sanitized.fa"
Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 19 Total-length: 155721673 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40060069 Median-sequence-length: 1417602 Max-sequence-length: 42974506 Min-sequence-length: 36529

2023-07-05 13:46:32.886744: Running the command: "cactus_analyseAssembly HG03516.2.sanitized.fa"
2023-07-05 13:46:32.895829: Running the command: "cactus_analyseAssembly HG00735.2.sanitized.fa"
Got message from job at time 07-05-2023 13:46:32: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 26 Total-length: 152928210 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 11354398 Median-sequence-length: 3835955 Max-sequence-length: 41705652 Min-sequence-length: 50655

2023-07-05 13:46:34.049808: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 1.2786 seconds and 52.9 Mi memory
2023-07-05 13:46:34.051280: Successfully ran: "cactus_analyseAssembly HG02723.1.sanitized.fa" in 1.252 seconds and 24.8 Mi memory
2023-07-05 13:46:34.057919: Successfully ran: "cactus_analyseAssembly NA21309.2.sanitized.fa" in 1.2709 seconds and 51.9 Mi memory
2023-07-05 13:46:34.069325: Successfully ran: "cactus_analyseAssembly HG03098.1.sanitized.fa" in 1.2853 seconds and 71.2 Mi memory
2023-07-05 13:46:34.087723: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 1.281 seconds and 51.9 Mi memory
2023-07-05 13:46:34.090268: Successfully ran: "cactus_analyseAssembly HG02886.1.sanitized.fa" in 1.2729 seconds and 51.9 Mi memory
2023-07-05 13:46:34.090437: Successfully ran: "cactus_analyseAssembly HG00438.2.sanitized.fa" in 1.2994 seconds and 58.3 Mi memory
2023-07-05 13:46:34.094093: Successfully ran: "cactus_analyseAssembly HG01978.1.sanitized.fa" in 1.2915 seconds and 77.4 Mi memory
2023-07-05 13:46:34.097059: Successfully ran: "cactus_analyseAssembly HG02145.1.sanitized.fa" in 1.2764 seconds and 51.9 Mi memory
2023-07-05 13:46:34.100620: Successfully ran: "cactus_analyseAssembly HG02109.1.sanitized.fa" in 1.2843 seconds and 51.9 Mi memory
2023-07-05 13:46:34.106754: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 1.2804 seconds and 51.9 Mi memory
2023-07-05 13:46:34.111960: Successfully ran: "cactus_analyseAssembly HG02080.1.sanitized.fa" in 1.272 seconds and 51.9 Mi memory
2023-07-05 13:46:34.120219: Successfully ran: "cactus_analyseAssembly HG02630.1.sanitized.fa" in 1.2882 seconds and 51.9 Mi memory
2023-07-05 13:46:34.146039: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 1.2906 seconds and 77.1 Mi memory
2023-07-05 13:46:34.147546: Successfully ran: "cactus_analyseAssembly HG02080.2.sanitized.fa" in 1.2745 seconds and 51.9 Mi memory
2023-07-05 13:46:34.150450: Successfully ran: "cactus_analyseAssembly HG02148.1.sanitized.fa" in 1.2933 seconds and 77.1 Mi memory
2023-07-05 13:46:34.152252: Successfully ran: "cactus_analyseAssembly HG00733.1.sanitized.fa" in 1.3296 seconds and 153.9 Mi memory
2023-07-05 13:46:34.178465: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 1.3529 seconds and 182.3 Mi memory
2023-07-05 13:46:34.186233: Successfully ran: "cactus_analyseAssembly HG01891.2.sanitized.fa" in 1.3339 seconds and 153.9 Mi memory
2023-07-05 13:46:34.186656: Successfully ran: "cactus_analyseAssembly HG02622.2.sanitized.fa" in 1.3366 seconds and 153.9 Mi memory
2023-07-05 13:46:34.189484: Successfully ran: "cactus_analyseAssembly HG00741.1.sanitized.fa" in 1.3222 seconds and 153.9 Mi memory
2023-07-05 13:46:34.196906: Successfully ran: "cactus_analyseAssembly HG01361.1.sanitized.fa" in 1.3304 seconds and 153.9 Mi memory
2023-07-05 13:46:34.200573: Successfully ran: "cactus_analyseAssembly HG01891.1.sanitized.fa" in 1.3434 seconds and 153.9 Mi memory
2023-07-05 13:46:34.205279: Successfully ran: "cactus_analyseAssembly HG02257.1.sanitized.fa" in 1.3214 seconds and 153.9 Mi memory
2023-07-05 13:46:34.211791: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 1.3241 seconds and 153.9 Mi memory
2023-07-05 13:46:34.222079: Successfully ran: "cactus_analyseAssembly HG00735.1.sanitized.fa" in 1.3517 seconds and 153.9 Mi memory
2023-07-05 13:46:34.233105: Successfully ran: "cactus_analyseAssembly HG00735.2.sanitized.fa" in 1.3359 seconds and 153.9 Mi memory
Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-ll_8v6cp v1 with job batch system ID: 2665 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:46:36: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 5 Total-length: 192793884 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 158663023 Median-sequence-length: 7439602 Max-sequence-length: 158663023 Min-sequence-length: 1934823

Got message from job at time 07-05-2023 13:46:36: Assembly stats for NA20129.1: Input-sample: NA20129.1.sanitized.fa Total-sequences: 17 Total-length: 190869950 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20275493 Median-sequence-length: 7428732 Max-sequence-length: 41753276 Min-sequence-length: 20226

Got message from job at time 07-05-2023 13:46:36: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 5 Total-length: 190016708 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 132467270 Median-sequence-length: 23876184 Max-sequence-length: 132467270 Min-sequence-length: 962361

Got message from job at time 07-05-2023 13:46:36: Assembly stats for HG02622.1: Input-sample: HG02622.1.sanitized.fa Total-sequences: 4 Total-length: 191535095 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 99830739 Median-sequence-length: 51868217 Max-sequence-length: 99830739 Min-sequence-length: 1956897

Got message from job at time 07-05-2023 13:46:36: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 11 Total-length: 189907342 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36295226 Median-sequence-length: 10369703 Max-sequence-length: 48686314 Min-sequence-length: 44498

Got message from job at time 07-05-2023 13:46:36: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 10 Total-length: 191800417 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41611018 Median-sequence-length: 13553627 Max-sequence-length: 48003449 Min-sequence-length: 2081069

Got message from job at time 07-05-2023 13:46:36: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 21247 Total-length: 194317503 Proportion-repeat-masked: 0.002120 ProportionNs: 0.002120 Total-Ns: 411888 N50: 78556 Median-sequence-length: 104 Max-sequence-length: 2144113 Min-sequence-length: 1

Got message from job at time 07-05-2023 13:46:36: Assembly stats for HG03540.1: Input-sample: HG03540.1.sanitized.fa Total-sequences: 9 Total-length: 191507282 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 38496854 Median-sequence-length: 17587814 Max-sequence-length: 58260596 Min-sequence-length: 1998504

Got message from job at time 07-05-2023 13:46:36: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 23 Total-length: 188977350 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19302767 Median-sequence-length: 5087023 Max-sequence-length: 54613471 Min-sequence-length: 47378

Got message from job at time 07-05-2023 13:46:36: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 17 Total-length: 192761235 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19178588 Median-sequence-length: 7181387 Max-sequence-length: 45749481 Min-sequence-length: 422015

Got message from job at time 07-05-2023 13:46:36: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 18 Total-length: 190767014 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15399495 Median-sequence-length: 7434880 Max-sequence-length: 60171298 Min-sequence-length: 764867

Got message from job at time 07-05-2023 13:46:36: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 6 Total-length: 189616207 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 66443145 Median-sequence-length: 25936256 Max-sequence-length: 66974386 Min-sequence-length: 1973829

Got message from job at time 07-05-2023 13:46:36: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 11 Total-length: 191730210 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39244798 Median-sequence-length: 7875229 Max-sequence-length: 51987876 Min-sequence-length: 57227

Got message from job at time 07-05-2023 13:46:36: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 6 Total-length: 190398838 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 156750519 Median-sequence-length: 9245101 Max-sequence-length: 156750519 Min-sequence-length: 539065

Got message from job at time 07-05-2023 13:46:36: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 9 Total-length: 189493544 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 99740788 Median-sequence-length: 7493857 Max-sequence-length: 99740788 Min-sequence-length: 70281

Got message from job at time 07-05-2023 13:46:36: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 9 Total-length: 190894729 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36055811 Median-sequence-length: 12572133 Max-sequence-length: 50263562 Min-sequence-length: 2256983

Got message from job at time 07-05-2023 13:46:36: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 8 Total-length: 192870775 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41618141 Median-sequence-length: 21258097 Max-sequence-length: 60243067 Min-sequence-length: 2259481

Got message from job at time 07-05-2023 13:46:36: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 6 Total-length: 191491617 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 59212423 Median-sequence-length: 35806063 Max-sequence-length: 66970487 Min-sequence-length: 923118

Got message from job at time 07-05-2023 13:46:36: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 11 Total-length: 191104962 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29523187 Median-sequence-length: 11270592 Max-sequence-length: 52834497 Min-sequence-length: 38191

Got message from job at time 07-05-2023 13:46:36: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 16 Total-length: 191224053 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20596496 Median-sequence-length: 6907951 Max-sequence-length: 43464891 Min-sequence-length: 47317

Got message from job at time 07-05-2023 13:46:36: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 11 Total-length: 189504236 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 57954893 Median-sequence-length: 1393148 Max-sequence-length: 58426166 Min-sequence-length: 31729

Got message from job at time 07-05-2023 13:46:36: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 11 Total-length: 189541894 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 98448197 Median-sequence-length: 6728769 Max-sequence-length: 98448197 Min-sequence-length: 46922

Got message from job at time 07-05-2023 13:46:36: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 14 Total-length: 192649001 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 114904728 Median-sequence-length: 1999903 Max-sequence-length: 114904728 Min-sequence-length: 141091

Got message from job at time 07-05-2023 13:46:36: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 9 Total-length: 191441652 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34873661 Median-sequence-length: 14453073 Max-sequence-length: 80433147 Min-sequence-length: 61951

Got message from job at time 07-05-2023 13:46:36: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 10 Total-length: 190367763 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28814140 Median-sequence-length: 20233894 Max-sequence-length: 38478821 Min-sequence-length: 48631

Got message from job at time 07-05-2023 13:46:37: Assembly stats for HG01071.1: Input-sample: HG01071.1.sanitized.fa Total-sequences: 10 Total-length: 190348557 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 101116445 Median-sequence-length: 8832934 Max-sequence-length: 101116445 Min-sequence-length: 35838

Got message from job at time 07-05-2023 13:46:37: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 15 Total-length: 191091421 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19981590 Median-sequence-length: 7578821 Max-sequence-length: 37720958 Min-sequence-length: 460858

Got message from job at time 07-05-2023 13:46:37: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 18 Total-length: 190755785 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18535351 Median-sequence-length: 7155695 Max-sequence-length: 41883951 Min-sequence-length: 999682

Got message from job at time 07-05-2023 13:46:37: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 12 Total-length: 190520149 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37994789 Median-sequence-length: 11345137 Max-sequence-length: 50443345 Min-sequence-length: 30681

Got message from job at time 07-05-2023 13:46:37: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 9 Total-length: 191327305 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 50389370 Median-sequence-length: 7270117 Max-sequence-length: 79867692 Min-sequence-length: 31458

Got message from job at time 07-05-2023 13:46:37: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 10 Total-length: 192111465 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 38744606 Median-sequence-length: 13550352 Max-sequence-length: 52818773 Min-sequence-length: 46937

Got message from job at time 07-05-2023 13:46:37: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 193574945 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 193574945 Median-sequence-length: 193574945 Max-sequence-length: 193574945 Min-sequence-length: 193574945

Got message from job at time 07-05-2023 13:46:37: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 9 Total-length: 192501337 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23115295 Median-sequence-length: 20279879 Max-sequence-length: 60578274 Min-sequence-length: 5634295

Got message from job at time 07-05-2023 13:46:37: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 18 Total-length: 191583800 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19159197 Median-sequence-length: 6218213 Max-sequence-length: 38156067 Min-sequence-length: 1903979

Got message from job at time 07-05-2023 13:46:37: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 8 Total-length: 189844090 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25176422 Median-sequence-length: 24862196 Max-sequence-length: 39867493 Min-sequence-length: 12816533

Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-x6xw201n v1 with job batch system ID: 2666 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 13:46:38.139016: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/GRCh38.fa HG00438.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00438.1.fa HG00438.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00438.2.fa HG00621.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00621.1.fa HG00621.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00621.2.fa HG00673.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00673.2.fa HG00733.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00733.1.fa HG00733.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00733.2.fa HG01071.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01071.2.fa HG01106.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01106.2.fa HG01109.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01109.1.fa HG01109.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01109.2.fa HG01123.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01123.1.fa HG01123.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01123.2.fa HG01175.1 /da <...> ac396e74254b92ca/ff18/829a/tmpipezlkkg/Anc0.c2h.fa --outputReferenceFile /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chrOther): Params file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/Anc0.config.xml
cactus_consolidated(chrOther): Output file string : /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/Anc0.c2h
cactus_consolidated(chrOther): Output hal fasta file string : /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/Anc0.c2h.fa
cactus_consolidated(chrOther): Output reference fasta file string : /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/Anc0.ref
cactus_consolidated(chrOther): Sequence files and events: GRCh38 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/GRCh38.fa HG00438.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00438.1.fa HG00438.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00438.2.fa HG00621.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00621.1.fa HG00621.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00621.2.fa HG00673.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00673.2.fa HG00733.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00733.1.fa HG00733.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00733.2.fa HG01071.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01071.2.fa HG01106.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01106.2.fa HG01109.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01109.1.fa HG01109.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01109.2.fa HG01123.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01123.1.fa HG01123.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01123.2.fa HG01175.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01175.1.fa HG01175.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01175.2.fa HG01258.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01258.1.fa HG01258.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01258.2.fa HG01361.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01361.1.fa HG01361.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01361.2.fa HG01891.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01891.1.fa HG01928.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01928.1.fa HG01952.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01952.1.fa HG01952.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01952.2.fa HG01978.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01978.1.fa HG02080.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG02080.2.fa HG02109.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG02109.1.fa HG02109.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG02109.2.fa HG02145.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG02145.1.fa HG02145.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG02145.2.fa HG02148.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG02148.1.fa HG02148.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG02148.2.fa HG02257.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG02257.1.fa HG02486.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG02486.1.fa HG02559.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG02559.1.fa HG02559.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG02559.2.fa HG02572.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG02572.1.fa HG02572.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG02572.2.fa HG02630.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG02630.1.fa HG02723.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG02723.1.fa HG02723.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG02723.2.fa HG02818.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG02818.1.fa HG02818.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG02818.2.fa HG02886.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG02886.1.fa HG03098.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG03098.2.fa HG03453.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG03453.2.fa HG03486.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG03486.1.fa HG03486.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG03486.2.fa HG03492.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG03492.1.fa HG03492.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG03492.2.fa HG03516.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG03516.1.fa HG03516.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG03516.2.fa HG03579.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG03579.1.fa NA21309.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/NA21309.1.fa NA21309.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/NA21309.2.fa HG02080.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG02080.1.fa _MINIGRAPH_ /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/_MINIGRAPH_.fa
cactus_consolidated(chrOther): Alignments file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/Anc0_primary.paf
cactus_consolidated(chrOther): Secondary alignments file: (null)
cactus_consolidated(chrOther): Constraint alignments file: (null)
cactus_consolidated(chrOther): Species tree: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG01071.2:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01928.1:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02486.1:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02630.1:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG03098.2:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03579.1:0.025,NA21309.1:0.025,NA21309.2:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chrOther): Outgroup events:
cactus_consolidated(chrOther): Reference event: Anc0
cactus_consolidated(chrOther): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chrOther): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00438.1.fa to HG00438.1
cactus_consolidated(chrOther): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00438.2.fa to HG00438.2
cactus_consolidated(chrOther): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00438.2.fa
cactus_consolidated(chrOther): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrOther): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00621.1.fa to HG00621.1
cactus_consolidated(chrOther): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG02148.1.fa to HG02148.1
cactus_consolidated(chrOther): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG02148.1.fa
cactus_consolidated(chrOther): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG02148.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrOther): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG02148.2.fa to HG02148.2
cactus_consolidated(chrOther): Constructed the initial flower with 2492 sequences and 59 events with string: ((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG01071.2:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01928.1:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02486.1:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02630.1:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG03098.2:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03579.1:0.025,NA21309.1:0.025,NA21309.2:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chrOther): Established the first Flower in the hierarchy, 0 seconds have elapsed
cactus_consolidated(chrOther): Converted alignment coordinates, 0 seconds have elapsed
cactus_consolidated(chrOther): Stripped any unique IDs, 0 seconds have elapsed
Got message from job at time 07-05-2023 13:46:38: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 6 Total-length: 191228448 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 99828359 Median-sequence-length: 26121798 Max-sequence-length: 99828359 Min-sequence-length: 40782

Got message from job at time 07-05-2023 13:46:38: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 12 Total-length: 191483612 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24319374 Median-sequence-length: 15107954 Max-sequence-length: 52809005 Min-sequence-length: 33593

cactus_consolidated(chrOther): Sequence graph statistics after annealing:
Got message from job at time 07-05-2023 13:46:38: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 9 Total-length: 189382640 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52046345 Median-sequence-length: 9179379 Max-sequence-length: 78425607 Min-sequence-length: 900229

Got message from job at time 07-05-2023 13:46:38: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 7 Total-length: 192371003 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 133381171 Median-sequence-length: 7447755 Max-sequence-length: 133381171 Min-sequence-length: 75403

cactus_consolidated(chrOther): There were 16302 blocks in the sequence graph, representing 33990580 total aligned bases
cactus_consolidated(chrOther): Block degree stats: min 1, avg 13.961722, median 3, max 590
cactus_consolidated(chrOther): Block support stats: min 0.000000, avg 0.152361, median 0.083333, max 0.500000
cactus_consolidated(chrOther): Starting melting round with a minimum chain length of 2
Got message from job at time 07-05-2023 13:46:38: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 10 Total-length: 191277348 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52856763 Median-sequence-length: 18967227 Max-sequence-length: 59378195 Min-sequence-length: 107552

cactus_consolidated(chrOther): A melting round is destroying 781 blocks with an average degree of 36.453265 from chains with length less than 2. Total aligned bases lost: 28470
cactus_consolidated(chrOther): Starting melting round with a minimum chain length of 32
cactus_consolidated(chrOther): A melting round is destroying 4984 blocks with an average degree of 21.847512 from chains with length less than 32. Total aligned bases lost: 646674
cactus_consolidated(chrOther): Starting melting round with a minimum chain length of 512
cactus_consolidated(chrOther): A melting round is destroying 503 blocks with an average degree of 60.423459 from chains with length less than 512. Total aligned bases lost: 954131
cactus_consolidated(chrOther): A melting round is destroying 480 blocks with an average degree of 45.572917 from chains with length less than 2048. Total aligned bases lost: 1095694
cactus_consolidated(chrOther): Destroying 497 recoverable blocks
cactus_consolidated(chrOther): The blocks covered 183769 columns for a total of 1293723 aligned bases
cactus_consolidated(chrOther): Destroying 0 recoverable blocks
cactus_consolidated(chrOther): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chrOther): Sequence graph statistics after melting:
cactus_consolidated(chrOther): There were 8685 blocks in the sequence graph, representing 29661683 total aligned bases
cactus_consolidated(chrOther): Block degree stats: min 1, avg 3.154519, median 1, max 31
cactus_consolidated(chrOther): Block support stats: min 0.000000, avg 0.119629, median 0.000000, max 0.500000
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 295, header chrUn_KI270743v1 with length 210658 and 195542 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 667, header chr14_KI270725v1_random with length 172810 and 172336 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 1123, header JAHEPP010000213.1 with length 105058 and 2 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 475, header chr4_GL000008v2_random with length 209709 and 207584 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 1615, header JAHEOS010000171.1 with length 149807 and 41574 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 985, header JAHBCA010000206.1 with length 143152 and 110465 total bases aligned and 7226 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 523, header chrUn_KI270744v1 with length 168472 and 136664 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 1381, header JAGYYX010000161.1 with length 249168 and 137495 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 1375, header JAGYYU010000139.1 with length 1456235 and 366063 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 169, header chr22_KI270736v1_random with length 181920 and 180939 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 325, header chrUn_KI270438v1 with length 112505 and 93677 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 1237, header JAGYYY010000202.1 with length 192570 and 2 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 319, header chr16_KI270728v1_random with length 1872759 and 1863334 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 7789, header s188323 with length 100316 and 100260 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 703, header chrUn_KI270519v1 with length 138126 and 137240 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 1591, header JAHEOU010000289.1 with length 217149 and 147900 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 1567, header JAGYVJ010000177.1 with length 166592 and 2 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 655, header chrUn_KI270741v1 with length 157432 and 153560 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 1243, header JAGYYY010000237.1 with length 122679 and 2 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 955, header chrUn_KI270750v1 with length 148850 and 148720 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 979, header JAHBCB010000132.1 with length 223129 and 143076 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 673, header chrUn_GL000216v2 with length 176608 and 169547 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 271, header chrUn_KI270747v1 with length 198735 and 198117 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 163, header chr1_KI270706v1_random with length 175055 and 174566 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 613, header chr2_KI270716v1_random with length 153799 and 149240 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 1111, header JAHEPP010000294.1 with length 121773 and 2 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 12505, header s188708 with length 150754 and 150388 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 973, header chrUn_GL000220v1 with length 161802 and 151519 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 661, header chr9_KI270719v1_random with length 176845 and 175715 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 1747, header JAHEPC010000462.1 with length 181226 and 16095 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 1453, header JAHEPG010000276.1 with length 110018 and 2 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 1429, header JAHAMD010000146.1 with length 117606 and 2 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 12961, header s189350 with length 186739 and 183795 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 1993, header s189272 with length 158759 and 158636 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 10501, header s188707 with length 112551 and 111751 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 121, header chrUn_GL000218v1 with length 161147 and 156351 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 1663, header JAGYVV010000314.1 with length 134016 and 2 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 289, header chr1_KI270712v1_random with length 176043 and 172381 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 1117, header JAHEPP010000241.1 with length 226819 and 2 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 67, header chrUn_GL000224v1 with length 179693 and 177228 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 61, header chr1_KI270708v1_random with length 127682 and 127562 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 505, header chrUn_GL000219v1 with length 179198 and 178659 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 2071, header s188309 with length 155397 and 155036 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 1561, header JAGYVJ010000170.1 with length 121725 and 2 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 355, header chr22_KI270734v1_random with length 165050 and 164649 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 577, header chr14_GL000009v2_random with length 201709 and 201214 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 1669, header JAGYVV010000318.1 with length 148626 and 2 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 1069, header JAHEPQ010000275.1 with length 101196 and 2 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 433, header chr17_KI270729v1_random with length 280839 and 268640 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 277, header chr14_KI270722v1_random with length 194050 and 192379 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Attaching the sequence to the cactus root 637, header chr14_GL000225v1_random with length 211173 and 208528 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrOther): Ran cactus caf, 1 seconds have elapsed
cactus_consolidated(chrOther): Ran extended flowers ready for bar, 2 seconds have elapsed
2023-07-05 13:46:40.229309: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/5ca7/948f/tmplh9n6zhn/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p"
2023-07-05 13:46:40.231718: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/07a0/9378/tmpq8atpx7x/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p"
2023-07-05 13:46:40.232063: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/5736/b95a/tmpmu7560bv/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p"
2023-07-05 13:46:40.234117: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/8b33/95ed/tmpbkd1ny5b/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p"
2023-07-05 13:46:40.235263: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/d68d/0996/tmp_68kghup/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p"
2023-07-05 13:46:40.235824: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/6d99/334d/tmpab2yjzni/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p"
2023-07-05 13:46:40.235875: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/e1b9/a107/tmpcvbruc1y/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p"
2023-07-05 13:46:40.235930: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/6f8f/82d2/tmpk2da04_e/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
2023-07-05 13:46:40.241675: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/74e1/e54d/tmpqilhh7tz/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p"
2023-07-05 13:46:40.242122: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/6932/0137/tmp252xvzv4/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p"
2023-07-05 13:46:40.996153: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/d68d/0996/tmp_68kghup/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p'" in 0.7597 seconds and 19.7 Mi memory
2023-07-05 13:46:41.000460: Running the command: "cactus_analyseAssembly HG01243.1.sanitized.fa"
2023-07-05 13:46:41.007611: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/5736/b95a/tmpmu7560bv/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p'" in 0.7745 seconds and 51.9 Mi memory
2023-07-05 13:46:41.011800: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/5ca7/948f/tmplh9n6zhn/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p'" in 0.7815 seconds and 51.9 Mi memory
2023-07-05 13:46:41.012127: Running the command: "cactus_analyseAssembly HG01123.1.sanitized.fa"
2023-07-05 13:46:41.015615: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/6f8f/82d2/tmpk2da04_e/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p'" in 0.7785 seconds and 18.7 Mi memory
2023-07-05 13:46:41.015777: Running the command: "cactus_analyseAssembly HG02148.1.sanitized.fa"
2023-07-05 13:46:41.020096: Running the command: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa"
2023-07-05 13:46:41.038859: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/07a0/9378/tmpq8atpx7x/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p'" in 0.8062 seconds and 51.9 Mi memory
2023-07-05 13:46:41.043419: Running the command: "cactus_analyseAssembly HG00735.1.sanitized.fa"
2023-07-05 13:46:41.071118: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/74e1/e54d/tmpqilhh7tz/HG03098.2.fa | cactus_sanitizeFastaHeaders - HG03098.2 -p'" in 0.8283 seconds and 54.5 Mi memory
2023-07-05 13:46:41.073509: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/e1b9/a107/tmpcvbruc1y/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p'" in 0.8365 seconds and 51.9 Mi memory
2023-07-05 13:46:41.074398: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/8b33/95ed/tmpbkd1ny5b/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p'" in 0.8389 seconds and 51.9 Mi memory
2023-07-05 13:46:41.075454: Running the command: "cactus_analyseAssembly HG03098.2.sanitized.fa"
2023-07-05 13:46:41.077871: Running the command: "cactus_analyseAssembly HG00673.2.sanitized.fa"
2023-07-05 13:46:41.079199: Running the command: "cactus_analyseAssembly HG02886.2.sanitized.fa"
2023-07-05 13:46:41.095054: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/6d99/334d/tmpab2yjzni/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p'" in 0.8583 seconds and 53.2 Mi memory
2023-07-05 13:46:41.099518: Running the command: "cactus_analyseAssembly HG01928.2.sanitized.fa"
2023-07-05 13:46:41.101204: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/9fd0f61929a456269b41669e7d9612f5/6932/0137/tmp252xvzv4/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p'" in 0.8581 seconds and 51.9 Mi memory
2023-07-05 13:46:41.105359: Running the command: "cactus_analyseAssembly HG02717.2.sanitized.fa"
cactus_consolidated(chrEBV): Ran cactus bar (use poa:1), 31 seconds have elapsed
cactus_consolidated(chrEBV): There are 6 layers in the flowers hierarchy
cactus_consolidated(chrEBV): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chrEBV): Chose reference event 2: Anc0
cactus_consolidated(chrEBV): For flower: 0 we have 0 nodes for: 598 ends, 1 chains, 0 stubs and 111 blocks
cactus_consolidated(chrEBV): Building a matching for 0 stub nodes in the top level problem from 376 total stubs of which 2 attached , 598 total ends, 1 chains, 111 blocks 112 groups and 188 sequences
cactus_consolidated(chrEBV): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chrEBV): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chrEBV): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chrEBV): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
cactus_consolidated(chrEBV): In the 1 layer there are 112 flowers in the flowers hierarchy
cactus_consolidated(chrEBV): In the 2 layer there are 1235 flowers in the flowers hierarchy
cactus_consolidated(chrEBV): In the 3 layer there are 684 flowers in the flowers hierarchy
cactus_consolidated(chrEBV): In the 4 layer there are 53 flowers in the flowers hierarchy
cactus_consolidated(chrEBV): In the 5 layer there are 11 flowers in the flowers hierarchy
cactus_consolidated(chrEBV): Ran cactus make reference, 31 seconds have elapsed
2023-07-05 13:46:41.556596: Successfully ran: "cactus_analyseAssembly HG01243.1.sanitized.fa" in 0.5554 seconds and 19.6 Mi memory
2023-07-05 13:46:41.578536: Successfully ran: "cactus_analyseAssembly HG01123.1.sanitized.fa" in 0.5657 seconds and 51.9 Mi memory
2023-07-05 13:46:41.584827: Successfully ran: "cactus_analyseAssembly HG02148.1.sanitized.fa" in 0.5683 seconds and 51.9 Mi memory
2023-07-05 13:46:41.610744: Successfully ran: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa" in 0.5899 seconds and 18.5 Mi memory
2023-07-05 13:46:41.628865: Successfully ran: "cactus_analyseAssembly HG00735.1.sanitized.fa" in 0.5847 seconds and 51.9 Mi memory
2023-07-05 13:46:41.673669: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 0.5951 seconds and 51.9 Mi memory
2023-07-05 13:46:41.677531: Successfully ran: "cactus_analyseAssembly HG02886.2.sanitized.fa" in 0.5976 seconds and 51.9 Mi memory
2023-07-05 13:46:41.689136: Successfully ran: "cactus_analyseAssembly HG03098.2.sanitized.fa" in 0.613 seconds and 54.4 Mi memory
2023-07-05 13:46:41.715432: Successfully ran: "cactus_analyseAssembly HG02717.2.sanitized.fa" in 0.6091 seconds and 51.9 Mi memory
2023-07-05 13:46:41.716961: Successfully ran: "cactus_analyseAssembly HG01928.2.sanitized.fa" in 0.6167 seconds and 53.1 Mi memory
cactus_consolidated(chrEBV): Ran cactus make reference bottom up coordinates, 31 seconds have elapsed
cactus_consolidated(chrEBV): Ran cactus make reference top down coordinates, 31 seconds have elapsed
Got message from job at time 07-05-2023 13:46:41: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 9 Total-length: 82679511 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43667753 Median-sequence-length: 36106 Max-sequence-length: 43667753 Min-sequence-length: 16011

Got message from job at time 07-05-2023 13:46:41: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 6 Total-length: 81953393 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43096706 Median-sequence-length: 9459109 Max-sequence-length: 43096706 Min-sequence-length: 2967266

cactus_consolidated(chrEBV): Ran cactus to hal stage, 31 seconds have elapsed
cactus_consolidated(chrEBV): Dumped sequences for hal file, 31 seconds have elapsed
cactus_consolidated(chrEBV): Dumped reference sequences, 31 seconds have elapsed
cactus_consolidated(chrEBV): Cactus consolidated is done!, 31 seconds have elapsed
2023-07-05 13:46:42.026133: Successfully ran cactus_consolidated(chrEBV): "cactus_consolidated --sequences 'GRCh38 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/GRCh38.fa HG02145.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/HG02145.1.fa HG02723.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/HG02723.1.fa HG03516.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/HG03516.1.fa _MINIGRAPH_ /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/_MINIGRAPH_.fa' --speciesTree '(GRCh38:0.025,HG02145.1:0.025,HG02723.1:0.025,HG03516.1:0.025,_MINIGRAPH_:0.025)Anc0;' --logLevel INFO --alignments /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/Anc0_primary.paf --params /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/Anc0.config.xml --outputFile /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/Anc0.c2h --outputHalFastaFile /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/Anc0.c2h.fa --outputReferenceFile /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fb07/305f/tmp792i_6o5/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 31.34 seconds and 7.6 Gi memory with job-memory 11.1 Gi. Percent utilization: 68.3
Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 4 Total-length: 80970073 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20080347 Median-sequence-length: 20080347 Max-sequence-length: 36032423 Min-sequence-length: 8740053

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 4 Total-length: 82206821 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 57030631 Median-sequence-length: 24941881 Max-sequence-length: 57030631 Min-sequence-length: 25686

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 4 Total-length: 86899938 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 61953674 Median-sequence-length: 16102677 Max-sequence-length: 61953674 Min-sequence-length: 174271

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 9 Total-length: 159373360 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 36538931 Median-sequence-length: 4339992 Max-sequence-length: 55069743 Min-sequence-length: 191529

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 13 Total-length: 158733094 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31744974 Median-sequence-length: 7943465 Max-sequence-length: 49116282 Min-sequence-length: 81631

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 9 Total-length: 160588290 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 27 N50: 42928143 Median-sequence-length: 9901782 Max-sequence-length: 56394859 Min-sequence-length: 45405

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 9 Total-length: 160931093 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40684688 Median-sequence-length: 8905553 Max-sequence-length: 47322130 Min-sequence-length: 294558

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 3 Total-length: 83433265 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 58491195 Median-sequence-length: 24923787 Max-sequence-length: 58491195 Min-sequence-length: 18283

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 16 Total-length: 158151547 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 32437684 Median-sequence-length: 5891770 Max-sequence-length: 39703042 Min-sequence-length: 21333

Got message from job at time 07-05-2023 13:46:42: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 19 Total-length: 157715341 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 18510931 Median-sequence-length: 4282352 Max-sequence-length: 35938622 Min-sequence-length: 372452

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 11 Total-length: 158263975 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 45033991 Median-sequence-length: 7987550 Max-sequence-length: 46535414 Min-sequence-length: 1031647

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 14 Total-length: 157125632 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 29729335 Median-sequence-length: 2941033 Max-sequence-length: 55293518 Min-sequence-length: 47073

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 14 Total-length: 159095424 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36247197 Median-sequence-length: 6983116 Max-sequence-length: 45089171 Min-sequence-length: 21635

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 10 Total-length: 157915597 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 25 N50: 86724764 Median-sequence-length: 1229197 Max-sequence-length: 86724764 Min-sequence-length: 62438

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 12 Total-length: 161301441 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27587504 Median-sequence-length: 10234269 Max-sequence-length: 45085228 Min-sequence-length: 23428

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 7 Total-length: 160737411 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 56456623 Median-sequence-length: 12326572 Max-sequence-length: 60023583 Min-sequence-length: 259110

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 6 Total-length: 84836655 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 59858455 Median-sequence-length: 5871554 Max-sequence-length: 59858455 Min-sequence-length: 40093

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 3 Total-length: 85931674 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 60924828 Median-sequence-length: 16105821 Max-sequence-length: 60924828 Min-sequence-length: 8901025

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 10 Total-length: 158608562 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42854846 Median-sequence-length: 13524201 Max-sequence-length: 44014540 Min-sequence-length: 54796

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 11 Total-length: 158648335 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 27369262 Median-sequence-length: 14764317 Max-sequence-length: 29625620 Min-sequence-length: 372308

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 9 Total-length: 160474579 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 88067244 Median-sequence-length: 576354 Max-sequence-length: 88067244 Min-sequence-length: 28478

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 6 Total-length: 81882298 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 55183277 Median-sequence-length: 947355 Max-sequence-length: 55183277 Min-sequence-length: 71027

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 5 Total-length: 82371409 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 55009165 Median-sequence-length: 1661759 Max-sequence-length: 55009165 Min-sequence-length: 365041

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 6 Total-length: 83479803 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24950114 Median-sequence-length: 24796645 Max-sequence-length: 33396957 Min-sequence-length: 48518

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 6 Total-length: 160539698 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 81726978 Median-sequence-length: 17180529 Max-sequence-length: 81726978 Min-sequence-length: 38676

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG03453.1: Input-sample: HG03453.1.sanitized.fa Total-sequences: 10 Total-length: 159916923 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40513109 Median-sequence-length: 5439548 Max-sequence-length: 55358618 Min-sequence-length: 27420

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 5 Total-length: 79367404 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54399516 Median-sequence-length: 8769383 Max-sequence-length: 54399516 Min-sequence-length: 45033

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 6 Total-length: 160571350 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 91582670 Median-sequence-length: 4753560 Max-sequence-length: 91582670 Min-sequence-length: 22197

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG02622.1: Input-sample: HG02622.1.sanitized.fa Total-sequences: 2 Total-length: 82835207 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 81275260 Median-sequence-length: 81275260 Max-sequence-length: 81275260 Min-sequence-length: 1559947

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 1 Total-length: 83962080 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 83962080 Median-sequence-length: 83962080 Max-sequence-length: 83962080 Min-sequence-length: 83962080

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 3 Total-length: 87008576 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 73892809 Median-sequence-length: 9835831 Max-sequence-length: 73892809 Min-sequence-length: 3279936

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 9 Total-length: 83456246 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 49798293 Median-sequence-length: 3431263 Max-sequence-length: 49798293 Min-sequence-length: 20065

Got message from job at time 07-05-2023 13:46:42: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 4 Total-length: 93504300 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 68617096 Median-sequence-length: 12440791 Max-sequence-length: 68617096 Min-sequence-length: 3692866

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 17 Total-length: 160363159 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 14974165 Median-sequence-length: 6276669 Max-sequence-length: 31966197 Min-sequence-length: 32884

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 4 Total-length: 159759915 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 157897625 Median-sequence-length: 1012309 Max-sequence-length: 157897625 Min-sequence-length: 88878

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 18 Total-length: 161377259 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28020689 Median-sequence-length: 2733849 Max-sequence-length: 48374277 Min-sequence-length: 40450

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 5 Total-length: 83242373 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 55524160 Median-sequence-length: 1429611 Max-sequence-length: 55524160 Min-sequence-length: 682477

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 10 Total-length: 156387052 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41795652 Median-sequence-length: 2077349 Max-sequence-length: 55406068 Min-sequence-length: 64288

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 7 Total-length: 80182813 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52293392 Median-sequence-length: 2902810 Max-sequence-length: 52293392 Min-sequence-length: 19853

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 4 Total-length: 81993842 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52230646 Median-sequence-length: 24869323 Max-sequence-length: 52230646 Min-sequence-length: 159551

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG00735.1: Input-sample: HG00735.1.sanitized.fa Total-sequences: 8 Total-length: 159762971 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 27 N50: 51896926 Median-sequence-length: 4247327 Max-sequence-length: 55296855 Min-sequence-length: 137096

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 5 Total-length: 157875999 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 88751102 Median-sequence-length: 9171979 Max-sequence-length: 88751102 Min-sequence-length: 1052200

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 6 Total-length: 84442918 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52358310 Median-sequence-length: 5520136 Max-sequence-length: 52358310 Min-sequence-length: 57721

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 17 Total-length: 159980925 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 27759861 Median-sequence-length: 1053427 Max-sequence-length: 33801369 Min-sequence-length: 21085

Got message from job at time 07-05-2023 13:46:42: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 159345973 Proportion-repeat-masked: 0.002359 ProportionNs: 0.002359 Total-Ns: 375838 N50: 159345973 Median-sequence-length: 159345973 Max-sequence-length: 159345973 Min-sequence-length: 159345973

Got message from job at time 07-05-2023 13:46:42: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 13 Total-length: 159518050 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 29255895 Median-sequence-length: 6911473 Max-sequence-length: 39487386 Min-sequence-length: 37281

Got message from job at time 07-05-2023 13:46:42: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 5 Total-length: 161968677 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 105797484 Median-sequence-length: 839828 Max-sequence-length: 105797484 Min-sequence-length: 190365

Got message from job at time 07-05-2023 13:46:43: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 4 Total-length: 81502016 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 73049775 Median-sequence-length: 4208230 Max-sequence-length: 73049775 Min-sequence-length: 44900

Got message from job at time 07-05-2023 13:46:43: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 12 Total-length: 159724693 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 26 N50: 39889604 Median-sequence-length: 11428769 Max-sequence-length: 41018979 Min-sequence-length: 195704

Got message from job at time 07-05-2023 13:46:43: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 2 Total-length: 82599579 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 48936258 Median-sequence-length: 48936258 Max-sequence-length: 48936258 Min-sequence-length: 33663321

Got message from job at time 07-05-2023 13:46:43: Assembly stats for NA18906.1: Input-sample: NA18906.1.sanitized.fa Total-sequences: 6 Total-length: 160862382 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54700358 Median-sequence-length: 44380108 Max-sequence-length: 55404951 Min-sequence-length: 1000925

Got message from job at time 07-05-2023 13:46:43: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 8 Total-length: 160405326 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 53818472 Median-sequence-length: 9689800 Max-sequence-length: 55363411 Min-sequence-length: 355186

Got message from job at time 07-05-2023 13:46:43: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 5 Total-length: 86000429 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 48264612 Median-sequence-length: 12026919 Max-sequence-length: 48264612 Min-sequence-length: 2971707

Estimating cactus_consolidated(chr14) memory as 416.5 Gi from 91 sequences with total-sequence-size 7.9 Gi and paf-size 139799269 using <conslidatedMemory> configuration settings
Got message from job at time 07-05-2023 13:46:43: Ran cactus consolidated okay
Estimating cactus_consolidated(chr10) memory as 476.8 Gi from 91 sequences with total-sequence-size 11.6 Gi and paf-size 240960825 using <conslidatedMemory> configuration settings
Estimating cactus_consolidated(chr20) memory as 320.4 Gi from 91 sequences with total-sequence-size 5.6 Gi and paf-size 134843623 using <conslidatedMemory> configuration settings
Estimating cactus_consolidated(chr22) memory as 224.5 Gi from 91 sequences with total-sequence-size 3.4 Gi and paf-size 95892030 using <conslidatedMemory> configuration settings
Estimating cactus_consolidated(chr8) memory as 476.8 Gi from 91 sequences with total-sequence-size 12.5 Gi and paf-size 245912820 using <conslidatedMemory> configuration settings
Estimating cactus_consolidated(chr17) memory as 382.3 Gi from 91 sequences with total-sequence-size 7.1 Gi and paf-size 165490348 using <conslidatedMemory> configuration settings
Estimating cactus_consolidated(chr12) memory as 476.8 Gi from 91 sequences with total-sequence-size 11.4 Gi and paf-size 223604801 using <conslidatedMemory> configuration settings
Estimating cactus_consolidated(chr21) memory as 220.2 Gi from 91 sequences with total-sequence-size 3.3 Gi and paf-size 86674450 using <conslidatedMemory> configuration settings
Got message from job at time 07-05-2023 13:46:44: Assembly stats for NA18906.1: Input-sample: NA18906.1.sanitized.fa Total-sequences: 17 Total-length: 245626925 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32969138 Median-sequence-length: 6323555 Max-sequence-length: 67958781 Min-sequence-length: 23801

2023-07-05 13:46:45.002724: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/d271/2b80/tmpu59mlku9/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p"
2023-07-05 13:46:45.035788: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/5f02/e8b0/tmpdsxlee3x/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p"
2023-07-05 13:46:45.042247: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/a994/ba1a/tmp_g1fz3kv/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-05 13:46:45.043044: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7cf4/9b38/tmpmm7jose5/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p"
2023-07-05 13:46:45.056214: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/3d45/d12e/tmperarvxc2/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p"
2023-07-05 13:46:45.056697: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/5a93/2aef/tmp59krvt8_/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p"
2023-07-05 13:46:45.063713: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/aeb6/0ce7/tmp1vxkn45t/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p"
2023-07-05 13:46:45.066089: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/d3e7/1cd4/tmp646y6k11/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
2023-07-05 13:46:45.067765: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/fb09/88c0/tmpxmjjwaxt/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p"
2023-07-05 13:46:45.070826: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/ed51/a68e/tmpjxodmnts/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
Issued job 'export_hal' kind-export_hal/instance-9r8318_d v1 with job batch system ID: 2667 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 13:46:45.071744: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/15d1/ec12/tmp_a67d0ge/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-05 13:46:45.079927: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7056/9468/tmpo9jqo426/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p"
2023-07-05 13:46:45.080005: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/f981/c5dc/tmpcbvf8_wt/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p"
2023-07-05 13:46:45.081089: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/c9de/9f75/tmpvpw68lsd/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p"
2023-07-05 13:46:45.081683: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/46e8/c798/tmpm2qwchqn/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p"
2023-07-05 13:46:45.082465: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/aaed/93d3/tmp_61fehko/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p"
2023-07-05 13:46:45.082530: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/b882/9a49/tmpgr_krod4/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p"
Got message from job at time 07-05-2023 13:46:45: Assembly stats for HG03453.1: Input-sample: HG03453.1.sanitized.fa Total-sequences: 13 Total-length: 98047015 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17173024 Median-sequence-length: 5214755 Max-sequence-length: 27608875 Min-sequence-length: 22656

Got message from job at time 07-05-2023 13:46:45: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 6 Total-length: 101977788 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 56660486 Median-sequence-length: 18636584 Max-sequence-length: 56660486 Min-sequence-length: 18574

Got message from job at time 07-05-2023 13:46:45: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 14 Total-length: 241043958 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43449440 Median-sequence-length: 13645778 Max-sequence-length: 70821955 Min-sequence-length: 35173

Got message from job at time 07-05-2023 13:46:45: Assembly stats for HG00735.1: Input-sample: HG00735.1.sanitized.fa Total-sequences: 11 Total-length: 242342305 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 122021921 Median-sequence-length: 8064381 Max-sequence-length: 122021921 Min-sequence-length: 73795

Got message from job at time 07-05-2023 13:46:45: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 8 Total-length: 98722428 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17164649 Median-sequence-length: 15770412 Max-sequence-length: 27553321 Min-sequence-length: 526694

Got message from job at time 07-05-2023 13:46:45: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 5 Total-length: 104647011 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29034988 Median-sequence-length: 13820681 Max-sequence-length: 47408326 Min-sequence-length: 613074

2023-07-05 13:46:45.459312: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/22e3/7dbb/tmpc56n7mbj/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
2023-07-05 13:46:45.483647: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/1901/5289/tmpjik0n6mi/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p"
Got message from job at time 07-05-2023 13:46:45: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 8 Total-length: 99768387 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27260272 Median-sequence-length: 11946348 Max-sequence-length: 29577315 Min-sequence-length: 322452

Got message from job at time 07-05-2023 13:46:45: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 3 Total-length: 100113942 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 72461260 Median-sequence-length: 27582614 Max-sequence-length: 72461260 Min-sequence-length: 70068

Got message from job at time 07-05-2023 13:46:45: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 17 Total-length: 96447676 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 7319803 Median-sequence-length: 4204402 Max-sequence-length: 22988543 Min-sequence-length: 22343

2023-07-05 13:46:45.527060: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/e715/70a3/tmpeo86q0f0/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p"
2023-07-05 13:46:45.532407: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/f7e6/7796/tmpd6s_a11d/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p"
2023-07-05 13:46:45.537702: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/d2a5/be0f/tmpi14sbqy0/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p"
Got message from job at time 07-05-2023 13:46:45: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 12 Total-length: 242490253 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41101379 Median-sequence-length: 13540641 Max-sequence-length: 71712096 Min-sequence-length: 19800

2023-07-05 13:46:45.553992: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/e682/4e2f/tmpy6xwa821/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p"
2023-07-05 13:46:45.559751: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/caf0/aaf2/tmp7zoef86o/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p"
Got message from job at time 07-05-2023 13:46:45: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 2 Total-length: 96099675 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 57173280 Median-sequence-length: 57173280 Max-sequence-length: 57173280 Min-sequence-length: 38926395

2023-07-05 13:46:45.567824: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/2349/4630/tmp3npaz_vq/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p"
2023-07-05 13:46:45.585800: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/88e0/753c/tmp6wt4pkbu/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p"
Got message from job at time 07-05-2023 13:46:45: Assembly stats for HG00741.1: Input-sample: HG00741.1.sanitized.fa Total-sequences: 18 Total-length: 240232278 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 63943296 Median-sequence-length: 2976820 Max-sequence-length: 74497945 Min-sequence-length: 21133

2023-07-05 13:46:45.593942: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/e366/ab7a/tmpm97q7tc6/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p"
2023-07-05 13:46:45.608575: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/f946/5288/tmpz8q4chwb/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p"
Got message from job at time 07-05-2023 13:46:45: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 3 Total-length: 102368880 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42934667 Median-sequence-length: 42934667 Max-sequence-length: 45122217 Min-sequence-length: 14311996

2023-07-05 13:46:45.618432: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/3a67/d3a1/tmpiqqcf080/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p"
2023-07-05 13:46:45.621943: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/c2a9/fa47/tmp1l1oe0l0/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p"
2023-07-05 13:46:45.623657: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/7ae0/e643/tmp1e3zksmf/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p"
2023-07-05 13:46:45.624402: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/c923/745e/tmpz3znmsi2/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p"
Got message from job at time 07-05-2023 13:46:45: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 13 Total-length: 96469541 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 11836911 Median-sequence-length: 5139522 Max-sequence-length: 22384482 Min-sequence-length: 147899

2023-07-05 13:46:45.637884: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/fc44/6cda/tmp_3o7xc44/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p"
2023-07-05 13:46:45.642328: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/6164/580d/tmptut66ikz/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p"
2023-07-05 13:46:45.643475: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/ff70/7c00/tmp1hjxg43w/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p"
2023-07-05 13:46:45.644263: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/3cd2/ca37/tmptr2aoo18/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p"
2023-07-05 13:46:45.654398: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/07d8/aaec/tmpz6k_khyt/NA18906.1.fa | cactus_sanitizeFastaHeaders - NA18906.1 -p"
2023-07-05 13:46:45.658671: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/cdef/9cf4/tmpxo7256d1/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p"
2023-07-05 13:46:45.659440: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/be13/8979/tmps2cw4obh/HG02572.2.fa | cactus_sanitizeFastaHeaders - HG02572.2 -p"
2023-07-05 13:46:45.661126: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/14e9/e774/tmpbsmfq25r/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p"
2023-07-05 13:46:45.662717: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/d642/c735/tmpba2j3zbi/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p"
2023-07-05 13:46:45.663057: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/6b4c/53e8/tmp0qjoa75r/HG01123.1.fa | cactus_sanitizeFastaHeaders - HG01123.1 -p"
2023-07-05 13:46:45.673370: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/2b2b/191c/tmp7mo_03kt/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p"
Got message from job at time 07-05-2023 13:46:45: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 14 Total-length: 243048190 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37402219 Median-sequence-length: 13857219 Max-sequence-length: 63953521 Min-sequence-length: 25632

Got message from job at time 07-05-2023 13:46:45: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 14 Total-length: 241000910 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54602294 Median-sequence-length: 6879914 Max-sequence-length: 101357667 Min-sequence-length: 68299

Got message from job at time 07-05-2023 13:46:45: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 23 Total-length: 240018764 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37409000 Median-sequence-length: 4231606 Max-sequence-length: 43129919 Min-sequence-length: 31175

Got message from job at time 07-05-2023 13:46:45: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 12 Total-length: 242239818 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 80738618 Median-sequence-length: 6880961 Max-sequence-length: 111228942 Min-sequence-length: 43198

Got message from job at time 07-05-2023 13:46:45: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 13 Total-length: 240987494 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 64026957 Median-sequence-length: 6882028 Max-sequence-length: 101333917 Min-sequence-length: 57787

Got message from job at time 07-05-2023 13:46:45: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 11 Total-length: 96584685 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15769599 Median-sequence-length: 4135107 Max-sequence-length: 29042674 Min-sequence-length: 38719

Got message from job at time 07-05-2023 13:46:45: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 3 Total-length: 103776081 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 56644858 Median-sequence-length: 46602241 Max-sequence-length: 56644858 Min-sequence-length: 528982

Got message from job at time 07-05-2023 13:46:45: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 7 Total-length: 98183718 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16962774 Median-sequence-length: 15865236 Max-sequence-length: 29626762 Min-sequence-length: 260201

Got message from job at time 07-05-2023 13:46:46: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 16 Total-length: 239285681 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 60963946 Median-sequence-length: 6895954 Max-sequence-length: 101326982 Min-sequence-length: 21995

Got message from job at time 07-05-2023 13:46:46: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 18 Total-length: 241795027 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 21256839 Median-sequence-length: 7537071 Max-sequence-length: 72743540 Min-sequence-length: 65542

2023-07-05 13:46:46.270735: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/1901/5289/tmpjik0n6mi/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p'" in 0.7858 seconds and 51.9 Mi memory
2023-07-05 13:46:46.274923: Running the command: "cactus_analyseAssembly HG03579.2.sanitized.fa"
2023-07-05 13:46:46.316136: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/e682/4e2f/tmpy6xwa821/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p'" in 0.7607 seconds and 51.9 Mi memory
2023-07-05 13:46:46.322932: Running the command: "cactus_analyseAssembly HG02723.2.sanitized.fa"
2023-07-05 13:46:46.401230: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/22e3/7dbb/tmpc56n7mbj/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p'" in 0.9406 seconds and 153.9 Mi memory
2023-07-05 13:46:46.406027: Running the command: "cactus_analyseAssembly CHM13.sanitized.fa"
2023-07-05 13:46:46.425993: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/d2a5/be0f/tmpi14sbqy0/HG01123.2.fa | cactus_sanitizeFastaHeaders - HG01123.2 -p'" in 0.887 seconds and 51.9 Mi memory
2023-07-05 13:46:46.430504: Running the command: "cactus_analyseAssembly HG01123.2.sanitized.fa"
2023-07-05 13:46:46.440103: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/e715/70a3/tmpeo86q0f0/HG00735.1.fa | cactus_sanitizeFastaHeaders - HG00735.1 -p'" in 0.9117 seconds and 51.9 Mi memory
2023-07-05 13:46:46.444741: Running the command: "cactus_analyseAssembly HG00735.1.sanitized.fa"
2023-07-05 13:46:46.449147: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/f7e6/7796/tmpd6s_a11d/HG02572.1.fa | cactus_sanitizeFastaHeaders - HG02572.1 -p'" in 0.9155 seconds and 51.9 Mi memory
2023-07-05 13:46:46.450746: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/caf0/aaf2/tmp7zoef86o/HG02723.2.fa | cactus_sanitizeFastaHeaders - HG02723.2 -p'" in 0.8897 seconds and 17.8 Mi memory
2023-07-05 13:46:46.453840: Running the command: "cactus_analyseAssembly HG02572.1.sanitized.fa"
2023-07-05 13:46:46.455323: Running the command: "cactus_analyseAssembly HG02723.2.sanitized.fa"
2023-07-05 13:46:46.494527: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/c2a9/fa47/tmp1l1oe0l0/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 0.8713 seconds and 22.3 Mi memory
2023-07-05 13:46:46.499515: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-05 13:46:46.505537: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/2349/4630/tmp3npaz_vq/HG03486.1.fa | cactus_sanitizeFastaHeaders - HG03486.1 -p'" in 0.9365 seconds and 51.9 Mi memory
2023-07-05 13:46:46.510338: Running the command: "cactus_analyseAssembly HG03486.1.sanitized.fa"
2023-07-05 13:46:46.518673: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/88e0/753c/tmp6wt4pkbu/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p'" in 0.9316 seconds and 51.9 Mi memory
2023-07-05 13:46:46.521295: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/e366/ab7a/tmpm97q7tc6/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p'" in 0.926 seconds and 51.9 Mi memory
2023-07-05 13:46:46.523117: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/c923/745e/tmpz3znmsi2/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p'" in 0.8974 seconds and 51.9 Mi memory
2023-07-05 13:46:46.523614: Running the command: "cactus_analyseAssembly HG00673.2.sanitized.fa"
2023-07-05 13:46:46.525998: Running the command: "cactus_analyseAssembly HG01071.2.sanitized.fa"
2023-07-05 13:46:46.527721: Running the command: "cactus_analyseAssembly HG01928.1.sanitized.fa"
2023-07-05 13:46:46.528794: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/7ae0/e643/tmp1e3zksmf/HG03579.2.fa | cactus_sanitizeFastaHeaders - HG03579.2 -p'" in 0.9039 seconds and 51.9 Mi memory
2023-07-05 13:46:46.533233: Running the command: "cactus_analyseAssembly HG03579.2.sanitized.fa"
2023-07-05 13:46:46.534635: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/d642/c735/tmpba2j3zbi/HG00733.1.fa | cactus_sanitizeFastaHeaders - HG00733.1 -p'" in 0.8707 seconds and 51.9 Mi memory
2023-07-05 13:46:46.538821: Running the command: "cactus_analyseAssembly HG00733.1.sanitized.fa"
2023-07-05 13:46:46.554408: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/3a67/d3a1/tmpiqqcf080/HG02886.1.fa | cactus_sanitizeFastaHeaders - HG02886.1 -p'" in 0.9348 seconds and 51.9 Mi memory
2023-07-05 13:46:46.558798: Running the command: "cactus_analyseAssembly HG02886.1.sanitized.fa"
2023-07-05 13:46:46.568855: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/fc44/6cda/tmp_3o7xc44/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p'" in 0.9297 seconds and 51.9 Mi memory
2023-07-05 13:46:46.589508: Running the command: "cactus_analyseAssembly NA18906.1.sanitized.fa"
2023-07-05 13:46:46.592838: Running the command: "cactus_analyseAssembly HG02622.2.sanitized.fa"
2023-07-05 13:46:46.598776: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/2b2b/191c/tmp7mo_03kt/HG01978.1.fa | cactus_sanitizeFastaHeaders - HG01978.1 -p'" in 0.9242 seconds and 55.5 Mi memory
2023-07-05 13:46:46.602541: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/6164/580d/tmptut66ikz/HG02055.1.fa | cactus_sanitizeFastaHeaders - HG02055.1 -p'" in 0.959 seconds and 154.0 Mi memory
2023-07-05 13:46:46.634273: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/ff70/7c00/tmp1hjxg43w/_MINIGRAPH_.fa | cactus_sanitizeFastaHeaders - _MINIGRAPH_ -p'" in 0.9895 seconds and 18.8 Mi memory
2023-07-05 13:46:46.639047: Running the command: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa"
2023-07-05 13:46:46.661463: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/cdef/9cf4/tmpxo7256d1/HG03516.1.fa | cactus_sanitizeFastaHeaders - HG03516.1 -p'" in 1.0013 seconds and 153.9 Mi memory
2023-07-05 13:46:46.665789: Running the command: "cactus_analyseAssembly HG03516.1.sanitized.fa"
2023-07-05 13:46:46.758218: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2a95a9ee729755068515bad92da082de/f946/5288/tmpz8q4chwb/HG01243.1.fa | cactus_sanitizeFastaHeaders - HG01243.1 -p'" in 1.1484 seconds and 51.9 Mi memory
2023-07-05 13:46:46.762622: Running the command: "cactus_analyseAssembly HG01243.1.sanitized.fa"
2023-07-05 13:46:46.830833: Successfully ran: "cactus_analyseAssembly HG03579.2.sanitized.fa" in 0.5551 seconds and 51.9 Mi memory
2023-07-05 13:46:46.869031: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 0.545 seconds and 51.9 Mi memory
2023-07-05 13:46:47.058854: Successfully ran: "cactus_analyseAssembly HG01123.2.sanitized.fa" in 0.6276 seconds and 51.9 Mi memory
2023-07-05 13:46:47.070452: Successfully ran: "cactus_analyseAssembly HG00735.1.sanitized.fa" in 0.6248 seconds and 51.9 Mi memory
2023-07-05 13:46:47.079905: Successfully ran: "cactus_analyseAssembly HG02723.2.sanitized.fa" in 0.6238 seconds and 17.8 Mi memory
2023-07-05 13:46:47.080688: Successfully ran: "cactus_analyseAssembly HG02572.1.sanitized.fa" in 0.626 seconds and 51.9 Mi memory
2023-07-05 13:46:47.103907: Successfully ran: "cactus_analyseAssembly CHM13.sanitized.fa" in 0.697 seconds and 153.9 Mi memory
2023-07-05 13:46:47.111270: Successfully ran: "cactus_analyseAssembly HG02723.1.sanitized.fa" in 0.6109 seconds and 22.2 Mi memory
2023-07-05 13:46:47.156168: Successfully ran: "cactus_analyseAssembly HG03579.2.sanitized.fa" in 0.6221 seconds and 51.9 Mi memory
2023-07-05 13:46:47.165212: Successfully ran: "cactus_analyseAssembly HG00733.1.sanitized.fa" in 0.6257 seconds and 51.9 Mi memory
2023-07-05 13:46:47.165929: Successfully ran: "cactus_analyseAssembly HG03486.1.sanitized.fa" in 0.6547 seconds and 51.9 Mi memory
2023-07-05 13:46:47.172774: Successfully ran: "cactus_analyseAssembly HG01928.1.sanitized.fa" in 0.6442 seconds and 51.9 Mi memory
2023-07-05 13:46:47.187753: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 0.6634 seconds and 51.9 Mi memory
2023-07-05 13:46:47.188532: Successfully ran: "cactus_analyseAssembly HG02886.1.sanitized.fa" in 0.629 seconds and 51.9 Mi memory
2023-07-05 13:46:47.191350: Successfully ran: "cactus_analyseAssembly HG01071.2.sanitized.fa" in 0.6645 seconds and 51.9 Mi memory
2023-07-05 13:46:47.206486: Successfully ran: "cactus_analyseAssembly HG01952.1.sanitized.fa" in 0.6298 seconds and 51.9 Mi memory
2023-07-05 13:46:47.226699: Successfully ran: "cactus_analyseAssembly HG01175.2.sanitized.fa" in 0.6527 seconds and 51.9 Mi memory
2023-07-05 13:46:47.234942: Successfully ran: "cactus_analyseAssembly HG02622.2.sanitized.fa" in 0.6414 seconds and 54.9 Mi memory
2023-07-05 13:46:47.235735: Successfully ran: "cactus_analyseAssembly HG01123.1.sanitized.fa" in 0.6526 seconds and 51.9 Mi memory
2023-07-05 13:46:47.250411: Successfully ran: "cactus_analyseAssembly NA18906.1.sanitized.fa" in 0.66 seconds and 51.9 Mi memory
2023-07-05 13:46:47.255622: Successfully ran: "cactus_analyseAssembly HG02572.2.sanitized.fa" in 0.646 seconds and 51.9 Mi memory
2023-07-05 13:46:47.279620: Successfully ran: "cactus_analyseAssembly HG01978.1.sanitized.fa" in 0.6756 seconds and 55.5 Mi memory
2023-07-05 13:46:47.321188: Successfully ran: "cactus_analyseAssembly HG02055.1.sanitized.fa" in 0.7135 seconds and 153.9 Mi memory
2023-07-05 13:46:47.370322: Successfully ran: "cactus_analyseAssembly _MINIGRAPH_.sanitized.fa" in 0.7304 seconds and 18.5 Mi memory
2023-07-05 13:46:47.389984: Successfully ran: "cactus_analyseAssembly HG01243.1.sanitized.fa" in 0.6265 seconds and 51.9 Mi memory
2023-07-05 13:46:47.437552: Successfully ran: "cactus_analyseAssembly HG03516.1.sanitized.fa" in 0.771 seconds and 153.9 Mi memory
2023-07-05 13:46:47.565125: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5b4d/7bb6/tmpvjlc69az/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p"
2023-07-05 13:46:47.592728: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ee03/8efb/tmpnt6hu83e/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p"
2023-07-05 13:46:47.594544: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/33d1/4023/tmp6s29v_kv/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p"
2023-07-05 13:46:47.594666: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/699d/d5e1/tmp9vhks7co/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-05 13:46:47.612741: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/fab4/6f4b/tmp150gqzug/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p"
2023-07-05 13:46:47.616667: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/abd5/b44c/tmp8n85wcs3/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p"
2023-07-05 13:46:47.618245: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5b9b/5fbc/tmpdj0tdd52/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p"
2023-07-05 13:46:47.618332: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6894/5b0d/tmpjmeulm4a/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p"
2023-07-05 13:46:47.625632: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c3f5/8667/tmp3k3wk3q1/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p"
2023-07-05 13:46:47.625793: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9f80/8c95/tmp5q_w7ui5/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p"
2023-07-05 13:46:47.630373: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e1a6/264a/tmpapwe83ys/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p"
2023-07-05 13:46:47.635169: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1f92/a4b8/tmp3cdpoc71/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p"
2023-07-05 13:46:47.636939: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/897b/f540/tmpej6mypnr/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p"
2023-07-05 13:46:47.637106: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c125/43b3/tmp4400zrno/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p"
2023-07-05 13:46:47.638733: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e8d6/ccde/tmprj1n04y6/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p"
2023-07-05 13:46:47.645273: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ae8/b105/tmpjog5s6jw/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p"
2023-07-05 13:46:47.645474: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f17a/83a1/tmpkjj4d0m5/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p"
2023-07-05 13:46:47.651199: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b884/f967/tmpb86bpgyv/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p"
2023-07-05 13:46:47.651353: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/13c7/f064/tmpur7zrmh4/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p"
2023-07-05 13:46:47.652045: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a637/f4e0/tmppsnfe34e/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p"
2023-07-05 13:46:47.653908: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8292/dca2/tmpazypq10_/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p"
2023-07-05 13:46:47.656408: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c976/ab4b/tmpel15ynpv/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p"
2023-07-05 13:46:47.659797: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ac17/397f/tmp0wdtkve7/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p"
2023-07-05 13:46:47.660984: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/04c2/56de/tmpfx64nnqb/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p"
2023-07-05 13:46:47.662259: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a151/80bf/tmpm5k2ihnv/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p"
2023-07-05 13:46:47.662675: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/97cf/53dd/tmp1g3cfoum/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p"
2023-07-05 13:46:47.665232: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/53f2/9835/tmp112cz_lc/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p"
2023-07-05 13:46:47.665290: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3114/2545/tmpjs3k3xqw/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p"
2023-07-05 13:46:47.667320: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a2cd/89e9/tmpu6rwld1s/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p"
2023-07-05 13:46:47.667369: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9509/efd1/tmpimltwoga/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p"
2023-07-05 13:46:47.669220: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c01f/c04e/tmp9n64_oqq/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p"
2023-07-05 13:46:47.669303: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8ed8/5322/tmp39vhuax9/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p"
2023-07-05 13:46:47.672973: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/d9e2/edaf/tmppey76eni/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p"
Got message from job at time 07-05-2023 13:46:48: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 16 Total-length: 201023792 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25818297 Median-sequence-length: 14516724 Max-sequence-length: 38313952 Min-sequence-length: 26601

2023-07-05 13:46:48.516940: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6894/5b0d/tmpjmeulm4a/HG02148.2.fa | cactus_sanitizeFastaHeaders - HG02148.2 -p'" in 0.8973 seconds and 51.9 Mi memory
2023-07-05 13:46:48.518391: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/fab4/6f4b/tmp150gqzug/HG03098.1.fa | cactus_sanitizeFastaHeaders - HG03098.1 -p'" in 0.9043 seconds and 51.9 Mi memory
2023-07-05 13:46:48.522171: Running the command: "cactus_analyseAssembly HG02148.2.sanitized.fa"
2023-07-05 13:46:48.524741: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/d271/2b80/tmpu59mlku9/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p'" in 3.5206 seconds and 68.7 Mi memory
2023-07-05 13:46:48.523601: Running the command: "cactus_analyseAssembly HG03098.1.sanitized.fa"
2023-07-05 13:46:48.528148: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c125/43b3/tmp4400zrno/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p'" in 0.8897 seconds and 22.5 Mi memory
2023-07-05 13:46:48.534093: Running the command: "cactus_analyseAssembly HG02717.2.sanitized.fa"
2023-07-05 13:46:48.533312: Running the command: "cactus_analyseAssembly HG03492.2.sanitized.fa"
Got message from job at time 07-05-2023 13:46:48: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 13 Total-length: 200360433 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51238894 Median-sequence-length: 6782667 Max-sequence-length: 52573783 Min-sequence-length: 49214

2023-07-05 13:46:48.534505: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1f92/a4b8/tmp3cdpoc71/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p'" in 0.8983 seconds and 51.9 Mi memory
2023-07-05 13:46:48.535253: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/33d1/4023/tmp6s29v_kv/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p'" in 0.9395 seconds and 70.0 Mi memory
2023-07-05 13:46:48.539089: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ee03/8efb/tmpnt6hu83e/HG02717.2.fa | cactus_sanitizeFastaHeaders - HG02717.2 -p'" in 0.945 seconds and 51.9 Mi memory
2023-07-05 13:46:48.539942: Running the command: "cactus_analyseAssembly HG02109.2.sanitized.fa"
2023-07-05 13:46:48.540782: Running the command: "cactus_analyseAssembly HG02486.2.sanitized.fa"
2023-07-05 13:46:48.543986: Running the command: "cactus_analyseAssembly HG02717.2.sanitized.fa"
2023-07-05 13:46:48.547267: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9f80/8c95/tmp5q_w7ui5/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p'" in 0.9202 seconds and 53.9 Mi memory
Got message from job at time 07-05-2023 13:46:48: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 14 Total-length: 200604702 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37881860 Median-sequence-length: 12425518 Max-sequence-length: 51946027 Min-sequence-length: 51920

2023-07-05 13:46:48.552454: Running the command: "cactus_analyseAssembly HG01071.1.sanitized.fa"
2023-07-05 13:46:48.552512: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/897b/f540/tmpej6mypnr/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p'" in 0.9142 seconds and 51.9 Mi memory
2023-07-05 13:46:48.556012: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8292/dca2/tmpazypq10_/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p'" in 0.901 seconds and 55.5 Mi memory
2023-07-05 13:46:48.557720: Running the command: "cactus_analyseAssembly NA21309.1.sanitized.fa"
2023-07-05 13:46:48.560788: Running the command: "cactus_analyseAssembly HG02559.1.sanitized.fa"
2023-07-05 13:46:48.562527: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e1a6/264a/tmpapwe83ys/HG03516.2.fa | cactus_sanitizeFastaHeaders - HG03516.2 -p'" in 0.9309 seconds and 51.9 Mi memory
2023-07-05 13:46:48.563704: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5b9b/5fbc/tmpdj0tdd52/HG02717.1.fa | cactus_sanitizeFastaHeaders - HG02717.1 -p'" in 0.944 seconds and 51.9 Mi memory
2023-07-05 13:46:48.563834: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c976/ab4b/tmpel15ynpv/HG00735.2.fa | cactus_sanitizeFastaHeaders - HG00735.2 -p'" in 0.9061 seconds and 55.5 Mi memory
2023-07-05 13:46:48.567283: Running the command: "cactus_analyseAssembly HG03516.2.sanitized.fa"
2023-07-05 13:46:48.568719: Running the command: "cactus_analyseAssembly HG02717.1.sanitized.fa"
2023-07-05 13:46:48.569066: Running the command: "cactus_analyseAssembly HG00735.2.sanitized.fa"
2023-07-05 13:46:48.569846: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/abd5/b44c/tmp8n85wcs3/HG03453.2.fa | cactus_sanitizeFastaHeaders - HG03453.2 -p'" in 0.9518 seconds and 51.9 Mi memory
2023-07-05 13:46:48.570113: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5b4d/7bb6/tmpvjlc69az/HG02818.1.fa | cactus_sanitizeFastaHeaders - HG02818.1 -p'" in 1.0036 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:46:48: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 3 Total-length: 196868459 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 103271217 Median-sequence-length: 92057082 Max-sequence-length: 103271217 Min-sequence-length: 1540160

2023-07-05 13:46:48.572210: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c3f5/8667/tmp3k3wk3q1/HG01106.2.fa | cactus_sanitizeFastaHeaders - HG01106.2 -p'" in 0.9455 seconds and 55.5 Mi memory
2023-07-05 13:46:48.575247: Running the command: "cactus_analyseAssembly HG02818.1.sanitized.fa"
2023-07-05 13:46:48.575293: Running the command: "cactus_analyseAssembly HG03453.2.sanitized.fa"
2023-07-05 13:46:48.577111: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/699d/d5e1/tmp9vhks7co/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p'" in 0.9812 seconds and 51.9 Mi memory
2023-07-05 13:46:48.577692: Running the command: "cactus_analyseAssembly HG01106.2.sanitized.fa"
2023-07-05 13:46:48.579413: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a637/f4e0/tmppsnfe34e/HG00621.1.fa | cactus_sanitizeFastaHeaders - HG00621.1 -p'" in 0.9261 seconds and 51.9 Mi memory
2023-07-05 13:46:48.580146: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b884/f967/tmpb86bpgyv/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p'" in 0.9276 seconds and 51.9 Mi memory
2023-07-05 13:46:48.580287: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/97cf/53dd/tmp1g3cfoum/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p'" in 0.9163 seconds and 51.9 Mi memory
2023-07-05 13:46:48.581850: Running the command: "cactus_analyseAssembly HG00733.2.sanitized.fa"
2023-07-05 13:46:48.582195: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/13c7/f064/tmpur7zrmh4/HG02630.2.fa | cactus_sanitizeFastaHeaders - HG02630.2 -p'" in 0.9298 seconds and 51.9 Mi memory
2023-07-05 13:46:48.583697: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e8d6/ccde/tmprj1n04y6/HG02559.2.fa | cactus_sanitizeFastaHeaders - HG02559.2 -p'" in 0.9437 seconds and 51.9 Mi memory
2023-07-05 13:46:48.584955: Running the command: "cactus_analyseAssembly HG00621.1.sanitized.fa"
2023-07-05 13:46:48.585607: Running the command: "cactus_analyseAssembly HG00741.1.sanitized.fa"
2023-07-05 13:46:48.585924: Running the command: "cactus_analyseAssembly HG03492.1.sanitized.fa"
2023-07-05 13:46:48.587012: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4ae8/b105/tmpjog5s6jw/HG01109.2.fa | cactus_sanitizeFastaHeaders - HG01109.2 -p'" in 0.9405 seconds and 51.9 Mi memory
2023-07-05 13:46:48.587604: Running the command: "cactus_analyseAssembly HG02630.2.sanitized.fa"
2023-07-05 13:46:48.589158: Running the command: "cactus_analyseAssembly HG02559.2.sanitized.fa"
2023-07-05 13:46:48.592361: Running the command: "cactus_analyseAssembly HG01109.2.sanitized.fa"
2023-07-05 13:46:48.595215: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ac17/397f/tmp0wdtkve7/HG01358.2.fa | cactus_sanitizeFastaHeaders - HG01358.2 -p'" in 0.9341 seconds and 51.9 Mi memory
2023-07-05 13:46:48.600284: Running the command: "cactus_analyseAssembly HG01358.2.sanitized.fa"
2023-07-05 13:46:48.606615: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/3d45/d12e/tmperarvxc2/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p'" in 3.549 seconds and 154.0 Mi memory
2023-07-05 13:46:48.609008: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f17a/83a1/tmpkjj4d0m5/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p'" in 0.9622 seconds and 153.9 Mi memory
2023-07-05 13:46:48.612883: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/ed51/a68e/tmpjxodmnts/HG02109.2.fa | cactus_sanitizeFastaHeaders - HG02109.2 -p'" in 3.5407 seconds and 52.7 Mi memory
2023-07-05 13:46:48.612772: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9509/efd1/tmpimltwoga/HG02886.2.fa | cactus_sanitizeFastaHeaders - HG02886.2 -p'" in 0.944 seconds and 22.5 Mi memory
2023-07-05 13:46:48.615121: Running the command: "cactus_analyseAssembly HG01243.2.sanitized.fa"
2023-07-05 13:46:48.613898: Running the command: "cactus_analyseAssembly HG01891.2.sanitized.fa"
2023-07-05 13:46:48.617818: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/a994/ba1a/tmp_g1fz3kv/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p'" in 3.5742 seconds and 68.9 Mi memory
2023-07-05 13:46:48.617980: Running the command: "cactus_analyseAssembly HG02886.2.sanitized.fa"
2023-07-05 13:46:48.622995: Running the command: "cactus_analyseAssembly HG02109.2.sanitized.fa"
2023-07-05 13:46:48.623729: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/3114/2545/tmpjs3k3xqw/HG01258.1.fa | cactus_sanitizeFastaHeaders - HG01258.1 -p'" in 0.9571 seconds and 54.7 Mi memory
2023-07-05 13:46:48.627442: Running the command: "cactus_analyseAssembly HG00733.2.sanitized.fa"
2023-07-05 13:46:48.626339: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c01f/c04e/tmp9n64_oqq/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p'" in 0.9558 seconds and 53.2 Mi memory
2023-07-05 13:46:48.627132: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a2cd/89e9/tmpu6rwld1s/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p'" in 0.9587 seconds and 51.9 Mi memory
2023-07-05 13:46:48.629439: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7cf4/9b38/tmpmm7jose5/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p'" in 3.5852 seconds and 154.0 Mi memory
2023-07-05 13:46:48.628947: Running the command: "cactus_analyseAssembly HG01258.1.sanitized.fa"
2023-07-05 13:46:48.629907: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/53f2/9835/tmp112cz_lc/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p'" in 0.9633 seconds and 51.9 Mi memory
2023-07-05 13:46:48.632167: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7056/9468/tmpo9jqo426/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p'" in 3.5511 seconds and 61.5 Mi memory
2023-07-05 13:46:48.631211: Running the command: "cactus_analyseAssembly HG02257.1.sanitized.fa"
2023-07-05 13:46:48.633417: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/fb09/88c0/tmpxmjjwaxt/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p'" in 3.5645 seconds and 154.0 Mi memory
2023-07-05 13:46:48.632469: Running the command: "cactus_analyseAssembly HG00621.2.sanitized.fa"
Got message from job at time 07-05-2023 13:46:48: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 4 Total-length: 202398391 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 108220036 Median-sequence-length: 92410056 Max-sequence-length: 108220036 Min-sequence-length: 214804

2023-07-05 13:46:48.634998: Running the command: "cactus_analyseAssembly HG00741.2.sanitized.fa"
2023-07-05 13:46:48.637544: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/6d2f/72c7/tmpbn2xd5dq/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p'" in 3.552 seconds and 72.8 Mi memory
2023-07-05 13:46:48.639168: Running the command: "cactus_analyseAssembly HG01361.2.sanitized.fa"
2023-07-05 13:46:48.639900: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/bb79/f8e4/tmp2648lnk0/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p'" in 3.5497 seconds and 51.9 Mi memory
2023-07-05 13:46:48.640486: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7615/9e7f/tmpxpmxinu8/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p'" in 3.5525 seconds and 51.9 Mi memory
2023-07-05 13:46:48.642063: Running the command: "cactus_analyseAssembly HG03540.1.sanitized.fa"
2023-07-05 13:46:48.642595: Running the command: "cactus_analyseAssembly HG01258.2.sanitized.fa"
2023-07-05 13:46:48.643876: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/5a93/2aef/tmp59krvt8_/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 3.5858 seconds and 51.9 Mi memory
2023-07-05 13:46:48.645173: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/b882/9a49/tmpgr_krod4/HG02559.1.fa | cactus_sanitizeFastaHeaders - HG02559.1 -p'" in 3.5615 seconds and 153.9 Mi memory
2023-07-05 13:46:48.646581: Running the command: "cactus_analyseAssembly HG02055.2.sanitized.fa"
2023-07-05 13:46:48.647438: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/aeb6/0ce7/tmp1vxkn45t/HG03492.2.fa | cactus_sanitizeFastaHeaders - HG03492.2 -p'" in 3.5827 seconds and 66.9 Mi memory
2023-07-05 13:46:48.646764: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/04c2/56de/tmpfx64nnqb/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p'" in 0.9846 seconds and 154.0 Mi memory
2023-07-05 13:46:48.646779: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a151/80bf/tmpm5k2ihnv/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p'" in 0.9832 seconds and 55.0 Mi memory
2023-07-05 13:46:48.648785: Running the command: "cactus_analyseAssembly HG02145.2.sanitized.fa"
2023-07-05 13:46:48.649282: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/b073/fcef/tmp6otyu5p2/NA21309.1.fa | cactus_sanitizeFastaHeaders - NA21309.1 -p'" in 3.5622 seconds and 51.9 Mi memory
2023-07-05 13:46:48.649789: Running the command: "cactus_analyseAssembly HG02630.1.sanitized.fa"
2023-07-05 13:46:48.650586: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/aaed/93d3/tmp_61fehko/HG01952.1.fa | cactus_sanitizeFastaHeaders - HG01952.1 -p'" in 3.5669 seconds and 154.0 Mi memory
2023-07-05 13:46:48.651484: Running the command: "cactus_analyseAssembly HG02257.2.sanitized.fa"
2023-07-05 13:46:48.651629: Running the command: "cactus_analyseAssembly HG01361.1.sanitized.fa"
2023-07-05 13:46:48.654345: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
Got message from job at time 07-05-2023 13:46:48: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 12 Total-length: 199775366 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35041880 Median-sequence-length: 16126742 Max-sequence-length: 37483622 Min-sequence-length: 161311

2023-07-05 13:46:48.656347: Running the command: "cactus_analyseAssembly HG02559.1.sanitized.fa"
2023-07-05 13:46:48.657535: Running the command: "cactus_analyseAssembly HG03492.2.sanitized.fa"
2023-07-05 13:46:48.658502: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/d3e7/1cd4/tmp646y6k11/HG00621.2.fa | cactus_sanitizeFastaHeaders - HG00621.2 -p'" in 3.5909 seconds and 154.0 Mi memory
2023-07-05 13:46:48.659455: Running the command: "cactus_analyseAssembly NA21309.1.sanitized.fa"
2023-07-05 13:46:48.660163: Running the command: "cactus_analyseAssembly HG01952.1.sanitized.fa"
2023-07-05 13:46:48.660370: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/f981/c5dc/tmpcbvf8_wt/HG01358.1.fa | cactus_sanitizeFastaHeaders - HG01358.1 -p'" in 3.5792 seconds and 154.0 Mi memory
2023-07-05 13:46:48.662599: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/15d1/ec12/tmp_a67d0ge/HG01175.2.fa | cactus_sanitizeFastaHeaders - HG01175.2 -p'" in 3.5898 seconds and 154.0 Mi memory
2023-07-05 13:46:48.665485: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/5ac9/00d7/tmp0zn5pct_/HG02257.1.fa | cactus_sanitizeFastaHeaders - HG02257.1 -p'" in 3.5715 seconds and 71.2 Mi memory
2023-07-05 13:46:48.666521: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/f5f1/2b2b/tmptwweolqo/HG02257.2.fa | cactus_sanitizeFastaHeaders - HG02257.2 -p'" in 3.5731 seconds and 154.0 Mi memory
2023-07-05 13:46:48.667870: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/46e8/c798/tmpm2qwchqn/HG01928.1.fa | cactus_sanitizeFastaHeaders - HG01928.1 -p'" in 3.5848 seconds and 154.0 Mi memory
2023-07-05 13:46:48.668647: Running the command: "cactus_analyseAssembly HG00621.2.sanitized.fa"
2023-07-05 13:46:48.669559: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/fb9d/de06/tmp6gtc2kn6/HG02723.1.fa | cactus_sanitizeFastaHeaders - HG02723.1 -p'" in 3.5767 seconds and 51.9 Mi memory
2023-07-05 13:46:48.670113: Running the command: "cactus_analyseAssembly HG01358.1.sanitized.fa"
Got message from job at time 07-05-2023 13:46:48: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 3 Total-length: 202239561 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 110251487 Median-sequence-length: 91970617 Max-sequence-length: 110251487 Min-sequence-length: 17457

2023-07-05 13:46:48.671852: Running the command: "cactus_analyseAssembly HG01175.2.sanitized.fa"
2023-07-05 13:46:48.672891: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/5f02/e8b0/tmpdsxlee3x/HG01106.1.fa | cactus_sanitizeFastaHeaders - HG01106.1 -p'" in 3.636 seconds and 154.0 Mi memory
2023-07-05 13:46:48.674162: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7455/d4df/tmp99b0v9g9/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p'" in 3.5861 seconds and 154.0 Mi memory
2023-07-05 13:46:48.675460: Running the command: "cactus_analyseAssembly HG02257.1.sanitized.fa"
2023-07-05 13:46:48.675885: Running the command: "cactus_analyseAssembly HG02257.2.sanitized.fa"
2023-07-05 13:46:48.678183: Running the command: "cactus_analyseAssembly HG01928.1.sanitized.fa"
2023-07-05 13:46:48.679778: Running the command: "cactus_analyseAssembly HG02723.1.sanitized.fa"
2023-07-05 13:46:48.681792: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/c9de/9f75/tmpvpw68lsd/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p'" in 3.5997 seconds and 154.0 Mi memory
2023-07-05 13:46:48.682792: Running the command: "cactus_analyseAssembly HG01106.1.sanitized.fa"
2023-07-05 13:46:48.683508: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/93e9/4114/tmpj4bezf20/HG01891.2.fa | cactus_sanitizeFastaHeaders - HG01891.2 -p'" in 3.5874 seconds and 154.0 Mi memory
2023-07-05 13:46:48.684562: Running the command: "cactus_analyseAssembly HG03540.2.sanitized.fa"
2023-07-05 13:46:48.685204: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/9f02/10f9/tmphepcg3xg/HG01361.1.fa | cactus_sanitizeFastaHeaders - HG01361.1 -p'" in 3.5903 seconds and 154.0 Mi memory
2023-07-05 13:46:48.685960: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/cd2d/9970/tmp94cbyb8n/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p'" in 3.5987 seconds and 154.0 Mi memory
2023-07-05 13:46:48.685950: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/8ed8/5322/tmp39vhuax9/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p'" in 1.0153 seconds and 154.0 Mi memory
2023-07-05 13:46:48.692265: Running the command: "cactus_analyseAssembly HG02486.2.sanitized.fa"
2023-07-05 13:46:48.691131: Running the command: "cactus_analyseAssembly HG01952.2.sanitized.fa"
2023-07-05 13:46:48.692765: Running the command: "cactus_analyseAssembly HG01891.2.sanitized.fa"
Got message from job at time 07-05-2023 13:46:48: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 9 Total-length: 203676817 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52344275 Median-sequence-length: 1729426 Max-sequence-length: 57230832 Min-sequence-length: 21463

2023-07-05 13:46:48.695282: Running the command: "cactus_analyseAssembly HG01361.1.sanitized.fa"
2023-07-05 13:46:48.695363: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/aa78/97e5/tmpyixfbg5d/HG02622.2.fa | cactus_sanitizeFastaHeaders - HG02622.2 -p'" in 3.6012 seconds and 153.9 Mi memory
2023-07-05 13:46:48.695502: Running the command: "cactus_analyseAssembly HG01978.2.sanitized.fa"
2023-07-05 13:46:48.696612: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/f33e/8daa/tmpvrvrh845/HG01952.2.fa | cactus_sanitizeFastaHeaders - HG01952.2 -p'" in 3.608 seconds and 154.0 Mi memory
2023-07-05 13:46:48.704705: Running the command: "cactus_analyseAssembly HG02622.2.sanitized.fa"
2023-07-05 13:46:48.705518: Running the command: "cactus_analyseAssembly HG01952.2.sanitized.fa"
Got message from job at time 07-05-2023 13:46:48: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 10 Total-length: 197015835 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52299219 Median-sequence-length: 15606089 Max-sequence-length: 52858731 Min-sequence-length: 30543

Got message from job at time 07-05-2023 13:46:48: Assembly stats for HG03453.1: Input-sample: HG03453.1.sanitized.fa Total-sequences: 9 Total-length: 198568222 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52654649 Median-sequence-length: 11787851 Max-sequence-length: 53772679 Min-sequence-length: 518742

2023-07-05 13:46:48.731579: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/a6df/562b/tmpcouexr2m/HG03492.1.fa | cactus_sanitizeFastaHeaders - HG03492.1 -p'" in 3.6383 seconds and 51.9 Mi memory
2023-07-05 13:46:48.740179: Running the command: "cactus_analyseAssembly HG03492.1.sanitized.fa"
Got message from job at time 07-05-2023 13:46:48: Assembly stats for HG02622.1: Input-sample: HG02622.1.sanitized.fa Total-sequences: 3 Total-length: 199776699 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 69898980 Median-sequence-length: 69898980 Max-sequence-length: 92027167 Min-sequence-length: 37850552

2023-07-05 13:46:48.752286: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7644/dcc8/tmpyyfu0h85/HG00673.2.fa | cactus_sanitizeFastaHeaders - HG00673.2 -p'" in 3.6647 seconds and 51.9 Mi memory
2023-07-05 13:46:48.752211: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/d9e2/edaf/tmppey76eni/CHM13.fa | cactus_sanitizeFastaHeaders - CHM13 -p'" in 1.078 seconds and 153.9 Mi memory
2023-07-05 13:46:48.757327: Running the command: "cactus_analyseAssembly CHM13.sanitized.fa"
2023-07-05 13:46:48.763100: Running the command: "cactus_analyseAssembly HG00673.2.sanitized.fa"
Estimating cactus_consolidated(chr19) memory as 303.0 Gi from 91 sequences with total-sequence-size 5.2 Gi and paf-size 153027679 using <conslidatedMemory> configuration settings
Got message from job at time 07-05-2023 13:46:48: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 18 Total-length: 198749671 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18570271 Median-sequence-length: 10784605 Max-sequence-length: 37382697 Min-sequence-length: 518195

Estimating cactus_consolidated(chr11) memory as 476.8 Gi from 91 sequences with total-sequence-size 11.5 Gi and paf-size 223109234 using <conslidatedMemory> configuration settings
Issued job 'cactus_cons' kind-cactus_cons/instance-0jvjvz3z v1 with job batch system ID: 2668 and disk: 17.2 Gi, memory: 224.5 Gi, cores: 64, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:46:48: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 4 Total-length: 198523375 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 67695748 Median-sequence-length: 67695748 Max-sequence-length: 91737731 Min-sequence-length: 1578743

Issued job 'cactus_cons' kind-cactus_cons/instance-sagks138 v1 with job batch system ID: 2669 and disk: 39.8 Gi, memory: 416.5 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'cactus_cons' kind-cactus_cons/instance-1o9ix68g v1 with job batch system ID: 2670 and disk: 35.8 Gi, memory: 382.3 Gi, cores: 64, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:46:49: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 3 Total-length: 200634799 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 70006659 Median-sequence-length: 70006659 Max-sequence-length: 92549869 Min-sequence-length: 38078271

Got message from job at time 07-05-2023 13:46:49: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 4 Total-length: 201767310 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 53047896 Median-sequence-length: 53047896 Max-sequence-length: 91878400 Min-sequence-length: 11855174

Issued job 'cactus_cons' kind-cactus_cons/instance-g2opke_2 v1 with job batch system ID: 2671 and disk: 28.5 Gi, memory: 320.4 Gi, cores: 64, accelerators: [], preemptible: False
2023-07-05 13:46:49.147030: Successfully ran: "cactus_analyseAssembly HG02148.2.sanitized.fa" in 0.624 seconds and 51.9 Mi memory
2023-07-05 13:46:49.151363: Successfully ran: "cactus_analyseAssembly HG03492.2.sanitized.fa" in 0.6171 seconds and 22.5 Mi memory
2023-07-05 13:46:49.152566: Successfully ran: "cactus_analyseAssembly HG03098.1.sanitized.fa" in 0.6282 seconds and 51.9 Mi memory
2023-07-05 13:46:49.167612: Successfully ran: "cactus_analyseAssembly HG02717.2.sanitized.fa" in 0.6228 seconds and 51.9 Mi memory
2023-07-05 13:46:49.167612: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 0.6268 seconds and 51.9 Mi memory
2023-07-05 13:46:49.182184: Successfully ran: "cactus_analyseAssembly HG02486.2.sanitized.fa" in 0.6406 seconds and 69.9 Mi memory
Got message from job at time 07-05-2023 13:46:49: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 8 Total-length: 195517871 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36468414 Median-sequence-length: 32955532 Max-sequence-length: 52134615 Min-sequence-length: 1494810

2023-07-05 13:46:49.195246: Successfully ran: "cactus_analyseAssembly NA21309.1.sanitized.fa" in 0.6367 seconds and 51.9 Mi memory
2023-07-05 13:46:49.196981: Successfully ran: "cactus_analyseAssembly HG01071.1.sanitized.fa" in 0.6436 seconds and 53.9 Mi memory
2023-07-05 13:46:49.197588: Successfully ran: "cactus_analyseAssembly HG02559.1.sanitized.fa" in 0.6358 seconds and 55.5 Mi memory
2023-07-05 13:46:49.199143: Successfully ran: "cactus_analyseAssembly HG03516.2.sanitized.fa" in 0.6311 seconds and 51.9 Mi memory
2023-07-05 13:46:49.201096: Successfully ran: "cactus_analyseAssembly HG02717.1.sanitized.fa" in 0.6315 seconds and 51.9 Mi memory
Issued job 'cactus_cons' kind-cactus_cons/instance-qjflgqov v1 with job batch system ID: 2672 and disk: 57.6 Gi, memory: 476.8 Gi, cores: 64, accelerators: [], preemptible: False
2023-07-05 13:46:49.203655: Successfully ran: "cactus_analyseAssembly HG02818.1.sanitized.fa" in 0.6276 seconds and 51.9 Mi memory
2023-07-05 13:46:49.206717: Successfully ran: "cactus_analyseAssembly HG00735.2.sanitized.fa" in 0.6368 seconds and 55.5 Mi memory
2023-07-05 13:46:49.207636: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 0.6251 seconds and 51.9 Mi memory
2023-07-05 13:46:49.211068: Successfully ran: "cactus_analyseAssembly HG03453.2.sanitized.fa" in 0.6349 seconds and 51.9 Mi memory
2023-07-05 13:46:49.214340: Successfully ran: "cactus_analyseAssembly HG01106.2.sanitized.fa" in 0.6359 seconds and 55.5 Mi memory
2023-07-05 13:46:49.217239: Successfully ran: "cactus_analyseAssembly HG00621.1.sanitized.fa" in 0.6314 seconds and 51.9 Mi memory
2023-07-05 13:46:49.221067: Successfully ran: "cactus_analyseAssembly HG02559.2.sanitized.fa" in 0.6311 seconds and 51.9 Mi memory
2023-07-05 13:46:49.223618: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 0.6368 seconds and 51.9 Mi memory
2023-07-05 13:46:49.231069: Successfully ran: "cactus_analyseAssembly HG00741.1.sanitized.fa" in 0.6446 seconds and 51.9 Mi memory
2023-07-05 13:46:49.234418: Successfully ran: "cactus_analyseAssembly HG01109.2.sanitized.fa" in 0.6413 seconds and 51.9 Mi memory
2023-07-05 13:46:49.245289: Successfully ran: "cactus_analyseAssembly HG02630.2.sanitized.fa" in 0.657 seconds and 51.9 Mi memory
2023-07-05 13:46:49.250794: Successfully ran: "cactus_analyseAssembly HG01358.2.sanitized.fa" in 0.6496 seconds and 51.9 Mi memory
2023-07-05 13:46:49.275031: Successfully ran: "cactus_analyseAssembly HG02886.2.sanitized.fa" in 0.6562 seconds and 22.5 Mi memory
Got message from job at time 07-05-2023 13:46:49: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 4 Total-length: 199951003 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 105803176 Median-sequence-length: 71480234 Max-sequence-length: 105803176 Min-sequence-length: 1566518

2023-07-05 13:46:49.296731: Successfully ran: "cactus_analyseAssembly HG00741.2.sanitized.fa" in 0.6609 seconds and 51.9 Mi memory
2023-07-05 13:46:49.297725: Successfully ran: "cactus_analyseAssembly HG01891.2.sanitized.fa" in 0.683 seconds and 153.9 Mi memory
2023-07-05 13:46:49.298746: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 0.6654 seconds and 51.9 Mi memory
Issued job 'cactus_cons' kind-cactus_cons/instance-vnvibp8v v1 with job batch system ID: 2673 and disk: 16.7 Gi, memory: 220.2 Gi, cores: 64, accelerators: [], preemptible: False
2023-07-05 13:46:49.304340: Successfully ran: "cactus_analyseAssembly HG01258.1.sanitized.fa" in 0.6745 seconds and 54.7 Mi memory
2023-07-05 13:46:49.309155: Successfully ran: "cactus_analyseAssembly HG02257.1.sanitized.fa" in 0.6771 seconds and 53.1 Mi memory
2023-07-05 13:46:49.314968: Successfully ran: "cactus_analyseAssembly HG02257.2.sanitized.fa" in 0.6626 seconds and 54.9 Mi memory
2023-07-05 13:46:49.362677: Successfully ran: "cactus_analyseAssembly HG01361.1.sanitized.fa" in 0.7101 seconds and 153.9 Mi memory
2023-07-05 13:46:49.418386: Successfully ran: "cactus_analyseAssembly HG01952.2.sanitized.fa" in 0.7263 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:46:49: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 4 Total-length: 200972954 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 107154913 Median-sequence-length: 73488183 Max-sequence-length: 107154913 Min-sequence-length: 1526530

Issued job 'cactus_cons' kind-cactus_cons/instance-tgxfzt90 v1 with job batch system ID: 2674 and disk: 63.0 Gi, memory: 476.8 Gi, cores: 64, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:46:49: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 8 Total-length: 198663581 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 45237648 Median-sequence-length: 18783053 Max-sequence-length: 73090069 Min-sequence-length: 1565269

2023-07-05 13:46:49.553688: Successfully ran: "cactus_analyseAssembly CHM13.sanitized.fa" in 0.7954 seconds and 153.9 Mi memory
Issued job 'cactus_cons' kind-cactus_cons/instance-e9ycwpyh v1 with job batch system ID: 2675 and disk: 58.3 Gi, memory: 476.8 Gi, cores: 64, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:46:49: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 4 Total-length: 199669916 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54421658 Median-sequence-length: 54421658 Max-sequence-length: 75917079 Min-sequence-length: 16398691

2023-07-05 13:46:49.762218: Running the command: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/caca/586f/tmpwxtc3q58/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/caca/586f/tmpwxtc3q58/Anc0.hal.fa (GRCh38:0.025,HG00438.2:0.025,HG00621.2:0.025,HG00673.2:0.025,HG00733.2:0.025,HG00735.2:0.025,HG00741.2:0.025,HG01106.2:0.025,HG01109.2:0.025,HG01123.2:0.025,HG01175.2:0.025,HG01243.2:0.025,HG01258.2:0.025,HG01358.2:0.025,HG01361.2:0.025,HG01891.2:0.025,HG01928.2:0.025,HG01952.2:0.025,HG01978.2:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.2:0.025,HG02145.2:0.025,HG02148.2:0.025,HG02257.2:0.025,HG02486.2:0.025,HG02559.2:0.025,HG02572.2:0.025,HG02622.2:0.025,HG02630.2:0.025,HG02717.2:0.025,HG02723.2:0.025,HG02818.2:0.025,HG02886.2:0.025,HG03098.2:0.025,HG03453.2:0.025,HG03486.2:0.025,HG03492.2:0.025,HG03516.2:0.025,HG03540.2:0.025,HG03579.2:0.025,NA18906.2:0.025,NA20129.2:0.025,CHM13:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/9eeeec3d467250f1999ba98b3759d207/caca/586f/tmpwxtc3q58/Anc0.hal --inMemory"
Got message from job at time 07-05-2023 13:46:49: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 10 Total-length: 200683340 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52706872 Median-sequence-length: 16403491 Max-sequence-length: 52878778 Min-sequence-length: 23444

Got message from job at time 07-05-2023 13:46:49: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 13 Total-length: 200935044 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18571550 Median-sequence-length: 12783148 Max-sequence-length: 42429875 Min-sequence-length: 1399995

Got message from job at time 07-05-2023 13:46:49: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 12 Total-length: 198980655 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33848491 Median-sequence-length: 13742222 Max-sequence-length: 51187561 Min-sequence-length: 517232

Got message from job at time 07-05-2023 13:46:49: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 7 Total-length: 198564124 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52406671 Median-sequence-length: 20946224 Max-sequence-length: 55873263 Min-sequence-length: 514073

Got message from job at time 07-05-2023 13:46:49: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 201105948 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 201105948 Median-sequence-length: 201105948 Max-sequence-length: 201105948 Min-sequence-length: 201105948

Got message from job at time 07-05-2023 13:46:49: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 5 Total-length: 199990888 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 64051967 Median-sequence-length: 40626983 Max-sequence-length: 92719773 Min-sequence-length: 1045469

Got message from job at time 07-05-2023 13:46:49: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 10 Total-length: 199856222 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37475392 Median-sequence-length: 15610159 Max-sequence-length: 52799696 Min-sequence-length: 286005

2023-07-05 13:46:50.000773: Successfully ran: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/caca/586f/tmpwxtc3q58/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/caca/586f/tmpwxtc3q58/Anc0.hal.fa '(GRCh38:0.025,HG00438.2:0.025,HG00621.2:0.025,HG00673.2:0.025,HG00733.2:0.025,HG00735.2:0.025,HG00741.2:0.025,HG01106.2:0.025,HG01109.2:0.025,HG01123.2:0.025,HG01175.2:0.025,HG01243.2:0.025,HG01258.2:0.025,HG01358.2:0.025,HG01361.2:0.025,HG01891.2:0.025,HG01928.2:0.025,HG01952.2:0.025,HG01978.2:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.2:0.025,HG02145.2:0.025,HG02148.2:0.025,HG02257.2:0.025,HG02486.2:0.025,HG02559.2:0.025,HG02572.2:0.025,HG02622.2:0.025,HG02630.2:0.025,HG02717.2:0.025,HG02723.2:0.025,HG02818.2:0.025,HG02886.2:0.025,HG03098.2:0.025,HG03453.2:0.025,HG03486.2:0.025,HG03492.2:0.025,HG03516.2:0.025,HG03540.2:0.025,HG03579.2:0.025,NA18906.2:0.025,NA20129.2:0.025,CHM13:0.025,_MINIGRAPH_:0.025)Anc0;' /data/tmp/9eeeec3d467250f1999ba98b3759d207/caca/586f/tmpwxtc3q58/Anc0.hal --inMemory" in 0.2375 seconds and 16.4 Mi memory with job-memory 4.1 Mi. Percent utilization: 395.3 **WARNING: limit exceeded**
2023-07-05 13:46:50.001613: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/caca/586f/tmpwxtc3q58/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 5 Total-length: 196619484 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 71454663 Median-sequence-length: 20383237 Max-sequence-length: 90807316 Min-sequence-length: 131069

Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 3 Total-length: 203512160 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 111206316 Median-sequence-length: 92277214 Max-sequence-length: 111206316 Min-sequence-length: 28630

Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 9 Total-length: 196138046 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 49906868 Median-sequence-length: 18769130 Max-sequence-length: 52554475 Min-sequence-length: 508927

Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 15 Total-length: 199218508 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 57385708 Median-sequence-length: 3591480 Max-sequence-length: 60429982 Min-sequence-length: 32814

Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 10 Total-length: 198818830 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39392131 Median-sequence-length: 15608288 Max-sequence-length: 53142708 Min-sequence-length: 520593

Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 4 Total-length: 199897088 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 107251361 Median-sequence-length: 92000695 Max-sequence-length: 107251361 Min-sequence-length: 128427

2023-07-05 13:46:50.126171: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/caca/586f/tmpwxtc3q58/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.1237 seconds and 5.5 Mi memory
2023-07-05 13:46:50.131241: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/caca/586f/tmpwxtc3q58/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 13:46:50.137460: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/caca/586f/tmpwxtc3q58/Anc0.hal CACTUS_CONFIG 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 <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0053 seconds and 5.9 Mi memory
2023-07-05 13:46:50.137676: Running the command: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/caca/586f/tmpwxtc3q58/Anc0.hal GRCh38"
2023-07-05 13:46:50.139266: Successfully ran: "cactus_analyseAssembly HG02717.2.sanitized.fa" in 1.6042 seconds and 68.6 Mi memory
Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 4 Total-length: 198472428 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51085188 Median-sequence-length: 51085188 Max-sequence-length: 66337263 Min-sequence-length: 39734751

Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 10 Total-length: 200492825 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42007581 Median-sequence-length: 13793319 Max-sequence-length: 75661757 Min-sequence-length: 22912

Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 9 Total-length: 87357706 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16586142 Median-sequence-length: 9341136 Max-sequence-length: 19674180 Min-sequence-length: 177451

Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 3 Total-length: 198938946 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 102510612 Median-sequence-length: 92284836 Max-sequence-length: 102510612 Min-sequence-length: 4143498

Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 5 Total-length: 200838916 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 108660916 Median-sequence-length: 21437622 Max-sequence-length: 108660916 Min-sequence-length: 2374184

Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 3 Total-length: 200535041 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 107587059 Median-sequence-length: 92815596 Max-sequence-length: 107587059 Min-sequence-length: 132386

Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 17 Total-length: 87740470 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18300092 Median-sequence-length: 226371 Max-sequence-length: 31796635 Min-sequence-length: 21376

Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 8 Total-length: 93779336 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54860574 Median-sequence-length: 3061775 Max-sequence-length: 54860574 Min-sequence-length: 890969

Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 6 Total-length: 202125780 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52065156 Median-sequence-length: 38752325 Max-sequence-length: 57673505 Min-sequence-length: 13893794

2023-07-05 13:46:50.260234: Successfully ran: "cactus_analyseAssembly HG02109.2.sanitized.fa" in 1.6361 seconds and 52.6 Mi memory
Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 4 Total-length: 198941304 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 72164963 Median-sequence-length: 72164963 Max-sequence-length: 91192359 Min-sequence-length: 23360

2023-07-05 13:46:50.271763: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 1.6432 seconds and 68.9 Mi memory
2023-07-05 13:46:50.279508: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 1.6297 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 18 Total-length: 198246512 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18801736 Median-sequence-length: 7137436 Max-sequence-length: 51807151 Min-sequence-length: 61761

2023-07-05 13:46:50.284024: Successfully ran: "cactus_analyseAssembly HG01243.2.sanitized.fa" in 1.6678 seconds and 153.9 Mi memory
2023-07-05 13:46:50.287186: Successfully ran: "cactus_analyseAssembly HG02055.2.sanitized.fa" in 1.6395 seconds and 72.7 Mi memory
2023-07-05 13:46:50.287220: Successfully ran: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/caca/586f/tmpwxtc3q58/Anc0.hal GRCh38" in 0.1489 seconds and 6.5 Mi memory with job-memory 4.1 Mi. Percent utilization: 156.9 **WARNING: limit exceeded**
2023-07-05 13:46:50.289225: Successfully ran: "cactus_analyseAssembly HG03540.1.sanitized.fa" in 1.646 seconds and 61.4 Mi memory
2023-07-05 13:46:50.289794: Successfully ran: "cactus_analyseAssembly HG02630.1.sanitized.fa" in 1.6391 seconds and 51.9 Mi memory
2023-07-05 13:46:50.291890: Successfully ran: "cactus_analyseAssembly HG02080.2.sanitized.fa" in 1.6365 seconds and 51.9 Mi memory
2023-07-05 13:46:50.292392: Successfully ran: "cactus_analyseAssembly NA21309.1.sanitized.fa" in 1.6321 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 4 Total-length: 200572232 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 105763692 Median-sequence-length: 57898501 Max-sequence-length: 105763692 Min-sequence-length: 1561699

2023-07-05 13:46:50.295829: Successfully ran: "cactus_analyseAssembly HG00673.2.sanitized.fa" in 1.5318 seconds and 51.9 Mi memory
2023-07-05 13:46:50.303455: Successfully ran: "cactus_analyseAssembly HG03492.2.sanitized.fa" in 1.6449 seconds and 66.8 Mi memory
Got message from job at time 07-05-2023 13:46:50: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 7 Total-length: 200483713 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 59828655 Median-sequence-length: 13943580 Max-sequence-length: 85799236 Min-sequence-length: 2708627

2023-07-05 13:46:50.313155: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 1.673 seconds and 153.9 Mi memory
2023-07-05 13:46:50.320582: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 1.6769 seconds and 153.9 Mi memory
2023-07-05 13:46:50.324105: Successfully ran: "cactus_analyseAssembly HG02723.1.sanitized.fa" in 1.6434 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 5 Total-length: 200053299 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52838210 Median-sequence-length: 39747497 Max-sequence-length: 55241198 Min-sequence-length: 13749312

2023-07-05 13:46:50.333166: Successfully ran: "cactus_analyseAssembly HG02257.1.sanitized.fa" in 1.6566 seconds and 71.2 Mi memory
2023-07-05 13:46:50.337542: Successfully ran: "cactus_analyseAssembly HG02559.1.sanitized.fa" in 1.68 seconds and 153.9 Mi memory
2023-07-05 13:46:50.339308: Successfully ran: "cactus_analyseAssembly HG01952.1.sanitized.fa" in 1.678 seconds and 153.9 Mi memory
2023-07-05 13:46:50.347230: Successfully ran: "cactus_analyseAssembly HG00621.2.sanitized.fa" in 1.6778 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 5 Total-length: 197544828 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 49776303 Median-sequence-length: 39737033 Max-sequence-length: 92860515 Min-sequence-length: 2255348

2023-07-05 13:46:50.348989: Successfully ran: "cactus_analyseAssembly HG01358.1.sanitized.fa" in 1.6775 seconds and 153.9 Mi memory
2023-07-05 13:46:50.352308: Successfully ran: "cactus_analyseAssembly HG02257.2.sanitized.fa" in 1.6756 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:46:50: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 19 Total-length: 197346260 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28612791 Median-sequence-length: 4679916 Max-sequence-length: 51368877 Min-sequence-length: 36174

2023-07-05 13:46:50.357607: Successfully ran: "cactus_analyseAssembly HG01928.1.sanitized.fa" in 1.6783 seconds and 153.9 Mi memory
2023-07-05 13:46:50.364250: Successfully ran: "cactus_analyseAssembly HG01175.2.sanitized.fa" in 1.6915 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG00735.1: Input-sample: HG00735.1.sanitized.fa Total-sequences: 13 Total-length: 89316573 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 48576318 Median-sequence-length: 1250387 Max-sequence-length: 48576318 Min-sequence-length: 31443

2023-07-05 13:46:50.368621: Successfully ran: "cactus_analyseAssembly HG03540.2.sanitized.fa" in 1.6831 seconds and 153.9 Mi memory
2023-07-05 13:46:50.368907: Successfully ran: "cactus_analyseAssembly HG01361.1.sanitized.fa" in 1.6728 seconds and 153.9 Mi memory
2023-07-05 13:46:50.371689: Successfully ran: "cactus_analyseAssembly HG01106.1.sanitized.fa" in 1.688 seconds and 153.9 Mi memory
2023-07-05 13:46:50.376647: Successfully ran: "cactus_analyseAssembly HG03492.1.sanitized.fa" in 1.6355 seconds and 51.9 Mi memory
2023-07-05 13:46:50.377396: Successfully ran: "cactus_analyseAssembly HG02486.2.sanitized.fa" in 1.684 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:46:50: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 13171 Total-length: 94162145 Proportion-repeat-masked: 0.090614 ProportionNs: 0.090614 Total-Ns: 8532401 N50: 78858 Median-sequence-length: 93 Max-sequence-length: 10182336 Min-sequence-length: 1

2023-07-05 13:46:50.388003: Successfully ran: "cactus_analyseAssembly HG01891.2.sanitized.fa" in 1.6943 seconds and 153.9 Mi memory
2023-07-05 13:46:50.392096: Successfully ran: "cactus_analyseAssembly HG01978.2.sanitized.fa" in 1.6958 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 12 Total-length: 199322765 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36663492 Median-sequence-length: 13745682 Max-sequence-length: 42441562 Min-sequence-length: 1570073

2023-07-05 13:46:50.399465: Successfully ran: "cactus_analyseAssembly HG01952.2.sanitized.fa" in 1.693 seconds and 153.9 Mi memory
2023-07-05 13:46:50.403833: Successfully ran: "cactus_analyseAssembly HG02622.2.sanitized.fa" in 1.6982 seconds and 153.9 Mi memory
Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 12 Total-length: 93769038 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23107364 Median-sequence-length: 3098075 Max-sequence-length: 34368769 Min-sequence-length: 180281

Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 14 Total-length: 198891655 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37466503 Median-sequence-length: 12408663 Max-sequence-length: 51880165 Min-sequence-length: 59246

Got message from job at time 07-05-2023 13:46:50: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 17 Total-length: 197623075 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28178232 Median-sequence-length: 7138904 Max-sequence-length: 42847571 Min-sequence-length: 27683

Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 5 Total-length: 200439551 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 69987944 Median-sequence-length: 37674816 Max-sequence-length: 71444737 Min-sequence-length: 3667466

Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 9 Total-length: 199620487 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 105724286 Median-sequence-length: 274818 Max-sequence-length: 105724286 Min-sequence-length: 30826

Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 11 Total-length: 199755015 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30205297 Median-sequence-length: 16397609 Max-sequence-length: 52893636 Min-sequence-length: 481736

Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 15 Total-length: 87277425 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16468417 Median-sequence-length: 2013810 Max-sequence-length: 31430524 Min-sequence-length: 181091

Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 6 Total-length: 91838662 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24333169 Median-sequence-length: 18862470 Max-sequence-length: 32810484 Min-sequence-length: 673352

Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 12 Total-length: 91991399 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25171758 Median-sequence-length: 2516994 Max-sequence-length: 30288877 Min-sequence-length: 40300

Got message from job at time 07-05-2023 13:46:50: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 8 Total-length: 93249262 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 56189453 Median-sequence-length: 4609254 Max-sequence-length: 56189453 Min-sequence-length: 318299

2023-07-05 13:46:53.383887: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/GRCh38.fa HG00621.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG00621.1.fa HG00673.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG00673.1.fa HG00733.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG00733.1.fa HG01106.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01106.1.fa HG01106.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01106.2.fa HG01109.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01109.1.fa HG01243.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01243.1.fa HG01258.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01258.1.fa HG01358.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01358.1.fa HG01928.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01928.1.fa HG01952.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01952.1.fa HG02055.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG02055.1.fa HG02145.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG02145.1.fa HG02486.1 /da <...> 999ba98b3759d207/8c27/871f/tmpezqf6eap/Anc0.c2h.fa --outputReferenceFile /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chrY): Params file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/Anc0.config.xml
cactus_consolidated(chrY): Output file string : /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/Anc0.c2h
cactus_consolidated(chrY): Output hal fasta file string : /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/Anc0.c2h.fa
cactus_consolidated(chrY): Output reference fasta file string : /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/Anc0.ref
Issued job 'cactus_cons' kind-cactus_cons/instance-cs_3qlmb v1 with job batch system ID: 2676 and disk: 26.5 Gi, memory: 303.0 Gi, cores: 64, accelerators: [], preemptible: False
cactus_consolidated(chrY): Sequence files and events: GRCh38 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/GRCh38.fa HG00621.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG00621.1.fa HG00673.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG00673.1.fa HG00733.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG00733.1.fa HG01106.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01106.1.fa HG01106.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01106.2.fa HG01109.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01109.1.fa HG01243.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01243.1.fa HG01258.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01258.1.fa HG01358.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01358.1.fa HG01928.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01928.1.fa HG01952.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01952.1.fa HG02055.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG02055.1.fa HG02145.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG02145.1.fa HG02486.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG02486.1.fa HG02572.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG02572.1.fa HG02717.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG02717.1.fa HG03098.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG03098.1.fa HG03492.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG03492.1.fa HG03579.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG03579.1.fa CHM13 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/CHM13.fa _MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/_MINIGRAPH_.fa
cactus_consolidated(chrY): Alignments file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/Anc0_primary.paf
cactus_consolidated(chrY): Secondary alignments file: (null)
cactus_consolidated(chrY): Constraint alignments file: (null)
cactus_consolidated(chrY): Species tree: (GRCh38:0.025,HG00621.1:0.025,HG00673.1:0.025,HG00733.1:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01243.1:0.025,HG01258.1:0.025,HG01358.1:0.025,HG01928.1:0.025,HG01952.1:0.025,HG02055.1:0.025,HG02145.1:0.025,HG02486.1:0.025,HG02572.1:0.025,HG02717.1:0.025,HG03098.1:0.025,HG03492.1:0.025,HG03579.1:0.025,CHM13:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chrY): Outgroup events:
cactus_consolidated(chrY): Reference event: Anc0
cactus_consolidated(chrY): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chrY): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chrY): Constructed the first flower
Issued job 'cactus_cons' kind-cactus_cons/instance-z_f1u6nr v1 with job batch system ID: 2677 and disk: 58.1 Gi, memory: 476.8 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'export_vg' kind-export_vg/instance-c9s8tvux v1 with job batch system ID: 2678 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chrY): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG00621.1.fa to HG00621.1
cactus_consolidated(chrY): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG00621.1.fa
cactus_consolidated(chrY): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG00621.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrY): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG00673.1.fa to HG00673.1
cactus_consolidated(chrY): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG00673.1.fa
cactus_consolidated(chrY): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG00673.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrY): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG00733.1.fa to HG00733.1
cactus_consolidated(chrY): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG00733.1.fa
cactus_consolidated(chrY): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG00733.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrY): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01106.1.fa to HG01106.1
cactus_consolidated(chrY): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01106.1.fa
cactus_consolidated(chrY): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01106.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrY): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01106.2.fa to HG01106.2
cactus_consolidated(chrY): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01106.2.fa
cactus_consolidated(chrY): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrY): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01109.1.fa to HG01109.1
cactus_consolidated(chrY): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01109.1.fa
cactus_consolidated(chrY): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01109.1.fa is specified incomplete, the sequences will not be attached
Got message from job at time 07-05-2023 13:46:54: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 9 Total-length: 182352534 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 101973622 Median-sequence-length: 8414389 Max-sequence-length: 101973622 Min-sequence-length: 65245

cactus_consolidated(chrY): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01243.1.fa to HG01243.1
cactus_consolidated(chrY): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01243.1.fa
cactus_consolidated(chrY): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01243.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrY): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01258.1.fa to HG01258.1
cactus_consolidated(chrY): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01258.1.fa
cactus_consolidated(chrY): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01258.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrY): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01358.1.fa to HG01358.1
cactus_consolidated(chrY): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01358.1.fa
cactus_consolidated(chrY): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01358.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrY): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01928.1.fa to HG01928.1
cactus_consolidated(chrY): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01928.1.fa
cactus_consolidated(chrY): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01928.1.fa is specified incomplete, the sequences will not be attached
Got message from job at time 07-05-2023 13:46:55: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 7 Total-length: 180068918 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41947810 Median-sequence-length: 13781253 Max-sequence-length: 82886352 Min-sequence-length: 390020

cactus_consolidated(chrY): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01952.1.fa to HG01952.1
cactus_consolidated(chrY): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01952.1.fa
cactus_consolidated(chrY): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01952.1.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:46:55.426727: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/d013/1228/tmpbxsma6rd/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p"
2023-07-05 13:46:55.426832: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/da1a/4b27/tmppqwi25nr/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p"
2023-07-05 13:46:55.429074: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/418b/84dd/tmpzihpj30a/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p"
2023-07-05 13:46:55.429398: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/f415/99a2/tmp34wpk6gb/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p"
2023-07-05 13:46:55.430086: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/48ec/495a/tmpwf38i_s6/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p"
2023-07-05 13:46:55.433522: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/8b64/0929/tmpq7jlyp6y/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p"
2023-07-05 13:46:55.433704: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/fed6/1f7c/tmp_wx1rexs/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p"
2023-07-05 13:46:55.435948: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/a08e/4194/tmphb2xgyci/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p"
2023-07-05 13:46:55.438597: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/45f9/c004/tmpazczr2vk/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p"
2023-07-05 13:46:55.438679: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/1466/8204/tmpbsr0mmg2/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p"
2023-07-05 13:46:55.443310: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/5cb7/39c8/tmppfjj8cg4/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p"
2023-07-05 13:46:55.448053: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/347a/e3ba/tmpi7j85fvi/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p"
cactus_consolidated(chrY): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG02055.1.fa to HG02055.1
cactus_consolidated(chrY): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG02055.1.fa
cactus_consolidated(chrY): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG02055.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrY): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG02145.1.fa to HG02145.1
cactus_consolidated(chrY): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG02145.1.fa
cactus_consolidated(chrY): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG02145.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrY): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG02486.1.fa to HG02486.1
cactus_consolidated(chrY): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG02486.1.fa
cactus_consolidated(chrY): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG02486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrY): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG02572.1.fa to HG02572.1
cactus_consolidated(chrY): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG02572.1.fa
cactus_consolidated(chrY): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG02572.1.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:46:56.171006: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/d013/1228/tmpbxsma6rd/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p'" in 0.743 seconds and 51.9 Mi memory
2023-07-05 13:46:56.175354: Running the command: "cactus_analyseAssembly HG03540.2.sanitized.fa"
2023-07-05 13:46:56.184829: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/da1a/4b27/tmppqwi25nr/HG02486.2.fa | cactus_sanitizeFastaHeaders - HG02486.2 -p'" in 0.7568 seconds and 17.9 Mi memory
2023-07-05 13:46:56.189069: Running the command: "cactus_analyseAssembly HG02486.2.sanitized.fa"
cactus_consolidated(chrY): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG02717.1.fa to HG02717.1
cactus_consolidated(chrY): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG02717.1.fa
cactus_consolidated(chrY): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG02717.1.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:46:56.197991: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/f415/99a2/tmp34wpk6gb/HG01258.2.fa | cactus_sanitizeFastaHeaders - HG01258.2 -p'" in 0.7674 seconds and 17.9 Mi memory
2023-07-05 13:46:56.199841: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/8b64/0929/tmpq7jlyp6y/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p'" in 0.7651 seconds and 25.1 Mi memory
2023-07-05 13:46:56.202355: Running the command: "cactus_analyseAssembly HG01258.2.sanitized.fa"
2023-07-05 13:46:56.204196: Running the command: "cactus_analyseAssembly HG01243.2.sanitized.fa"
2023-07-05 13:46:56.204424: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/48ec/495a/tmpwf38i_s6/HG00741.1.fa | cactus_sanitizeFastaHeaders - HG00741.1 -p'" in 0.7734 seconds and 51.9 Mi memory
2023-07-05 13:46:56.205565: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/a08e/4194/tmphb2xgyci/HG01361.2.fa | cactus_sanitizeFastaHeaders - HG01361.2 -p'" in 0.7685 seconds and 51.9 Mi memory
2023-07-05 13:46:56.208784: Running the command: "cactus_analyseAssembly HG00741.1.sanitized.fa"
2023-07-05 13:46:56.210010: Running the command: "cactus_analyseAssembly HG01361.2.sanitized.fa"
2023-07-05 13:46:56.231818: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/45f9/c004/tmpazczr2vk/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p'" in 0.7922 seconds and 51.9 Mi memory
2023-07-05 13:46:56.235900: Running the command: "cactus_analyseAssembly HG01891.1.sanitized.fa"
2023-07-05 13:46:56.235980: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/1466/8204/tmpbsr0mmg2/HG01071.2.fa | cactus_sanitizeFastaHeaders - HG01071.2 -p'" in 0.7963 seconds and 51.9 Mi memory
2023-07-05 13:46:56.238316: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/418b/84dd/tmpzihpj30a/HG00733.2.fa | cactus_sanitizeFastaHeaders - HG00733.2 -p'" in 0.8081 seconds and 51.9 Mi memory
2023-07-05 13:46:56.240486: Running the command: "cactus_analyseAssembly HG01071.2.sanitized.fa"
2023-07-05 13:46:56.242838: Running the command: "cactus_analyseAssembly HG00733.2.sanitized.fa"
2023-07-05 13:46:56.253506: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/fed6/1f7c/tmp_wx1rexs/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 0.8188 seconds and 68.3 Mi memory
2023-07-05 13:46:56.257399: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
2023-07-05 13:46:56.300139: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/5cb7/39c8/tmppfjj8cg4/HG00741.2.fa | cactus_sanitizeFastaHeaders - HG00741.2 -p'" in 0.8558 seconds and 51.9 Mi memory
2023-07-05 13:46:56.304359: Running the command: "cactus_analyseAssembly HG00741.2.sanitized.fa"
2023-07-05 13:46:56.344160: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/0a9f88a4b0315a71bc09997943db6609/347a/e3ba/tmpi7j85fvi/HG01071.1.fa | cactus_sanitizeFastaHeaders - HG01071.1 -p'" in 0.8951 seconds and 61.5 Mi memory
2023-07-05 13:46:56.348454: Running the command: "cactus_analyseAssembly HG01071.1.sanitized.fa"
cactus_consolidated(chrY): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG03098.1.fa to HG03098.1
cactus_consolidated(chrY): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG03098.1.fa
cactus_consolidated(chrY): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG03098.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrY): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG03492.1.fa to HG03492.1
cactus_consolidated(chrY): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG03492.1.fa
cactus_consolidated(chrY): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG03492.1.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:46:56.726298: Successfully ran: "cactus_analyseAssembly HG03540.2.sanitized.fa" in 0.5501 seconds and 51.9 Mi memory
2023-07-05 13:46:56.733350: Successfully ran: "cactus_analyseAssembly HG02486.2.sanitized.fa" in 0.5435 seconds and 17.8 Mi memory
cactus_consolidated(chrY): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG03579.1.fa to HG03579.1
cactus_consolidated(chrY): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG03579.1.fa
cactus_consolidated(chrY): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG03579.1.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:46:56.749436: Successfully ran: "cactus_analyseAssembly HG01258.2.sanitized.fa" in 0.5463 seconds and 17.8 Mi memory
2023-07-05 13:46:56.759438: Successfully ran: "cactus_analyseAssembly HG01243.2.sanitized.fa" in 0.5543 seconds and 25.0 Mi memory
2023-07-05 13:46:56.782146: Successfully ran: "cactus_analyseAssembly HG00741.1.sanitized.fa" in 0.5726 seconds and 51.9 Mi memory
2023-07-05 13:46:56.782378: Successfully ran: "cactus_analyseAssembly HG01361.2.sanitized.fa" in 0.5716 seconds and 51.9 Mi memory
2023-07-05 13:46:56.801909: Successfully ran: "cactus_analyseAssembly HG00733.2.sanitized.fa" in 0.5583 seconds and 51.9 Mi memory
2023-07-05 13:46:56.813414: Successfully ran: "cactus_analyseAssembly HG01891.1.sanitized.fa" in 0.5768 seconds and 51.9 Mi memory
2023-07-05 13:46:56.827458: Successfully ran: "cactus_analyseAssembly HG01071.2.sanitized.fa" in 0.5862 seconds and 51.9 Mi memory
2023-07-05 13:46:56.850381: Successfully ran: "cactus_analyseAssembly HG02080.2.sanitized.fa" in 0.5922 seconds and 68.4 Mi memory
2023-07-05 13:46:56.907627: Successfully ran: "cactus_analyseAssembly HG00741.2.sanitized.fa" in 0.6026 seconds and 51.9 Mi memory
cactus_consolidated(chrY): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/CHM13.fa to CHM13
cactus_consolidated(chrY): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/CHM13.fa
cactus_consolidated(chrY): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/CHM13.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:46:56.985828: Successfully ran: "cactus_analyseAssembly HG01071.1.sanitized.fa" in 0.6366 seconds and 61.4 Mi memory
cactus_consolidated(chrY): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/_MINIGRAPH_.fa to _MINIGRAPH_
cactus_consolidated(chrY): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/_MINIGRAPH_.fa
cactus_consolidated(chrY): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrY): Constructed the initial flower with 1921 sequences and 24 events with string: ((GRCh38:0.025,HG00621.1:0.025,HG00673.1:0.025,HG00733.1:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01243.1:0.025,HG01258.1:0.025,HG01358.1:0.025,HG01928.1:0.025,HG01952.1:0.025,HG02055.1:0.025,HG02145.1:0.025,HG02486.1:0.025,HG02572.1:0.025,HG02717.1:0.025,HG03098.1:0.025,HG03492.1:0.025,HG03579.1:0.025,CHM13:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chrY): Established the first Flower in the hierarchy, 4 seconds have elapsed
cactus_consolidated(chrY): Converted alignment coordinates, 4 seconds have elapsed
cactus_consolidated(chrY): Stripped any unique IDs, 4 seconds have elapsed
cactus_consolidated(chrY): We found a max path distance between ingroups in the tree (((GRCh38:0.025,HG00621.1:0.025,HG00673.1:0.025,HG00733.1:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01243.1:0.025,HG01258.1:0.025,HG01358.1:0.025,HG01928.1:0.025,HG01952.1:0.025,HG02055.1:0.025,HG02145.1:0.025,HG02486.1:0.025,HG02572.1:0.025,HG02717.1:0.025,HG03098.1:0.025,HG03492.1:0.025,HG03579.1:0.025,CHM13:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;) of 0.050000, giving us and min final chain length of: 2048
cactus_consolidated(chrY): Starting annealing round with a minimum chain length of 2048 and an alignment trim of 3
cactus_consolidated(chrY): Sequence graph statistics after annealing:
cactus_consolidated(chrY): There were 41524 blocks in the sequence graph, representing 437280828 total aligned bases
cactus_consolidated(chrY): Block degree stats: min 1, avg 14.018182, median 16, max 25
cactus_consolidated(chrY): Block support stats: min 0.000000, avg 0.075483, median 0.055556, max 0.500000
cactus_consolidated(chrY): Starting melting round with a minimum chain length of 2
cactus_consolidated(chrY): A melting round is destroying 3251 blocks with an average degree of 13.724700 from chains with length less than 2. Total aligned bases lost: 44619
cactus_consolidated(chrY): Starting melting round with a minimum chain length of 32
cactus_consolidated(chrY): A melting round is destroying 19487 blocks with an average degree of 14.450659 from chains with length less than 32. Total aligned bases lost: 1657845
cactus_consolidated(chrY): Starting melting round with a minimum chain length of 512
cactus_consolidated(chrY): A melting round is destroying 1011 blocks with an average degree of 10.660732 from chains with length less than 512. Total aligned bases lost: 1009626
cactus_consolidated(chrY): A melting round is destroying 526 blocks with an average degree of 13.233840 from chains with length less than 2048. Total aligned bases lost: 1710301
Got message from job at time 07-05-2023 13:47:00: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 12 Total-length: 159981006 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34412626 Median-sequence-length: 4775890 Max-sequence-length: 55319729 Min-sequence-length: 25795

Got message from job at time 07-05-2023 13:47:00: Assembly stats for HG02622.1: Input-sample: HG02622.1.sanitized.fa Total-sequences: 8 Total-length: 161621107 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 27 N50: 86391354 Median-sequence-length: 4658987 Max-sequence-length: 86391354 Min-sequence-length: 71569

cactus_consolidated(chrY): Destroying 369 recoverable blocks
cactus_consolidated(chrY): The blocks covered 145810 columns for a total of 2509289 aligned bases
Got message from job at time 07-05-2023 13:47:01: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 8 Total-length: 160868425 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 80793603 Median-sequence-length: 6302680 Max-sequence-length: 80793603 Min-sequence-length: 42776

cactus_consolidated(chrY): Destroying 0 recoverable blocks
cactus_consolidated(chrY): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chrY): Sequence graph statistics after melting:
cactus_consolidated(chrY): There were 15017 blocks in the sequence graph, representing 428173441 total aligned bases
cactus_consolidated(chrY): Block degree stats: min 1, avg 13.172671, median 18, max 25
cactus_consolidated(chrY): Block support stats: min 0.000000, avg 0.050652, median 0.050000, max 0.500000
cactus_consolidated(chrY): Attaching the sequence to the cactus root 26, header chrY with length 57227415 and 23387089 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrY): Attaching the sequence to the cactus root 1100, header s188024 with length 405906 and 2 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrY): Ran cactus caf, 11 seconds have elapsed
cactus_consolidated(chrY): Ran extended flowers ready for bar, 12 seconds have elapsed
Got message from job at time 07-05-2023 13:47:08: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 16 Total-length: 87192377 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14342055 Median-sequence-length: 2941066 Max-sequence-length: 17176409 Min-sequence-length: 75565

Got message from job at time 07-05-2023 13:47:08: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 9 Total-length: 93247365 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14738440 Median-sequence-length: 4519718 Max-sequence-length: 41984044 Min-sequence-length: 202328

Got message from job at time 07-05-2023 13:47:08: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 11 Total-length: 88494545 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15382754 Median-sequence-length: 5327804 Max-sequence-length: 33360703 Min-sequence-length: 743080

Got message from job at time 07-05-2023 13:47:08: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 6 Total-length: 83281705 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52426522 Median-sequence-length: 4461930 Max-sequence-length: 52426522 Min-sequence-length: 113411

Got message from job at time 07-05-2023 13:47:08: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 6 Total-length: 84541193 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24426139 Median-sequence-length: 18844506 Max-sequence-length: 30474809 Min-sequence-length: 117256

Got message from job at time 07-05-2023 13:47:08: Assembly stats for HG00741.1: Input-sample: HG00741.1.sanitized.fa Total-sequences: 14 Total-length: 88241955 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18922156 Median-sequence-length: 1937781 Max-sequence-length: 38003676 Min-sequence-length: 49085

Got message from job at time 07-05-2023 13:47:08: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 11 Total-length: 89285726 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 21925294 Median-sequence-length: 2550689 Max-sequence-length: 33373848 Min-sequence-length: 18768

Got message from job at time 07-05-2023 13:47:08: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 6 Total-length: 87959233 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18235568 Median-sequence-length: 18235568 Max-sequence-length: 25156488 Min-sequence-length: 6138355

Got message from job at time 07-05-2023 13:47:08: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 5 Total-length: 89683449 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 70779753 Median-sequence-length: 1564124 Max-sequence-length: 70779753 Min-sequence-length: 976456

Got message from job at time 07-05-2023 13:47:08: Assembly stats for HG01071.1: Input-sample: HG01071.1.sanitized.fa Total-sequences: 15 Total-length: 97792758 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 63379971 Median-sequence-length: 220040 Max-sequence-length: 63379971 Min-sequence-length: 27285

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 15 Total-length: 245359826 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35312722 Median-sequence-length: 11702041 Max-sequence-length: 46298529 Min-sequence-length: 85590

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 11 Total-length: 241625627 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 66312222 Median-sequence-length: 15207792 Max-sequence-length: 77444088 Min-sequence-length: 385310

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 20 Total-length: 246479077 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 59303879 Median-sequence-length: 3607187 Max-sequence-length: 74715163 Min-sequence-length: 56025

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 11 Total-length: 246356194 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 78215333 Median-sequence-length: 2210313 Max-sequence-length: 79618685 Min-sequence-length: 100588

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 13 Total-length: 232039509 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 53870542 Median-sequence-length: 4843260 Max-sequence-length: 70436051 Min-sequence-length: 131306

Estimating cactus_consolidated(chr9) memory as 476.8 Gi from 91 sequences with total-sequence-size 11.4 Gi and paf-size 202683645 using <conslidatedMemory> configuration settings
Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 15 Total-length: 97695784 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 13284859 Median-sequence-length: 5124121 Max-sequence-length: 22202528 Min-sequence-length: 27615

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 19 Total-length: 233637787 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34843785 Median-sequence-length: 3439116 Max-sequence-length: 71661214 Min-sequence-length: 21398

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 13 Total-length: 236256743 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 120719471 Median-sequence-length: 3459238 Max-sequence-length: 120719471 Min-sequence-length: 68896

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 14 Total-length: 86566942 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12877274 Median-sequence-length: 3971916 Max-sequence-length: 17606397 Min-sequence-length: 91635

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 11 Total-length: 248256540 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 63387526 Median-sequence-length: 2681774 Max-sequence-length: 120868360 Min-sequence-length: 178645

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 16 Total-length: 234017536 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 67266208 Median-sequence-length: 3753766 Max-sequence-length: 72521452 Min-sequence-length: 52253

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 11 Total-length: 246994332 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35448245 Median-sequence-length: 17181253 Max-sequence-length: 70486091 Min-sequence-length: 40947

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 26 Total-length: 241670023 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 21416256 Median-sequence-length: 4225705 Max-sequence-length: 46896479 Min-sequence-length: 16754

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 22 Total-length: 237479833 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23176578 Median-sequence-length: 5491805 Max-sequence-length: 74590743 Min-sequence-length: 33823

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 16 Total-length: 239772785 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 46263534 Median-sequence-length: 3698064 Max-sequence-length: 79572948 Min-sequence-length: 54371

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 18 Total-length: 241525048 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26698468 Median-sequence-length: 17205036 Max-sequence-length: 34831274 Min-sequence-length: 17529

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG00735.1: Input-sample: HG00735.1.sanitized.fa Total-sequences: 5 Total-length: 97048227 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29070980 Median-sequence-length: 27220700 Max-sequence-length: 39856338 Min-sequence-length: 354225

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 14 Total-length: 249632597 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35984969 Median-sequence-length: 7865657 Max-sequence-length: 108971525 Min-sequence-length: 24605

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 13 Total-length: 247485330 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35289887 Median-sequence-length: 14972425 Max-sequence-length: 60069425 Min-sequence-length: 874759

Got message from job at time 07-05-2023 13:47:09: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 17 Total-length: 248774734 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33495741 Median-sequence-length: 3848317 Max-sequence-length: 92880013 Min-sequence-length: 322414

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 6 Total-length: 96759093 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27571623 Median-sequence-length: 22581549 Max-sequence-length: 28098476 Min-sequence-length: 1500419

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 3 Total-length: 103772132 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 57159289 Median-sequence-length: 46574680 Max-sequence-length: 57159289 Min-sequence-length: 38163

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 21 Total-length: 230955494 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25843251 Median-sequence-length: 5368932 Max-sequence-length: 77217560 Min-sequence-length: 16079

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 20 Total-length: 249406396 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34848115 Median-sequence-length: 7628052 Max-sequence-length: 60140334 Min-sequence-length: 25810

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 9 Total-length: 243814245 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 70439085 Median-sequence-length: 14927094 Max-sequence-length: 80536121 Min-sequence-length: 125476

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 16 Total-length: 241410808 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44971586 Median-sequence-length: 4688890 Max-sequence-length: 67195217 Min-sequence-length: 361912

Got message from job at time 07-05-2023 13:47:09: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 30894 Total-length: 261610911 Proportion-repeat-masked: 0.070431 ProportionNs: 0.070431 Total-Ns: 18425408 N50: 89081 Median-sequence-length: 113 Max-sequence-length: 18143921 Min-sequence-length: 1

Got message from job at time 07-05-2023 13:47:09: Assembly stats for NA18906.1: Input-sample: NA18906.1.sanitized.fa Total-sequences: 7 Total-length: 102666978 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24526744 Median-sequence-length: 11282121 Max-sequence-length: 34141017 Min-sequence-length: 56951

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 2 Total-length: 108105796 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 107746848 Median-sequence-length: 107746848 Max-sequence-length: 107746848 Min-sequence-length: 358948

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 13 Total-length: 230418639 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 63282987 Median-sequence-length: 6357724 Max-sequence-length: 77343737 Min-sequence-length: 927779

Got message from job at time 07-05-2023 13:47:09: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 18 Total-length: 243413210 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34842206 Median-sequence-length: 7247695 Max-sequence-length: 46348975 Min-sequence-length: 849970

Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 13 Total-length: 89831329 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 50750055 Median-sequence-length: 1187273 Max-sequence-length: 50750055 Min-sequence-length: 58448

Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 17 Total-length: 243094656 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31302827 Median-sequence-length: 6636928 Max-sequence-length: 81481867 Min-sequence-length: 33014

Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 5 Total-length: 103795659 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26259229 Median-sequence-length: 19147898 Max-sequence-length: 27577552 Min-sequence-length: 12448483

Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 6 Total-length: 98005362 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 56661561 Median-sequence-length: 351721 Max-sequence-length: 56661561 Min-sequence-length: 33539

Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 13 Total-length: 230469663 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 71857533 Median-sequence-length: 2586890 Max-sequence-length: 82455832 Min-sequence-length: 44183

Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 19 Total-length: 241073929 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 59288946 Median-sequence-length: 914377 Max-sequence-length: 79430282 Min-sequence-length: 21289

Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 6 Total-length: 85085714 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52357114 Median-sequence-length: 8833771 Max-sequence-length: 52357114 Min-sequence-length: 2545674

Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 17 Total-length: 249514648 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36011619 Median-sequence-length: 3436194 Max-sequence-length: 70401023 Min-sequence-length: 25457

Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 5 Total-length: 97562358 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18304638 Median-sequence-length: 14329238 Max-sequence-length: 41333118 Min-sequence-length: 10313507

Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 11 Total-length: 241939101 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 66462704 Median-sequence-length: 12381269 Max-sequence-length: 71922942 Min-sequence-length: 871339

Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 14 Total-length: 234124271 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 71374966 Median-sequence-length: 2259242 Max-sequence-length: 78363690 Min-sequence-length: 39081

Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 15 Total-length: 245521796 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 59378398 Median-sequence-length: 4220550 Max-sequence-length: 87875449 Min-sequence-length: 589692

Got message from job at time 07-05-2023 13:47:10: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 99753195 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 99753195 Median-sequence-length: 99753195 Max-sequence-length: 99753195 Min-sequence-length: 99753195

Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 15 Total-length: 246310999 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29952225 Median-sequence-length: 8930212 Max-sequence-length: 64515269 Min-sequence-length: 18650

Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 12 Total-length: 229643550 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 64829178 Median-sequence-length: 18203926 Max-sequence-length: 67159412 Min-sequence-length: 32167

Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 37 Total-length: 241662032 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14927820 Median-sequence-length: 2554685 Max-sequence-length: 47438595 Min-sequence-length: 106985

Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 17 Total-length: 237986718 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25585860 Median-sequence-length: 13972951 Max-sequence-length: 42391129 Min-sequence-length: 863844

Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 18 Total-length: 238338464 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23126947 Median-sequence-length: 16579134 Max-sequence-length: 42752125 Min-sequence-length: 104553

Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 6 Total-length: 85625802 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 47959429 Median-sequence-length: 11010271 Max-sequence-length: 47959429 Min-sequence-length: 1582664

Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG03540.1: Input-sample: HG03540.1.sanitized.fa Total-sequences: 19 Total-length: 241552167 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26131078 Median-sequence-length: 7854039 Max-sequence-length: 46637263 Min-sequence-length: 27037

Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 10 Total-length: 99101019 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 53025446 Median-sequence-length: 1045121 Max-sequence-length: 53025446 Min-sequence-length: 45449

Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 14 Total-length: 227393828 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18161674 Median-sequence-length: 13488706 Max-sequence-length: 64490822 Min-sequence-length: 873983

Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 5 Total-length: 97522574 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27574665 Median-sequence-length: 22369917 Max-sequence-length: 40732063 Min-sequence-length: 518254

Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-1f2sv0qr v1 with job batch system ID: 2679 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 16 Total-length: 252970258 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 70575375 Median-sequence-length: 5173508 Max-sequence-length: 88128668 Min-sequence-length: 26812

Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 12 Total-length: 248012142 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 58129271 Median-sequence-length: 8104210 Max-sequence-length: 81017584 Min-sequence-length: 27552

cactus_consolidated(chrOther): Ran cactus bar (use poa:1), 32 seconds have elapsed
cactus_consolidated(chrOther): There are 7 layers in the flowers hierarchy
cactus_consolidated(chrOther): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chrOther): Chose reference event 2: Anc0
cactus_consolidated(chrOther): For flower: 0 we have 11 nodes for: 11306 ends, 1167 chains, 4 stubs and 3161 blocks
cactus_consolidated(chrOther): Building a matching for 4 stub nodes in the top level problem from 4984 total stubs of which 2322 attached , 11306 total ends, 1167 chains, 3161 blocks 4318 groups and 2492 sequences
cactus_consolidated(chrOther): Starting to build the reference for flower 0, with 2 stubs and 7 chains and 11 nodes in the flowers tangle
cactus_consolidated(chrOther): The score of the initial solution is 1509501659.390119/2 out of a max possible 1782937781.721920
cactus_consolidated(chrOther): The score of the solution after permutation sampling is 1509501659.390119/2 after 10 rounds of greedy permutation out of a max possible 1782937781.721920
Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 14 Total-length: 246014310 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 126179222 Median-sequence-length: 2840844 Max-sequence-length: 126179222 Min-sequence-length: 40270

cactus_consolidated(chrOther): The score of the final reference solution is 1509501659.390119/2 after 100 rounds of greedy nudging out of a max possible 1782937781.721920
cactus_consolidated(chrOther): In the 1 layer there are 4318 flowers in the flowers hierarchy
cactus_consolidated(chrOther): In the 2 layer there are 3290 flowers in the flowers hierarchy
Got message from job at time 07-05-2023 13:47:10: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 18 Total-length: 233671693 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34904847 Median-sequence-length: 7825684 Max-sequence-length: 43981894 Min-sequence-length: 26387

cactus_consolidated(chrOther): In the 3 layer there are 1091 flowers in the flowers hierarchy
cactus_consolidated(chrOther): In the 4 layer there are 303 flowers in the flowers hierarchy
cactus_consolidated(chrOther): In the 5 layer there are 26 flowers in the flowers hierarchy
cactus_consolidated(chrOther): In the 6 layer there are 2 flowers in the flowers hierarchy
cactus_consolidated(chrOther): Ran cactus make reference, 33 seconds have elapsed
Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 11 Total-length: 100336593 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 13290282 Median-sequence-length: 9912585 Max-sequence-length: 17646829 Min-sequence-length: 521651

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 9 Total-length: 243419540 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 67035706 Median-sequence-length: 1580091 Max-sequence-length: 104101292 Min-sequence-length: 38325

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 7 Total-length: 100112992 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31171479 Median-sequence-length: 264880 Max-sequence-length: 41284156 Min-sequence-length: 26089

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 11 Total-length: 102356690 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17992257 Median-sequence-length: 7203935 Max-sequence-length: 27204768 Min-sequence-length: 351606

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 19 Total-length: 234764159 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25959350 Median-sequence-length: 5457157 Max-sequence-length: 66218776 Min-sequence-length: 217505

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 12 Total-length: 243878013 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 132633355 Median-sequence-length: 6030150 Max-sequence-length: 132633355 Min-sequence-length: 20586

Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-d3ixj2s2 v1 with job batch system ID: 2680 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 5 Total-length: 97383567 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34106154 Median-sequence-length: 13948225 Max-sequence-length: 42859481 Min-sequence-length: 357528

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 10 Total-length: 249942296 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 46100459 Median-sequence-length: 28074679 Max-sequence-length: 60013802 Min-sequence-length: 859247

Got message from job at time 07-05-2023 13:47:11: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 20 Total-length: 237677950 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31069701 Median-sequence-length: 4664633 Max-sequence-length: 70476909 Min-sequence-length: 35057

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 16 Total-length: 246435711 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42603145 Median-sequence-length: 3497091 Max-sequence-length: 92753964 Min-sequence-length: 101011

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 13 Total-length: 231195760 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44613496 Median-sequence-length: 3459659 Max-sequence-length: 93682658 Min-sequence-length: 871744

Got message from job at time 07-05-2023 13:47:11: Assembly stats for NA20129.1: Input-sample: NA20129.1.sanitized.fa Total-sequences: 17 Total-length: 239950469 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35611409 Median-sequence-length: 5125731 Max-sequence-length: 46254121 Min-sequence-length: 17829

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 16 Total-length: 239810613 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34842771 Median-sequence-length: 6116591 Max-sequence-length: 67241394 Min-sequence-length: 39903

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 5 Total-length: 97536784 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27586891 Median-sequence-length: 23697465 Max-sequence-length: 29572282 Min-sequence-length: 933174

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 22 Total-length: 245307070 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30391630 Median-sequence-length: 3529409 Max-sequence-length: 79677417 Min-sequence-length: 24888

Got message from job at time 07-05-2023 13:47:11: Assembly stats for NA18906.1: Input-sample: NA18906.1.sanitized.fa Total-sequences: 15 Total-length: 250396365 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 70508090 Median-sequence-length: 2378651 Max-sequence-length: 74184148 Min-sequence-length: 448670

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 14 Total-length: 233179001 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 74728436 Median-sequence-length: 4348874 Max-sequence-length: 79581395 Min-sequence-length: 683971

Got message from job at time 07-05-2023 13:47:11: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 24 Total-length: 228815743 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18773208 Median-sequence-length: 5276652 Max-sequence-length: 44006963 Min-sequence-length: 21670

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG00741.1: Input-sample: HG00741.1.sanitized.fa Total-sequences: 12 Total-length: 240387754 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 66026139 Median-sequence-length: 3399986 Max-sequence-length: 70873776 Min-sequence-length: 23934

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 8 Total-length: 244841399 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 85827105 Median-sequence-length: 15935645 Max-sequence-length: 89211399 Min-sequence-length: 41056

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 22 Total-length: 229648406 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20993479 Median-sequence-length: 7903922 Max-sequence-length: 46269361 Min-sequence-length: 22385

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 23 Total-length: 237012193 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19096515 Median-sequence-length: 8929548 Max-sequence-length: 29368293 Min-sequence-length: 24391

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 15 Total-length: 240924518 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42227865 Median-sequence-length: 3191627 Max-sequence-length: 73274481 Min-sequence-length: 94106

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 22 Total-length: 230741927 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35303884 Median-sequence-length: 4230319 Max-sequence-length: 59380230 Min-sequence-length: 214116

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 6 Total-length: 101078613 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30105732 Median-sequence-length: 14303265 Max-sequence-length: 42887481 Min-sequence-length: 403537

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 7 Total-length: 96919961 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39538884 Median-sequence-length: 2837380 Max-sequence-length: 42919445 Min-sequence-length: 176520

Got message from job at time 07-05-2023 13:47:11: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 15 Total-length: 238400996 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51408705 Median-sequence-length: 6311489 Max-sequence-length: 96357670 Min-sequence-length: 34519

Got message from job at time 07-05-2023 13:47:11: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 13024 Total-length: 116197635 Proportion-repeat-masked: 0.140977 ProportionNs: 0.140977 Total-Ns: 16381200 N50: 93625 Median-sequence-length: 87 Max-sequence-length: 16164866 Min-sequence-length: 1

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 4 Total-length: 102898359 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42830384 Median-sequence-length: 42830384 Max-sequence-length: 45775646 Min-sequence-length: 899133

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 11 Total-length: 101420129 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23522349 Median-sequence-length: 5052957 Max-sequence-length: 35633663 Min-sequence-length: 32981

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG00735.1: Input-sample: HG00735.1.sanitized.fa Total-sequences: 10 Total-length: 249064414 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 159639682 Median-sequence-length: 3230066 Max-sequence-length: 159639682 Min-sequence-length: 26996

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 14 Total-length: 249539330 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30317358 Median-sequence-length: 16682218 Max-sequence-length: 66830386 Min-sequence-length: 63673

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 3 Total-length: 96902276 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29050304 Median-sequence-length: 29050304 Max-sequence-length: 39739573 Min-sequence-length: 28112399

Got message from job at time 07-05-2023 13:47:11: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 3 Total-length: 102264241 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 87960156 Median-sequence-length: 14282540 Max-sequence-length: 87960156 Min-sequence-length: 21545

Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-ojo0xjus v1 with job batch system ID: 2681 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:47:13: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 18653 Total-length: 201824150 Proportion-repeat-masked: 0.000968 ProportionNs: 0.000968 Total-Ns: 195417 N50: 87939 Median-sequence-length: 114 Max-sequence-length: 2165765 Min-sequence-length: 1

Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-q5jk7bh7 v1 with job batch system ID: 2682 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:47:13: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 7 Total-length: 198111636 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 55825194 Median-sequence-length: 19424450 Max-sequence-length: 71479148 Min-sequence-length: 35075

Got message from job at time 07-05-2023 13:47:13: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 5 Total-length: 200629158 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 92310948 Median-sequence-length: 12387089 Max-sequence-length: 93836353 Min-sequence-length: 524122

Got message from job at time 07-05-2023 13:47:13: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 9 Total-length: 198662291 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51674934 Median-sequence-length: 17091660 Max-sequence-length: 57738737 Min-sequence-length: 398238

Got message from job at time 07-05-2023 13:47:13: Assembly stats for HG00735.1: Input-sample: HG00735.1.sanitized.fa Total-sequences: 6 Total-length: 203195719 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 109520770 Median-sequence-length: 18804035 Max-sequence-length: 109520770 Min-sequence-length: 1558895

Got message from job at time 07-05-2023 13:47:13: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 4 Total-length: 202413356 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 92459998 Median-sequence-length: 92459998 Max-sequence-length: 95980912 Min-sequence-length: 34242

Got message from job at time 07-05-2023 13:47:13: Assembly stats for HG01071.1: Input-sample: HG01071.1.sanitized.fa Total-sequences: 4 Total-length: 199593533 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 63916678 Median-sequence-length: 63916678 Max-sequence-length: 92587622 Min-sequence-length: 2474883

Got message from job at time 07-05-2023 13:47:13: Assembly stats for NA20129.1: Input-sample: NA20129.1.sanitized.fa Total-sequences: 13 Total-length: 196750515 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23549959 Median-sequence-length: 11788098 Max-sequence-length: 52767930 Min-sequence-length: 1447041

Got message from job at time 07-05-2023 13:47:13: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 4 Total-length: 201106769 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 92095087 Median-sequence-length: 92095087 Max-sequence-length: 94947608 Min-sequence-length: 1560091

Issued job 'cactus_cons' kind-cactus_cons/instance-2hld0ykm v1 with job batch system ID: 2683 and disk: 57.5 Gi, memory: 476.8 Gi, cores: 64, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:47:13: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 2 Total-length: 201160620 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 108410903 Median-sequence-length: 108410903 Max-sequence-length: 108410903 Min-sequence-length: 92749717

Got message from job at time 07-05-2023 13:47:13: Assembly stats for HG00741.1: Input-sample: HG00741.1.sanitized.fa Total-sequences: 8 Total-length: 200342658 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51040418 Median-sequence-length: 12305468 Max-sequence-length: 92973688 Min-sequence-length: 32060

Got message from job at time 07-05-2023 13:47:13: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 7 Total-length: 202058236 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51104611 Median-sequence-length: 12284916 Max-sequence-length: 92580706 Min-sequence-length: 78685

Got message from job at time 07-05-2023 13:47:13: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 2 Total-length: 201803522 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 108536605 Median-sequence-length: 108536605 Max-sequence-length: 108536605 Min-sequence-length: 93266917

Got message from job at time 07-05-2023 13:47:13: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 11 Total-length: 201661538 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51025902 Median-sequence-length: 7136849 Max-sequence-length: 73603212 Min-sequence-length: 43122

Got message from job at time 07-05-2023 13:47:13: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 8 Total-length: 196976464 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34323219 Median-sequence-length: 31680828 Max-sequence-length: 52562545 Min-sequence-length: 714299

Got message from job at time 07-05-2023 13:47:13: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 10 Total-length: 200019287 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37368703 Median-sequence-length: 16127721 Max-sequence-length: 42744650 Min-sequence-length: 1447682

Got message from job at time 07-05-2023 13:47:13: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 10 Total-length: 200745262 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32266677 Median-sequence-length: 20855271 Max-sequence-length: 70773332 Min-sequence-length: 19435

Got message from job at time 07-05-2023 13:47:13: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 3 Total-length: 203580284 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 109697318 Median-sequence-length: 92296929 Max-sequence-length: 109697318 Min-sequence-length: 1586037

Got message from job at time 07-05-2023 13:47:13: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 9 Total-length: 201905353 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51388019 Median-sequence-length: 15602436 Max-sequence-length: 52594082 Min-sequence-length: 518256

Got message from job at time 07-05-2023 13:47:13: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 7 Total-length: 199422688 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 38752275 Median-sequence-length: 13734821 Max-sequence-length: 92023454 Min-sequence-length: 1554672

Got message from job at time 07-05-2023 13:47:13: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 8 Total-length: 197858320 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42842125 Median-sequence-length: 18283692 Max-sequence-length: 90022238 Min-sequence-length: 522092

Got message from job at time 07-05-2023 13:47:13: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 6 Total-length: 196116862 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52847467 Median-sequence-length: 38303809 Max-sequence-length: 90694299 Min-sequence-length: 46342

Got message from job at time 07-05-2023 13:47:13: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 15 Total-length: 197572665 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23114334 Median-sequence-length: 7148554 Max-sequence-length: 52460042 Min-sequence-length: 520328

Got message from job at time 07-05-2023 13:47:14: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 9 Total-length: 198997045 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52867761 Median-sequence-length: 13298607 Max-sequence-length: 57765666 Min-sequence-length: 36423

Got message from job at time 07-05-2023 13:47:14: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 7 Total-length: 199477281 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52851546 Median-sequence-length: 20928353 Max-sequence-length: 52904436 Min-sequence-length: 67693

Got message from job at time 07-05-2023 13:47:14: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 9 Total-length: 201236927 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 92746523 Median-sequence-length: 44830 Max-sequence-length: 93051885 Min-sequence-length: 17614

Got message from job at time 07-05-2023 13:47:14: Assembly stats for HG03540.1: Input-sample: HG03540.1.sanitized.fa Total-sequences: 7 Total-length: 202737025 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 49053524 Median-sequence-length: 42522957 Max-sequence-length: 57352239 Min-sequence-length: 488209

Got message from job at time 07-05-2023 13:47:14: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 3 Total-length: 201944128 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 108267787 Median-sequence-length: 92218437 Max-sequence-length: 108267787 Min-sequence-length: 1457904

Got message from job at time 07-05-2023 13:47:14: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 3 Total-length: 200513763 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 105941330 Median-sequence-length: 92999489 Max-sequence-length: 105941330 Min-sequence-length: 1572944

Got message from job at time 07-05-2023 13:47:14: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 198295559 Proportion-repeat-masked: 0.000985 ProportionNs: 0.000985 Total-Ns: 195417 N50: 198295559 Median-sequence-length: 198295559 Max-sequence-length: 198295559 Min-sequence-length: 198295559

Got message from job at time 07-05-2023 13:47:14: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 4 Total-length: 199643638 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54881045 Median-sequence-length: 54881045 Max-sequence-length: 75950910 Min-sequence-length: 16101785

Got message from job at time 07-05-2023 13:47:14: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 9 Total-length: 198915892 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51372305 Median-sequence-length: 18561484 Max-sequence-length: 52364419 Min-sequence-length: 47018

Got message from job at time 07-05-2023 13:47:14: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 5 Total-length: 197348374 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51069255 Median-sequence-length: 39872131 Max-sequence-length: 71478828 Min-sequence-length: 13832060

Got message from job at time 07-05-2023 13:47:14: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 23 Total-length: 199759363 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14600112 Median-sequence-length: 5013467 Max-sequence-length: 42364848 Min-sequence-length: 25427

Got message from job at time 07-05-2023 13:47:14: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 6 Total-length: 200104534 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51124662 Median-sequence-length: 37990142 Max-sequence-length: 92282910 Min-sequence-length: 1572828

Got message from job at time 07-05-2023 13:47:14: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 12 Total-length: 200945886 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37487834 Median-sequence-length: 12411367 Max-sequence-length: 71128422 Min-sequence-length: 75846

Got message from job at time 07-05-2023 13:47:14: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 14 Total-length: 198993550 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36592397 Median-sequence-length: 11228906 Max-sequence-length: 46553907 Min-sequence-length: 453876

cactus_consolidated(chrOther): Ran cactus make reference bottom up coordinates, 36 seconds have elapsed
Got message from job at time 07-05-2023 13:47:14: Assembly stats for NA18906.1: Input-sample: NA18906.1.sanitized.fa Total-sequences: 4 Total-length: 200317427 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54707762 Median-sequence-length: 54707762 Max-sequence-length: 92094790 Min-sequence-length: 518754

Got message from job at time 07-05-2023 13:47:14: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 3 Total-length: 201337240 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 93488225 Median-sequence-length: 93488225 Max-sequence-length: 93922909 Min-sequence-length: 13926106

cactus_consolidated(chrOther): Ran cactus make reference top down coordinates, 36 seconds have elapsed
cactus_consolidated(chrOther): Ran cactus to hal stage, 36 seconds have elapsed
cactus_consolidated(chrOther): Dumped sequences for hal file, 36 seconds have elapsed
cactus_consolidated(chrOther): Dumped reference sequences, 36 seconds have elapsed
cactus_consolidated(chrOther): Cactus consolidated is done!, 36 seconds have elapsed
2023-07-05 13:47:14.553693: Successfully ran cactus_consolidated(chrOther): "cactus_consolidated --sequences 'GRCh38 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/GRCh38.fa HG00438.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00438.1.fa HG00438.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00438.2.fa HG00621.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00621.1.fa HG00621.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00621.2.fa HG00673.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00673.2.fa HG00733.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00733.1.fa HG00733.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG00733.2.fa HG01071.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01071.2.fa HG01106.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01106.2.fa HG01109.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01109.1.fa HG01109.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01109.2.fa HG01123.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/HG01123.1.fa HG01123.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkk <...> eaa5514ac396e74254b92ca/ff18/829a/tmpipezlkkg/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 36.4114 seconds and 12.2 Gi memory with job-memory 55.1 Gi. Percent utilization: 22.16
Got message from job at time 07-05-2023 13:47:16: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 8 Total-length: 170504567 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43300388 Median-sequence-length: 19597245 Max-sequence-length: 67711399 Min-sequence-length: 31595

Got message from job at time 07-05-2023 13:47:16: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 10 Total-length: 170338390 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28664673 Median-sequence-length: 17459134 Max-sequence-length: 60067216 Min-sequence-length: 230421

Got message from job at time 07-05-2023 13:47:16: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 18 Total-length: 170374563 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27681389 Median-sequence-length: 2403046 Max-sequence-length: 53258115 Min-sequence-length: 31147

Got message from job at time 07-05-2023 13:47:16: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 4 Total-length: 169948088 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 110950181 Median-sequence-length: 32172171 Max-sequence-length: 110950181 Min-sequence-length: 131590

Got message from job at time 07-05-2023 13:47:16: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 3 Total-length: 170326716 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 59272483 Median-sequence-length: 59272483 Max-sequence-length: 59525942 Min-sequence-length: 51528291

Got message from job at time 07-05-2023 13:47:16: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 172126628 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 172126628 Median-sequence-length: 172126628 Max-sequence-length: 172126628 Min-sequence-length: 172126628

Got message from job at time 07-05-2023 13:47:16: Assembly stats for HG00735.1: Input-sample: HG00735.1.sanitized.fa Total-sequences: 5 Total-length: 171476142 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 102288089 Median-sequence-length: 20421189 Max-sequence-length: 102288089 Min-sequence-length: 32461

Got message from job at time 07-05-2023 13:47:16: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 3 Total-length: 171086924 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 96021617 Median-sequence-length: 59876178 Max-sequence-length: 96021617 Min-sequence-length: 15189129

Got message from job at time 07-05-2023 13:47:16: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 6 Total-length: 171356374 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 106327814 Median-sequence-length: 25111771 Max-sequence-length: 106327814 Min-sequence-length: 44422

Got message from job at time 07-05-2023 13:47:16: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 8 Total-length: 170787565 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 91759019 Median-sequence-length: 14823025 Max-sequence-length: 91759019 Min-sequence-length: 39314

Got message from job at time 07-05-2023 13:47:16: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 8 Total-length: 169470454 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31372997 Median-sequence-length: 24834737 Max-sequence-length: 43727377 Min-sequence-length: 2280988

Got message from job at time 07-05-2023 13:47:16: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 3 Total-length: 169742319 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 111048886 Median-sequence-length: 56346258 Max-sequence-length: 111048886 Min-sequence-length: 2347175

Got message from job at time 07-05-2023 13:47:16: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 6 Total-length: 171677244 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 102292284 Median-sequence-length: 26729048 Max-sequence-length: 102292284 Min-sequence-length: 1871507

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 4 Total-length: 171422735 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 111033399 Median-sequence-length: 43524149 Max-sequence-length: 111033399 Min-sequence-length: 4259460

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 9 Total-length: 170833269 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 56047404 Median-sequence-length: 10429623 Max-sequence-length: 60718179 Min-sequence-length: 96530

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 6 Total-length: 171632587 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35352640 Median-sequence-length: 25076587 Max-sequence-length: 73142346 Min-sequence-length: 4441814

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 3 Total-length: 170717134 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 110939538 Median-sequence-length: 40042795 Max-sequence-length: 110939538 Min-sequence-length: 19734801

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 18 Total-length: 170609746 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24957591 Median-sequence-length: 6418537 Max-sequence-length: 46812146 Min-sequence-length: 33634

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 7 Total-length: 172063069 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 39876757 Median-sequence-length: 16408528 Max-sequence-length: 71159838 Min-sequence-length: 260872

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 11 Total-length: 170820696 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35208411 Median-sequence-length: 6406284 Max-sequence-length: 53746183 Min-sequence-length: 25859

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 19 Total-length: 169327493 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27097772 Median-sequence-length: 4366749 Max-sequence-length: 53260473 Min-sequence-length: 222998

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 4 Total-length: 170760489 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 97994464 Median-sequence-length: 39988763 Max-sequence-length: 97994464 Min-sequence-length: 13012452

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 5 Total-length: 171942437 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 89067091 Median-sequence-length: 15232917 Max-sequence-length: 89067091 Min-sequence-length: 4324300

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 11 Total-length: 172177975 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42334815 Median-sequence-length: 4716766 Max-sequence-length: 55496981 Min-sequence-length: 392138

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 16 Total-length: 172324896 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25034630 Median-sequence-length: 6487540 Max-sequence-length: 47292741 Min-sequence-length: 37764

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 4 Total-length: 170271821 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 111275616 Median-sequence-length: 32274981 Max-sequence-length: 111275616 Min-sequence-length: 1669504

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 7 Total-length: 169536174 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 106552236 Median-sequence-length: 4500372 Max-sequence-length: 106552236 Min-sequence-length: 848431

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 2 Total-length: 170997496 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 111030476 Median-sequence-length: 111030476 Max-sequence-length: 111030476 Min-sequence-length: 59967020

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 4 Total-length: 170315574 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 110933207 Median-sequence-length: 34332109 Max-sequence-length: 110933207 Min-sequence-length: 2783382

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 6 Total-length: 170346475 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 98051049 Median-sequence-length: 13295837 Max-sequence-length: 98051049 Min-sequence-length: 1306942

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 16 Total-length: 171384720 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25040061 Median-sequence-length: 6421187 Max-sequence-length: 47324384 Min-sequence-length: 226049

Got message from job at time 07-05-2023 13:47:17: Ran cactus consolidated okay
Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 8 Total-length: 170559168 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31074631 Median-sequence-length: 26732262 Max-sequence-length: 69670456 Min-sequence-length: 1418813

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 20 Total-length: 171841669 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17400183 Median-sequence-length: 6457400 Max-sequence-length: 26762912 Min-sequence-length: 40103

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 11 Total-length: 170359009 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31257284 Median-sequence-length: 5430274 Max-sequence-length: 80926023 Min-sequence-length: 350875

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 11 Total-length: 171445669 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19624535 Median-sequence-length: 8918080 Max-sequence-length: 80908865 Min-sequence-length: 34631

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 11 Total-length: 171572150 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33720779 Median-sequence-length: 5428147 Max-sequence-length: 82647708 Min-sequence-length: 687019

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 3 Total-length: 171920842 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 98113914 Median-sequence-length: 60776310 Max-sequence-length: 98113914 Min-sequence-length: 13030618

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 7 Total-length: 170441622 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 88285896 Median-sequence-length: 10698155 Max-sequence-length: 88285896 Min-sequence-length: 339494

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 19 Total-length: 169914635 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 21125918 Median-sequence-length: 2610246 Max-sequence-length: 32233601 Min-sequence-length: 31799

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 20 Total-length: 170508271 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24098322 Median-sequence-length: 4715721 Max-sequence-length: 34110158 Min-sequence-length: 25716

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG00741.1: Input-sample: HG00741.1.sanitized.fa Total-sequences: 6 Total-length: 174392697 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 56286211 Median-sequence-length: 33802210 Max-sequence-length: 75888848 Min-sequence-length: 2090472

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 9 Total-length: 170120639 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43476526 Median-sequence-length: 18586525 Max-sequence-length: 46946123 Min-sequence-length: 1455967

Got message from job at time 07-05-2023 13:47:17: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 16 Total-length: 170499334 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25914025 Median-sequence-length: 6957077 Max-sequence-length: 46135377 Min-sequence-length: 138668

Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-phpy03b3 v1 with job batch system ID: 2684 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 8 Total-length: 170033399 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35118282 Median-sequence-length: 27574774 Max-sequence-length: 60707805 Min-sequence-length: 67567

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 10 Total-length: 169559275 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27121714 Median-sequence-length: 25046964 Max-sequence-length: 34583659 Min-sequence-length: 250947

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 19 Total-length: 171558711 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34883194 Median-sequence-length: 2707154 Max-sequence-length: 53225015 Min-sequence-length: 225909

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 5 Total-length: 171055757 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 94350166 Median-sequence-length: 25056619 Max-sequence-length: 94350166 Min-sequence-length: 7987128

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 12 Total-length: 169880740 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27602752 Median-sequence-length: 6421301 Max-sequence-length: 47289064 Min-sequence-length: 535868

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 12 Total-length: 169700029 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27275867 Median-sequence-length: 8707411 Max-sequence-length: 35229500 Min-sequence-length: 227523

Got message from job at time 07-05-2023 13:47:17: Assembly stats for NA20129.1: Input-sample: NA20129.1.sanitized.fa Total-sequences: 15 Total-length: 169978843 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19119377 Median-sequence-length: 7940145 Max-sequence-length: 27671618 Min-sequence-length: 21207

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 12 Total-length: 169759664 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 97962156 Median-sequence-length: 7083243 Max-sequence-length: 97962156 Min-sequence-length: 96052

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG03540.1: Input-sample: HG03540.1.sanitized.fa Total-sequences: 17 Total-length: 176241272 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26740894 Median-sequence-length: 4747420 Max-sequence-length: 47249189 Min-sequence-length: 23599

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 3 Total-length: 171765166 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 88998797 Median-sequence-length: 60616846 Max-sequence-length: 88998797 Min-sequence-length: 22149523

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 9 Total-length: 172916737 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35898743 Median-sequence-length: 17440115 Max-sequence-length: 53754113 Min-sequence-length: 53746

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG03453.1: Input-sample: HG03453.1.sanitized.fa Total-sequences: 12 Total-length: 171239903 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26688615 Median-sequence-length: 6453106 Max-sequence-length: 35679088 Min-sequence-length: 270714

Got message from job at time 07-05-2023 13:47:17: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 16 Total-length: 170571067 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27376079 Median-sequence-length: 4439839 Max-sequence-length: 47288572 Min-sequence-length: 54684

Issued job 'export_hal' kind-export_hal/instance-0y6zhdmk v1 with job batch system ID: 2685 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 13:47:21.273521: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/129b/b692/tmp0xvp9wvt/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p"
2023-07-05 13:47:21.274169: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9122/5549/tmpc8h2st1w/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p"
2023-07-05 13:47:21.277716: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/8029/3c1e/tmpinxrelfc/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p"
2023-07-05 13:47:21.280813: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/8aa1/c88d/tmpzs2b82il/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p"
2023-07-05 13:47:21.285507: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/20fd/08a5/tmpvytw5fft/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p"
2023-07-05 13:47:21.290727: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/4a6c/1399/tmpnj4s7fh7/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p"
2023-07-05 13:47:21.290971: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/43fe/cce7/tmpbkf2st1z/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p"
2023-07-05 13:47:21.291906: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/8769/628e/tmpva0ak2c5/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p"
2023-07-05 13:47:21.294553: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/dd56/acec/tmps97p1s8t/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p"
2023-07-05 13:47:21.297992: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/8a04/9308/tmpqtsxzewm/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p"
2023-07-05 13:47:21.301658: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/6459/b8bf/tmpagc9_h60/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p"
2023-07-05 13:47:21.301729: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a43a/76b4/tmplv7e1qye/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p"
2023-07-05 13:47:21.304019: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1bf2/f4f0/tmpv01551ri/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p"
2023-07-05 13:47:21.305173: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/4284/865e/tmpgdlvk6kh/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p"
2023-07-05 13:47:21.330989: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/6a78/cdad/tmp0nd8sqen/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p"
2023-07-05 13:47:21.333670: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/b198/65d3/tmprcq81n8y/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p"
2023-07-05 13:47:21.340568: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a5ba/aadb/tmps7x7zpt7/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p"
2023-07-05 13:47:21.346768: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/42c2/a56f/tmp2u2rpttq/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p"
2023-07-05 13:47:21.362727: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/7e4f/8882/tmpyazzbb6w/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p"
2023-07-05 13:47:21.365821: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/470a/1ec4/tmpl83dez3v/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p"
2023-07-05 13:47:21.368638: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/71c5/1032/tmp1s5bccx4/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p"
2023-07-05 13:47:21.373015: Running the command: "bash -c set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/f3a0/5440/tmplfc9hdk7/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p"
Got message from job at time 07-05-2023 13:47:21: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 12 Total-length: 235898597 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51056642 Median-sequence-length: 5990367 Max-sequence-length: 108191588 Min-sequence-length: 36500

Got message from job at time 07-05-2023 13:47:21: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 25 Total-length: 241929983 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37373223 Median-sequence-length: 665594 Max-sequence-length: 54064280 Min-sequence-length: 22125

Got message from job at time 07-05-2023 13:47:21: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 26 Total-length: 236694481 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30951719 Median-sequence-length: 2320086 Max-sequence-length: 41068572 Min-sequence-length: 23652

Got message from job at time 07-05-2023 13:47:21: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 2 Total-length: 97742400 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 87239510 Median-sequence-length: 87239510 Max-sequence-length: 87239510 Min-sequence-length: 10502890

Got message from job at time 07-05-2023 13:47:21: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 242696752 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 242696752 Median-sequence-length: 242696752 Max-sequence-length: 242696752 Min-sequence-length: 242696752

Got message from job at time 07-05-2023 13:47:21: Assembly stats for HG01071.1: Input-sample: HG01071.1.sanitized.fa Total-sequences: 14 Total-length: 242430866 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 61005457 Median-sequence-length: 4329845 Max-sequence-length: 111375482 Min-sequence-length: 40889

Got message from job at time 07-05-2023 13:47:21: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 27 Total-length: 243615443 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 15599481 Median-sequence-length: 7154959 Max-sequence-length: 33764815 Min-sequence-length: 22655

Got message from job at time 07-05-2023 13:47:21: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 113566686 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 113566686 Median-sequence-length: 113566686 Max-sequence-length: 113566686 Min-sequence-length: 113566686

Got message from job at time 07-05-2023 13:47:21: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 27 Total-length: 241231886 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 21257806 Median-sequence-length: 5359489 Max-sequence-length: 37377218 Min-sequence-length: 23620

Got message from job at time 07-05-2023 13:47:21: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 11 Total-length: 241936905 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 80333829 Median-sequence-length: 6864167 Max-sequence-length: 88046687 Min-sequence-length: 36194

Got message from job at time 07-05-2023 13:47:21: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 30 Total-length: 239429679 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 13548729 Median-sequence-length: 3762397 Max-sequence-length: 87437800 Min-sequence-length: 26913

Got message from job at time 07-05-2023 13:47:21: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 27171 Total-length: 246524448 Proportion-repeat-masked: 0.006674 ProportionNs: 0.006674 Total-Ns: 1645292 N50: 89474 Median-sequence-length: 96 Max-sequence-length: 2011904 Min-sequence-length: 1

Got message from job at time 07-05-2023 13:47:21: Assembly stats for HG01071.1: Input-sample: HG01071.1.sanitized.fa Total-sequences: 5 Total-length: 98338152 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 55592407 Median-sequence-length: 1055071 Max-sequence-length: 55592407 Min-sequence-length: 174595

Got message from job at time 07-05-2023 13:47:21: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 21 Total-length: 240667233 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 57368027 Median-sequence-length: 1059883 Max-sequence-length: 71323850 Min-sequence-length: 13774

Got message from job at time 07-05-2023 13:47:21: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 17 Total-length: 242004252 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36902729 Median-sequence-length: 7099348 Max-sequence-length: 75368418 Min-sequence-length: 25587

Got message from job at time 07-05-2023 13:47:21: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 13 Total-length: 241616081 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 77060494 Median-sequence-length: 4357217 Max-sequence-length: 111690671 Min-sequence-length: 107693

Got message from job at time 07-05-2023 13:47:21: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 11 Total-length: 240218987 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54673245 Median-sequence-length: 10334087 Max-sequence-length: 101332320 Min-sequence-length: 201309

Got message from job at time 07-05-2023 13:47:21: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 3 Total-length: 101458766 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 56492871 Median-sequence-length: 44431795 Max-sequence-length: 56492871 Min-sequence-length: 534100

Got message from job at time 07-05-2023 13:47:21: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 27 Total-length: 238226628 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19008463 Median-sequence-length: 1660331 Max-sequence-length: 87395179 Min-sequence-length: 38409

Got message from job at time 07-05-2023 13:47:21: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 21 Total-length: 243215439 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36923109 Median-sequence-length: 2582122 Max-sequence-length: 54101324 Min-sequence-length: 23741

Got message from job at time 07-05-2023 13:47:21: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 18 Total-length: 242559958 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54127199 Median-sequence-length: 6695461 Max-sequence-length: 101367096 Min-sequence-length: 33364

Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 17 Total-length: 240886427 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44728731 Median-sequence-length: 3794739 Max-sequence-length: 51494019 Min-sequence-length: 26416

Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 10 Total-length: 242443430 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 48194113 Median-sequence-length: 7809906 Max-sequence-length: 78533993 Min-sequence-length: 23985

Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 11 Total-length: 241996296 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 88233003 Median-sequence-length: 663881 Max-sequence-length: 101379193 Min-sequence-length: 40157

Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 17 Total-length: 240710204 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27670525 Median-sequence-length: 8007673 Max-sequence-length: 47719784 Min-sequence-length: 50099

Got message from job at time 07-05-2023 13:47:22: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 15 Total-length: 99069739 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 44 N50: 11740690 Median-sequence-length: 4920592 Max-sequence-length: 27234419 Min-sequence-length: 348932

Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 6 Total-length: 96937587 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27567324 Median-sequence-length: 21493298 Max-sequence-length: 34132497 Min-sequence-length: 1619857

Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 4 Total-length: 97864100 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29642992 Median-sequence-length: 29642992 Max-sequence-length: 34125360 Min-sequence-length: 6547982

Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 15 Total-length: 240377634 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 66771773 Median-sequence-length: 3342806 Max-sequence-length: 108325242 Min-sequence-length: 124119

Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 8 Total-length: 104550572 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18142423 Median-sequence-length: 14288713 Max-sequence-length: 22646493 Min-sequence-length: 522664

Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 8 Total-length: 101755716 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17171928 Median-sequence-length: 13292945 Max-sequence-length: 39623526 Min-sequence-length: 517079

Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 5 Total-length: 102872873 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29106224 Median-sequence-length: 27580837 Max-sequence-length: 34140050 Min-sequence-length: 528956

Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 25 Total-length: 238381854 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35386713 Median-sequence-length: 1151887 Max-sequence-length: 63402994 Min-sequence-length: 29291

Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 8 Total-length: 96686556 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16766118 Median-sequence-length: 13151458 Max-sequence-length: 27604429 Min-sequence-length: 103165

2023-07-05 13:47:22.187066: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/43fe/cce7/tmpbkf2st1z/NA18906.2.fa | cactus_sanitizeFastaHeaders - NA18906.2 -p'" in 0.8948 seconds and 51.9 Mi memory
2023-07-05 13:47:22.192066: Running the command: "cactus_analyseAssembly NA18906.2.sanitized.fa"
Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 17 Total-length: 242259377 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 57677840 Median-sequence-length: 7323369 Max-sequence-length: 64441629 Min-sequence-length: 60127

2023-07-05 13:47:22.196746: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/8769/628e/tmpva0ak2c5/HG03579.1.fa | cactus_sanitizeFastaHeaders - HG03579.1 -p'" in 0.9036 seconds and 51.9 Mi memory
2023-07-05 13:47:22.201720: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/8a04/9308/tmpqtsxzewm/HG02080.1.fa | cactus_sanitizeFastaHeaders - HG02080.1 -p'" in 0.9021 seconds and 51.9 Mi memory
2023-07-05 13:47:22.201870: Running the command: "cactus_analyseAssembly HG03579.1.sanitized.fa"
2023-07-05 13:47:22.207034: Running the command: "cactus_analyseAssembly HG02080.1.sanitized.fa"
2023-07-05 13:47:22.209976: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/9122/5549/tmpc8h2st1w/HG03486.2.fa | cactus_sanitizeFastaHeaders - HG03486.2 -p'" in 0.9345 seconds and 51.9 Mi memory
2023-07-05 13:47:22.215181: Running the command: "cactus_analyseAssembly HG03486.2.sanitized.fa"
Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 5 Total-length: 97145285 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 57174474 Median-sequence-length: 16958826 Max-sequence-length: 57174474 Min-sequence-length: 36604

2023-07-05 13:47:22.217600: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/4a6c/1399/tmpnj4s7fh7/HG01109.1.fa | cactus_sanitizeFastaHeaders - HG01109.1 -p'" in 0.9256 seconds and 51.9 Mi memory
2023-07-05 13:47:22.222754: Running the command: "cactus_analyseAssembly HG01109.1.sanitized.fa"
2023-07-05 13:47:22.225138: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/4284/865e/tmpgdlvk6kh/HG02080.2.fa | cactus_sanitizeFastaHeaders - HG02080.2 -p'" in 0.9188 seconds and 61.7 Mi memory
2023-07-05 13:47:22.228932: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a5ba/aadb/tmps7x7zpt7/NA21309.2.fa | cactus_sanitizeFastaHeaders - NA21309.2 -p'" in 0.8873 seconds and 22.5 Mi memory
2023-07-05 13:47:22.230300: Running the command: "cactus_analyseAssembly HG02080.2.sanitized.fa"
2023-07-05 13:47:22.234000: Running the command: "cactus_analyseAssembly NA21309.2.sanitized.fa"
Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 24 Total-length: 240437706 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25009455 Median-sequence-length: 3307455 Max-sequence-length: 57299034 Min-sequence-length: 46386

2023-07-05 13:47:22.241910: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/6459/b8bf/tmpagc9_h60/HG02630.1.fa | cactus_sanitizeFastaHeaders - HG02630.1 -p'" in 0.939 seconds and 51.9 Mi memory
2023-07-05 13:47:22.246817: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/b198/65d3/tmprcq81n8y/HG02148.1.fa | cactus_sanitizeFastaHeaders - HG02148.1 -p'" in 0.9119 seconds and 55.5 Mi memory
2023-07-05 13:47:22.247059: Running the command: "cactus_analyseAssembly HG02630.1.sanitized.fa"
2023-07-05 13:47:22.247064: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/8029/3c1e/tmpinxrelfc/HG02109.1.fa | cactus_sanitizeFastaHeaders - HG02109.1 -p'" in 0.9681 seconds and 22.3 Mi memory
2023-07-05 13:47:22.248433: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/8aa1/c88d/tmpzs2b82il/HG02145.2.fa | cactus_sanitizeFastaHeaders - HG02145.2 -p'" in 0.9664 seconds and 51.9 Mi memory
2023-07-05 13:47:22.248624: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/dd56/acec/tmps97p1s8t/HG03540.1.fa | cactus_sanitizeFastaHeaders - HG03540.1 -p'" in 0.9528 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 5 Total-length: 95718679 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27546732 Median-sequence-length: 17164342 Max-sequence-length: 46497453 Min-sequence-length: 165974

2023-07-05 13:47:22.251913: Running the command: "cactus_analyseAssembly HG02148.1.sanitized.fa"
2023-07-05 13:47:22.252275: Running the command: "cactus_analyseAssembly HG02109.1.sanitized.fa"
2023-07-05 13:47:22.253057: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/a43a/76b4/tmplv7e1qye/HG01891.1.fa | cactus_sanitizeFastaHeaders - HG01891.1 -p'" in 0.9501 seconds and 154.0 Mi memory
2023-07-05 13:47:22.253659: Running the command: "cactus_analyseAssembly HG02145.2.sanitized.fa"
2023-07-05 13:47:22.253924: Running the command: "cactus_analyseAssembly HG03540.1.sanitized.fa"
Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 12 Total-length: 99015994 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 12194211 Median-sequence-length: 7674219 Max-sequence-length: 27585804 Min-sequence-length: 57336

2023-07-05 13:47:22.258340: Running the command: "cactus_analyseAssembly HG01891.1.sanitized.fa"
2023-07-05 13:47:22.259594: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/1bf2/f4f0/tmpv01551ri/HG01978.2.fa | cactus_sanitizeFastaHeaders - HG01978.2 -p'" in 0.9546 seconds and 51.9 Mi memory
2023-07-05 13:47:22.263499: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/129b/b692/tmp0xvp9wvt/HG02622.1.fa | cactus_sanitizeFastaHeaders - HG02622.1 -p'" in 0.9887 seconds and 51.9 Mi memory
2023-07-05 13:47:22.264439: Running the command: "cactus_analyseAssembly HG01978.2.sanitized.fa"
2023-07-05 13:47:22.268157: Running the command: "cactus_analyseAssembly HG02622.1.sanitized.fa"
2023-07-05 13:47:22.271063: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/7e4f/8882/tmpyazzbb6w/NA20129.1.fa | cactus_sanitizeFastaHeaders - NA20129.1 -p'" in 0.9072 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 5 Total-length: 97896683 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27588095 Median-sequence-length: 22384654 Max-sequence-length: 40841268 Min-sequence-length: 519350

2023-07-05 13:47:22.274757: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/20fd/08a5/tmpvytw5fft/HG01243.2.fa | cactus_sanitizeFastaHeaders - HG01243.2 -p'" in 0.9883 seconds and 51.9 Mi memory
2023-07-05 13:47:22.276694: Running the command: "cactus_analyseAssembly NA20129.1.sanitized.fa"
2023-07-05 13:47:22.279272: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/42c2/a56f/tmp2u2rpttq/HG01928.2.fa | cactus_sanitizeFastaHeaders - HG01928.2 -p'" in 0.9314 seconds and 153.9 Mi memory
2023-07-05 13:47:22.280116: Running the command: "cactus_analyseAssembly HG01243.2.sanitized.fa"
2023-07-05 13:47:22.284276: Running the command: "cactus_analyseAssembly HG01928.2.sanitized.fa"
Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 16 Total-length: 242591705 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36908673 Median-sequence-length: 7310115 Max-sequence-length: 71307433 Min-sequence-length: 27172

Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 23 Total-length: 243861522 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30483858 Median-sequence-length: 3294265 Max-sequence-length: 47440233 Min-sequence-length: 25432

Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 9 Total-length: 97190937 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 13858897 Median-sequence-length: 11737979 Max-sequence-length: 29065414 Min-sequence-length: 500291

2023-07-05 13:47:22.331312: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/f3a0/5440/tmplfc9hdk7/HG03540.2.fa | cactus_sanitizeFastaHeaders - HG03540.2 -p'" in 0.9571 seconds and 51.9 Mi memory
2023-07-05 13:47:22.338447: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/71c5/1032/tmp1s5bccx4/HG02055.2.fa | cactus_sanitizeFastaHeaders - HG02055.2 -p'" in 0.9687 seconds and 51.9 Mi memory
2023-07-05 13:47:22.339628: Running the command: "cactus_analyseAssembly HG03540.2.sanitized.fa"
2023-07-05 13:47:22.343252: Running the command: "cactus_analyseAssembly HG02055.2.sanitized.fa"
2023-07-05 13:47:22.379462: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/6a78/cdad/tmp0nd8sqen/GRCh38.fa | cactus_sanitizeFastaHeaders - GRCh38 -p'" in 1.0472 seconds and 153.9 Mi memory
2023-07-05 13:47:22.384192: Running the command: "cactus_analyseAssembly GRCh38.sanitized.fa"
2023-07-05 13:47:22.415796: Successfully ran: "bash -c 'set -eo pipefail && gzip -dc /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/470a/1ec4/tmpl83dez3v/HG00438.2.fa | cactus_sanitizeFastaHeaders - HG00438.2 -p'" in 1.0489 seconds and 153.9 Mi memory
2023-07-05 13:47:22.420833: Running the command: "cactus_analyseAssembly HG00438.2.sanitized.fa"
Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 14 Total-length: 241730840 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37940431 Median-sequence-length: 10038725 Max-sequence-length: 63890357 Min-sequence-length: 75453

Got message from job at time 07-05-2023 13:47:22: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 25 Total-length: 242359828 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17044954 Median-sequence-length: 10040560 Max-sequence-length: 26520662 Min-sequence-length: 17914

Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 7 Total-length: 102647052 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29625076 Median-sequence-length: 15333274 Max-sequence-length: 30090204 Min-sequence-length: 355077

Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 15 Total-length: 237467115 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 88019839 Median-sequence-length: 4488126 Max-sequence-length: 101339947 Min-sequence-length: 24742

Got message from job at time 07-05-2023 13:47:22: Assembly stats for NA20129.1: Input-sample: NA20129.1.sanitized.fa Total-sequences: 21 Total-length: 242876628 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19788757 Median-sequence-length: 7607027 Max-sequence-length: 47440367 Min-sequence-length: 16376

Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 2 Total-length: 96929220 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 57163022 Median-sequence-length: 57163022 Max-sequence-length: 57163022 Min-sequence-length: 39766198

Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG02622.1: Input-sample: HG02622.1.sanitized.fa Total-sequences: 10 Total-length: 240923889 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 67994917 Median-sequence-length: 10336331 Max-sequence-length: 79125756 Min-sequence-length: 47267

Got message from job at time 07-05-2023 13:47:22: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 28 Total-length: 239220665 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19808483 Median-sequence-length: 6314231 Max-sequence-length: 33781258 Min-sequence-length: 25643

2023-07-05 13:47:22.825664: Successfully ran: "cactus_analyseAssembly NA18906.2.sanitized.fa" in 0.6327 seconds and 51.9 Mi memory
2023-07-05 13:47:22.831483: Successfully ran: "cactus_analyseAssembly HG03579.1.sanitized.fa" in 0.6288 seconds and 51.9 Mi memory
2023-07-05 13:47:22.834608: Successfully ran: "cactus_analyseAssembly HG03486.2.sanitized.fa" in 0.6186 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 3 Total-length: 97220611 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40060665 Median-sequence-length: 40060665 Max-sequence-length: 42861246 Min-sequence-length: 14298700

2023-07-05 13:47:22.839592: Successfully ran: "cactus_analyseAssembly HG02080.1.sanitized.fa" in 0.6318 seconds and 51.9 Mi memory
2023-07-05 13:47:22.859281: Successfully ran: "cactus_analyseAssembly HG02109.1.sanitized.fa" in 0.6061 seconds and 22.2 Mi memory
Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 21 Total-length: 238433908 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19941486 Median-sequence-length: 7610059 Max-sequence-length: 62390372 Min-sequence-length: 191361

2023-07-05 13:47:22.861148: Successfully ran: "cactus_analyseAssembly HG01109.1.sanitized.fa" in 0.6376 seconds and 51.9 Mi memory
2023-07-05 13:47:22.862533: Successfully ran: "cactus_analyseAssembly NA21309.2.sanitized.fa" in 0.6278 seconds and 22.5 Mi memory
2023-07-05 13:47:22.873537: Successfully ran: "cactus_analyseAssembly HG02080.2.sanitized.fa" in 0.6424 seconds and 61.6 Mi memory
2023-07-05 13:47:22.876473: Successfully ran: "cactus_analyseAssembly HG02145.2.sanitized.fa" in 0.622 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 13 Total-length: 97693321 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 11755354 Median-sequence-length: 5116694 Max-sequence-length: 28106906 Min-sequence-length: 18167

2023-07-05 13:47:22.890694: Successfully ran: "cactus_analyseAssembly HG02630.1.sanitized.fa" in 0.6428 seconds and 51.9 Mi memory
2023-07-05 13:47:22.893685: Successfully ran: "cactus_analyseAssembly HG03540.1.sanitized.fa" in 0.6388 seconds and 51.9 Mi memory
2023-07-05 13:47:22.894348: Successfully ran: "cactus_analyseAssembly HG02622.1.sanitized.fa" in 0.6253 seconds and 51.9 Mi memory
2023-07-05 13:47:22.899800: Successfully ran: "cactus_analyseAssembly HG01978.2.sanitized.fa" in 0.6347 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:47:22: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 4 Total-length: 97314901 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 72233926 Median-sequence-length: 18761681 Max-sequence-length: 72233926 Min-sequence-length: 350807

2023-07-05 13:47:22.911287: Successfully ran: "cactus_analyseAssembly HG02148.1.sanitized.fa" in 0.6586 seconds and 55.5 Mi memory
2023-07-05 13:47:22.940022: Successfully ran: "cactus_analyseAssembly NA20129.1.sanitized.fa" in 0.6625 seconds and 51.9 Mi memory
2023-07-05 13:47:22.944112: Successfully ran: "cactus_analyseAssembly HG01891.1.sanitized.fa" in 0.6849 seconds and 153.9 Mi memory
2023-07-05 13:47:22.988168: Successfully ran: "cactus_analyseAssembly HG01928.2.sanitized.fa" in 0.703 seconds and 153.9 Mi memory
2023-07-05 13:47:23.015290: Successfully ran: "cactus_analyseAssembly HG02055.2.sanitized.fa" in 0.6713 seconds and 51.9 Mi memory
2023-07-05 13:47:23.018585: Successfully ran: "cactus_analyseAssembly HG03540.2.sanitized.fa" in 0.678 seconds and 51.9 Mi memory
2023-07-05 13:47:23.170379: Successfully ran: "cactus_analyseAssembly HG00438.2.sanitized.fa" in 0.7487 seconds and 153.9 Mi memory
2023-07-05 13:47:23.182404: Successfully ran: "cactus_analyseAssembly GRCh38.sanitized.fa" in 0.7973 seconds and 153.9 Mi memory
2023-07-05 13:47:23.262980: Successfully ran: "cactus_analyseAssembly HG01243.2.sanitized.fa" in 0.9821 seconds and 51.9 Mi memory
Got message from job at time 07-05-2023 13:47:23: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 10 Total-length: 242264349 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 68503119 Median-sequence-length: 19746385 Max-sequence-length: 81645982 Min-sequence-length: 166396

Got message from job at time 07-05-2023 13:47:23: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 5 Total-length: 103637289 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 87302245 Median-sequence-length: 48946 Max-sequence-length: 87302245 Min-sequence-length: 44528

Got message from job at time 07-05-2023 13:47:23: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 3 Total-length: 103411587 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 56261167 Median-sequence-length: 46263545 Max-sequence-length: 56261167 Min-sequence-length: 886875

Got message from job at time 07-05-2023 13:47:23: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 8 Total-length: 236314144 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 118547538 Median-sequence-length: 19725383 Max-sequence-length: 118547538 Min-sequence-length: 26128

Got message from job at time 07-05-2023 13:47:23: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 7 Total-length: 99505194 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27587925 Median-sequence-length: 6850608 Max-sequence-length: 33859548 Min-sequence-length: 526626

Got message from job at time 07-05-2023 13:47:23: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 5 Total-length: 96492781 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20381403 Median-sequence-length: 18143673 Max-sequence-length: 39337166 Min-sequence-length: 7677881

Got message from job at time 07-05-2023 13:47:23: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 9 Total-length: 180823730 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43147108 Median-sequence-length: 21787001 Max-sequence-length: 54189158 Min-sequence-length: 376894

Got message from job at time 07-05-2023 13:47:23: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 6 Total-length: 179381571 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 130704444 Median-sequence-length: 4934249 Max-sequence-length: 130704444 Min-sequence-length: 156722

Got message from job at time 07-05-2023 13:47:23: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 3 Total-length: 170600405 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 103078045 Median-sequence-length: 59396933 Max-sequence-length: 103078045 Min-sequence-length: 8125427

Got message from job at time 07-05-2023 13:47:23: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 15 Total-length: 182049422 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25110693 Median-sequence-length: 6364140 Max-sequence-length: 51401838 Min-sequence-length: 109171

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 6 Total-length: 180727106 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 110625089 Median-sequence-length: 21591682 Max-sequence-length: 110625089 Min-sequence-length: 48762

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 16 Total-length: 98155680 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 11793773 Median-sequence-length: 4024417 Max-sequence-length: 22472844 Min-sequence-length: 94427

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 20 Total-length: 241081256 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 47741252 Median-sequence-length: 5354802 Max-sequence-length: 63735141 Min-sequence-length: 29359

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 7 Total-length: 169723160 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 56158886 Median-sequence-length: 4718014 Max-sequence-length: 67162064 Min-sequence-length: 28733

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 15 Total-length: 179698981 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25100040 Median-sequence-length: 6322114 Max-sequence-length: 51404066 Min-sequence-length: 49481

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 3 Total-length: 101213767 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 86903371 Median-sequence-length: 14285379 Max-sequence-length: 86903371 Min-sequence-length: 25017

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG01071.1: Input-sample: HG01071.1.sanitized.fa Total-sequences: 6 Total-length: 182979823 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 148182694 Median-sequence-length: 11278322 Max-sequence-length: 148182694 Min-sequence-length: 382790

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 4 Total-length: 170585514 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 59464697 Median-sequence-length: 59464697 Max-sequence-length: 82708971 Min-sequence-length: 8725786

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 4 Total-length: 171056280 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 123902156 Median-sequence-length: 25039860 Max-sequence-length: 123902156 Min-sequence-length: 8748030

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 17 Total-length: 242907459 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 60468810 Median-sequence-length: 667899 Max-sequence-length: 118296892 Min-sequence-length: 23273

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 11 Total-length: 241923315 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 67719007 Median-sequence-length: 7212384 Max-sequence-length: 101330394 Min-sequence-length: 205410

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 4 Total-length: 172079371 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 111176784 Median-sequence-length: 25027143 Max-sequence-length: 111176784 Min-sequence-length: 14785192

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 9 Total-length: 171408108 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35100897 Median-sequence-length: 19614162 Max-sequence-length: 47311133 Min-sequence-length: 840777

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG00621.1: Input-sample: HG00621.1.sanitized.fa Total-sequences: 7 Total-length: 182231880 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 59447805 Median-sequence-length: 10598367 Max-sequence-length: 63401524 Min-sequence-length: 102502

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 17 Total-length: 239205541 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52238450 Median-sequence-length: 1210922 Max-sequence-length: 111343792 Min-sequence-length: 19691

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 2 Total-length: 97088809 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 57240366 Median-sequence-length: 57240366 Max-sequence-length: 57240366 Min-sequence-length: 39848443

Got message from job at time 07-05-2023 13:47:24: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 170805979 Proportion-repeat-masked: 0.004259 ProportionNs: 0.004259 Total-Ns: 727456 N50: 170805979 Median-sequence-length: 170805979 Max-sequence-length: 170805979 Min-sequence-length: 170805979

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 16 Total-length: 170616808 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27177738 Median-sequence-length: 5058460 Max-sequence-length: 47301429 Min-sequence-length: 17801

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 11 Total-length: 181966368 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 47974394 Median-sequence-length: 6809521 Max-sequence-length: 57873861 Min-sequence-length: 385656

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 19 Total-length: 242115452 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23221309 Median-sequence-length: 7124272 Max-sequence-length: 83920630 Min-sequence-length: 27835

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 3 Total-length: 100075584 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42867287 Median-sequence-length: 42867287 Max-sequence-length: 42908706 Min-sequence-length: 14299591

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 18 Total-length: 169314865 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19207295 Median-sequence-length: 5570449 Max-sequence-length: 47328102 Min-sequence-length: 260678

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 11 Total-length: 183472711 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31577246 Median-sequence-length: 6359632 Max-sequence-length: 68620973 Min-sequence-length: 385311

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 16 Total-length: 241987189 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37244207 Median-sequence-length: 10347212 Max-sequence-length: 62424860 Min-sequence-length: 215148

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG03453.1: Input-sample: HG03453.1.sanitized.fa Total-sequences: 24 Total-length: 241349153 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37399694 Median-sequence-length: 2572064 Max-sequence-length: 63901295 Min-sequence-length: 24727

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 3 Total-length: 104176128 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54807775 Median-sequence-length: 35071426 Max-sequence-length: 54807775 Min-sequence-length: 14296927

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 13 Total-length: 242606474 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41996062 Median-sequence-length: 7309258 Max-sequence-length: 111694427 Min-sequence-length: 49686

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 4 Total-length: 97353487 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 40140059 Median-sequence-length: 40140059 Max-sequence-length: 43296591 Min-sequence-length: 360048

Got message from job at time 07-05-2023 13:47:24: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 242193529 Proportion-repeat-masked: 0.006793 ProportionNs: 0.006793 Total-Ns: 1645292 N50: 242193529 Median-sequence-length: 242193529 Max-sequence-length: 242193529 Min-sequence-length: 242193529

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 14 Total-length: 178353247 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 34669722 Median-sequence-length: 6176054 Max-sequence-length: 75085749 Min-sequence-length: 54842

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 5 Total-length: 97058610 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27535599 Median-sequence-length: 16976655 Max-sequence-length: 46513843 Min-sequence-length: 208426

Got message from job at time 07-05-2023 13:47:24: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 19 Total-length: 242511455 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 33360438 Median-sequence-length: 300835 Max-sequence-length: 95563463 Min-sequence-length: 32591

Got message from job at time 07-05-2023 13:47:24: Assembly stats for NA18906.1: Input-sample: NA18906.1.sanitized.fa Total-sequences: 7 Total-length: 172297313 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 106560121 Median-sequence-length: 3753691 Max-sequence-length: 106560121 Min-sequence-length: 717249

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 9 Total-length: 170797764 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 92802367 Median-sequence-length: 10246933 Max-sequence-length: 92802367 Min-sequence-length: 536987

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG02622.1: Input-sample: HG02622.1.sanitized.fa Total-sequences: 7 Total-length: 183444318 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 103756111 Median-sequence-length: 6361080 Max-sequence-length: 103756111 Min-sequence-length: 44425

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG00741.1: Input-sample: HG00741.1.sanitized.fa Total-sequences: 8 Total-length: 99912956 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27223167 Median-sequence-length: 16945038 Max-sequence-length: 29546262 Min-sequence-length: 26938

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 15 Total-length: 241641185 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 62195488 Median-sequence-length: 4092827 Max-sequence-length: 81675512 Min-sequence-length: 22865

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG03579.2: Input-sample: HG03579.2.sanitized.fa Total-sequences: 11 Total-length: 182401390 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30670289 Median-sequence-length: 5887181 Max-sequence-length: 82866456 Min-sequence-length: 379613

Got message from job at time 07-05-2023 13:47:24: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 19 Total-length: 170400263 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27119921 Median-sequence-length: 3499255 Max-sequence-length: 60206918 Min-sequence-length: 67661

Got message from job at time 07-05-2023 13:47:24: Assembly stats for NA20129.2: Input-sample: NA20129.2.sanitized.fa Total-sequences: 14 Total-length: 179399902 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23988694 Median-sequence-length: 9103430 Max-sequence-length: 51455405 Min-sequence-length: 392885

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 14 Total-length: 239713547 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 45578758 Median-sequence-length: 2946030 Max-sequence-length: 88024536 Min-sequence-length: 25268

Got message from job at time 07-05-2023 13:47:24: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 19021 Total-length: 173830006 Proportion-repeat-masked: 0.004185 ProportionNs: 0.004185 Total-Ns: 727456 N50: 80261 Median-sequence-length: 99 Max-sequence-length: 1913445 Min-sequence-length: 1

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 4 Total-length: 169556084 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 110972408 Median-sequence-length: 39879370 Max-sequence-length: 110972408 Min-sequence-length: 35470

Got message from job at time 07-05-2023 13:47:24: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 181538259 Proportion-repeat-masked: 0.014075 ProportionNs: 0.014075 Total-Ns: 2555066 N50: 181538259 Median-sequence-length: 181538259 Max-sequence-length: 181538259 Min-sequence-length: 181538259

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 23 Total-length: 170501947 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20121680 Median-sequence-length: 4017782 Max-sequence-length: 34210238 Min-sequence-length: 35193

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 11 Total-length: 242535559 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 68499264 Median-sequence-length: 124119 Max-sequence-length: 111702959 Min-sequence-length: 57914

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG02630.2: Input-sample: HG02630.2.sanitized.fa Total-sequences: 15 Total-length: 170470673 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29780808 Median-sequence-length: 4111956 Max-sequence-length: 46820973 Min-sequence-length: 228757

Got message from job at time 07-05-2023 13:47:24: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 8 Total-length: 172575319 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 32471775 Median-sequence-length: 29624882 Max-sequence-length: 35131654 Min-sequence-length: 2423923

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 16 Total-length: 241270817 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37414334 Median-sequence-length: 8161919 Max-sequence-length: 54089296 Min-sequence-length: 199691

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 7 Total-length: 183412532 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 95617831 Median-sequence-length: 8146014 Max-sequence-length: 95617831 Min-sequence-length: 392011

Got message from job at time 07-05-2023 13:47:24: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 18 Total-length: 243014256 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26584443 Median-sequence-length: 13088686 Max-sequence-length: 36225595 Min-sequence-length: 38665

Got message from job at time 07-05-2023 13:47:25: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 4 Total-length: 182166715 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 177336230 Median-sequence-length: 4397486 Max-sequence-length: 177336230 Min-sequence-length: 53949

Got message from job at time 07-05-2023 13:47:25: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 15 Total-length: 171942313 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24318094 Median-sequence-length: 4795127 Max-sequence-length: 61833914 Min-sequence-length: 33960

Got message from job at time 07-05-2023 13:47:25: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 14 Total-length: 181522544 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30513748 Median-sequence-length: 6170319 Max-sequence-length: 51543474 Min-sequence-length: 27457

Got message from job at time 07-05-2023 13:47:25: Assembly stats for HG02572.2: Input-sample: HG02572.2.sanitized.fa Total-sequences: 19 Total-length: 180422516 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26893122 Median-sequence-length: 1989691 Max-sequence-length: 38941572 Min-sequence-length: 346038

Got message from job at time 07-05-2023 13:47:25: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 20 Total-length: 240976968 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25395584 Median-sequence-length: 8283419 Max-sequence-length: 47697480 Min-sequence-length: 66596

Got message from job at time 07-05-2023 13:47:25: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 7 Total-length: 182782875 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 160280861 Median-sequence-length: 350773 Max-sequence-length: 160280861 Min-sequence-length: 24458

Got message from job at time 07-05-2023 13:47:25: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 13 Total-length: 240601380 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 77112132 Median-sequence-length: 6879290 Max-sequence-length: 101363491 Min-sequence-length: 41762

Got message from job at time 07-05-2023 13:47:25: Assembly stats for HG02717.2: Input-sample: HG02717.2.sanitized.fa Total-sequences: 10 Total-length: 236045550 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54105779 Median-sequence-length: 19742535 Max-sequence-length: 70868280 Min-sequence-length: 202009

Got message from job at time 07-05-2023 13:47:26: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 32 Total-length: 241238843 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19953357 Median-sequence-length: 2934613 Max-sequence-length: 39539990 Min-sequence-length: 18445

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 8 Total-length: 182087208 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 59390468 Median-sequence-length: 11819672 Max-sequence-length: 71652996 Min-sequence-length: 34062

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 14 Total-length: 241530063 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36682182 Median-sequence-length: 9031426 Max-sequence-length: 75381855 Min-sequence-length: 203390

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 20 Total-length: 242173070 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 45798634 Median-sequence-length: 4888886 Max-sequence-length: 51676272 Min-sequence-length: 21342

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 13 Total-length: 241796390 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 68315887 Median-sequence-length: 7105453 Max-sequence-length: 81645821 Min-sequence-length: 34357

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG02559.2: Input-sample: HG02559.2.sanitized.fa Total-sequences: 7 Total-length: 182430605 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 59430926 Median-sequence-length: 11021562 Max-sequence-length: 73979660 Min-sequence-length: 335211

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG02109.2: Input-sample: HG02109.2.sanitized.fa Total-sequences: 18 Total-length: 181558565 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25707981 Median-sequence-length: 6586716 Max-sequence-length: 41716914 Min-sequence-length: 19784

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 14 Total-length: 237699038 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43783951 Median-sequence-length: 7621525 Max-sequence-length: 118534722 Min-sequence-length: 40613

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 17 Total-length: 243585795 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 71314074 Median-sequence-length: 690995 Max-sequence-length: 73647905 Min-sequence-length: 29301

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 7 Total-length: 177486851 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 100841767 Median-sequence-length: 5170720 Max-sequence-length: 100841767 Min-sequence-length: 441470

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG02622.1: Input-sample: HG02622.1.sanitized.fa Total-sequences: 9 Total-length: 172237712 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 92134630 Median-sequence-length: 6358867 Max-sequence-length: 92134630 Min-sequence-length: 35484

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 7 Total-length: 178415917 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 104418897 Median-sequence-length: 6375124 Max-sequence-length: 104418897 Min-sequence-length: 376912

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 14 Total-length: 181430601 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 51420712 Median-sequence-length: 6477957 Max-sequence-length: 52792433 Min-sequence-length: 388986

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 6 Total-length: 181565971 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 103539819 Median-sequence-length: 13578143 Max-sequence-length: 103539819 Min-sequence-length: 384665

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 14 Total-length: 241288588 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 68258592 Median-sequence-length: 5343046 Max-sequence-length: 71314752 Min-sequence-length: 34528

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 10 Total-length: 241011209 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 141899317 Median-sequence-length: 7287153 Max-sequence-length: 141899317 Min-sequence-length: 89216

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 15 Total-length: 241840244 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 56831411 Median-sequence-length: 6718435 Max-sequence-length: 101328790 Min-sequence-length: 193213

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG02723.2: Input-sample: HG02723.2.sanitized.fa Total-sequences: 17 Total-length: 182306149 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30594632 Median-sequence-length: 5905220 Max-sequence-length: 44709486 Min-sequence-length: 26104

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 10 Total-length: 177683983 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 97721731 Median-sequence-length: 5986333 Max-sequence-length: 97721731 Min-sequence-length: 49290

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 7 Total-length: 242932880 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 88017124 Median-sequence-length: 13018603 Max-sequence-length: 111718856 Min-sequence-length: 204124

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 21 Total-length: 242989336 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19815679 Median-sequence-length: 11232701 Max-sequence-length: 40950664 Min-sequence-length: 24817

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG01175.2: Input-sample: HG01175.2.sanitized.fa Total-sequences: 9 Total-length: 241555329 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 58725761 Median-sequence-length: 12032652 Max-sequence-length: 118576810 Min-sequence-length: 196393

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 8 Total-length: 171135569 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 35172687 Median-sequence-length: 15162376 Max-sequence-length: 60675209 Min-sequence-length: 3647119

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 8 Total-length: 239341694 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 60428208 Median-sequence-length: 20287037 Max-sequence-length: 108248715 Min-sequence-length: 35521

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG01123.2: Input-sample: HG01123.2.sanitized.fa Total-sequences: 11 Total-length: 182109223 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 50652301 Median-sequence-length: 6377288 Max-sequence-length: 53044359 Min-sequence-length: 22795

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG03486.1: Input-sample: HG03486.1.sanitized.fa Total-sequences: 17 Total-length: 182241371 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19700224 Median-sequence-length: 6371652 Max-sequence-length: 51417239 Min-sequence-length: 35734

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 17 Total-length: 169871624 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 43 N50: 27438479 Median-sequence-length: 2658101 Max-sequence-length: 47286599 Min-sequence-length: 81203

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG02559.1: Input-sample: HG02559.1.sanitized.fa Total-sequences: 6 Total-length: 180205764 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 110433957 Median-sequence-length: 22506429 Max-sequence-length: 110433957 Min-sequence-length: 80066

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 13 Total-length: 239926097 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25060831 Median-sequence-length: 12681342 Max-sequence-length: 108233799 Min-sequence-length: 204841

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 27 Total-length: 242405171 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 11546039 Median-sequence-length: 7063482 Max-sequence-length: 47461463 Min-sequence-length: 51695

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 24 Total-length: 241989031 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 16926205 Median-sequence-length: 8469365 Max-sequence-length: 37400238 Min-sequence-length: 40108

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 6 Total-length: 170013111 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 102443225 Median-sequence-length: 24808650 Max-sequence-length: 102443225 Min-sequence-length: 255755

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG01175.1: Input-sample: HG01175.1.sanitized.fa Total-sequences: 7 Total-length: 182537052 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 126766583 Median-sequence-length: 5677477 Max-sequence-length: 126766583 Min-sequence-length: 363853

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 13 Total-length: 241930961 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54639450 Median-sequence-length: 6843800 Max-sequence-length: 111405775 Min-sequence-length: 29172

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG00673.1: Input-sample: HG00673.1.sanitized.fa Total-sequences: 13 Total-length: 182237821 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27827381 Median-sequence-length: 6398395 Max-sequence-length: 76518319 Min-sequence-length: 32517

Got message from job at time 07-05-2023 13:47:26: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 13 Total-length: 189718463 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 50576078 Median-sequence-length: 5876144 Max-sequence-length: 59404869 Min-sequence-length: 30913

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG03540.1: Input-sample: HG03540.1.sanitized.fa Total-sequences: 13 Total-length: 241889442 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37374221 Median-sequence-length: 9671501 Max-sequence-length: 63329177 Min-sequence-length: 34301

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG01106.1: Input-sample: HG01106.1.sanitized.fa Total-sequences: 15 Total-length: 242251337 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54595895 Median-sequence-length: 6844962 Max-sequence-length: 101368469 Min-sequence-length: 24385

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 11 Total-length: 241882892 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 54642815 Median-sequence-length: 9650764 Max-sequence-length: 91044223 Min-sequence-length: 311649

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG01361.2: Input-sample: HG01361.2.sanitized.fa Total-sequences: 8 Total-length: 239991801 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 78387370 Median-sequence-length: 26958307 Max-sequence-length: 81620165 Min-sequence-length: 46772

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 15 Total-length: 240273095 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 49136707 Median-sequence-length: 6850216 Max-sequence-length: 97561878 Min-sequence-length: 120297

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG03492.2: Input-sample: HG03492.2.sanitized.fa Total-sequences: 21 Total-length: 241982137 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19906220 Median-sequence-length: 6421450 Max-sequence-length: 68991370 Min-sequence-length: 58319

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 9 Total-length: 239852145 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 68508512 Median-sequence-length: 6887167 Max-sequence-length: 111681792 Min-sequence-length: 24123

Got message from job at time 07-05-2023 13:47:26: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 13 Total-length: 239436549 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 55158059 Median-sequence-length: 6869293 Max-sequence-length: 111734708 Min-sequence-length: 30120

Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-iq02d5yb v1 with job batch system ID: 2686 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:47:28: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 7 Total-length: 190083433 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 97410743 Median-sequence-length: 18124112 Max-sequence-length: 97410743 Min-sequence-length: 22736

Got message from job at time 07-05-2023 13:47:28: Assembly stats for HG00735.1: Input-sample: HG00735.1.sanitized.fa Total-sequences: 7 Total-length: 193512643 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 130824852 Median-sequence-length: 5319525 Max-sequence-length: 130824852 Min-sequence-length: 1990120

Got message from job at time 07-05-2023 13:47:28: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 8 Total-length: 192942559 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 111041098 Median-sequence-length: 5298333 Max-sequence-length: 111041098 Min-sequence-length: 27358

Got message from job at time 07-05-2023 13:47:28: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 7 Total-length: 190764948 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 103293926 Median-sequence-length: 24603177 Max-sequence-length: 103293926 Min-sequence-length: 579563

Got message from job at time 07-05-2023 13:47:28: Assembly stats for HG02723.1: Input-sample: HG02723.1.sanitized.fa Total-sequences: 18 Total-length: 190401295 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17373949 Median-sequence-length: 12816716 Max-sequence-length: 25008977 Min-sequence-length: 86047

Got message from job at time 07-05-2023 13:47:28: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 21 Total-length: 191075417 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18887277 Median-sequence-length: 7005753 Max-sequence-length: 30426437 Min-sequence-length: 30782

Got message from job at time 07-05-2023 13:47:28: Assembly stats for HG00741.1: Input-sample: HG00741.1.sanitized.fa Total-sequences: 7 Total-length: 190643333 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 101736279 Median-sequence-length: 18478380 Max-sequence-length: 101736279 Min-sequence-length: 46876

Got message from job at time 07-05-2023 13:47:28: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 11 Total-length: 191986202 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 50904119 Median-sequence-length: 1935572 Max-sequence-length: 79870355 Min-sequence-length: 31109

Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-frg7418v v1 with job batch system ID: 2687 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:47:28: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 9 Total-length: 190929348 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 116988299 Median-sequence-length: 11108042 Max-sequence-length: 116988299 Min-sequence-length: 516680

Got message from job at time 07-05-2023 13:47:28: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 6 Total-length: 190740631 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52814149 Median-sequence-length: 49024958 Max-sequence-length: 80085299 Min-sequence-length: 1558974

Got message from job at time 07-05-2023 13:47:28: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 15 Total-length: 190195428 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41615601 Median-sequence-length: 7417291 Max-sequence-length: 54554801 Min-sequence-length: 24417

Estimating cactus_consolidated(chr18) memory as 365.6 Gi from 91 sequences with total-sequence-size 6.7 Gi and paf-size 137901248 using <conslidatedMemory> configuration settings
Estimating cactus_consolidated(chrX) memory as 476.8 Gi from 91 sequences with total-sequence-size 10.8 Gi and paf-size 173568779 using <conslidatedMemory> configuration settings
Got message from job at time 07-05-2023 13:47:28: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 7 Total-length: 192721942 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 41594781 Median-sequence-length: 25461099 Max-sequence-length: 60096115 Min-sequence-length: 4561966

Got message from job at time 07-05-2023 13:47:29: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 14 Total-length: 190268573 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 106668606 Median-sequence-length: 2013635 Max-sequence-length: 106668606 Min-sequence-length: 17477

Got message from job at time 07-05-2023 13:47:29: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 16 Total-length: 189818470 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22464782 Median-sequence-length: 7859109 Max-sequence-length: 50379137 Min-sequence-length: 611602

Got message from job at time 07-05-2023 13:47:29: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 8 Total-length: 191041324 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 58419860 Median-sequence-length: 8089107 Max-sequence-length: 73573197 Min-sequence-length: 26730

Got message from job at time 07-05-2023 13:47:29: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 190214555 Proportion-repeat-masked: 0.002428 ProportionNs: 0.002428 Total-Ns: 461888 N50: 190214555 Median-sequence-length: 190214555 Max-sequence-length: 190214555 Min-sequence-length: 190214555

Got message from job at time 07-05-2023 13:47:29: Assembly stats for HG00735.2: Input-sample: HG00735.2.sanitized.fa Total-sequences: 6 Total-length: 192213228 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 56474489 Median-sequence-length: 51497281 Max-sequence-length: 80424547 Min-sequence-length: 99099

2023-07-05 13:47:29.339598: Running the command: "halAppendCactusSubtree /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e14c/285b/tmpwrraoafq/Anc0.hal.c2h /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e14c/285b/tmpwrraoafq/Anc0.hal.fa (GRCh38:0.025,HG02145.1:0.025,HG02723.1:0.025,HG03516.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e14c/285b/tmpwrraoafq/Anc0.hal --inMemory"
Got message from job at time 07-05-2023 13:47:29: Assembly stats for HG02486.1: Input-sample: HG02486.1.sanitized.fa Total-sequences: 5 Total-length: 190680237 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 99413163 Median-sequence-length: 26359445 Max-sequence-length: 99413163 Min-sequence-length: 7275418

Got message from job at time 07-05-2023 13:47:29: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 19 Total-length: 190973417 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 18239589 Median-sequence-length: 5303174 Max-sequence-length: 48683253 Min-sequence-length: 86454

Got message from job at time 07-05-2023 13:47:29: Assembly stats for HG01891.2: Input-sample: HG01891.2.sanitized.fa Total-sequences: 4 Total-length: 189905555 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 139026112 Median-sequence-length: 26107155 Max-sequence-length: 139026112 Min-sequence-length: 53386

Got message from job at time 07-05-2023 13:47:29: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 12 Total-length: 192967100 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28757914 Median-sequence-length: 14673168 Max-sequence-length: 44931366 Min-sequence-length: 34120

Got message from job at time 07-05-2023 13:47:29: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 16 Total-length: 191950014 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17758735 Median-sequence-length: 12707913 Max-sequence-length: 30139301 Min-sequence-length: 105935

Got message from job at time 07-05-2023 13:47:29: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 11 Total-length: 192078368 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20065649 Median-sequence-length: 15014168 Max-sequence-length: 41611595 Min-sequence-length: 1969288

Got message from job at time 07-05-2023 13:47:29: Assembly stats for HG02622.2: Input-sample: HG02622.2.sanitized.fa Total-sequences: 4 Total-length: 190031190 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 139507333 Median-sequence-length: 24260841 Max-sequence-length: 139507333 Min-sequence-length: 8003731

Got message from job at time 07-05-2023 13:47:29: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 6 Total-length: 191348258 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43430727 Median-sequence-length: 38656824 Max-sequence-length: 79744605 Min-sequence-length: 62507

Got message from job at time 07-05-2023 13:47:29: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 7 Total-length: 190933574 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 99633027 Median-sequence-length: 12567020 Max-sequence-length: 99633027 Min-sequence-length: 46571

Got message from job at time 07-05-2023 13:47:29: Assembly stats for HG01361.1: Input-sample: HG01361.1.sanitized.fa Total-sequences: 7 Total-length: 190273485 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 116036575 Median-sequence-length: 6310597 Max-sequence-length: 116036575 Min-sequence-length: 2075372

Got message from job at time 07-05-2023 13:47:29: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 20 Total-length: 190102221 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19425155 Median-sequence-length: 6908878 Max-sequence-length: 43484660 Min-sequence-length: 41041

Got message from job at time 07-05-2023 13:47:29: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 8 Total-length: 190847175 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37760707 Median-sequence-length: 32590861 Max-sequence-length: 51178205 Min-sequence-length: 70350

Got message from job at time 07-05-2023 13:47:29: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 16 Total-length: 192127933 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20694244 Median-sequence-length: 9403371 Max-sequence-length: 38148342 Min-sequence-length: 27946

2023-07-05 13:47:30.073317: Successfully ran: "halAppendCactusSubtree /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e14c/285b/tmpwrraoafq/Anc0.hal.c2h /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e14c/285b/tmpwrraoafq/Anc0.hal.fa '(GRCh38:0.025,HG02145.1:0.025,HG02723.1:0.025,HG03516.1:0.025,_MINIGRAPH_:0.025)Anc0;' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e14c/285b/tmpwrraoafq/Anc0.hal --inMemory" in 0.7324 seconds and 20.8 Mi memory with job-memory 62.1 Mi. Percent utilization: 33.5
2023-07-05 13:47:30.073701: Running the command: "halSetMetadata /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e14c/285b/tmpwrraoafq/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
Estimating cactus_consolidated(chr3) memory as 476.8 Gi from 91 sequences with total-sequence-size 17.1 Gi and paf-size 284623174 using <conslidatedMemory> configuration settings
2023-07-05 13:47:30.179050: Successfully ran: "halSetMetadata /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e14c/285b/tmpwrraoafq/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.1046 seconds and 5.5 Mi memory
2023-07-05 13:47:30.183968: Running the command: "halSetMetadata /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e14c/285b/tmpwrraoafq/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
Estimating cactus_consolidated(chr1) memory as 476.8 Gi from 91 sequences with total-sequence-size 20.6 Gi and paf-size 365242028 using <conslidatedMemory> configuration settings
2023-07-05 13:47:30.189244: Successfully ran: "halSetMetadata /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e14c/285b/tmpwrraoafq/Anc0.hal CACTUS_CONFIG 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 <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0043 seconds and 5.9 Mi memory
2023-07-05 13:47:30.189446: Running the command: "halRemoveDupes /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e14c/285b/tmpwrraoafq/Anc0.hal GRCh38"
Estimating cactus_consolidated(chr15) memory as 386.0 Gi from 91 sequences with total-sequence-size 7.2 Gi and paf-size 131060802 using <conslidatedMemory> configuration settings
Estimating cactus_consolidated(chr7) memory as 476.8 Gi from 91 sequences with total-sequence-size 13.7 Gi and paf-size 299017281 using <conslidatedMemory> configuration settings
2023-07-05 13:47:30.293310: Successfully ran: "halRemoveDupes /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e14c/285b/tmpwrraoafq/Anc0.hal GRCh38" in 0.1032 seconds and 6.8 Mi memory with job-memory 62.1 Mi. Percent utilization: 10.9
Got message from job at time 07-05-2023 13:47:30: Assembly stats for HG03516.2: Input-sample: HG03516.2.sanitized.fa Total-sequences: 5 Total-length: 182776724 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 49051857 Median-sequence-length: 37126058 Max-sequence-length: 73727345 Min-sequence-length: 372478

Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-xevg1p2r v1 with job batch system ID: 2688 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:47:30: Assembly stats for HG02717.1: Input-sample: HG02717.1.sanitized.fa Total-sequences: 12 Total-length: 178789107 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 46946745 Median-sequence-length: 4302743 Max-sequence-length: 76514093 Min-sequence-length: 53949

Issued job 'cactus_cons' kind-cactus_cons/instance-rwzcg7ca v1 with job batch system ID: 2689 and disk: 33.8 Gi, memory: 365.6 Gi, cores: 64, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:47:30: Assembly stats for HG01952.2: Input-sample: HG01952.2.sanitized.fa Total-sequences: 7 Total-length: 182670443 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 104831513 Median-sequence-length: 6376597 Max-sequence-length: 104831513 Min-sequence-length: 47502

Got message from job at time 07-05-2023 13:47:30: Assembly stats for HG02818.2: Input-sample: HG02818.2.sanitized.fa Total-sequences: 16 Total-length: 180514730 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23470367 Median-sequence-length: 8815843 Max-sequence-length: 28400177 Min-sequence-length: 30844

Issued job 'cactus_cons' kind-cactus_cons/instance-sefrxaf1 v1 with job batch system ID: 2690 and disk: 54.1 Gi, memory: 476.8 Gi, cores: 64, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:47:30: Assembly stats for HG03453.2: Input-sample: HG03453.2.sanitized.fa Total-sequences: 12 Total-length: 181565726 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25334320 Median-sequence-length: 12395310 Max-sequence-length: 49853367 Min-sequence-length: 356459

Got message from job at time 07-05-2023 13:47:31: Assembly stats for NA21309.1: Input-sample: NA21309.1.sanitized.fa Total-sequences: 13 Total-length: 177536504 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 21932229 Median-sequence-length: 11476754 Max-sequence-length: 31421677 Min-sequence-length: 395857

Got message from job at time 07-05-2023 13:47:31: Assembly stats for HG00438.1: Input-sample: HG00438.1.sanitized.fa Total-sequences: 10 Total-length: 181867865 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 95575657 Median-sequence-length: 7977496 Max-sequence-length: 95575657 Min-sequence-length: 66657

Got message from job at time 07-05-2023 13:47:31: Assembly stats for HG03453.1: Input-sample: HG03453.1.sanitized.fa Total-sequences: 12 Total-length: 182421035 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27899652 Median-sequence-length: 16663688 Max-sequence-length: 33964103 Min-sequence-length: 359359

Got message from job at time 07-05-2023 13:47:31: Assembly stats for HG03540.1: Input-sample: HG03540.1.sanitized.fa Total-sequences: 13 Total-length: 182830815 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 48023020 Median-sequence-length: 6389014 Max-sequence-length: 51866122 Min-sequence-length: 35495

Got message from job at time 07-05-2023 13:47:31: Assembly stats for HG01071.2: Input-sample: HG01071.2.sanitized.fa Total-sequences: 5 Total-length: 182541869 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 103762185 Median-sequence-length: 34401093 Max-sequence-length: 103762185 Min-sequence-length: 388155

Got message from job at time 07-05-2023 13:47:31: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 15 Total-length: 183502058 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29358606 Median-sequence-length: 6493225 Max-sequence-length: 32278874 Min-sequence-length: 45869

Got message from job at time 07-05-2023 13:47:31: Assembly stats for HG01358.1: Input-sample: HG01358.1.sanitized.fa Total-sequences: 8 Total-length: 179751293 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 43036729 Median-sequence-length: 22541191 Max-sequence-length: 67339080 Min-sequence-length: 372863

2023-07-05 13:47:31.997775: Running the command: "halAppendCactusSubtree /data/tmp/2a95a9ee729755068515bad92da082de/b021/c84e/tmpdaz9w8oy/Anc0.hal.c2h /data/tmp/2a95a9ee729755068515bad92da082de/b021/c84e/tmpdaz9w8oy/Anc0.hal.fa (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG01071.2:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01928.1:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02486.1:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02630.1:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG03098.2:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03579.1:0.025,NA21309.1:0.025,NA21309.2:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/2a95a9ee729755068515bad92da082de/b021/c84e/tmpdaz9w8oy/Anc0.hal --inMemory"
Got message from job at time 07-05-2023 13:47:31: Assembly stats for HG03516.1: Input-sample: HG03516.1.sanitized.fa Total-sequences: 11 Total-length: 182845354 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 36957416 Median-sequence-length: 5257038 Max-sequence-length: 68527535 Min-sequence-length: 29388

Got message from job at time 07-05-2023 13:47:32: Assembly stats for HG02257.1: Input-sample: HG02257.1.sanitized.fa Total-sequences: 8 Total-length: 180959399 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 110050687 Median-sequence-length: 5249722 Max-sequence-length: 110050687 Min-sequence-length: 56317

Got message from job at time 07-05-2023 13:47:32: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 14 Total-length: 180004686 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 24455242 Median-sequence-length: 9657031 Max-sequence-length: 51436712 Min-sequence-length: 77279

Got message from job at time 07-05-2023 13:47:32: Assembly stats for HG01258.2: Input-sample: HG01258.2.sanitized.fa Total-sequences: 7 Total-length: 181957908 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 103697679 Median-sequence-length: 6376572 Max-sequence-length: 103697679 Min-sequence-length: 61286

Got message from job at time 07-05-2023 13:47:32: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 9 Total-length: 184182589 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 101877135 Median-sequence-length: 12819844 Max-sequence-length: 101877135 Min-sequence-length: 52884

cactus_consolidated(chrY): Ran cactus bar (use poa:1), 39 seconds have elapsed
Got message from job at time 07-05-2023 13:47:32: Assembly stats for HG01109.2: Input-sample: HG01109.2.sanitized.fa Total-sequences: 11 Total-length: 181023485 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 50968056 Median-sequence-length: 10718386 Max-sequence-length: 65417637 Min-sequence-length: 365446

cactus_consolidated(chrY): There are 8 layers in the flowers hierarchy
cactus_consolidated(chrY): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chrY): Chose reference event 2: Anc0
cactus_consolidated(chrY): For flower: 0 we have 0 nodes for: 17194 ends, 1039 chains, 0 stubs and 6676 blocks
cactus_consolidated(chrY): Building a matching for 0 stub nodes in the top level problem from 3842 total stubs of which 2078 attached , 17194 total ends, 1039 chains, 6676 blocks 7715 groups and 1921 sequences
cactus_consolidated(chrY): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chrY): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chrY): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chrY): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
Estimating cactus_consolidated(chr16) memory as 404.4 Gi from 91 sequences with total-sequence-size 7.6 Gi and paf-size 164650557 using <conslidatedMemory> configuration settings
Got message from job at time 07-05-2023 13:47:33: Assembly stats for HG02818.1: Input-sample: HG02818.1.sanitized.fa Total-sequences: 17 Total-length: 181975812 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25104097 Median-sequence-length: 5899059 Max-sequence-length: 30832747 Min-sequence-length: 19775

Got message from job at time 07-05-2023 13:47:33: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 7 Total-length: 97105038 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 63752800 Median-sequence-length: 5705018 Max-sequence-length: 63752800 Min-sequence-length: 48052

Got message from job at time 07-05-2023 13:47:33: Assembly stats for HG01123.1: Input-sample: HG01123.1.sanitized.fa Total-sequences: 10 Total-length: 183509209 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 103978760 Median-sequence-length: 3295659 Max-sequence-length: 103978760 Min-sequence-length: 33255

Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-7th5b2hr v1 with job batch system ID: 2691 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_vg' kind-export_vg/instance-74bamc9d v1 with job batch system ID: 2692 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:47:33: Assembly stats for HG02886.1: Input-sample: HG02886.1.sanitized.fa Total-sequences: 17 Total-length: 184377549 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25501325 Median-sequence-length: 4556446 Max-sequence-length: 51459063 Min-sequence-length: 22656

Got message from job at time 07-05-2023 13:47:33: Assembly stats for HG01952.1: Input-sample: HG01952.1.sanitized.fa Total-sequences: 8 Total-length: 183340394 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 129578577 Median-sequence-length: 6386736 Max-sequence-length: 129578577 Min-sequence-length: 27501

cactus_consolidated(chrY): In the 1 layer there are 7715 flowers in the flowers hierarchy
Got message from job at time 07-05-2023 13:47:33: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 7 Total-length: 181957569 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 103699609 Median-sequence-length: 6252935 Max-sequence-length: 103699609 Min-sequence-length: 33051

Got message from job at time 07-05-2023 13:47:33: Assembly stats for HG03540.2: Input-sample: HG03540.2.sanitized.fa Total-sequences: 10 Total-length: 106129678 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 14587786 Median-sequence-length: 13292436 Max-sequence-length: 29557621 Min-sequence-length: 37838

Got message from job at time 07-05-2023 13:47:33: Assembly stats for HG01358.2: Input-sample: HG01358.2.sanitized.fa Total-sequences: 7 Total-length: 179940337 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 123863604 Median-sequence-length: 3874870 Max-sequence-length: 123863604 Min-sequence-length: 344128

Got message from job at time 07-05-2023 13:47:33: Assembly stats for HG03540.1: Input-sample: HG03540.1.sanitized.fa Total-sequences: 6 Total-length: 98953816 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29574760 Median-sequence-length: 27585703 Max-sequence-length: 34159233 Min-sequence-length: 37838

Got message from job at time 07-05-2023 13:47:33: Assembly stats for HG02055.2: Input-sample: HG02055.2.sanitized.fa Total-sequences: 4 Total-length: 105018189 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29620009 Median-sequence-length: 29620009 Max-sequence-length: 30908224 Min-sequence-length: 16942763

Got message from job at time 07-05-2023 13:47:33: Assembly stats for HG01978.1: Input-sample: HG01978.1.sanitized.fa Total-sequences: 13 Total-length: 181489574 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42552264 Median-sequence-length: 4958236 Max-sequence-length: 53079156 Min-sequence-length: 52884

cactus_consolidated(chrY): In the 2 layer there are 11124 flowers in the flowers hierarchy
Got message from job at time 07-05-2023 13:47:33: Assembly stats for HG00735.1: Input-sample: HG00735.1.sanitized.fa Total-sequences: 6 Total-length: 180212502 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 109889325 Median-sequence-length: 21429372 Max-sequence-length: 109889325 Min-sequence-length: 143029

Got message from job at time 07-05-2023 13:47:33: Assembly stats for HG02622.1: Input-sample: HG02622.1.sanitized.fa Total-sequences: 5 Total-length: 96434003 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29587220 Median-sequence-length: 27201385 Max-sequence-length: 39266255 Min-sequence-length: 27609

cactus_consolidated(chrY): In the 3 layer there are 5988 flowers in the flowers hierarchy
Got message from job at time 07-05-2023 13:47:33: Assembly stats for HG01891.1: Input-sample: HG01891.1.sanitized.fa Total-sequences: 3 Total-length: 97766201 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 87192206 Median-sequence-length: 10550984 Max-sequence-length: 87192206 Min-sequence-length: 23011

cactus_consolidated(chrY): In the 4 layer there are 1250 flowers in the flowers hierarchy
2023-07-05 13:47:33.789255: Running the command: "hal2vg /data/tmp/fb6bb230be1f50648d9c685404953bb7/3843/7e9d/tmpz06ri9ar/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
cactus_consolidated(chrY): In the 5 layer there are 179 flowers in the flowers hierarchy
cactus_consolidated(chrY): In the 6 layer there are 5 flowers in the flowers hierarchy
cactus_consolidated(chrY): In the 7 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chrY): Ran cactus make reference, 40 seconds have elapsed
Issued job 'cactus_cons_with_resources' kind-cactus_cons_with_resources/instance-wjb7k2r2 v1 with job batch system ID: 2693 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:47:33: Assembly stats for HG02572.1: Input-sample: HG02572.1.sanitized.fa Total-sequences: 19 Total-length: 180963332 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 30847050 Median-sequence-length: 2423464 Max-sequence-length: 61297794 Min-sequence-length: 82637

Issued job 'cactus_cons' kind-cactus_cons/instance-s408wc3x v1 with job batch system ID: 2694 and disk: 103.8 Gi, memory: 476.8 Gi, cores: 64, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:47:33: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 5 Total-length: 180654576 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 152507898 Median-sequence-length: 6329050 Max-sequence-length: 152507898 Min-sequence-length: 378078

Issued job 'cactus_cons' kind-cactus_cons/instance-l37iphs3 v1 with job batch system ID: 2695 and disk: 69.1 Gi, memory: 476.8 Gi, cores: 64, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG01258.1: Input-sample: HG01258.1.sanitized.fa Total-sequences: 8 Total-length: 182740890 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52140236 Median-sequence-length: 12620231 Max-sequence-length: 55208402 Min-sequence-length: 40521

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 19 Total-length: 180111785 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 19875285 Median-sequence-length: 4971075 Max-sequence-length: 47064578 Min-sequence-length: 26137

Issued job 'cactus_cons' kind-cactus_cons/instance-9xk78dfv v1 with job batch system ID: 2696 and disk: 36.2 Gi, memory: 386.0 Gi, cores: 64, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG00621.2: Input-sample: HG00621.2.sanitized.fa Total-sequences: 6 Total-length: 182087308 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 104847779 Median-sequence-length: 27163080 Max-sequence-length: 104847779 Min-sequence-length: 102502

Issued job 'cactus_cons' kind-cactus_cons/instance-1r1s36sz v1 with job batch system ID: 2697 and disk: 86.1 Gi, memory: 476.8 Gi, cores: 64, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG01109.1: Input-sample: HG01109.1.sanitized.fa Total-sequences: 6 Total-length: 97413792 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22376996 Median-sequence-length: 14298159 Max-sequence-length: 41285845 Min-sequence-length: 2133101

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 10 Total-length: 97836812 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23749225 Median-sequence-length: 8394344 Max-sequence-length: 27541989 Min-sequence-length: 348339

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG00733.1: Input-sample: HG00733.1.sanitized.fa Total-sequences: 8 Total-length: 181356269 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 110286670 Median-sequence-length: 4205101 Max-sequence-length: 110286670 Min-sequence-length: 21707

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG00733.2: Input-sample: HG00733.2.sanitized.fa Total-sequences: 9 Total-length: 182659179 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 44120289 Median-sequence-length: 3199686 Max-sequence-length: 78555672 Min-sequence-length: 14166

Got message from job at time 07-05-2023 13:47:34: Assembly stats for NA20129.1: Input-sample: NA20129.1.sanitized.fa Total-sequences: 14 Total-length: 178392724 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31514992 Median-sequence-length: 6166333 Max-sequence-length: 35315706 Min-sequence-length: 106486

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG00438.2: Input-sample: HG00438.2.sanitized.fa Total-sequences: 2 Total-length: 109021070 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 81441538 Median-sequence-length: 81441538 Max-sequence-length: 81441538 Min-sequence-length: 27579532

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG00741.2: Input-sample: HG00741.2.sanitized.fa Total-sequences: 5 Total-length: 182783388 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 147827812 Median-sequence-length: 13739726 Max-sequence-length: 147827812 Min-sequence-length: 385121

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG00673.2: Input-sample: HG00673.2.sanitized.fa Total-sequences: 8 Total-length: 177953427 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 28692546 Median-sequence-length: 20434620 Max-sequence-length: 82917119 Min-sequence-length: 375087

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG02055.1: Input-sample: HG02055.1.sanitized.fa Total-sequences: 10 Total-length: 183425410 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25375783 Median-sequence-length: 21160270 Max-sequence-length: 59464254 Min-sequence-length: 35846

2023-07-05 13:47:34.236616: Successfully ran: "hal2vg /data/tmp/fb6bb230be1f50648d9c685404953bb7/3843/7e9d/tmpz06ri9ar/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 0.4462 seconds and 21.1 Mi memory with job-memory 44.2 Mi. Percent utilization: 47.72
Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 15 Total-length: 180413934 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26912917 Median-sequence-length: 5902734 Max-sequence-length: 39097705 Min-sequence-length: 30125

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG03098.1: Input-sample: HG03098.1.sanitized.fa Total-sequences: 11 Total-length: 179179001 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 31475627 Median-sequence-length: 5532942 Max-sequence-length: 83215375 Min-sequence-length: 373219

Got message from job at time 07-05-2023 13:47:34: Assembly stats for CHM13: Input-sample: CHM13.sanitized.fa Total-sequences: 1 Total-length: 182045439 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 182045439 Median-sequence-length: 182045439 Max-sequence-length: 182045439 Min-sequence-length: 182045439

Got message from job at time 07-05-2023 13:47:34: Assembly stats for _MINIGRAPH_: Input-sample: _MINIGRAPH_.sanitized.fa Total-sequences: 20730 Total-length: 188893615 Proportion-repeat-masked: 0.013526 ProportionNs: 0.013526 Total-Ns: 2555066 N50: 89341 Median-sequence-length: 115 Max-sequence-length: 2364991 Min-sequence-length: 1

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG01928.1: Input-sample: HG01928.1.sanitized.fa Total-sequences: 5 Total-length: 182923960 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 154533993 Median-sequence-length: 6325354 Max-sequence-length: 154533993 Min-sequence-length: 393434

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG03486.2: Input-sample: HG03486.2.sanitized.fa Total-sequences: 12 Total-length: 96330346 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 11741760 Median-sequence-length: 7205790 Max-sequence-length: 27211994 Min-sequence-length: 356099

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 4 Total-length: 99904573 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 57188594 Median-sequence-length: 17160902 Max-sequence-length: 57188594 Min-sequence-length: 8611859

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG01243.2: Input-sample: HG01243.2.sanitized.fa Total-sequences: 10 Total-length: 183320843 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 37034685 Median-sequence-length: 6750810 Max-sequence-length: 82884369 Min-sequence-length: 359261

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG02148.2: Input-sample: HG02148.2.sanitized.fa Total-sequences: 9 Total-length: 179260799 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 104115855 Median-sequence-length: 6299889 Max-sequence-length: 104115855 Min-sequence-length: 50829

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG02886.2: Input-sample: HG02886.2.sanitized.fa Total-sequences: 12 Total-length: 181557689 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27249631 Median-sequence-length: 12043220 Max-sequence-length: 51445857 Min-sequence-length: 383340

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG02080.2: Input-sample: HG02080.2.sanitized.fa Total-sequences: 14 Total-length: 182276495 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22080302 Median-sequence-length: 11604494 Max-sequence-length: 28260669 Min-sequence-length: 401341

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG01243.1: Input-sample: HG01243.1.sanitized.fa Total-sequences: 9 Total-length: 183501545 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 50575081 Median-sequence-length: 6197931 Max-sequence-length: 68127984 Min-sequence-length: 25276

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG01106.2: Input-sample: HG01106.2.sanitized.fa Total-sequences: 10 Total-length: 180640178 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 104157204 Median-sequence-length: 6814652 Max-sequence-length: 104157204 Min-sequence-length: 376125

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG02148.1: Input-sample: HG02148.1.sanitized.fa Total-sequences: 9 Total-length: 178630065 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 42541387 Median-sequence-length: 6326119 Max-sequence-length: 71128951 Min-sequence-length: 29509

Got message from job at time 07-05-2023 13:47:34: Assembly stats for NA18906.2: Input-sample: NA18906.2.sanitized.fa Total-sequences: 5 Total-length: 96799666 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 27917829 Median-sequence-length: 14260737 Max-sequence-length: 41296658 Min-sequence-length: 159832

Got message from job at time 07-05-2023 13:47:34: Assembly stats for GRCh38: Input-sample: GRCh38.sanitized.fa Total-sequences: 1 Total-length: 114364328 Proportion-repeat-masked: 0.143237 ProportionNs: 0.143237 Total-Ns: 16381200 N50: 114364328 Median-sequence-length: 114364328 Max-sequence-length: 114364328 Min-sequence-length: 114364328

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG02257.2: Input-sample: HG02257.2.sanitized.fa Total-sequences: 9 Total-length: 183888174 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 103625707 Median-sequence-length: 6387826 Max-sequence-length: 103625707 Min-sequence-length: 288841

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG00741.1: Input-sample: HG00741.1.sanitized.fa Total-sequences: 8 Total-length: 180537936 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 104328285 Median-sequence-length: 6348211 Max-sequence-length: 104328285 Min-sequence-length: 36895

Got message from job at time 07-05-2023 13:47:34: Assembly stats for NA21309.2: Input-sample: NA21309.2.sanitized.fa Total-sequences: 15 Total-length: 100055744 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 11720318 Median-sequence-length: 5095905 Max-sequence-length: 22467485 Min-sequence-length: 39154

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG01978.2: Input-sample: HG01978.2.sanitized.fa Total-sequences: 5 Total-length: 98243486 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 29610711 Median-sequence-length: 27587804 Max-sequence-length: 34139899 Min-sequence-length: 502887

2023-07-05 13:47:34.558843: Successfully ran: "halAppendCactusSubtree /data/tmp/2a95a9ee729755068515bad92da082de/b021/c84e/tmpdaz9w8oy/Anc0.hal.c2h /data/tmp/2a95a9ee729755068515bad92da082de/b021/c84e/tmpdaz9w8oy/Anc0.hal.fa '(GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG01071.2:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01928.1:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02486.1:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02630.1:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG03098.2:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03579.1:0.025,NA21309.1:0.025,NA21309.2:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;' /data/tmp/2a95a9ee729755068515bad92da082de/b021/c84e/tmpdaz9w8oy/Anc0.hal --inMemory" in 2.5598 seconds and 69.4 Mi memory with job-memory 343.5 Mi. Percent utilization: 20.2
Got message from job at time 07-05-2023 13:47:34: Assembly stats for NA18906.1: Input-sample: NA18906.1.sanitized.fa Total-sequences: 8 Total-length: 182345889 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 52085021 Median-sequence-length: 11240248 Max-sequence-length: 59391182 Min-sequence-length: 29883

2023-07-05 13:47:34.559829: Running the command: "halSetMetadata /data/tmp/2a95a9ee729755068515bad92da082de/b021/c84e/tmpdaz9w8oy/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG03098.2: Input-sample: HG03098.2.sanitized.fa Total-sequences: 12 Total-length: 182089314 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 95222778 Median-sequence-length: 5254156 Max-sequence-length: 95222778 Min-sequence-length: 72204

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG02145.1: Input-sample: HG02145.1.sanitized.fa Total-sequences: 14 Total-length: 182836613 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20764127 Median-sequence-length: 11499014 Max-sequence-length: 36184930 Min-sequence-length: 22039

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG03492.1: Input-sample: HG03492.1.sanitized.fa Total-sequences: 18 Total-length: 182883003 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 25435688 Median-sequence-length: 4430331 Max-sequence-length: 51428230 Min-sequence-length: 26321

2023-07-05 13:47:34.645505: Successfully ran: "halSetMetadata /data/tmp/2a95a9ee729755068515bad92da082de/b021/c84e/tmpdaz9w8oy/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.0848 seconds and 5.5 Mi memory
2023-07-05 13:47:34.650429: Running the command: "halSetMetadata /data/tmp/2a95a9ee729755068515bad92da082de/b021/c84e/tmpdaz9w8oy/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG02486.2: Input-sample: HG02486.2.sanitized.fa Total-sequences: 8 Total-length: 181948101 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 95611193 Median-sequence-length: 11056305 Max-sequence-length: 95611193 Min-sequence-length: 397798

2023-07-05 13:47:34.656123: Successfully ran: "halSetMetadata /data/tmp/2a95a9ee729755068515bad92da082de/b021/c84e/tmpdaz9w8oy/Anc0.hal CACTUS_CONFIG 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 <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0047 seconds and 6.2 Mi memory
2023-07-05 13:47:34.656342: Running the command: "halRemoveDupes /data/tmp/2a95a9ee729755068515bad92da082de/b021/c84e/tmpdaz9w8oy/Anc0.hal GRCh38"
Got message from job at time 07-05-2023 13:47:34: Assembly stats for NA20129.1: Input-sample: NA20129.1.sanitized.fa Total-sequences: 11 Total-length: 103543658 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 17170644 Median-sequence-length: 11214415 Max-sequence-length: 27033563 Min-sequence-length: 26179

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG02109.1: Input-sample: HG02109.1.sanitized.fa Total-sequences: 13 Total-length: 96557237 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 13898479 Median-sequence-length: 4024258 Max-sequence-length: 22210343 Min-sequence-length: 44454

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG03579.1: Input-sample: HG03579.1.sanitized.fa Total-sequences: 7 Total-length: 97756216 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 26186452 Median-sequence-length: 17110952 Max-sequence-length: 27556430 Min-sequence-length: 519218

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG02080.1: Input-sample: HG02080.1.sanitized.fa Total-sequences: 7 Total-length: 97199848 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 23127962 Median-sequence-length: 14341271 Max-sequence-length: 29571404 Min-sequence-length: 363654

2023-07-05 13:47:34.758125: Successfully ran: "halRemoveDupes /data/tmp/2a95a9ee729755068515bad92da082de/b021/c84e/tmpdaz9w8oy/Anc0.hal GRCh38" in 0.1011 seconds and 7.0 Mi memory with job-memory 343.5 Mi. Percent utilization: 2.046
Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG02630.1: Input-sample: HG02630.1.sanitized.fa Total-sequences: 8 Total-length: 99467497 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 22017947 Median-sequence-length: 8213794 Max-sequence-length: 40761618 Min-sequence-length: 522954

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG02145.2: Input-sample: HG02145.2.sanitized.fa Total-sequences: 8 Total-length: 96854182 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 20703684 Median-sequence-length: 13291187 Max-sequence-length: 29046079 Min-sequence-length: 523955

Got message from job at time 07-05-2023 13:47:34: Assembly stats for HG01928.2: Input-sample: HG01928.2.sanitized.fa Total-sequences: 1 Total-length: 100895528 Proportion-repeat-masked: 0.000000 ProportionNs: 0.000000 Total-Ns: 0 N50: 100895528 Median-sequence-length: 100895528 Max-sequence-length: 100895528 Min-sequence-length: 100895528

Issued job 'cactus_cons' kind-cactus_cons/instance-k4cfhw3h v1 with job batch system ID: 2698 and disk: 38.4 Gi, memory: 404.4 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'export_vg' kind-export_vg/instance-5w2h0a5p v1 with job batch system ID: 2699 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 13:47:36.758588: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/GRCh38.fa HG00438.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00438.1.fa HG00438.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00438.2.fa HG00621.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00621.1.fa HG00621.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00621.2.fa HG00673.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00673.1.fa HG00673.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00673.2.fa HG00733.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00733.1.fa HG00733.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00733.2.fa HG00735.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00735.1.fa HG00735.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00735.2.fa HG00741.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00741.1.fa HG00741.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00741.2.fa HG01071.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01071.1.fa HG01071.2 /da <...> 999ba98b3759d207/1018/d328/tmpt9570j3p/Anc0.c2h.fa --outputReferenceFile /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chr22): Params file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/Anc0.config.xml
cactus_consolidated(chr22): Output file string : /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/Anc0.c2h
cactus_consolidated(chr22): Output hal fasta file string : /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/Anc0.c2h.fa
cactus_consolidated(chr22): Output reference fasta file string : /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/Anc0.ref
Malformed log message from 10.50.3.6
cactus_consolidated(chr22): Alignments file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/Anc0_primary.paf
cactus_consolidated(chr22): Secondary alignments file: (null)
cactus_consolidated(chr22): Constraint alignments file: (null)
cactus_consolidated(chr22): Species tree: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr22): Outgroup events:
cactus_consolidated(chr22): Reference event: Anc0
cactus_consolidated(chr22): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chr22): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chr22): Constructed the first flower
cactus_consolidated(chr22): Going to build the event tree with newick string: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr22): Parsed the tree
cactus_consolidated(chr22): Constructed the basic event tree
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/GRCh38.fa to GRCh38
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/GRCh38.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/GRCh38.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00438.1.fa to HG00438.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00438.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00438.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00438.2.fa to HG00438.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00438.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00621.1.fa to HG00621.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00621.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00621.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00621.2.fa to HG00621.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00621.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00621.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00673.1.fa to HG00673.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00673.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00673.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00673.2.fa to HG00673.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00673.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00673.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00733.1.fa to HG00733.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00733.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00733.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00733.2.fa to HG00733.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00733.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00733.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00735.1.fa to HG00735.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00735.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00735.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00735.2.fa to HG00735.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00735.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00735.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00741.1.fa to HG00741.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00741.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00741.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00741.2.fa to HG00741.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00741.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00741.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01071.1.fa to HG01071.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01071.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01071.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01071.2.fa to HG01071.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01071.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01071.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01106.1.fa to HG01106.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01106.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01106.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01106.2.fa to HG01106.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01106.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01109.1.fa to HG01109.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01109.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01109.2.fa to HG01109.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01109.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01123.1.fa to HG01123.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01123.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01123.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01123.2.fa to HG01123.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01123.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01123.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01175.1.fa to HG01175.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01175.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01175.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01175.2.fa to HG01175.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01175.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01175.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01243.1.fa to HG01243.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01243.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01243.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01243.2.fa to HG01243.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01243.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01243.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01258.1.fa to HG01258.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01258.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01258.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01258.2.fa to HG01258.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01258.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01258.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01358.1.fa to HG01358.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01358.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01358.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01358.2.fa to HG01358.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01358.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01358.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01361.1.fa to HG01361.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01361.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01361.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01361.2.fa to HG01361.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01361.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01361.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01891.1.fa to HG01891.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01891.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01891.1.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:47:45.898993: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/GRCh38.fa HG00438.1 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00438.1.fa HG00438.2 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00438.2.fa HG00621.1 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00621.1.fa HG00621.2 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00621.2.fa HG00673.1 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00673.1.fa HG00673.2 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00673.2.fa HG00733.1 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00733.1.fa HG00733.2 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00733.2.fa HG00735.1 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00735.1.fa HG00735.2 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00735.2.fa HG00741.1 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00741.1.fa HG00741.2 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00741.2.fa HG01071.1 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01071.1.fa HG01071.2 /da <...> 8515bad92da082de/4708/e5c9/tmp44talb0o/Anc0.c2h.fa --outputReferenceFile /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chr20): Params file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/Anc0.config.xml
cactus_consolidated(chr20): Output file string : /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/Anc0.c2h
cactus_consolidated(chr20): Output hal fasta file string : /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/Anc0.c2h.fa
cactus_consolidated(chr20): Output reference fasta file string : /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/Anc0.ref
Malformed log message from 10.50.3.11
cactus_consolidated(chr20): Alignments file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/Anc0_primary.paf
cactus_consolidated(chr20): Secondary alignments file: (null)
cactus_consolidated(chr20): Constraint alignments file: (null)
cactus_consolidated(chr20): Species tree: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr20): Outgroup events:
cactus_consolidated(chr20): Reference event: Anc0
cactus_consolidated(chr20): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chr20): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chr20): Constructed the first flower
cactus_consolidated(chr20): Going to build the event tree with newick string: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr20): Parsed the tree
cactus_consolidated(chr20): Constructed the basic event tree
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/GRCh38.fa to GRCh38
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/GRCh38.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/GRCh38.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01891.2.fa to HG01891.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01891.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01891.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01928.1.fa to HG01928.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01928.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01928.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00438.1.fa to HG00438.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00438.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00438.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01928.2.fa to HG01928.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01928.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01928.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01952.1.fa to HG01952.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01952.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01952.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00438.2.fa to HG00438.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00438.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01952.2.fa to HG01952.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01952.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01952.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01978.1.fa to HG01978.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01978.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01978.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00621.1.fa to HG00621.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00621.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00621.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01978.2.fa to HG01978.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01978.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG01978.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00621.2.fa to HG00621.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00621.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00621.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02055.1.fa to HG02055.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02055.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02055.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02055.2.fa to HG02055.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02055.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02055.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00673.1.fa to HG00673.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00673.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00673.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02080.2.fa to HG02080.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02080.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02080.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02109.1.fa to HG02109.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02109.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00673.2.fa to HG00673.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00673.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00673.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02109.2.fa to HG02109.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02109.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02145.1.fa to HG02145.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02145.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02145.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00733.1.fa to HG00733.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00733.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00733.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02145.2.fa to HG02145.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02145.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02145.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00733.2.fa to HG00733.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00733.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00733.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02148.1.fa to HG02148.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02148.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02148.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02148.2.fa to HG02148.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02148.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02148.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00735.1.fa to HG00735.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00735.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00735.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02257.1.fa to HG02257.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02257.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02257.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02257.2.fa to HG02257.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02257.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02257.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00735.2.fa to HG00735.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00735.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00735.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02486.1.fa to HG02486.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02486.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00741.1.fa to HG00741.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00741.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00741.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02486.2.fa to HG02486.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02486.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02559.1.fa to HG02559.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02559.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02559.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00741.2.fa to HG00741.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00741.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00741.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02559.2.fa to HG02559.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02559.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02559.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01071.1.fa to HG01071.1
2023-07-05 13:47:52.213143: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/GRCh38.fa HG00438.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00438.1.fa HG00438.2 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00438.2.fa HG00621.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00621.1.fa HG00621.2 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00621.2.fa HG00673.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00673.1.fa HG00673.2 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00673.2.fa HG00733.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00733.1.fa HG00733.2 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00733.2.fa HG00735.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00735.1.fa HG00735.2 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00735.2.fa HG00741.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00741.1.fa HG00741.2 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00741.2.fa HG01071.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01071.1.fa HG01071.2 /da <...> 9b41669e7d9612f5/9d71/9906/tmpaxappa9_/Anc0.c2h.fa --outputReferenceFile /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01071.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01071.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02572.1.fa to HG02572.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02572.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02572.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Params file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/Anc0.config.xml
cactus_consolidated(chr19): Output file string : /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/Anc0.c2h
cactus_consolidated(chr19): Output hal fasta file string : /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/Anc0.c2h.fa
cactus_consolidated(chr19): Output reference fasta file string : /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/Anc0.ref
Malformed log message from 10.50.3.15
cactus_consolidated(chr19): Alignments file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/Anc0_primary.paf
cactus_consolidated(chr19): Secondary alignments file: (null)
cactus_consolidated(chr19): Constraint alignments file: (null)
cactus_consolidated(chr19): Species tree: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr19): Outgroup events:
cactus_consolidated(chr19): Reference event: Anc0
cactus_consolidated(chr19): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chr19): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chr19): Constructed the first flower
cactus_consolidated(chr19): Going to build the event tree with newick string: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr19): Parsed the tree
cactus_consolidated(chr19): Constructed the basic event tree
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/GRCh38.fa to GRCh38
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/GRCh38.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/GRCh38.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02572.2.fa to HG02572.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02572.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02572.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01071.2.fa to HG01071.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01071.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01071.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00438.1.fa to HG00438.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00438.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00438.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02622.1.fa to HG02622.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02622.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02622.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02622.2.fa to HG02622.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02622.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02622.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00438.2.fa to HG00438.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00438.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01106.1.fa to HG01106.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01106.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01106.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02630.1.fa to HG02630.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02630.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02630.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00621.1.fa to HG00621.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00621.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00621.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01106.2.fa to HG01106.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01106.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02630.2.fa to HG02630.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02630.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02630.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00621.2.fa to HG00621.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00621.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00621.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02717.1.fa to HG02717.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02717.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02717.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01109.1.fa to HG01109.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01109.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02717.2.fa to HG02717.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02717.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02717.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00673.1.fa to HG00673.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00673.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00673.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02723.1.fa to HG02723.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02723.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02723.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01109.2.fa to HG01109.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01109.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02723.2.fa to HG02723.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02723.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02723.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00673.2.fa to HG00673.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00673.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00673.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01123.1.fa to HG01123.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01123.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01123.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02818.1.fa to HG02818.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02818.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02818.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02818.2.fa to HG02818.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02818.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02818.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00733.1.fa to HG00733.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00733.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00733.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01123.2.fa to HG01123.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01123.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01123.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02886.1.fa to HG02886.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02886.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02886.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00733.2.fa to HG00733.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00733.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00733.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02886.2.fa to HG02886.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02886.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02886.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01175.1.fa to HG01175.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01175.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01175.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03098.1.fa to HG03098.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03098.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03098.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00735.1.fa to HG00735.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00735.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00735.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03098.2.fa to HG03098.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03098.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03098.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01175.2.fa to HG01175.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01175.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01175.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00735.2.fa to HG00735.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00735.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00735.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03453.1.fa to HG03453.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03453.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03453.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01243.1.fa to HG01243.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01243.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01243.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03453.2.fa to HG03453.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03453.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03453.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00741.1.fa to HG00741.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00741.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00741.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03486.1.fa to HG03486.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03486.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01243.2.fa to HG01243.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01243.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01243.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00741.2.fa to HG00741.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00741.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00741.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03486.2.fa to HG03486.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03486.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03492.1.fa to HG03492.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03492.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03492.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01071.1.fa to HG01071.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01071.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01071.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01258.1.fa to HG01258.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01258.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01258.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03492.2.fa to HG03492.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03492.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03492.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01071.2.fa to HG01071.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01071.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01071.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03516.1.fa to HG03516.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03516.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03516.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01258.2.fa to HG01258.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01258.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01258.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03516.2.fa to HG03516.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03516.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03516.2.fa is specified incomplete, the sequences will not be attached
Estimating cactus_consolidated(chr4) memory as 476.8 Gi from 91 sequences with total-sequence-size 16.4 Gi and paf-size 311800823 using <conslidatedMemory> configuration settings
Estimating cactus_consolidated(chr13) memory as 444.8 Gi from 91 sequences with total-sequence-size 8.6 Gi and paf-size 175120740 using <conslidatedMemory> configuration settings
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01106.1.fa to HG01106.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01106.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01106.1.fa is specified incomplete, the sequences will not be attached
Estimating cactus_consolidated(chr5) memory as 476.8 Gi from 91 sequences with total-sequence-size 15.6 Gi and paf-size 270861043 using <conslidatedMemory> configuration settings
Estimating cactus_consolidated(chr2) memory as 476.8 Gi from 91 sequences with total-sequence-size 20.7 Gi and paf-size 372001184 using <conslidatedMemory> configuration settings
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01358.1.fa to HG01358.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01358.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01358.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03540.1.fa to HG03540.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03540.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03540.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01106.2.fa to HG01106.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01106.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03540.2.fa to HG03540.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03540.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03540.2.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:47:59.381063: Running the command: "hal2vg /data/tmp/2a95a9ee729755068515bad92da082de/9e7c/3918/tmpq3x7jwav/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
2023-07-05 13:47:59.436139: Running the command: "hal2vg /data/tmp/2a95a9ee729755068515bad92da082de/cc6d/ad6b/tmpcv6uz9ol/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01358.2.fa to HG01358.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01358.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01358.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03579.1.fa to HG03579.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03579.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03579.1.fa is specified incomplete, the sequences will not be attached
Estimating cactus_consolidated(chr6) memory as 476.8 Gi from 91 sequences with total-sequence-size 14.6 Gi and paf-size 286438525 using <conslidatedMemory> configuration settings
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01109.1.fa to HG01109.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01109.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01109.1.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:47:59.883816: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/GRCh38.fa HG00438.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00438.1.fa HG00438.2 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00438.2.fa HG00621.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00621.1.fa HG00621.2 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00621.2.fa HG00673.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00673.1.fa HG00673.2 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00673.2.fa HG00733.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00733.1.fa HG00733.2 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00733.2.fa HG00735.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00735.1.fa HG00735.2 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00735.2.fa HG00741.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00741.1.fa HG00741.2 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00741.2.fa HG01071.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01071.1.fa HG01071.2 /da <...> 8d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/Anc0.c2h.fa --outputReferenceFile /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03579.2.fa to HG03579.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03579.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG03579.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Params file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/Anc0.config.xml
cactus_consolidated(chr21): Output file string : /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/Anc0.c2h
cactus_consolidated(chr21): Output hal fasta file string : /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/Anc0.c2h.fa
cactus_consolidated(chr21): Output reference fasta file string : /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/Anc0.ref
Malformed log message from 10.50.3.13
cactus_consolidated(chr21): Alignments file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/Anc0_primary.paf
cactus_consolidated(chr21): Secondary alignments file: (null)
cactus_consolidated(chr21): Constraint alignments file: (null)
cactus_consolidated(chr21): Species tree: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr21): Outgroup events:
cactus_consolidated(chr21): Reference event: Anc0
cactus_consolidated(chr21): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chr21): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chr21): Constructed the first flower
cactus_consolidated(chr21): Going to build the event tree with newick string: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr21): Parsed the tree
cactus_consolidated(chr21): Constructed the basic event tree
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/GRCh38.fa to GRCh38
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/GRCh38.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/GRCh38.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01361.1.fa to HG01361.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01361.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01361.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/NA18906.1.fa to NA18906.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/NA18906.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/NA18906.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01109.2.fa to HG01109.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01109.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00438.1.fa to HG00438.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00438.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00438.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01361.2.fa to HG01361.2
Issued job 'cactus_cons' kind-cactus_cons/instance-9i6qfpil v1 with job batch system ID: 2700 and disk: 103.9 Gi, memory: 476.8 Gi, cores: 64, accelerators: [], preemptible: False
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01361.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01361.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/NA18906.2.fa to NA18906.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/NA18906.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/NA18906.2.fa is specified incomplete, the sequences will not be attached
Issued job 'cactus_cons' kind-cactus_cons/instance-0ty4zr0r v1 with job batch system ID: 2701 and disk: 82.4 Gi, memory: 476.8 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'cactus_cons' kind-cactus_cons/instance-vmmnygh2 v1 with job batch system ID: 2702 and disk: 78.3 Gi, memory: 476.8 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'cactus_cons' kind-cactus_cons/instance-gyugrxmn v1 with job batch system ID: 2703 and disk: 43.1 Gi, memory: 444.8 Gi, cores: 64, accelerators: [], preemptible: False
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00438.2.fa to HG00438.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00438.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01123.1.fa to HG01123.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01123.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01123.1.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:48:00.766151: Successfully ran: "hal2vg /data/tmp/2a95a9ee729755068515bad92da082de/9e7c/3918/tmpq3x7jwav/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 1.384 seconds and 58.0 Mi memory with job-memory 220.6 Mi. Percent utilization: 26.27
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/NA20129.1.fa to NA20129.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/NA20129.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/NA20129.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00621.1.fa to HG00621.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00621.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00621.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01891.1.fa to HG01891.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01891.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01891.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/NA20129.2.fa to NA20129.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/NA20129.2.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/NA20129.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01123.2.fa to HG01123.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01123.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01123.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00621.2.fa to HG00621.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00621.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00621.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/NA21309.1.fa to NA21309.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/NA21309.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/NA21309.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00673.1.fa to HG00673.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00673.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00673.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01891.2.fa to HG01891.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01891.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01891.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/NA21309.2.fa to NA21309.2
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/NA21309.2.fa
Issued job 'cactus_cons' kind-cactus_cons/instance-qwz2e14u v1 with job batch system ID: 2704 and disk: 73.8 Gi, memory: 476.8 Gi, cores: 64, accelerators: [], preemptible: False
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/NA21309.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01175.1.fa to HG01175.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01175.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01175.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00673.2.fa to HG00673.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00673.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00673.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/CHM13.fa to CHM13
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/CHM13.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/CHM13.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00733.1.fa to HG00733.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00733.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00733.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01175.2.fa to HG01175.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01175.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01175.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01928.1.fa to HG01928.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01928.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01928.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02080.1.fa to HG02080.1
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02080.1.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG02080.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00733.2.fa to HG00733.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00733.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00733.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01243.1.fa to HG01243.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01243.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01243.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00735.1.fa to HG00735.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00735.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00735.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01928.2.fa to HG01928.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01928.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01928.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/_MINIGRAPH_.fa to _MINIGRAPH_
cactus_consolidated(chr22): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/_MINIGRAPH_.fa
cactus_consolidated(chr22): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00735.2.fa to HG00735.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00735.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00735.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01243.2.fa to HG01243.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01243.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01243.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Constructed the initial flower with 8684 sequences and 93 events with string: ((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chr22): Established the first Flower in the hierarchy, 26 seconds have elapsed
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01952.1.fa to HG01952.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01952.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01952.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00741.1.fa to HG00741.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00741.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00741.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01258.1.fa to HG01258.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01258.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01258.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00741.2.fa to HG00741.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00741.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00741.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01952.2.fa to HG01952.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01952.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01952.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01071.1.fa to HG01071.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01071.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01071.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01258.2.fa to HG01258.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01258.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01258.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01071.2.fa to HG01071.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01071.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01071.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01978.1.fa to HG01978.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01978.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01978.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01358.1.fa to HG01358.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01358.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01358.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01106.1.fa to HG01106.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01106.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01106.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01978.2.fa to HG01978.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01978.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG01978.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01106.2.fa to HG01106.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01106.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01358.2.fa to HG01358.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01358.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01358.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01109.1.fa to HG01109.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01109.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02055.1.fa to HG02055.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02055.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02055.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01361.1.fa to HG01361.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01361.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01361.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01109.2.fa to HG01109.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01109.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Converted alignment coordinates, 29 seconds have elapsed
cactus_consolidated(chr22): Stripped any unique IDs, 29 seconds have elapsed
cactus_consolidated(chr22): We found a max path distance between ingroups in the tree (((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;) of 0.050000, giving us and min final chain length of: 2048
cactus_consolidated(chr22): Starting annealing round with a minimum chain length of 2048 and an alignment trim of 3
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01123.1.fa to HG01123.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01123.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01123.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02055.2.fa to HG02055.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02055.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02055.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01361.2.fa to HG01361.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01361.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01361.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01123.2.fa to HG01123.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01123.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01123.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01891.1.fa to HG01891.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01891.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01891.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02080.2.fa to HG02080.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02080.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02080.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01175.1.fa to HG01175.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01175.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01175.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01175.2.fa to HG01175.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01175.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01175.2.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:48:06.330857: Successfully ran: "hal2vg /data/tmp/2a95a9ee729755068515bad92da082de/cc6d/ad6b/tmpcv6uz9ol/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 6.8935 seconds and 189.5 Mi memory with job-memory 970.9 Mi. Percent utilization: 19.52
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01891.2.fa to HG01891.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01891.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01891.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02109.1.fa to HG02109.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02109.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01243.1.fa to HG01243.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01243.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01243.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01243.2.fa to HG01243.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01243.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01243.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02109.2.fa to HG02109.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02109.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01928.1.fa to HG01928.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01928.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01928.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01258.1.fa to HG01258.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01258.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01258.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02145.1.fa to HG02145.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02145.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02145.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01928.2.fa to HG01928.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01928.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01928.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01258.2.fa to HG01258.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01258.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01258.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01358.1.fa to HG01358.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01358.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01358.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01952.1.fa to HG01952.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01952.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01952.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02145.2.fa to HG02145.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02145.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02145.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01358.2.fa to HG01358.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01358.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01358.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrY): Ran cactus make reference bottom up coordinates, 75 seconds have elapsed
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01361.1.fa to HG01361.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01361.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01361.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01952.2.fa to HG01952.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01952.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01952.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02148.1.fa to HG02148.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02148.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02148.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrY): Ran cactus make reference top down coordinates, 75 seconds have elapsed
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01361.2.fa to HG01361.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01361.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01361.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01978.1.fa to HG01978.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01978.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01978.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01891.1.fa to HG01891.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01891.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01891.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02148.2.fa to HG02148.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02148.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02148.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrY): Ran cactus to hal stage, 76 seconds have elapsed
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01891.2.fa to HG01891.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01891.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01891.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01978.2.fa to HG01978.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01978.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG01978.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02257.1.fa to HG02257.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02257.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02257.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01928.1.fa to HG01928.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01928.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01928.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02055.1.fa to HG02055.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02055.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02055.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01928.2.fa to HG01928.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01928.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01928.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02257.2.fa to HG02257.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02257.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02257.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01952.1.fa to HG01952.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01952.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01952.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02055.2.fa to HG02055.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02055.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02055.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01952.2.fa to HG01952.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01952.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01952.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02486.1.fa to HG02486.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02486.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01978.1.fa to HG01978.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01978.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01978.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02080.2.fa to HG02080.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02080.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02080.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrY): Dumped sequences for hal file, 77 seconds have elapsed
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01978.2.fa to HG01978.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01978.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG01978.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02486.2.fa to HG02486.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02486.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02055.1.fa to HG02055.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02055.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02055.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02109.1.fa to HG02109.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02109.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrY): Dumped reference sequences, 78 seconds have elapsed
cactus_consolidated(chrY): Cactus consolidated is done!, 78 seconds have elapsed
2023-07-05 13:48:11.256776: Successfully ran cactus_consolidated(chrY): "cactus_consolidated --sequences 'GRCh38 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/GRCh38.fa HG00621.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG00621.1.fa HG00673.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG00673.1.fa HG00733.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG00733.1.fa HG01106.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01106.1.fa HG01106.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01106.2.fa HG01109.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01109.1.fa HG01243.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01243.1.fa HG01258.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01258.1.fa HG01358.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01358.1.fa HG01928.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01928.1.fa HG01952.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG01952.1.fa HG02055.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG02055.1.fa HG02145.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/HG <...> 67250f1999ba98b3759d207/8c27/871f/tmpezqf6eap/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 77.8694 seconds and 20.0 Gi memory with job-memory 94.7 Gi. Percent utilization: 21.08
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02055.2.fa to HG02055.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02055.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02055.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02559.1.fa to HG02559.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02559.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02559.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02109.2.fa to HG02109.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02109.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02080.2.fa to HG02080.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02080.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02080.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02559.2.fa to HG02559.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02559.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02559.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02109.1.fa to HG02109.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02109.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02145.1.fa to HG02145.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02145.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02145.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02109.2.fa to HG02109.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02109.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02145.2.fa to HG02145.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02145.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02145.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02572.1.fa to HG02572.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02572.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02572.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02145.1.fa to HG02145.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02145.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02145.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02145.2.fa to HG02145.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02145.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02145.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02148.1.fa to HG02148.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02148.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02148.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02572.2.fa to HG02572.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02572.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02572.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02148.1.fa to HG02148.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02148.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02148.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02148.2.fa to HG02148.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02148.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02148.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02148.2.fa to HG02148.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02148.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02148.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02622.1.fa to HG02622.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02622.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02622.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02257.1.fa to HG02257.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02257.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02257.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02257.1.fa to HG02257.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02257.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02257.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02622.2.fa to HG02622.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02622.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02622.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02257.2.fa to HG02257.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02257.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02257.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02257.2.fa to HG02257.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02257.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02257.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02486.1.fa to HG02486.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02486.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02630.1.fa to HG02630.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02630.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02630.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02486.2.fa to HG02486.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02486.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02486.1.fa to HG02486.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02486.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02630.2.fa to HG02630.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02630.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02630.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02559.1.fa to HG02559.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02559.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02559.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02486.2.fa to HG02486.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02486.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02486.2.fa is specified incomplete, the sequences will not be attached
Got message from job at time 07-05-2023 13:48:15: Ran cactus consolidated okay
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02559.2.fa to HG02559.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02559.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02559.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02717.1.fa to HG02717.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02717.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02717.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02572.1.fa to HG02572.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02572.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02572.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02559.1.fa to HG02559.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02559.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02559.1.fa is specified incomplete, the sequences will not be attached
Issued job 'export_hal' kind-export_hal/instance-riknqeur v1 with job batch system ID: 2705 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02572.2.fa to HG02572.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02572.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02572.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02717.2.fa to HG02717.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02717.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02717.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02559.2.fa to HG02559.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02559.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02559.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02622.1.fa to HG02622.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02622.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02622.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02622.2.fa to HG02622.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02622.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02622.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02723.1.fa to HG02723.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02723.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02723.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02572.1.fa to HG02572.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02572.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02572.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02630.1.fa to HG02630.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02630.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02630.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02723.2.fa to HG02723.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02723.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02723.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02572.2.fa to HG02572.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02572.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02572.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02630.2.fa to HG02630.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02630.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02630.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02717.1.fa to HG02717.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02717.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02717.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02622.1.fa to HG02622.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02622.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02622.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02818.1.fa to HG02818.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02818.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02818.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02717.2.fa to HG02717.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02717.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02717.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02723.1.fa to HG02723.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02723.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02723.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02818.2.fa to HG02818.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02818.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02818.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02622.2.fa to HG02622.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02622.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02622.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02723.2.fa to HG02723.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02723.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02723.2.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:48:17.910980: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/GRCh38.fa HG00438.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00438.1.fa HG00438.2 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00438.2.fa HG00621.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00621.1.fa HG00621.2 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00621.2.fa HG00673.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00673.1.fa HG00673.2 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00673.2.fa HG00733.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00733.1.fa HG00733.2 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00733.2.fa HG00735.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00735.1.fa HG00735.2 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00735.2.fa HG00741.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00741.1.fa HG00741.2 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00741.2.fa HG01071.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01071.1.fa HG01071.2 /da <...> 9b41669e7d9612f5/7246/b79f/tmp81px0rc4/Anc0.c2h.fa --outputReferenceFile /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chr10): Params file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/Anc0.config.xml
cactus_consolidated(chr10): Output file string : /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/Anc0.c2h
cactus_consolidated(chr10): Output hal fasta file string : /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/Anc0.c2h.fa
cactus_consolidated(chr10): Output reference fasta file string : /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/Anc0.ref
Malformed log message from 10.50.3.15
cactus_consolidated(chr10): Alignments file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/Anc0_primary.paf
cactus_consolidated(chr10): Secondary alignments file: (null)
cactus_consolidated(chr10): Constraint alignments file: (null)
cactus_consolidated(chr10): Species tree: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr10): Outgroup events:
cactus_consolidated(chr10): Reference event: Anc0
cactus_consolidated(chr10): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chr10): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chr10): Constructed the first flower
cactus_consolidated(chr10): Going to build the event tree with newick string: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr10): Parsed the tree
cactus_consolidated(chr10): Constructed the basic event tree
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/GRCh38.fa to GRCh38
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/GRCh38.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/GRCh38.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02886.1.fa to HG02886.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02886.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02886.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02630.1.fa to HG02630.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02630.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02630.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02818.1.fa to HG02818.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02818.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02818.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02818.2.fa to HG02818.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02818.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02818.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02630.2.fa to HG02630.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02630.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02630.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02886.2.fa to HG02886.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02886.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02886.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02886.1.fa to HG02886.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02886.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02886.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00438.1.fa to HG00438.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00438.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00438.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02886.2.fa to HG02886.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02886.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02886.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02717.1.fa to HG02717.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02717.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02717.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03098.1.fa to HG03098.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03098.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03098.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03098.1.fa to HG03098.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03098.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03098.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02717.2.fa to HG02717.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02717.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02717.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03098.2.fa to HG03098.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03098.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03098.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03098.2.fa to HG03098.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03098.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03098.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00438.2.fa to HG00438.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00438.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02723.1.fa to HG02723.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02723.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02723.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03453.1.fa to HG03453.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03453.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03453.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03453.1.fa to HG03453.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03453.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03453.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03453.2.fa to HG03453.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03453.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03453.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02723.2.fa to HG02723.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02723.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02723.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03486.1.fa to HG03486.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03486.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03453.2.fa to HG03453.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03453.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03453.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03486.2.fa to HG03486.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03486.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02818.1.fa to HG02818.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02818.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02818.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00621.1.fa to HG00621.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00621.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00621.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03492.1.fa to HG03492.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03492.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03492.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03486.1.fa to HG03486.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03486.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02818.2.fa to HG02818.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02818.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02818.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03492.2.fa to HG03492.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03492.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03492.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03486.2.fa to HG03486.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03486.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03516.1.fa to HG03516.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03516.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03516.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02886.1.fa to HG02886.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02886.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02886.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03516.2.fa to HG03516.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03516.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03516.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00621.2.fa to HG00621.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00621.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00621.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03492.1.fa to HG03492.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03492.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03492.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02886.2.fa to HG02886.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02886.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02886.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03540.1.fa to HG03540.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03540.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03540.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03540.2.fa to HG03540.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03540.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03540.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03492.2.fa to HG03492.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03492.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03492.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03098.1.fa to HG03098.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03098.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03098.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03579.1.fa to HG03579.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03579.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03579.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00673.1.fa to HG00673.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00673.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00673.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03579.2.fa to HG03579.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03579.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG03579.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03516.1.fa to HG03516.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03516.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03516.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03098.2.fa to HG03098.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03098.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03098.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Sequence graph statistics after annealing:
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/NA18906.1.fa to NA18906.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/NA18906.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/NA18906.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03516.2.fa to HG03516.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03516.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03516.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03453.1.fa to HG03453.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03453.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03453.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/NA18906.2.fa to NA18906.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/NA18906.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/NA18906.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/NA20129.1.fa to NA20129.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/NA20129.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/NA20129.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00673.2.fa to HG00673.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00673.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00673.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03453.2.fa to HG03453.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03453.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03453.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03540.1.fa to HG03540.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03540.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03540.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/NA20129.2.fa to NA20129.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/NA20129.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/NA20129.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03486.1.fa to HG03486.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03486.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/NA21309.1.fa to NA21309.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/NA21309.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/NA21309.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03540.2.fa to HG03540.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03540.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03540.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/NA21309.2.fa to NA21309.2
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/NA21309.2.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/NA21309.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03486.2.fa to HG03486.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03486.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00733.1.fa to HG00733.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00733.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00733.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03579.1.fa to HG03579.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03579.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03579.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/CHM13.fa to CHM13
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/CHM13.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/CHM13.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03492.1.fa to HG03492.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03492.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03492.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02080.1.fa to HG02080.1
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02080.1.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG02080.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03579.2.fa to HG03579.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03579.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG03579.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/_MINIGRAPH_.fa to _MINIGRAPH_
cactus_consolidated(chr21): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/_MINIGRAPH_.fa
cactus_consolidated(chr21): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03492.2.fa to HG03492.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03492.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03492.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00733.2.fa to HG00733.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00733.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00733.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/NA18906.1.fa to NA18906.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/NA18906.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/NA18906.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Constructed the initial flower with 7871 sequences and 93 events with string: ((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chr21): Established the first Flower in the hierarchy, 26 seconds have elapsed
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03516.1.fa to HG03516.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03516.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03516.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/NA18906.2.fa to NA18906.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/NA18906.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/NA18906.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03516.2.fa to HG03516.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03516.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03516.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00735.1.fa to HG00735.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00735.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00735.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/NA20129.1.fa to NA20129.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/NA20129.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/NA20129.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03540.1.fa to HG03540.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03540.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03540.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/NA20129.2.fa to NA20129.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/NA20129.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/NA20129.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03540.2.fa to HG03540.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03540.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03540.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/NA21309.1.fa to NA21309.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/NA21309.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/NA21309.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00735.2.fa to HG00735.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00735.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00735.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03579.1.fa to HG03579.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03579.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03579.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Converted alignment coordinates, 28 seconds have elapsed
cactus_consolidated(chr21): Stripped any unique IDs, 28 seconds have elapsed
cactus_consolidated(chr21): We found a max path distance between ingroups in the tree (((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;) of 0.050000, giving us and min final chain length of: 2048
cactus_consolidated(chr21): Starting annealing round with a minimum chain length of 2048 and an alignment trim of 3
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/NA21309.2.fa to NA21309.2
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/NA21309.2.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/NA21309.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03579.2.fa to HG03579.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03579.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG03579.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/CHM13.fa to CHM13
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/CHM13.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/CHM13.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00741.1.fa to HG00741.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00741.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00741.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/NA18906.1.fa to NA18906.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/NA18906.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/NA18906.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02080.1.fa to HG02080.1
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02080.1.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG02080.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/NA18906.2.fa to NA18906.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/NA18906.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/NA18906.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/_MINIGRAPH_.fa to _MINIGRAPH_
cactus_consolidated(chr20): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/_MINIGRAPH_.fa
cactus_consolidated(chr20): The file /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/NA20129.1.fa to NA20129.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/NA20129.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/NA20129.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00741.2.fa to HG00741.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00741.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00741.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/NA20129.2.fa to NA20129.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/NA20129.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/NA20129.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Constructed the initial flower with 14302 sequences and 93 events with string: ((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chr20): Established the first Flower in the hierarchy, 45 seconds have elapsed
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/NA21309.1.fa to NA21309.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/NA21309.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/NA21309.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01071.1.fa to HG01071.1
Issued job 'export_hal' kind-export_hal/instance-a98jxzja v1 with job batch system ID: 2706 and disk: 2.3 Gi, memory: 3.8 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01071.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01071.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/NA21309.2.fa to NA21309.2
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/NA21309.2.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/NA21309.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/CHM13.fa to CHM13
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/CHM13.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/CHM13.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01071.2.fa to HG01071.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01071.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01071.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02080.1.fa to HG02080.1
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02080.1.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG02080.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/_MINIGRAPH_.fa to _MINIGRAPH_
cactus_consolidated(chr19): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/_MINIGRAPH_.fa
cactus_consolidated(chr19): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Constructed the initial flower with 14603 sequences and 93 events with string: ((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01106.1.fa to HG01106.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01106.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01106.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Established the first Flower in the hierarchy, 40 seconds have elapsed
cactus_consolidated(chr20): Converted alignment coordinates, 48 seconds have elapsed
cactus_consolidated(chr20): Stripped any unique IDs, 48 seconds have elapsed
cactus_consolidated(chr20): We found a max path distance between ingroups in the tree (((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;) of 0.050000, giving us and min final chain length of: 2048
cactus_consolidated(chr20): Starting annealing round with a minimum chain length of 2048 and an alignment trim of 3
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01106.2.fa to HG01106.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01106.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): There were 280924 blocks in the sequence graph, representing 3241545742 total aligned bases
cactus_consolidated(chr22): Block degree stats: min 1, avg 66.172595, median 81, max 102
cactus_consolidated(chr22): Block support stats: min 0.000000, avg 0.026347, median 0.011765, max 0.500000
cactus_consolidated(chr22): Starting melting round with a minimum chain length of 2
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01109.1.fa to HG01109.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01109.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01109.2.fa to HG01109.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01109.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Converted alignment coordinates, 44 seconds have elapsed
cactus_consolidated(chr19): Stripped any unique IDs, 44 seconds have elapsed
cactus_consolidated(chr19): We found a max path distance between ingroups in the tree (((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;) of 0.050000, giving us and min final chain length of: 2048
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01123.1.fa to HG01123.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01123.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01123.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Starting annealing round with a minimum chain length of 2048 and an alignment trim of 3
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01123.2.fa to HG01123.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01123.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01123.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01175.1.fa to HG01175.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01175.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01175.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01175.2.fa to HG01175.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01175.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01175.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01243.1.fa to HG01243.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01243.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01243.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01243.2.fa to HG01243.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01243.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01243.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01258.1.fa to HG01258.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01258.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01258.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01258.2.fa to HG01258.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01258.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01258.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): A melting round is destroying 61663 blocks with an average degree of 65.408430 from chains with length less than 2. Total aligned bases lost: 4033280
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01358.1.fa to HG01358.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01358.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01358.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01358.2.fa to HG01358.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01358.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01358.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01361.1.fa to HG01361.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01361.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01361.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01361.2.fa to HG01361.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01361.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01361.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Starting melting round with a minimum chain length of 32
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01891.1.fa to HG01891.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01891.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01891.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01891.2.fa to HG01891.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01891.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01891.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01928.1.fa to HG01928.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01928.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01928.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Sequence graph statistics after annealing:
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01928.2.fa to HG01928.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01928.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01928.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01952.1.fa to HG01952.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01952.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01952.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01952.2.fa to HG01952.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01952.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01952.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01978.1.fa to HG01978.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01978.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01978.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01978.2.fa to HG01978.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01978.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG01978.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02055.1.fa to HG02055.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02055.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02055.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02055.2.fa to HG02055.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02055.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02055.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): A melting round is destroying 130241 blocks with an average degree of 67.585975 from chains with length less than 32. Total aligned bases lost: 45455864
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02080.2.fa to HG02080.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02080.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02080.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Sequence graph statistics after annealing:
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02109.1.fa to HG02109.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02109.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02109.2.fa to HG02109.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02109.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02145.1.fa to HG02145.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02145.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02145.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02145.2.fa to HG02145.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02145.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02145.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Starting melting round with a minimum chain length of 512
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02148.1.fa to HG02148.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02148.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02148.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02148.2.fa to HG02148.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02148.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02148.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02257.1.fa to HG02257.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02257.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02257.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): There were 288838 blocks in the sequence graph, representing 3215518033 total aligned bases
cactus_consolidated(chr21): Block degree stats: min 1, avg 88.895879, median 84, max 483
cactus_consolidated(chr21): Block support stats: min 0.000000, avg 0.024205, median 0.011494, max 0.500000
cactus_consolidated(chr21): Starting melting round with a minimum chain length of 2
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02257.2.fa to HG02257.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02257.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02257.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02486.1.fa to HG02486.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02486.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02486.2.fa to HG02486.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02486.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02559.1.fa to HG02559.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02559.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02559.1.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:49:09.890992: Running the command: "halAppendCactusSubtree /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/7eb5/0d12/tmpyiuskgxw/Anc0.hal.c2h /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/7eb5/0d12/tmpyiuskgxw/Anc0.hal.fa (GRCh38:0.025,HG00621.1:0.025,HG00673.1:0.025,HG00733.1:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01243.1:0.025,HG01258.1:0.025,HG01358.1:0.025,HG01928.1:0.025,HG01952.1:0.025,HG02055.1:0.025,HG02145.1:0.025,HG02486.1:0.025,HG02572.1:0.025,HG02717.1:0.025,HG03098.1:0.025,HG03492.1:0.025,HG03579.1:0.025,CHM13:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/7eb5/0d12/tmpyiuskgxw/Anc0.hal --inMemory"
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02559.2.fa to HG02559.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02559.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02559.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): A melting round is destroying 8145 blocks with an average degree of 39.709883 from chains with length less than 512. Total aligned bases lost: 15711541
cactus_consolidated(chr19): Sequence graph statistics after annealing:
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02572.1.fa to HG02572.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02572.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02572.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02572.2.fa to HG02572.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02572.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02572.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02622.1.fa to HG02622.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02622.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02622.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02622.2.fa to HG02622.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02622.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02622.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): There were 416232 blocks in the sequence graph, representing 5562218378 total aligned bases
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02630.1.fa to HG02630.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02630.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02630.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Block degree stats: min 1, avg 64.589580, median 79, max 94
cactus_consolidated(chr20): Block support stats: min 0.000000, avg 0.026758, median 0.011905, max 0.500000
cactus_consolidated(chr20): Starting melting round with a minimum chain length of 2
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02630.2.fa to HG02630.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02630.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02630.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02717.1.fa to HG02717.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02717.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02717.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02717.2.fa to HG02717.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02717.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02717.2.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:49:18.293439: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/GRCh38.fa HG00438.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00438.1.fa HG00438.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00438.2.fa HG00621.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00621.1.fa HG00621.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00621.2.fa HG00673.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00673.1.fa HG00673.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00673.2.fa HG00733.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00733.1.fa HG00733.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00733.2.fa HG00735.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00735.1.fa HG00735.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00735.2.fa HG00741.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00741.1.fa HG00741.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00741.2.fa HG01071.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01071.1.fa HG01071.2 /da <...> ac396e74254b92ca/1a56/4963/tmp9w2tim1r/Anc0.c2h.fa --outputReferenceFile /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chr12): Params file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/Anc0.config.xml
cactus_consolidated(chr12): Output file string : /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/Anc0.c2h
cactus_consolidated(chr12): Output hal fasta file string : /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/Anc0.c2h.fa
cactus_consolidated(chr12): Output reference fasta file string : /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/Anc0.ref
Malformed log message from 10.50.3.12
cactus_consolidated(chr12): Alignments file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/Anc0_primary.paf
cactus_consolidated(chr12): Secondary alignments file: (null)
cactus_consolidated(chr12): Constraint alignments file: (null)
cactus_consolidated(chr12): Species tree: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr12): Outgroup events:
cactus_consolidated(chr12): Reference event: Anc0
cactus_consolidated(chr12): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chr12): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chr12): Constructed the first flower
cactus_consolidated(chr12): Going to build the event tree with newick string: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr12): Parsed the tree
cactus_consolidated(chr12): Constructed the basic event tree
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/GRCh38.fa to GRCh38
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/GRCh38.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/GRCh38.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): A melting round is destroying 68153 blocks with an average degree of 91.783179 from chains with length less than 2. Total aligned bases lost: 6255299
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02723.1.fa to HG02723.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02723.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02723.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00438.1.fa to HG00438.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00438.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00438.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02723.2.fa to HG02723.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02723.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02723.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00438.2.fa to HG00438.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00438.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02818.1.fa to HG02818.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02818.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02818.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00621.1.fa to HG00621.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00621.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00621.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02818.2.fa to HG02818.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02818.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02818.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00621.2.fa to HG00621.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00621.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00621.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02886.1.fa to HG02886.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02886.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02886.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00673.1.fa to HG00673.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00673.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00673.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02886.2.fa to HG02886.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02886.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02886.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Starting melting round with a minimum chain length of 32
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00673.2.fa to HG00673.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00673.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00673.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03098.1.fa to HG03098.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03098.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03098.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00733.1.fa to HG00733.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00733.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00733.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03098.2.fa to HG03098.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03098.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03098.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00733.2.fa to HG00733.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00733.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00733.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03453.1.fa to HG03453.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03453.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03453.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00735.1.fa to HG00735.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00735.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00735.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): A melting round is destroying 2056 blocks with an average degree of 48.090467 from chains with length less than 2048. Total aligned bases lost: 17497007
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03453.2.fa to HG03453.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03453.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03453.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00735.2.fa to HG00735.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00735.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00735.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03486.1.fa to HG03486.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03486.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00741.1.fa to HG00741.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00741.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00741.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03486.2.fa to HG03486.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03486.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03486.2.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:49:29.590730: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/GRCh38.fa HG00438.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00438.1.fa HG00438.2 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00438.2.fa HG00621.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00621.1.fa HG00621.2 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00621.2.fa HG00673.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00673.1.fa HG00673.2 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00673.2.fa HG00733.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00733.1.fa HG00733.2 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00733.2.fa HG00735.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00735.1.fa HG00735.2 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00735.2.fa HG00741.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00741.1.fa HG00741.2 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00741.2.fa HG01071.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01071.1.fa HG01071.2 /da <...> a1fc324d5464836c/72cd/a348/tmpg2wvktvl/Anc0.c2h.fa --outputReferenceFile /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chr11): Params file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/Anc0.config.xml
cactus_consolidated(chr11): Output file string : /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/Anc0.c2h
cactus_consolidated(chr11): Output hal fasta file string : /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/Anc0.c2h.fa
cactus_consolidated(chr11): Output reference fasta file string : /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/Anc0.ref
Malformed log message from 10.50.3.17
cactus_consolidated(chr11): Alignments file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/Anc0_primary.paf
cactus_consolidated(chr11): Secondary alignments file: (null)
cactus_consolidated(chr11): Constraint alignments file: (null)
cactus_consolidated(chr11): Species tree: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr11): Outgroup events:
cactus_consolidated(chr11): Reference event: Anc0
cactus_consolidated(chr11): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chr11): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chr11): Constructed the first flower
cactus_consolidated(chr11): Going to build the event tree with newick string: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr11): Parsed the tree
cactus_consolidated(chr11): Constructed the basic event tree
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/GRCh38.fa to GRCh38
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/GRCh38.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/GRCh38.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): A melting round is destroying 91933 blocks with an average degree of 65.227742 from chains with length less than 2. Total aligned bases lost: 5996582
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00741.2.fa to HG00741.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00741.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00741.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03492.1.fa to HG03492.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03492.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03492.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00438.1.fa to HG00438.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00438.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00438.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01071.1.fa to HG01071.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01071.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01071.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03492.2.fa to HG03492.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03492.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03492.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00438.2.fa to HG00438.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00438.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): There were 530767 blocks in the sequence graph, representing 5107112257 total aligned bases
cactus_consolidated(chr19): Block degree stats: min 1, avg 67.746160, median 82, max 97
cactus_consolidated(chr19): Block support stats: min 0.000000, avg 0.024343, median 0.011765, max 0.500000
cactus_consolidated(chr19): Starting melting round with a minimum chain length of 2
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01071.2.fa to HG01071.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01071.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01071.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03516.1.fa to HG03516.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03516.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03516.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00621.1.fa to HG00621.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00621.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00621.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01106.1.fa to HG01106.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01106.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01106.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03516.2.fa to HG03516.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03516.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03516.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00621.2.fa to HG00621.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00621.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00621.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01106.2.fa to HG01106.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01106.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03540.1.fa to HG03540.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03540.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03540.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00673.1.fa to HG00673.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00673.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00673.1.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:49:35.228199: Successfully ran: "halAppendCactusSubtree /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/7eb5/0d12/tmpyiuskgxw/Anc0.hal.c2h /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/7eb5/0d12/tmpyiuskgxw/Anc0.hal.fa '(GRCh38:0.025,HG00621.1:0.025,HG00673.1:0.025,HG00733.1:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01243.1:0.025,HG01258.1:0.025,HG01358.1:0.025,HG01928.1:0.025,HG01952.1:0.025,HG02055.1:0.025,HG02145.1:0.025,HG02486.1:0.025,HG02572.1:0.025,HG02717.1:0.025,HG03098.1:0.025,HG03492.1:0.025,HG03579.1:0.025,CHM13:0.025,_MINIGRAPH_:0.025)Anc0;' /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/7eb5/0d12/tmpyiuskgxw/Anc0.hal --inMemory" in 25.3361 seconds and 484.9 Mi memory with job-memory 3.8 Gi. Percent utilization: 12.42
2023-07-05 13:49:35.228538: Running the command: "halSetMetadata /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/7eb5/0d12/tmpyiuskgxw/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01109.1.fa to HG01109.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01109.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01109.1.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:49:35.339290: Successfully ran: "halSetMetadata /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/7eb5/0d12/tmpyiuskgxw/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.1102 seconds and 5.5 Mi memory
2023-07-05 13:49:35.343445: Running the command: "halSetMetadata /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/7eb5/0d12/tmpyiuskgxw/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 13:49:35.347791: Successfully ran: "halSetMetadata /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/7eb5/0d12/tmpyiuskgxw/Anc0.hal CACTUS_CONFIG PD94bWwgdmVyc2lvbj0iMS4wIiA/Pgo8Y2FjdHVzV29ya2Zsb3dDb25maWcgZGlzdGFuY2VUb0FkZFRvUm9vdEFsaWdubWVudD0iMC4xIj4KCTxjb25zdGFudHMgZGVmYXVsdE1lbW9yeT0iMzUwMDAwMDAwMCIgZGVmYXVsdE92ZXJsYXJnZU1lbW9yeT0iMzUwMDAwMDAwMCIgZGVmYXVsdENwdT0iMSIgZGVmYXVsdE92ZXJsYXJnZUNwdT0iMSI+CgkJICAKCQk8ZGl2ZXJnZW5jZXMgdXNlRGVmYXVsdD0iMCIgb25lPSIwLjEiIHR3bz0iMC4xNSIgdGhyZWU9IjAuMiIgZm91cj0iMC4yNSIgZml2ZT0iMC4zNSIvPgoJPC9jb25zdGFudHM+Cgk8cHJlcHJvY2Vzc29yIG1lbW9yeT0iMjAwMDAwMDAwMCIgcHJlcHJvY2Vzc0pvYj0iY3V0SGVhZGVycyIgY3V0QmVmb3JlPSIiIGN1dEFmdGVyPSIgICIgYWN0aXZlPSIxIi8+Cgk8cHJlcHJvY2Vzc29yIG1lbW9yeT0iMjAwMDAwMDAwMCIgcHJlcHJvY2Vzc0pvYj0iY2hlY2tVbmlxdWVIZWFkZXJzIiBjaGVja0Fzc2VtYmx5SHViPSIxIiBhY3RpdmU9IjEiLz4KCTxwcmVwcm9jZXNzb3IgdW5tYXNrPSIwIiBjaHVua1NpemU9IjEwMDAwMDAwIiBwcm9wb3J0aW9uVG9TYW1wbGU9IjAuMiIgbWVtb3J5PSIyMDAwMDAwMDAwIiBwcmVwcm9jZXNzSm9iPSJsYXN0elJlcGVhdE1hc2siIG1pblBlcmlvZD0iNTAiIGxhc3R6T3B0cz0iLS1zdGVwPTMgLS1hbWJpZ3VvdXM9aXVwYWMsMTAwLDEwMCAtLXVuZ2FwcGVkIC0tcXVlcnloc3BsaW1pdD1rZWVwLG5vd2FybjoxNTAwIiBncHU9IjAiIGFjdGl2ZT0iMSIvPgoJPHByZXByb2Nlc3NvciB1bm1hc2s9IjEiIG1lbW9yeT0iMjAwMDAwMDAwMCIgcHJlcHJvY2Vzc0pvYj0iZG5hLWJybm4iIGRuYS1icm5uT3B0cz0iLUEiIGFjdGl2ZT0iMCIgYWN0aW9uPSJzb2Z0bWFzayI <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0036 seconds and 5.9 Mi memory
2023-07-05 13:49:35.347964: Running the command: "halRemoveDupes /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/7eb5/0d12/tmpyiuskgxw/Anc0.hal GRCh38"
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03540.2.fa to HG03540.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03540.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03540.2.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:49:35.469780: Successfully ran: "halRemoveDupes /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/7eb5/0d12/tmpyiuskgxw/Anc0.hal GRCh38" in 0.1212 seconds and 7.9 Mi memory with job-memory 3.8 Gi. Percent utilization: 0.2025
cactus_consolidated(chr20): Starting melting round with a minimum chain length of 32
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00673.2.fa to HG00673.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00673.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00673.2.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:49:35.687419: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/GRCh38.fa HG00438.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00438.1.fa HG00438.2 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00438.2.fa HG00621.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00621.1.fa HG00621.2 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00621.2.fa HG00673.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00673.1.fa HG00673.2 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00673.2.fa HG00733.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00733.1.fa HG00733.2 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00733.2.fa HG00735.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00735.1.fa HG00735.2 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00735.2.fa HG00741.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00741.1.fa HG00741.2 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00741.2.fa HG01071.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01071.1.fa HG01071.2 /da <...> a1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/Anc0.c2h.fa --outputReferenceFile /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chr17): Params file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/Anc0.config.xml
cactus_consolidated(chr17): Output file string : /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/Anc0.c2h
cactus_consolidated(chr17): Output hal fasta file string : /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/Anc0.c2h.fa
cactus_consolidated(chr17): Output reference fasta file string : /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/Anc0.ref
Malformed log message from 10.50.3.20
cactus_consolidated(chr17): Alignments file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/Anc0_primary.paf
cactus_consolidated(chr17): Secondary alignments file: (null)
cactus_consolidated(chr17): Constraint alignments file: (null)
cactus_consolidated(chr17): Species tree: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr17): Outgroup events:
cactus_consolidated(chr17): Reference event: Anc0
cactus_consolidated(chr17): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chr17): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chr17): Constructed the first flower
cactus_consolidated(chr17): Going to build the event tree with newick string: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr17): Parsed the tree
cactus_consolidated(chr17): Constructed the basic event tree
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/GRCh38.fa to GRCh38
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/GRCh38.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/GRCh38.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01109.2.fa to HG01109.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01109.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03579.1.fa to HG03579.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03579.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03579.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00438.1.fa to HG00438.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00438.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00438.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00733.1.fa to HG00733.1
Issued job 'export_vg' kind-export_vg/instance-n4mlf1p1 v1 with job batch system ID: 2707 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00733.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00733.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): A melting round is destroying 136186 blocks with an average degree of 91.287497 from chains with length less than 32. Total aligned bases lost: 59674338
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00438.2.fa to HG00438.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00438.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01123.1.fa to HG01123.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01123.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01123.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03579.2.fa to HG03579.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03579.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG03579.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00733.2.fa to HG00733.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00733.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00733.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00621.1.fa to HG00621.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00621.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00621.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01123.2.fa to HG01123.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01123.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01123.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00621.2.fa to HG00621.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00621.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00621.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/NA18906.1.fa to NA18906.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/NA18906.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/NA18906.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00735.1.fa to HG00735.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00735.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00735.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00673.1.fa to HG00673.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00673.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00673.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01175.1.fa to HG01175.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01175.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01175.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/NA18906.2.fa to NA18906.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/NA18906.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/NA18906.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00673.2.fa to HG00673.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00673.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00673.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00735.2.fa to HG00735.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00735.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00735.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00733.1.fa to HG00733.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00733.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00733.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01175.2.fa to HG01175.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01175.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01175.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/NA20129.1.fa to NA20129.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/NA20129.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/NA20129.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00741.1.fa to HG00741.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00741.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00741.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00733.2.fa to HG00733.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00733.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00733.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01243.1.fa to HG01243.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01243.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01243.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00735.1.fa to HG00735.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00735.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00735.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/NA20129.2.fa to NA20129.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/NA20129.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/NA20129.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00741.2.fa to HG00741.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00741.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00741.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00735.2.fa to HG00735.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00735.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00735.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01243.2.fa to HG01243.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01243.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01243.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/NA21309.1.fa to NA21309.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/NA21309.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/NA21309.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00741.1.fa to HG00741.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00741.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00741.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01071.1.fa to HG01071.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01071.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01071.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Starting melting round with a minimum chain length of 512
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01258.1.fa to HG01258.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01258.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01258.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00741.2.fa to HG00741.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00741.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00741.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/NA21309.2.fa to NA21309.2
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/NA21309.2.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/NA21309.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01071.2.fa to HG01071.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01071.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01071.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01071.1.fa to HG01071.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01071.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01071.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01258.2.fa to HG01258.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01258.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01258.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/CHM13.fa to CHM13
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/CHM13.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/CHM13.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01071.2.fa to HG01071.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01071.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01071.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01106.1.fa to HG01106.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01106.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01106.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01106.1.fa to HG01106.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01106.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01106.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01358.1.fa to HG01358.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01358.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01358.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02080.1.fa to HG02080.1
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02080.1.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG02080.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01106.2.fa to HG01106.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01106.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01106.2.fa to HG01106.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01106.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01109.1.fa to HG01109.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01109.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01358.2.fa to HG01358.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01358.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01358.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Assigning sequence /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/_MINIGRAPH_.fa to _MINIGRAPH_
cactus_consolidated(chr10): Processing file: /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/_MINIGRAPH_.fa
cactus_consolidated(chr10): The file /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01109.1.fa to HG01109.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01109.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01109.2.fa to HG01109.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01109.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01361.1.fa to HG01361.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01361.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01361.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Constructed the initial flower with 19245 sequences and 93 events with string: ((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chr10): Established the first Flower in the hierarchy, 90 seconds have elapsed
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01123.1.fa to HG01123.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01123.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01123.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01109.2.fa to HG01109.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01109.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01123.2.fa to HG01123.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01123.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01123.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01361.2.fa to HG01361.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01361.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01361.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01123.1.fa to HG01123.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01123.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01123.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01175.1.fa to HG01175.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01175.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01175.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01175.2.fa to HG01175.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01175.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01175.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01891.1.fa to HG01891.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01891.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01891.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01123.2.fa to HG01123.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01123.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01123.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01243.1.fa to HG01243.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01243.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01243.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01891.2.fa to HG01891.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01891.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01891.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01243.2.fa to HG01243.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01243.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01243.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01175.1.fa to HG01175.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01175.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01175.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): A melting round is destroying 193248 blocks with an average degree of 66.617026 from chains with length less than 32. Total aligned bases lost: 65014762
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01258.1.fa to HG01258.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01258.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01258.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01928.1.fa to HG01928.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01928.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01928.1.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:49:51.185947: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/GRCh38.fa HG00438.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00438.1.fa HG00438.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00438.2.fa HG00621.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00621.1.fa HG00621.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00621.2.fa HG00673.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00673.1.fa HG00673.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00673.2.fa HG00733.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00733.1.fa HG00733.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00733.2.fa HG00735.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00735.1.fa HG00735.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00735.2.fa HG00741.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00741.1.fa HG00741.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00741.2.fa HG01071.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01071.1.fa HG01071.2 /da <...> ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/Anc0.c2h.fa --outputReferenceFile /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chr9): Params file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/Anc0.config.xml
cactus_consolidated(chr9): Output file string : /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/Anc0.c2h
cactus_consolidated(chr9): Output hal fasta file string : /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/Anc0.c2h.fa
cactus_consolidated(chr9): Output reference fasta file string : /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/Anc0.ref
Malformed log message from 10.50.3.12
cactus_consolidated(chr9): Alignments file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/Anc0_primary.paf
cactus_consolidated(chr9): Secondary alignments file: (null)
cactus_consolidated(chr9): Constraint alignments file: (null)
cactus_consolidated(chr9): Species tree: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr9): Outgroup events:
cactus_consolidated(chr9): Reference event: Anc0
cactus_consolidated(chr9): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chr9): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chr9): Constructed the first flower
cactus_consolidated(chr9): Going to build the event tree with newick string: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr9): Parsed the tree
cactus_consolidated(chr9): Constructed the basic event tree
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/GRCh38.fa to GRCh38
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/GRCh38.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/GRCh38.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01175.2.fa to HG01175.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01175.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01175.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01258.2.fa to HG01258.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01258.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01258.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): A melting round is destroying 7285 blocks with an average degree of 67.960055 from chains with length less than 512. Total aligned bases lost: 13724298
cactus_consolidated(chr19): A melting round is destroying 119287 blocks with an average degree of 66.179542 from chains with length less than 2. Total aligned bases lost: 7894359
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01358.1.fa to HG01358.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01358.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01358.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01928.2.fa to HG01928.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01928.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01928.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00438.1.fa to HG00438.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00438.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00438.1.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:49:52.264056: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/GRCh38.fa HG00438.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00438.1.fa HG00438.2 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00438.2.fa HG00621.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00621.1.fa HG00621.2 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00621.2.fa HG00673.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00673.1.fa HG00673.2 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00673.2.fa HG00733.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00733.1.fa HG00733.2 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00733.2.fa HG00735.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00735.1.fa HG00735.2 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00735.2.fa HG00741.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00741.1.fa HG00741.2 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00741.2.fa HG01071.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01071.1.fa HG01071.2 /da <...> a1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/Anc0.c2h.fa --outputReferenceFile /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chr14): Params file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/Anc0.config.xml
cactus_consolidated(chr14): Output file string : /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/Anc0.c2h
cactus_consolidated(chr14): Output hal fasta file string : /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/Anc0.c2h.fa
cactus_consolidated(chr14): Output reference fasta file string : /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/Anc0.ref
Malformed log message from 10.50.3.20
cactus_consolidated(chr14): Alignments file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/Anc0_primary.paf
cactus_consolidated(chr14): Secondary alignments file: (null)
cactus_consolidated(chr14): Constraint alignments file: (null)
cactus_consolidated(chr14): Species tree: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr14): Outgroup events:
cactus_consolidated(chr14): Reference event: Anc0
cactus_consolidated(chr14): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chr14): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chr14): Constructed the first flower
cactus_consolidated(chr14): Going to build the event tree with newick string: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr14): Parsed the tree
cactus_consolidated(chr14): Constructed the basic event tree
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/GRCh38.fa to GRCh38
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/GRCh38.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/GRCh38.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Converted alignment coordinates, 95 seconds have elapsed
cactus_consolidated(chr10): Stripped any unique IDs, 95 seconds have elapsed
cactus_consolidated(chr10): We found a max path distance between ingroups in the tree (((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;) of 0.050000, giving us and min final chain length of: 2048
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01243.1.fa to HG01243.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01243.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01243.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Starting annealing round with a minimum chain length of 2048 and an alignment trim of 3
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01358.2.fa to HG01358.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01358.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01358.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00438.1.fa to HG00438.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00438.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00438.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01952.1.fa to HG01952.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01952.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01952.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00438.2.fa to HG00438.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00438.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01361.1.fa to HG01361.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01361.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01361.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01243.2.fa to HG01243.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01243.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01243.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00438.2.fa to HG00438.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00438.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01361.2.fa to HG01361.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01361.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01361.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00621.1.fa to HG00621.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00621.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00621.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01952.2.fa to HG01952.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01952.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01952.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01258.1.fa to HG01258.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01258.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01258.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01891.1.fa to HG01891.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01891.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01891.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00621.1.fa to HG00621.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00621.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00621.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01891.2.fa to HG01891.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01891.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01891.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00621.2.fa to HG00621.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00621.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00621.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01978.1.fa to HG01978.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01978.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01978.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00621.2.fa to HG00621.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00621.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00621.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01258.2.fa to HG01258.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01258.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01258.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01928.1.fa to HG01928.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01928.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01928.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00673.1.fa to HG00673.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00673.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00673.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01978.2.fa to HG01978.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01978.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG01978.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00673.1.fa to HG00673.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00673.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00673.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01928.2.fa to HG01928.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01928.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01928.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01358.1.fa to HG01358.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01358.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01358.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00673.2.fa to HG00673.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00673.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00673.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01952.1.fa to HG01952.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01952.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01952.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02055.1.fa to HG02055.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02055.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02055.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00733.1.fa to HG00733.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00733.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00733.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00673.2.fa to HG00673.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00673.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00673.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01358.2.fa to HG01358.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01358.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01358.2.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:49:57.328884: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/GRCh38.fa HG00438.1 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00438.1.fa HG00438.2 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00438.2.fa HG00621.1 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00621.1.fa HG00621.2 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00621.2.fa HG00673.1 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00673.1.fa HG00673.2 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00673.2.fa HG00733.1 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00733.1.fa HG00733.2 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00733.2.fa HG00735.1 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00735.1.fa HG00735.2 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00735.2.fa HG00741.1 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00741.1.fa HG00741.2 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00741.2.fa HG01071.1 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01071.1.fa HG01071.2 /da <...> b143ddcde269dd7b/2d61/27a4/tmp5refwp9z/Anc0.c2h.fa --outputReferenceFile /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chr6): Params file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/Anc0.config.xml
cactus_consolidated(chr6): Output file string : /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/Anc0.c2h
cactus_consolidated(chr6): Output hal fasta file string : /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/Anc0.c2h.fa
cactus_consolidated(chr6): Output reference fasta file string : /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/Anc0.ref
Malformed log message from 10.50.3.19
cactus_consolidated(chr6): Alignments file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/Anc0_primary.paf
cactus_consolidated(chr6): Secondary alignments file: (null)
cactus_consolidated(chr6): Constraint alignments file: (null)
cactus_consolidated(chr6): Species tree: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr6): Outgroup events:
cactus_consolidated(chr6): Reference event: Anc0
cactus_consolidated(chr6): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chr6): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chr6): Constructed the first flower
cactus_consolidated(chr6): Going to build the event tree with newick string: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr6): Parsed the tree
cactus_consolidated(chr6): Constructed the basic event tree
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/GRCh38.fa to GRCh38
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/GRCh38.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/GRCh38.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01952.2.fa to HG01952.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01952.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01952.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Starting melting round with a minimum chain length of 512
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00733.2.fa to HG00733.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00733.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00733.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01978.1.fa to HG01978.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01978.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01978.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02055.2.fa to HG02055.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02055.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02055.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00733.1.fa to HG00733.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00733.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00733.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01361.1.fa to HG01361.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01361.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01361.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00735.1.fa to HG00735.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00735.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00735.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01978.2.fa to HG01978.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01978.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG01978.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00438.1.fa to HG00438.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00438.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00438.1.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:49:58.697589: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/GRCh38.fa HG00438.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00438.1.fa HG00438.2 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00438.2.fa HG00621.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00621.1.fa HG00621.2 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00621.2.fa HG00673.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00673.1.fa HG00673.2 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00673.2.fa HG00733.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00733.1.fa HG00733.2 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00733.2.fa HG00735.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00735.1.fa HG00735.2 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00735.2.fa HG00741.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00741.1.fa HG00741.2 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00741.2.fa HG01071.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01071.1.fa HG01071.2 /da <...> a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/Anc0.c2h.fa --outputReferenceFile /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chr16): Params file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/Anc0.config.xml
cactus_consolidated(chr16): Output file string : /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/Anc0.c2h
cactus_consolidated(chr16): Output hal fasta file string : /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/Anc0.c2h.fa
cactus_consolidated(chr16): Output reference fasta file string : /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/Anc0.ref
Malformed log message from 10.50.3.17
cactus_consolidated(chr16): Alignments file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/Anc0_primary.paf
cactus_consolidated(chr16): Secondary alignments file: (null)
cactus_consolidated(chr16): Constraint alignments file: (null)
cactus_consolidated(chr16): Species tree: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr16): Outgroup events:
cactus_consolidated(chr16): Reference event: Anc0
cactus_consolidated(chr16): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chr16): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chr16): Constructed the first flower
cactus_consolidated(chr16): Going to build the event tree with newick string: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr16): Parsed the tree
cactus_consolidated(chr16): Constructed the basic event tree
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/GRCh38.fa to GRCh38
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/GRCh38.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/GRCh38.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02080.2.fa to HG02080.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02080.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02080.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00733.2.fa to HG00733.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00733.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00733.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00735.2.fa to HG00735.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00735.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00735.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02055.1.fa to HG02055.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02055.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02055.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01361.2.fa to HG01361.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01361.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01361.2.fa is specified incomplete, the sequences will not be attached
Issued job 'export_vg' kind-export_vg/instance-10ri_n5a v1 with job batch system ID: 2708 and disk: 445.2 Mi, memory: 8.7 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00438.1.fa to HG00438.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00438.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00438.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02055.2.fa to HG02055.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02055.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02055.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00741.1.fa to HG00741.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00741.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00741.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Starting melting round with a minimum chain length of 32
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00438.2.fa to HG00438.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00438.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00735.1.fa to HG00735.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00735.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00735.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00438.2.fa to HG00438.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00438.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02109.1.fa to HG02109.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02109.1.fa
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01891.1.fa to HG01891.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01891.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01891.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02080.2.fa to HG02080.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02080.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02080.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Destroying 1743 recoverable blocks
cactus_consolidated(chr22): The blocks covered 315156 columns for a total of 24079579 aligned bases
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00741.2.fa to HG00741.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00741.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00741.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00621.1.fa to HG00621.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00621.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00621.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00735.2.fa to HG00735.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00735.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00735.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02109.1.fa to HG02109.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02109.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02109.2.fa to HG02109.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02109.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00621.1.fa to HG00621.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00621.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00621.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01891.2.fa to HG01891.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01891.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01891.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00621.2.fa to HG00621.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00621.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00621.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01071.1.fa to HG01071.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01071.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01071.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02109.2.fa to HG02109.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02109.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00741.1.fa to HG00741.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00741.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00741.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00673.1.fa to HG00673.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00673.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00673.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01071.2.fa to HG01071.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01071.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01071.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02145.1.fa to HG02145.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02145.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02145.1.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:50:01.977105: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/GRCh38.fa HG00438.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00438.1.fa HG00438.2 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00438.2.fa HG00621.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00621.1.fa HG00621.2 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00621.2.fa HG00673.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00673.1.fa HG00673.2 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00673.2.fa HG00733.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00733.1.fa HG00733.2 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00733.2.fa HG00735.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00735.1.fa HG00735.2 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00735.2.fa HG00741.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00741.1.fa HG00741.2 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00741.2.fa HG01071.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01071.1.fa HG01071.2 /da <...> 8e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/Anc0.c2h.fa --outputReferenceFile /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chr13): Params file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/Anc0.config.xml
cactus_consolidated(chr13): Output file string : /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/Anc0.c2h
cactus_consolidated(chr13): Output hal fasta file string : /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/Anc0.c2h.fa
cactus_consolidated(chr13): Output reference fasta file string : /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/Anc0.ref
Malformed log message from 10.50.3.18
cactus_consolidated(chr13): Alignments file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/Anc0_primary.paf
cactus_consolidated(chr13): Secondary alignments file: (null)
cactus_consolidated(chr13): Constraint alignments file: (null)
cactus_consolidated(chr13): Species tree: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr13): Outgroup events:
cactus_consolidated(chr13): Reference event: Anc0
cactus_consolidated(chr13): Loaded the parameters files, 1 seconds have elapsed
cactus_consolidated(chr13): Set up the cactus disk, 1 seconds have elapsed
cactus_consolidated(chr13): Constructed the first flower
cactus_consolidated(chr13): Going to build the event tree with newick string: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr13): Parsed the tree
cactus_consolidated(chr13): Constructed the basic event tree
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/GRCh38.fa to GRCh38
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/GRCh38.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/GRCh38.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02145.1.fa to HG02145.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02145.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02145.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01928.1.fa to HG01928.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01928.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01928.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00621.2.fa to HG00621.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00621.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00621.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00673.2.fa to HG00673.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00673.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00673.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01106.1.fa to HG01106.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01106.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01106.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00741.2.fa to HG00741.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00741.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00741.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02145.2.fa to HG02145.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02145.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02145.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00438.1.fa to HG00438.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00438.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00438.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02145.2.fa to HG02145.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02145.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02145.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00733.1.fa to HG00733.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00733.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00733.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01928.2.fa to HG01928.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01928.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01928.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02148.1.fa to HG02148.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02148.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02148.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01106.2.fa to HG01106.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01106.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01071.1.fa to HG01071.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01071.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01071.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00438.2.fa to HG00438.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00438.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00673.1.fa to HG00673.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00673.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00673.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00733.2.fa to HG00733.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00733.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00733.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02148.2.fa to HG02148.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02148.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02148.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02148.1.fa to HG02148.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02148.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02148.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01109.1.fa to HG01109.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01109.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01952.1.fa to HG01952.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01952.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01952.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00621.1.fa to HG00621.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00621.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00621.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00735.1.fa to HG00735.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00735.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00735.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02257.1.fa to HG02257.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02257.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02257.1.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:50:04.494822: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/GRCh38.fa HG00438.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00438.1.fa HG00438.2 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00438.2.fa HG00621.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00621.1.fa HG00621.2 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00621.2.fa HG00673.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00673.1.fa HG00673.2 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00673.2.fa HG00733.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00733.1.fa HG00733.2 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00733.2.fa HG00735.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00735.1.fa HG00735.2 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00735.2.fa HG00741.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00741.1.fa HG00741.2 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00741.2.fa HG01071.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01071.1.fa HG01071.2 /da <...> 8d9c685404953bb7/186a/27ea/tmpumizd8h5/Anc0.c2h.fa --outputReferenceFile /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chr18): Params file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/Anc0.config.xml
cactus_consolidated(chr18): Output file string : /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/Anc0.c2h
cactus_consolidated(chr18): Output hal fasta file string : /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/Anc0.c2h.fa
cactus_consolidated(chr18): Output reference fasta file string : /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/Anc0.ref
Malformed log message from 10.50.3.13
cactus_consolidated(chr18): Alignments file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/Anc0_primary.paf
cactus_consolidated(chr18): Secondary alignments file: (null)
cactus_consolidated(chr18): Constraint alignments file: (null)
cactus_consolidated(chr18): Species tree: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr18): Outgroup events:
cactus_consolidated(chr18): Reference event: Anc0
cactus_consolidated(chr18): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chr18): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chr18): Constructed the first flower
cactus_consolidated(chr18): Going to build the event tree with newick string: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr18): Parsed the tree
cactus_consolidated(chr18): Constructed the basic event tree
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/GRCh38.fa to GRCh38
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/GRCh38.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/GRCh38.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:50:04.542443: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/GRCh38.fa HG00438.1 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00438.1.fa HG00438.2 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00438.2.fa HG00621.1 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00621.1.fa HG00621.2 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00621.2.fa HG00673.1 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00673.1.fa HG00673.2 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00673.2.fa HG00733.1 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00733.1.fa HG00733.2 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00733.2.fa HG00735.1 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00735.1.fa HG00735.2 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00735.2.fa HG00741.1 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00741.1.fa HG00741.2 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00741.2.fa HG01071.1 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01071.1.fa HG01071.2 /da <...> 8515bad92da082de/f90a/01df/tmpmlxwbdws/Anc0.c2h.fa --outputReferenceFile /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chr4): Params file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/Anc0.config.xml
cactus_consolidated(chr4): Output file string : /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/Anc0.c2h
cactus_consolidated(chr4): Output hal fasta file string : /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/Anc0.c2h.fa
cactus_consolidated(chr4): Output reference fasta file string : /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/Anc0.ref
Malformed log message from 10.50.3.11
cactus_consolidated(chr4): Alignments file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/Anc0_primary.paf
cactus_consolidated(chr4): Secondary alignments file: (null)
cactus_consolidated(chr4): Constraint alignments file: (null)
cactus_consolidated(chr4): Species tree: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr4): Outgroup events:
cactus_consolidated(chr4): Reference event: Anc0
cactus_consolidated(chr4): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chr4): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chr4): Constructed the first flower
cactus_consolidated(chr4): Going to build the event tree with newick string: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr4): Parsed the tree
cactus_consolidated(chr4): Constructed the basic event tree
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/GRCh38.fa to GRCh38
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/GRCh38.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/GRCh38.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01071.2.fa to HG01071.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01071.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01071.2.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:50:04.594991: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/GRCh38.fa HG00438.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00438.1.fa HG00438.2 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00438.2.fa HG00621.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00621.1.fa HG00621.2 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00621.2.fa HG00673.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00673.1.fa HG00673.2 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00673.2.fa HG00733.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00733.1.fa HG00733.2 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00733.2.fa HG00735.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00735.1.fa HG00735.2 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00735.2.fa HG00741.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00741.1.fa HG00741.2 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00741.2.fa HG01071.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01071.1.fa HG01071.2 /da <...> bc09997943db6609/da2d/af11/tmpl7ges3ol/Anc0.c2h.fa --outputReferenceFile /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chr8): Params file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/Anc0.config.xml
cactus_consolidated(chr8): Output file string : /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/Anc0.c2h
cactus_consolidated(chr8): Output hal fasta file string : /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/Anc0.c2h.fa
cactus_consolidated(chr8): Output reference fasta file string : /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/Anc0.ref
Malformed log message from 10.50.3.16
cactus_consolidated(chr8): Alignments file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/Anc0_primary.paf
cactus_consolidated(chr8): Secondary alignments file: (null)
cactus_consolidated(chr8): Constraint alignments file: (null)
cactus_consolidated(chr8): Species tree: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr8): Outgroup events:
cactus_consolidated(chr8): Reference event: Anc0
cactus_consolidated(chr8): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chr8): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chr8): Constructed the first flower
cactus_consolidated(chr8): Going to build the event tree with newick string: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr8): Parsed the tree
cactus_consolidated(chr8): Constructed the basic event tree
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/GRCh38.fa to GRCh38
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/GRCh38.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/GRCh38.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01109.2.fa to HG01109.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01109.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00673.2.fa to HG00673.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00673.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00673.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02148.2.fa to HG02148.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02148.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02148.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00735.2.fa to HG00735.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00735.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00735.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02257.2.fa to HG02257.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02257.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02257.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00438.1.fa to HG00438.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00438.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00438.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00621.2.fa to HG00621.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00621.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00621.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01952.2.fa to HG01952.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01952.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01952.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01106.1.fa to HG01106.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01106.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01106.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01123.1.fa to HG01123.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01123.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01123.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00438.2.fa to HG00438.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00438.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02486.1.fa to HG02486.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02486.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00438.1.fa to HG00438.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00438.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00438.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00741.1.fa to HG00741.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00741.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00741.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00673.1.fa to HG00673.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00673.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00673.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00438.1.fa to HG00438.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00438.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00438.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02257.1.fa to HG02257.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02257.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02257.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01123.2.fa to HG01123.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01123.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01123.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00733.1.fa to HG00733.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00733.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00733.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01978.1.fa to HG01978.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01978.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01978.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00621.1.fa to HG00621.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00621.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00621.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02486.2.fa to HG02486.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02486.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00741.2.fa to HG00741.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00741.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00741.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01106.2.fa to HG01106.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01106.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00673.2.fa to HG00673.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00673.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00673.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00621.2.fa to HG00621.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00621.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00621.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00438.2.fa to HG00438.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00438.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01175.1.fa to HG01175.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01175.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01175.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02559.1.fa to HG02559.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02559.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02559.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02257.2.fa to HG02257.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02257.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02257.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01071.1.fa to HG01071.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01071.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01071.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01978.2.fa to HG01978.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01978.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG01978.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00438.2.fa to HG00438.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00438.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00733.1.fa to HG00733.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00733.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00733.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00673.1.fa to HG00673.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00673.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00673.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00733.2.fa to HG00733.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00733.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00733.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01109.1.fa to HG01109.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01109.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02559.2.fa to HG02559.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02559.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02559.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01175.2.fa to HG01175.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01175.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01175.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01071.2.fa to HG01071.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01071.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01071.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00621.1.fa to HG00621.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00621.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00621.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02486.1.fa to HG02486.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02486.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00673.2.fa to HG00673.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00673.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00673.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00733.2.fa to HG00733.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00733.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00733.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02572.1.fa to HG02572.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02572.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02572.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02055.1.fa to HG02055.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02055.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02055.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01243.1.fa to HG01243.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01243.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01243.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01106.1.fa to HG01106.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01106.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01106.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01109.2.fa to HG01109.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01109.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00733.1.fa to HG00733.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00733.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00733.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): A melting round is destroying 12902 blocks with an average degree of 33.452100 from chains with length less than 512. Total aligned bases lost: 19467881
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00621.1.fa to HG00621.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00621.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00621.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02572.2.fa to HG02572.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02572.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02572.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00735.1.fa to HG00735.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00735.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00735.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00735.1.fa to HG00735.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00735.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00735.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): A melting round is destroying 2784 blocks with an average degree of 146.415589 from chains with length less than 2048. Total aligned bases lost: 13910953
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01243.2.fa to HG01243.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01243.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01243.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02486.2.fa to HG02486.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02486.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00621.2.fa to HG00621.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00621.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00621.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01106.2.fa to HG01106.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01106.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00733.2.fa to HG00733.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00733.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00733.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02055.2.fa to HG02055.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02055.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02055.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02622.1.fa to HG02622.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02622.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02622.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01123.1.fa to HG01123.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01123.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01123.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00735.2.fa to HG00735.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00735.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00735.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01258.1.fa to HG01258.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01258.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01258.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00735.1.fa to HG00735.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00735.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00735.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01109.1.fa to HG01109.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01109.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02622.2.fa to HG02622.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02622.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02622.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02559.1.fa to HG02559.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02559.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02559.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00735.2.fa to HG00735.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00735.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00735.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00621.2.fa to HG00621.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00621.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00621.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00673.1.fa to HG00673.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00673.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00673.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00741.1.fa to HG00741.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00741.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00741.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02080.2.fa to HG02080.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02080.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02080.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00735.2.fa to HG00735.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00735.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00735.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01123.2.fa to HG01123.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01123.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01123.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01258.2.fa to HG01258.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01258.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01258.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01109.2.fa to HG01109.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01109.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02630.1.fa to HG02630.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02630.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02630.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00741.1.fa to HG00741.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00741.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00741.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00741.2.fa to HG00741.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00741.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00741.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01123.1.fa to HG01123.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01123.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01123.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02559.2.fa to HG02559.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02559.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02559.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01358.1.fa to HG01358.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01358.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01358.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02630.2.fa to HG02630.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02630.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02630.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00673.2.fa to HG00673.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00673.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00673.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02109.1.fa to HG02109.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02109.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01175.1.fa to HG01175.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01175.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01175.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00741.1.fa to HG00741.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00741.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00741.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00741.2.fa to HG00741.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00741.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00741.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00673.1.fa to HG00673.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00673.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00673.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Destroying 0 recoverable blocks
cactus_consolidated(chr22): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01123.2.fa to HG01123.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01123.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01123.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Sequence graph statistics after melting:
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01071.1.fa to HG01071.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01071.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01071.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02717.1.fa to HG02717.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02717.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02717.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01358.2.fa to HG01358.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01358.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01358.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01071.1.fa to HG01071.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01071.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01071.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02572.1.fa to HG02572.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02572.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02572.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02109.2.fa to HG02109.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02109.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01175.1.fa to HG01175.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01175.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01175.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00733.1.fa to HG00733.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00733.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00733.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01175.2.fa to HG01175.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01175.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01175.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02717.2.fa to HG02717.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02717.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02717.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01071.2.fa to HG01071.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01071.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01071.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01361.1.fa to HG01361.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01361.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01361.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01071.2.fa to HG01071.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01071.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01071.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00741.2.fa to HG00741.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00741.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00741.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01175.2.fa to HG01175.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01175.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01175.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00673.2.fa to HG00673.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00673.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00673.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02723.1.fa to HG02723.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02723.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02723.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02572.2.fa to HG02572.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02572.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02572.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02145.1.fa to HG02145.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02145.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02145.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01106.1.fa to HG01106.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01106.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01106.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01106.1.fa to HG01106.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01106.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01106.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01361.2.fa to HG01361.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01361.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01361.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00733.2.fa to HG00733.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00733.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00733.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01243.1.fa to HG01243.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01243.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01243.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01243.1.fa to HG01243.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01243.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01243.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02723.2.fa to HG02723.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02723.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02723.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01106.2.fa to HG01106.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01106.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01071.1.fa to HG01071.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01071.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01071.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01106.2.fa to HG01106.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01106.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01891.1.fa to HG01891.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01891.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01891.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02622.1.fa to HG02622.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02622.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02622.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02145.2.fa to HG02145.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02145.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02145.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01243.2.fa to HG01243.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01243.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01243.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02818.1.fa to HG02818.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02818.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02818.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00733.1.fa to HG00733.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00733.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00733.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01109.1.fa to HG01109.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01109.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01243.2.fa to HG01243.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01243.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01243.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00735.1.fa to HG00735.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00735.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00735.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01109.1.fa to HG01109.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01109.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01891.2.fa to HG01891.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01891.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01891.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01258.1.fa to HG01258.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01258.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01258.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02818.2.fa to HG02818.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02818.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02818.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01109.2.fa to HG01109.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01109.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02622.2.fa to HG02622.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02622.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02622.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02148.1.fa to HG02148.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02148.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02148.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01071.2.fa to HG01071.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01071.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01071.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01109.2.fa to HG01109.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01109.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02886.1.fa to HG02886.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02886.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02886.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01928.1.fa to HG01928.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01928.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01928.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01258.1.fa to HG01258.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01258.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01258.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01123.1.fa to HG01123.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01123.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01123.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01258.2.fa to HG01258.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01258.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01258.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00735.2.fa to HG00735.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00735.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00735.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00733.2.fa to HG00733.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00733.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00733.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): There were 66289 blocks in the sequence graph, representing 3087037595 total aligned bases
cactus_consolidated(chr22): Block degree stats: min 1, avg 64.205690, median 91, max 102
cactus_consolidated(chr22): Block support stats: min 0.000000, avg 0.013056, median 0.010989, max 0.500000
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01123.2.fa to HG01123.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01123.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01123.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02886.2.fa to HG02886.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02886.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02886.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02630.1.fa to HG02630.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02630.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02630.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01358.1.fa to HG01358.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01358.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01358.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02148.2.fa to HG02148.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02148.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02148.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01123.1.fa to HG01123.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01123.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01123.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01928.2.fa to HG01928.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01928.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01928.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01258.2.fa to HG01258.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01258.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01258.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01106.1.fa to HG01106.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01106.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01106.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01175.1.fa to HG01175.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01175.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01175.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03098.1.fa to HG03098.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03098.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03098.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00741.1.fa to HG00741.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00741.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00741.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01358.2.fa to HG01358.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01358.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01358.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01123.2.fa to HG01123.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01123.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01123.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01952.1.fa to HG01952.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01952.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01952.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02630.2.fa to HG02630.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02630.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02630.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02257.1.fa to HG02257.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02257.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02257.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01175.2.fa to HG01175.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01175.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01175.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00735.1.fa to HG00735.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00735.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00735.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03098.2.fa to HG03098.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03098.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03098.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01358.1.fa to HG01358.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01358.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01358.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01361.1.fa to HG01361.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01361.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01361.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01175.1.fa to HG01175.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01175.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01175.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01952.2.fa to HG01952.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01952.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01952.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01243.1.fa to HG01243.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01243.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01243.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01106.2.fa to HG01106.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01106.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00741.2.fa to HG00741.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00741.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00741.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03453.1.fa to HG03453.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03453.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03453.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02717.1.fa to HG02717.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02717.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02717.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01361.2.fa to HG01361.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01361.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01361.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02257.2.fa to HG02257.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02257.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02257.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01175.2.fa to HG01175.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01175.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01175.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01243.2.fa to HG01243.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01243.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01243.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01358.2.fa to HG01358.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01358.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01358.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01978.1.fa to HG01978.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01978.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01978.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03453.2.fa to HG03453.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03453.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03453.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00735.2.fa to HG00735.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00735.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00735.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01891.1.fa to HG01891.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01891.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01891.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01258.1.fa to HG01258.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01258.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01258.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01071.1.fa to HG01071.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01071.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01071.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01243.1.fa to HG01243.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01243.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01243.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03486.1.fa to HG03486.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03486.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02717.2.fa to HG02717.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02717.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02717.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01109.1.fa to HG01109.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01109.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01978.2.fa to HG01978.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01978.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG01978.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02486.1.fa to HG02486.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02486.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01891.2.fa to HG01891.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01891.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01891.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01361.1.fa to HG01361.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01361.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01361.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01258.2.fa to HG01258.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01258.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01258.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03486.2.fa to HG03486.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03486.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01243.2.fa to HG01243.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01243.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01243.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02055.1.fa to HG02055.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02055.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02055.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01928.1.fa to HG01928.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01928.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01928.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01071.2.fa to HG01071.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01071.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01071.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01358.1.fa to HG01358.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01358.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01358.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02723.1.fa to HG02723.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02723.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02723.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00741.1.fa to HG00741.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00741.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00741.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02486.2.fa to HG02486.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02486.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03492.1.fa to HG03492.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03492.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03492.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01361.2.fa to HG01361.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01361.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01361.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): A melting round is destroying 245917 blocks with an average degree of 69.085915 from chains with length less than 32. Total aligned bases lost: 85956673
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01109.2.fa to HG01109.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01109.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01258.1.fa to HG01258.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01258.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01258.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02055.2.fa to HG02055.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02055.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02055.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01928.2.fa to HG01928.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01928.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01928.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01358.2.fa to HG01358.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01358.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01358.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03492.2.fa to HG03492.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03492.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03492.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02723.2.fa to HG02723.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02723.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02723.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01106.1.fa to HG01106.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01106.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01106.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02080.2.fa to HG02080.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02080.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02080.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01361.1.fa to HG01361.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01361.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01361.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02559.1.fa to HG02559.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02559.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02559.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01258.2.fa to HG01258.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01258.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01258.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01952.1.fa to HG01952.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01952.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01952.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01891.1.fa to HG01891.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01891.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01891.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03516.1.fa to HG03516.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03516.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03516.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00741.2.fa to HG00741.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00741.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00741.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01123.1.fa to HG01123.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01123.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01123.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01361.2.fa to HG01361.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01361.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01361.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02109.1.fa to HG02109.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02109.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01358.1.fa to HG01358.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01358.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01358.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01952.2.fa to HG01952.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01952.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01952.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02818.1.fa to HG02818.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02818.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02818.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03516.2.fa to HG03516.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03516.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03516.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01106.2.fa to HG01106.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01106.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02559.2.fa to HG02559.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02559.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02559.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01891.1.fa to HG01891.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01891.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01891.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01891.2.fa to HG01891.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01891.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01891.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02109.2.fa to HG02109.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02109.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03540.1.fa to HG03540.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03540.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03540.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01978.1.fa to HG01978.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01978.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01978.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01358.2.fa to HG01358.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01358.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01358.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01123.2.fa to HG01123.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01123.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01123.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01891.2.fa to HG01891.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01891.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01891.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01071.1.fa to HG01071.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01071.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01071.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02818.2.fa to HG02818.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02818.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02818.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02145.1.fa to HG02145.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02145.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02145.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02572.1.fa to HG02572.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02572.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02572.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01109.1.fa to HG01109.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01109.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03540.2.fa to HG03540.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03540.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03540.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01978.2.fa to HG01978.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01978.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG01978.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01928.1.fa to HG01928.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01928.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01928.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01928.1.fa to HG01928.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01928.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01928.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01361.1.fa to HG01361.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01361.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01361.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Attaching the sequence to the cactus root 2693, header chr22 with length 51324926 and 33763014 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02145.2.fa to HG02145.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02145.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02145.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03579.1.fa to HG03579.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03579.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03579.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02886.1.fa to HG02886.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02886.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02886.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01928.2.fa to HG01928.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01928.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01928.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02055.1.fa to HG02055.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02055.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02055.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01175.1.fa to HG01175.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01175.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01175.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02572.2.fa to HG02572.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02572.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02572.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01361.2.fa to HG01361.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01361.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01361.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01928.2.fa to HG01928.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01928.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01928.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01109.2.fa to HG01109.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01109.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01071.2.fa to HG01071.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01071.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01071.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03579.2.fa to HG03579.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03579.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG03579.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02148.1.fa to HG02148.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02148.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02148.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01952.1.fa to HG01952.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01952.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01952.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02055.2.fa to HG02055.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02055.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02055.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02886.2.fa to HG02886.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02886.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02886.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01891.1.fa to HG01891.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01891.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01891.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/NA18906.1.fa to NA18906.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/NA18906.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/NA18906.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02622.1.fa to HG02622.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02622.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02622.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01952.2.fa to HG01952.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01952.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01952.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02148.2.fa to HG02148.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02148.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02148.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02080.2.fa to HG02080.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02080.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02080.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01952.1.fa to HG01952.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01952.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01952.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01175.2.fa to HG01175.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01175.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01175.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01123.1.fa to HG01123.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01123.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01123.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/NA18906.2.fa to NA18906.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/NA18906.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/NA18906.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01891.2.fa to HG01891.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01891.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01891.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01978.1.fa to HG01978.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01978.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01978.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02257.1.fa to HG02257.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02257.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02257.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01106.1.fa to HG01106.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01106.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01106.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03098.1.fa to HG03098.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03098.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03098.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02109.1.fa to HG02109.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02109.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02622.2.fa to HG02622.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02622.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02622.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/NA20129.1.fa to NA20129.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/NA20129.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/NA20129.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01952.2.fa to HG01952.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01952.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01952.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01978.2.fa to HG01978.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01978.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG01978.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01123.2.fa to HG01123.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01123.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01123.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01928.1.fa to HG01928.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01928.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01928.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02257.2.fa to HG02257.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02257.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02257.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01243.1.fa to HG01243.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01243.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01243.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02109.2.fa to HG02109.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02109.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03098.2.fa to HG03098.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03098.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03098.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/NA20129.2.fa to NA20129.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/NA20129.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/NA20129.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02055.1.fa to HG02055.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02055.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02055.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02630.1.fa to HG02630.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02630.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02630.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01928.2.fa to HG01928.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01928.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01928.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02145.1.fa to HG02145.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02145.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02145.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01106.2.fa to HG01106.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01106.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01978.1.fa to HG01978.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01978.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01978.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02486.1.fa to HG02486.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02486.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/NA21309.1.fa to NA21309.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/NA21309.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/NA21309.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02055.2.fa to HG02055.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02055.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02055.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01175.1.fa to HG01175.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01175.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01175.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03453.1.fa to HG03453.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03453.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03453.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01243.2.fa to HG01243.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01243.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01243.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02145.2.fa to HG02145.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02145.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02145.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02486.2.fa to HG02486.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02486.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01952.1.fa to HG01952.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01952.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01952.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02080.2.fa to HG02080.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02080.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02080.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/NA21309.2.fa to NA21309.2
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/NA21309.2.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/NA21309.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02630.2.fa to HG02630.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02630.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02630.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01978.2.fa to HG01978.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01978.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG01978.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02109.1.fa to HG02109.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02109.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01175.2.fa to HG01175.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01175.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01175.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02148.1.fa to HG02148.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02148.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02148.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01109.1.fa to HG01109.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01109.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/CHM13.fa to CHM13
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/CHM13.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/CHM13.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02559.1.fa to HG02559.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02559.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02559.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01952.2.fa to HG01952.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01952.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01952.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03453.2.fa to HG03453.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03453.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03453.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01258.1.fa to HG01258.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01258.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01258.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02717.1.fa to HG02717.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02717.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02717.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02109.2.fa to HG02109.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02109.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02148.2.fa to HG02148.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02148.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02148.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02080.1.fa to HG02080.1
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02080.1.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG02080.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02055.1.fa to HG02055.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02055.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02055.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02559.2.fa to HG02559.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02559.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02559.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01978.1.fa to HG01978.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01978.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01978.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Starting melting round with a minimum chain length of 512
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01243.1.fa to HG01243.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01243.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01243.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02145.1.fa to HG02145.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02145.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02145.1.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:50:29.384670: Running the command: "hal2vg /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/efe8/f6cc/tmp5xlw3e3f/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03486.1.fa to HG03486.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03486.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02257.1.fa to HG02257.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02257.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02257.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/_MINIGRAPH_.fa to _MINIGRAPH_
cactus_consolidated(chr17): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/_MINIGRAPH_.fa
cactus_consolidated(chr17): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01109.2.fa to HG01109.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01109.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02572.1.fa to HG02572.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02572.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02572.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02717.2.fa to HG02717.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02717.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02717.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02055.2.fa to HG02055.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02055.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02055.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02145.2.fa to HG02145.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02145.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02145.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01978.2.fa to HG01978.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01978.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG01978.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01258.2.fa to HG01258.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01258.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01258.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02257.2.fa to HG02257.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02257.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02257.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Constructed the initial flower with 14174 sequences and 93 events with string: ((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chr17): Established the first Flower in the hierarchy, 55 seconds have elapsed
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01243.2.fa to HG01243.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01243.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01243.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03486.2.fa to HG03486.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03486.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02572.2.fa to HG02572.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02572.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02572.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02148.1.fa to HG02148.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02148.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02148.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02055.1.fa to HG02055.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02055.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02055.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02723.1.fa to HG02723.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02723.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02723.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02486.1.fa to HG02486.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02486.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02080.2.fa to HG02080.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02080.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02080.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02148.2.fa to HG02148.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02148.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02148.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02622.1.fa to HG02622.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02622.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02622.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01123.1.fa to HG01123.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01123.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01123.1.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:50:31.234355: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/GRCh38.fa HG00438.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00438.1.fa HG00438.2 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00438.2.fa HG00621.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00621.1.fa HG00621.2 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00621.2.fa HG00673.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00673.1.fa HG00673.2 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00673.2.fa HG00733.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00733.1.fa HG00733.2 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00733.2.fa HG00735.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00735.1.fa HG00735.2 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00735.2.fa HG00741.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00741.1.fa HG00741.2 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00741.2.fa HG01071.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01071.1.fa HG01071.2 /da <...> 8e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/Anc0.c2h.fa --outputReferenceFile /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chr5): Params file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/Anc0.config.xml
cactus_consolidated(chr5): Output file string : /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/Anc0.c2h
cactus_consolidated(chr5): Output hal fasta file string : /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/Anc0.c2h.fa
cactus_consolidated(chr5): Output reference fasta file string : /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/Anc0.ref
Malformed log message from 10.50.3.18
cactus_consolidated(chr5): Alignments file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/Anc0_primary.paf
cactus_consolidated(chr5): Secondary alignments file: (null)
cactus_consolidated(chr5): Constraint alignments file: (null)
cactus_consolidated(chr5): Species tree: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr5): Outgroup events:
cactus_consolidated(chr5): Reference event: Anc0
cactus_consolidated(chr5): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chr5): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chr5): Constructed the first flower
cactus_consolidated(chr5): Going to build the event tree with newick string: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr5): Parsed the tree
cactus_consolidated(chr5): Constructed the basic event tree
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/GRCh38.fa to GRCh38
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/GRCh38.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/GRCh38.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01358.1.fa to HG01358.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01358.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01358.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03492.1.fa to HG03492.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03492.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03492.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01258.1.fa to HG01258.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01258.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01258.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02486.2.fa to HG02486.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02486.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02055.2.fa to HG02055.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02055.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02055.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02257.1.fa to HG02257.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02257.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02257.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02109.1.fa to HG02109.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02109.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02723.2.fa to HG02723.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02723.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02723.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02622.2.fa to HG02622.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02622.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02622.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02559.1.fa to HG02559.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02559.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02559.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02257.2.fa to HG02257.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02257.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02257.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02080.2.fa to HG02080.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02080.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02080.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03492.2.fa to HG03492.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03492.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03492.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01123.2.fa to HG01123.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01123.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01123.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01258.2.fa to HG01258.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01258.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01258.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00438.1.fa to HG00438.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00438.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00438.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01358.2.fa to HG01358.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01358.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01358.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02630.1.fa to HG02630.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02630.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02630.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02109.2.fa to HG02109.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02109.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02486.1.fa to HG02486.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02486.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02818.1.fa to HG02818.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02818.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02818.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02559.2.fa to HG02559.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02559.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02559.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02109.1.fa to HG02109.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02109.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02630.2.fa to HG02630.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02630.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02630.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02486.2.fa to HG02486.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02486.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03516.1.fa to HG03516.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03516.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03516.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02572.1.fa to HG02572.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02572.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02572.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02145.1.fa to HG02145.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02145.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02145.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02109.2.fa to HG02109.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02109.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02818.2.fa to HG02818.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02818.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02818.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01358.1.fa to HG01358.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01358.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01358.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01361.1.fa to HG01361.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01361.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01361.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02559.1.fa to HG02559.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02559.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02559.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02717.1.fa to HG02717.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02717.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02717.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00438.2.fa to HG00438.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00438.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01175.1.fa to HG01175.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01175.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01175.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02572.2.fa to HG02572.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02572.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02572.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Converted alignment coordinates, 58 seconds have elapsed
cactus_consolidated(chr17): Stripped any unique IDs, 58 seconds have elapsed
cactus_consolidated(chr17): We found a max path distance between ingroups in the tree (((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;) of 0.050000, giving us and min final chain length of: 2048
cactus_consolidated(chr17): Starting annealing round with a minimum chain length of 2048 and an alignment trim of 3
cactus_consolidated(chr20): A melting round is destroying 5148 blocks with an average degree of 29.010101 from chains with length less than 2048. Total aligned bases lost: 20155754
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02145.1.fa to HG02145.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02145.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02145.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03516.2.fa to HG03516.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03516.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03516.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02559.2.fa to HG02559.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02559.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02559.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02145.2.fa to HG02145.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02145.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02145.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02717.2.fa to HG02717.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02717.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02717.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02886.1.fa to HG02886.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02886.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02886.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02622.1.fa to HG02622.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02622.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02622.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01358.2.fa to HG01358.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01358.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01358.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02572.1.fa to HG02572.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02572.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02572.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02145.2.fa to HG02145.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02145.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02145.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01361.2.fa to HG01361.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01361.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01361.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02723.1.fa to HG02723.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02723.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02723.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02622.2.fa to HG02622.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02622.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02622.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00621.1.fa to HG00621.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00621.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00621.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01175.2.fa to HG01175.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01175.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01175.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03540.1.fa to HG03540.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03540.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03540.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02148.1.fa to HG02148.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02148.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02148.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02572.2.fa to HG02572.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02572.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02572.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02886.2.fa to HG02886.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02886.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02886.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02148.1.fa to HG02148.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02148.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02148.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01361.1.fa to HG01361.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01361.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01361.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02630.1.fa to HG02630.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02630.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02630.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02723.2.fa to HG02723.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02723.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02723.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02622.1.fa to HG02622.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02622.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02622.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03540.2.fa to HG03540.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03540.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03540.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01891.1.fa to HG01891.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01891.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01891.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02148.2.fa to HG02148.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02148.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02148.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02630.2.fa to HG02630.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02630.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02630.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02818.1.fa to HG02818.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02818.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02818.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02148.2.fa to HG02148.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02148.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02148.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03098.1.fa to HG03098.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03098.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03098.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01243.1.fa to HG01243.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01243.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01243.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00621.2.fa to HG00621.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00621.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00621.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02622.2.fa to HG02622.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02622.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02622.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01361.2.fa to HG01361.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01361.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01361.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02257.1.fa to HG02257.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02257.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02257.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02717.1.fa to HG02717.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02717.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02717.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02818.2.fa to HG02818.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02818.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02818.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03579.1.fa to HG03579.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03579.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03579.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02630.1.fa to HG02630.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02630.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02630.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02257.1.fa to HG02257.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02257.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02257.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03098.2.fa to HG03098.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03098.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03098.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01891.2.fa to HG01891.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01891.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01891.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02717.2.fa to HG02717.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02717.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02717.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02886.1.fa to HG02886.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02886.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02886.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02630.2.fa to HG02630.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02630.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02630.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02257.2.fa to HG02257.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02257.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02257.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01891.1.fa to HG01891.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01891.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01891.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01243.2.fa to HG01243.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01243.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01243.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00673.1.fa to HG00673.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00673.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00673.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03579.2.fa to HG03579.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03579.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG03579.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02257.2.fa to HG02257.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02257.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02257.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02717.1.fa to HG02717.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02717.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02717.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02723.1.fa to HG02723.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02723.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02723.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02886.2.fa to HG02886.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02886.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02886.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03453.1.fa to HG03453.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03453.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03453.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02486.1.fa to HG02486.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02486.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01928.1.fa to HG01928.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01928.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01928.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02717.2.fa to HG02717.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02717.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02717.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01891.2.fa to HG01891.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01891.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01891.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02723.2.fa to HG02723.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02723.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02723.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03098.1.fa to HG03098.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03098.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03098.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/NA18906.1.fa to NA18906.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/NA18906.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/NA18906.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02486.1.fa to HG02486.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02486.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00673.2.fa to HG00673.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00673.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00673.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02486.2.fa to HG02486.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02486.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01258.1.fa to HG01258.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01258.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01258.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03453.2.fa to HG03453.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03453.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03453.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02723.1.fa to HG02723.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02723.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02723.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02818.1.fa to HG02818.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02818.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02818.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03098.2.fa to HG03098.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03098.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03098.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02559.1.fa to HG02559.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02559.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02559.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02723.2.fa to HG02723.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02723.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02723.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01928.2.fa to HG01928.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01928.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01928.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01928.1.fa to HG01928.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01928.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01928.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/NA18906.2.fa to NA18906.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/NA18906.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/NA18906.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02486.2.fa to HG02486.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02486.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02818.2.fa to HG02818.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02818.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02818.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03486.1.fa to HG03486.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03486.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03453.1.fa to HG03453.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03453.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03453.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02818.1.fa to HG02818.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02818.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02818.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00733.1.fa to HG00733.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00733.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00733.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01258.2.fa to HG01258.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01258.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01258.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02559.2.fa to HG02559.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02559.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02559.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02886.1.fa to HG02886.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02886.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02886.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01928.2.fa to HG01928.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01928.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01928.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02818.2.fa to HG02818.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02818.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02818.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03453.2.fa to HG03453.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03453.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03453.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/NA20129.1.fa to NA20129.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/NA20129.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/NA20129.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02559.1.fa to HG02559.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02559.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02559.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01952.1.fa to HG01952.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01952.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01952.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03486.2.fa to HG03486.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03486.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02572.1.fa to HG02572.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02572.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02572.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02886.2.fa to HG02886.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02886.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02886.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02886.1.fa to HG02886.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02886.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02886.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03486.1.fa to HG03486.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03486.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00733.2.fa to HG00733.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00733.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00733.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01358.1.fa to HG01358.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01358.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01358.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/NA20129.2.fa to NA20129.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/NA20129.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/NA20129.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02572.2.fa to HG02572.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02572.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02572.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01952.1.fa to HG01952.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01952.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01952.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02886.2.fa to HG02886.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02886.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02886.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03098.1.fa to HG03098.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03098.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03098.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02559.2.fa to HG02559.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02559.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02559.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03492.1.fa to HG03492.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03492.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03492.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03486.2.fa to HG03486.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03486.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01952.2.fa to HG01952.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01952.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01952.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03098.1.fa to HG03098.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03098.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03098.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02622.1.fa to HG02622.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02622.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02622.1.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:50:42.893507: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/GRCh38.fa HG00438.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00438.1.fa HG00438.2 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00438.2.fa HG00621.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00621.1.fa HG00621.2 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00621.2.fa HG00673.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00673.1.fa HG00673.2 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00673.2.fa HG00733.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00733.1.fa HG00733.2 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00733.2.fa HG00735.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00735.1.fa HG00735.2 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00735.2.fa HG00741.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00741.1.fa HG00741.2 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00741.2.fa HG01071.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01071.1.fa HG01071.2 /da <...> bc09997943db6609/b0a2/0fd1/tmpw725qvvk/Anc0.c2h.fa --outputReferenceFile /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chr3): Params file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/Anc0.config.xml
cactus_consolidated(chr3): Output file string : /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/Anc0.c2h
cactus_consolidated(chr3): Output hal fasta file string : /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/Anc0.c2h.fa
cactus_consolidated(chr3): Output reference fasta file string : /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/Anc0.ref
Malformed log message from 10.50.3.16
cactus_consolidated(chr3): Alignments file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/Anc0_primary.paf
cactus_consolidated(chr3): Secondary alignments file: (null)
cactus_consolidated(chr3): Constraint alignments file: (null)
cactus_consolidated(chr3): Species tree: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr3): Outgroup events:
cactus_consolidated(chr3): Reference event: Anc0
cactus_consolidated(chr3): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chr3): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chr3): Constructed the first flower
cactus_consolidated(chr3): Going to build the event tree with newick string: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr3): Parsed the tree
cactus_consolidated(chr3): Constructed the basic event tree
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/GRCh38.fa to GRCh38
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/GRCh38.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/GRCh38.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03098.2.fa to HG03098.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03098.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03098.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/NA21309.1.fa to NA21309.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/NA21309.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/NA21309.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03492.1.fa to HG03492.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03492.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03492.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01952.2.fa to HG01952.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01952.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01952.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03492.2.fa to HG03492.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03492.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03492.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03098.2.fa to HG03098.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03098.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03098.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02572.1.fa to HG02572.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02572.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02572.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00735.1.fa to HG00735.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00735.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00735.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01358.2.fa to HG01358.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01358.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01358.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02622.2.fa to HG02622.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02622.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02622.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03453.1.fa to HG03453.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03453.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03453.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03492.2.fa to HG03492.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03492.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03492.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01978.1.fa to HG01978.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01978.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01978.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03453.1.fa to HG03453.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03453.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03453.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): A melting round is destroying 11660 blocks with an average degree of 39.892196 from chains with length less than 512. Total aligned bases lost: 23026665
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/NA21309.2.fa to NA21309.2
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/NA21309.2.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/NA21309.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03453.2.fa to HG03453.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03453.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03453.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02630.1.fa to HG02630.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02630.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02630.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00438.1.fa to HG00438.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00438.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00438.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03516.1.fa to HG03516.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03516.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03516.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01978.1.fa to HG01978.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01978.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01978.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02572.2.fa to HG02572.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02572.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02572.2.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:50:44.387538: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/GRCh38.fa HG00438.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00438.1.fa HG00438.2 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00438.2.fa HG00621.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00621.1.fa HG00621.2 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00621.2.fa HG00673.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00673.1.fa HG00673.2 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00673.2.fa HG00733.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00733.1.fa HG00733.2 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00733.2.fa HG00735.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00735.1.fa HG00735.2 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00735.2.fa HG00741.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00741.1.fa HG00741.2 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00741.2.fa HG01071.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01071.1.fa HG01071.2 /da <...> a4aab14527c65d50/e236/d600/tmp2r60j6_2/Anc0.c2h.fa --outputReferenceFile /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chr15): Params file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/Anc0.config.xml
cactus_consolidated(chr15): Output file string : /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/Anc0.c2h
cactus_consolidated(chr15): Output hal fasta file string : /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/Anc0.c2h.fa
cactus_consolidated(chr15): Output reference fasta file string : /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/Anc0.ref
Malformed log message from 10.50.3.8
cactus_consolidated(chr15): Alignments file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/Anc0_primary.paf
cactus_consolidated(chr15): Secondary alignments file: (null)
cactus_consolidated(chr15): Constraint alignments file: (null)
cactus_consolidated(chr15): Species tree: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr15): Outgroup events:
cactus_consolidated(chr15): Reference event: Anc0
cactus_consolidated(chr15): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chr15): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chr15): Constructed the first flower
cactus_consolidated(chr15): Going to build the event tree with newick string: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr15): Parsed the tree
cactus_consolidated(chr15): Constructed the basic event tree
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/GRCh38.fa to GRCh38
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/GRCh38.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/GRCh38.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03453.2.fa to HG03453.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03453.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03453.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03516.1.fa to HG03516.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03516.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03516.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00735.2.fa to HG00735.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00735.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00735.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03486.1.fa to HG03486.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03486.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01361.1.fa to HG01361.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01361.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01361.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02630.2.fa to HG02630.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02630.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02630.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Sequence graph statistics after annealing:
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03486.1.fa to HG03486.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03486.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/CHM13.fa to CHM13
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/CHM13.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/CHM13.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Destroying 4474 recoverable blocks
cactus_consolidated(chr21): The blocks covered 242827 columns for a total of 26416165 aligned bases
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00438.1.fa to HG00438.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00438.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00438.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01978.2.fa to HG01978.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01978.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG01978.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03516.2.fa to HG03516.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03516.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03516.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02622.1.fa to HG02622.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02622.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02622.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03516.2.fa to HG03516.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03516.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03516.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01978.2.fa to HG01978.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01978.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG01978.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03486.2.fa to HG03486.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03486.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03486.2.fa to HG03486.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03486.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02717.1.fa to HG02717.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02717.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02717.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00438.2.fa to HG00438.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00438.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00438.2.fa to HG00438.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00438.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03540.1.fa to HG03540.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03540.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03540.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02080.1.fa to HG02080.1
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02080.1.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG02080.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03492.1.fa to HG03492.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03492.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03492.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03492.1.fa to HG03492.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03492.1.fa
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00741.1.fa to HG00741.1
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03492.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00741.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00741.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03540.1.fa to HG03540.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03540.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03540.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02622.2.fa to HG02622.2
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01361.2.fa to HG01361.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02622.2.fa
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01361.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02622.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01361.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00621.1.fa to HG00621.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00621.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00621.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02717.2.fa to HG02717.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02717.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02717.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02055.1.fa to HG02055.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02055.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02055.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02055.1.fa to HG02055.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02055.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02055.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03540.2.fa to HG03540.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03540.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03540.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03492.2.fa to HG03492.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03492.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03492.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03492.2.fa to HG03492.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03492.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03492.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00621.2.fa to HG00621.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00621.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00621.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/_MINIGRAPH_.fa to _MINIGRAPH_
cactus_consolidated(chr12): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/_MINIGRAPH_.fa
cactus_consolidated(chr12): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02723.1.fa to HG02723.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02723.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02723.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03516.1.fa to HG03516.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03516.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03516.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00621.1.fa to HG00621.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00621.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00621.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03579.1.fa to HG03579.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03579.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03579.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03540.2.fa to HG03540.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03540.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03540.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02630.1.fa to HG02630.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02630.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02630.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03516.1.fa to HG03516.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03516.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03516.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02055.2.fa to HG02055.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02055.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02055.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00673.1.fa to HG00673.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00673.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00673.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00741.2.fa to HG00741.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00741.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00741.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02055.2.fa to HG02055.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02055.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02055.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01891.1.fa to HG01891.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01891.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01891.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03516.2.fa to HG03516.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03516.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03516.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02723.2.fa to HG02723.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02723.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02723.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03579.2.fa to HG03579.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03579.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG03579.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Constructed the initial flower with 15673 sequences and 93 events with string: ((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chr12): Established the first Flower in the hierarchy, 89 seconds have elapsed
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03516.2.fa to HG03516.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03516.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03516.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00673.2.fa to HG00673.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00673.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00673.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03579.1.fa to HG03579.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03579.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03579.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03540.1.fa to HG03540.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03540.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03540.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02630.2.fa to HG02630.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02630.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02630.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02818.1.fa to HG02818.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02818.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02818.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02080.2.fa to HG02080.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02080.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02080.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/NA18906.1.fa to NA18906.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/NA18906.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/NA18906.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03540.1.fa to HG03540.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03540.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03540.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00621.2.fa to HG00621.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00621.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00621.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00733.1.fa to HG00733.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00733.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00733.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03540.2.fa to HG03540.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03540.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03540.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02080.2.fa to HG02080.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02080.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02080.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01071.1.fa to HG01071.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01071.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01071.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01891.2.fa to HG01891.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01891.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01891.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03579.2.fa to HG03579.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03579.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG03579.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02818.2.fa to HG02818.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02818.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02818.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/NA18906.2.fa to NA18906.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/NA18906.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/NA18906.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02717.1.fa to HG02717.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02717.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02717.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03540.2.fa to HG03540.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03540.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03540.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00733.2.fa to HG00733.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00733.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00733.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03579.1.fa to HG03579.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03579.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03579.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02109.1.fa to HG02109.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02109.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02886.1.fa to HG02886.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02886.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02886.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03579.1.fa to HG03579.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03579.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03579.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/NA20129.1.fa to NA20129.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/NA20129.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/NA20129.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03579.2.fa to HG03579.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03579.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG03579.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00735.1.fa to HG00735.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00735.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00735.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02109.1.fa to HG02109.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02109.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/NA18906.1.fa to NA18906.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/NA18906.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/NA18906.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01071.2.fa to HG01071.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01071.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01071.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00673.1.fa to HG00673.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00673.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00673.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02717.2.fa to HG02717.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02717.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02717.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/NA18906.1.fa to NA18906.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/NA18906.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/NA18906.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03579.2.fa to HG03579.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03579.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG03579.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01928.1.fa to HG01928.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01928.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01928.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/NA20129.2.fa to NA20129.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/NA20129.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/NA20129.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02886.2.fa to HG02886.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02886.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02886.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00735.2.fa to HG00735.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00735.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00735.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02109.2.fa to HG02109.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02109.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/NA18906.2.fa to NA18906.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/NA18906.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/NA18906.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/NA18906.2.fa to NA18906.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/NA18906.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/NA18906.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/NA18906.1.fa to NA18906.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/NA18906.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/NA18906.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/NA21309.1.fa to NA21309.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/NA21309.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/NA21309.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00741.1.fa to HG00741.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00741.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00741.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02109.2.fa to HG02109.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02109.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02723.1.fa to HG02723.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02723.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02723.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03098.1.fa to HG03098.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03098.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03098.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01106.1.fa to HG01106.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01106.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01106.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/NA20129.1.fa to NA20129.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/NA20129.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/NA20129.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02145.1.fa to HG02145.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02145.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02145.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00673.2.fa to HG00673.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00673.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00673.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/NA18906.2.fa to NA18906.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/NA18906.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/NA18906.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/NA21309.2.fa to NA21309.2
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/NA21309.2.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/NA21309.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00741.2.fa to HG00741.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00741.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00741.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01928.2.fa to HG01928.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01928.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01928.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03098.2.fa to HG03098.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03098.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03098.2.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:50:52.031953: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/GRCh38.fa HG00438.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00438.1.fa HG00438.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00438.2.fa HG00621.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00621.1.fa HG00621.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00621.2.fa HG00673.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00673.1.fa HG00673.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00673.2.fa HG00733.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00733.1.fa HG00733.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00733.2.fa HG00735.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00735.1.fa HG00735.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00735.2.fa HG00741.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00741.1.fa HG00741.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00741.2.fa HG01071.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01071.1.fa HG01071.2 /da <...> 999ba98b3759d207/6b90/9563/tmp4b8_vsdf/Anc0.c2h.fa --outputReferenceFile /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chr2): Params file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/Anc0.config.xml
cactus_consolidated(chr2): Output file string : /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/Anc0.c2h
cactus_consolidated(chr2): Output hal fasta file string : /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/Anc0.c2h.fa
cactus_consolidated(chr2): Output reference fasta file string : /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/Anc0.ref
Malformed log message from 10.50.3.6
cactus_consolidated(chr2): Alignments file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/Anc0_primary.paf
cactus_consolidated(chr2): Secondary alignments file: (null)
cactus_consolidated(chr2): Constraint alignments file: (null)
cactus_consolidated(chr2): Species tree: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr2): Outgroup events:
cactus_consolidated(chr2): Reference event: Anc0
cactus_consolidated(chr2): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chr2): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chr2): Constructed the first flower
cactus_consolidated(chr2): Going to build the event tree with newick string: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr2): Parsed the tree
cactus_consolidated(chr2): Constructed the basic event tree
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/GRCh38.fa to GRCh38
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/GRCh38.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/GRCh38.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/NA20129.1.fa to NA20129.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/NA20129.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/NA20129.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/NA20129.2.fa to NA20129.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/NA20129.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/NA20129.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02723.2.fa to HG02723.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02723.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02723.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/NA20129.1.fa to NA20129.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/NA20129.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/NA20129.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01071.1.fa to HG01071.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01071.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01071.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/CHM13.fa to CHM13
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/CHM13.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/CHM13.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02145.1.fa to HG02145.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02145.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02145.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Converted alignment coordinates, 94 seconds have elapsed
cactus_consolidated(chr12): Stripped any unique IDs, 94 seconds have elapsed
cactus_consolidated(chr12): We found a max path distance between ingroups in the tree (((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;) of 0.050000, giving us and min final chain length of: 2048
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03453.1.fa to HG03453.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03453.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03453.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02145.2.fa to HG02145.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02145.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02145.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Starting annealing round with a minimum chain length of 2048 and an alignment trim of 3
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/NA21309.1.fa to NA21309.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/NA21309.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/NA21309.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/NA20129.2.fa to NA20129.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/NA20129.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/NA20129.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/NA20129.2.fa to NA20129.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/NA20129.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/NA20129.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01071.2.fa to HG01071.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01071.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01071.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01106.2.fa to HG01106.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01106.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00733.1.fa to HG00733.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00733.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00733.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02080.1.fa to HG02080.1
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02080.1.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG02080.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02818.1.fa to HG02818.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02818.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02818.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01952.1.fa to HG01952.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01952.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01952.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/NA21309.2.fa to NA21309.2
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/NA21309.2.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/NA21309.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03453.2.fa to HG03453.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03453.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03453.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/NA21309.1.fa to NA21309.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/NA21309.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/NA21309.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02145.2.fa to HG02145.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02145.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02145.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01106.1.fa to HG01106.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01106.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01106.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02148.1.fa to HG02148.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02148.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02148.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00438.1.fa to HG00438.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00438.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00438.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/CHM13.fa to CHM13
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/CHM13.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/CHM13.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Assigning sequence /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/_MINIGRAPH_.fa to _MINIGRAPH_
cactus_consolidated(chr14): Processing file: /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/_MINIGRAPH_.fa
cactus_consolidated(chr14): The file /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/NA21309.1.fa to NA21309.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/NA21309.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/NA21309.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03486.1.fa to HG03486.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03486.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02818.2.fa to HG02818.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02818.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02818.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/NA21309.2.fa to NA21309.2
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/NA21309.2.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/NA21309.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01106.2.fa to HG01106.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01106.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01109.1.fa to HG01109.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01109.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02080.1.fa to HG02080.1
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02080.1.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG02080.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00733.2.fa to HG00733.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00733.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00733.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Constructed the initial flower with 9401 sequences and 93 events with string: ((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chr14): Established the first Flower in the hierarchy, 62 seconds have elapsed
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01952.2.fa to HG01952.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01952.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01952.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02148.2.fa to HG02148.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02148.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02148.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03486.2.fa to HG03486.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03486.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/CHM13.fa to CHM13
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/CHM13.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/CHM13.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/NA21309.2.fa to NA21309.2
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/NA21309.2.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/NA21309.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02148.1.fa to HG02148.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02148.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02148.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01109.1.fa to HG01109.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01109.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Assigning sequence /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/_MINIGRAPH_.fa to _MINIGRAPH_
cactus_consolidated(chr18): Processing file: /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/_MINIGRAPH_.fa
cactus_consolidated(chr18): The file /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02886.1.fa to HG02886.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02886.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02886.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03492.1.fa to HG03492.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03492.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03492.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00438.2.fa to HG00438.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00438.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01109.2.fa to HG01109.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01109.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02080.1.fa to HG02080.1
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02080.1.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG02080.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Constructed the initial flower with 11928 sequences and 93 events with string: ((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chr18): Established the first Flower in the hierarchy, 51 seconds have elapsed
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01109.2.fa to HG01109.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01109.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/CHM13.fa to CHM13
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/CHM13.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/CHM13.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02257.1.fa to HG02257.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02257.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02257.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02886.2.fa to HG02886.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02886.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02886.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00735.1.fa to HG00735.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00735.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00735.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01978.1.fa to HG01978.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01978.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01978.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02148.2.fa to HG02148.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02148.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02148.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01123.1.fa to HG01123.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01123.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01123.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03492.2.fa to HG03492.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03492.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03492.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/_MINIGRAPH_.fa to _MINIGRAPH_
cactus_consolidated(chr16): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/_MINIGRAPH_.fa
cactus_consolidated(chr16): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Destroying 0 recoverable blocks
cactus_consolidated(chr21): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chr21): Sequence graph statistics after melting:
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01123.2.fa to HG01123.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01123.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01123.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02080.1.fa to HG02080.1
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02080.1.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG02080.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03516.1.fa to HG03516.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03516.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03516.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02257.2.fa to HG02257.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02257.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02257.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Constructed the initial flower with 14062 sequences and 93 events with string: ((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chr16): Established the first Flower in the hierarchy, 59 seconds have elapsed
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03098.1.fa to HG03098.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03098.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03098.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01123.1.fa to HG01123.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01123.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01123.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02257.1.fa to HG02257.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02257.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02257.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00621.1.fa to HG00621.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00621.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00621.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01175.1.fa to HG01175.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01175.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01175.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Converted alignment coordinates, 65 seconds have elapsed
cactus_consolidated(chr14): Stripped any unique IDs, 65 seconds have elapsed
cactus_consolidated(chr14): We found a max path distance between ingroups in the tree (((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;) of 0.050000, giving us and min final chain length of: 2048
cactus_consolidated(chr14): Starting annealing round with a minimum chain length of 2048 and an alignment trim of 3
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01978.2.fa to HG01978.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01978.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG01978.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00735.2.fa to HG00735.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00735.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00735.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03516.2.fa to HG03516.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03516.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03516.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Assigning sequence /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/_MINIGRAPH_.fa to _MINIGRAPH_
cactus_consolidated(chr11): Processing file: /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/_MINIGRAPH_.fa
cactus_consolidated(chr11): The file /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01175.2.fa to HG01175.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01175.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01175.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02486.1.fa to HG02486.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02486.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03098.2.fa to HG03098.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03098.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03098.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03540.1.fa to HG03540.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03540.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03540.1.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:50:58.568747: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/GRCh38.fa HG00438.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00438.1.fa HG00438.2 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00438.2.fa HG00621.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00621.1.fa HG00621.2 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00621.2.fa HG00673.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00673.1.fa HG00673.2 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00673.2.fa HG00733.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00733.1.fa HG00733.2 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00733.2.fa HG00735.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00735.1.fa HG00735.2 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00735.2.fa HG00741.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00741.1.fa HG00741.2 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00741.2.fa HG01071.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01071.1.fa HG01071.2 /da <...> a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/Anc0.c2h.fa --outputReferenceFile /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chrX): Params file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/Anc0.config.xml
cactus_consolidated(chrX): Output file string : /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/Anc0.c2h
cactus_consolidated(chrX): Output hal fasta file string : /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/Anc0.c2h.fa
cactus_consolidated(chrX): Output reference fasta file string : /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/Anc0.ref
Malformed log message from 10.50.3.7
cactus_consolidated(chrX): Alignments file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/Anc0_primary.paf
cactus_consolidated(chrX): Secondary alignments file: (null)
cactus_consolidated(chrX): Constraint alignments file: (null)
cactus_consolidated(chrX): Species tree: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chrX): Outgroup events:
cactus_consolidated(chrX): Reference event: Anc0
cactus_consolidated(chrX): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chrX): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chrX): Constructed the first flower
cactus_consolidated(chrX): Going to build the event tree with newick string: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chrX): Parsed the tree
cactus_consolidated(chrX): Constructed the basic event tree
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/GRCh38.fa to GRCh38
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/GRCh38.fa
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02257.2.fa to HG02257.2
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/GRCh38.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02257.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02257.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Converted alignment coordinates, 54 seconds have elapsed
cactus_consolidated(chr18): Stripped any unique IDs, 54 seconds have elapsed
cactus_consolidated(chr18): We found a max path distance between ingroups in the tree (((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;) of 0.050000, giving us and min final chain length of: 2048
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01243.1.fa to HG01243.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01243.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01243.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Starting annealing round with a minimum chain length of 2048 and an alignment trim of 3
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01123.2.fa to HG01123.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01123.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01123.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Constructed the initial flower with 15243 sequences and 93 events with string: ((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chr11): Established the first Flower in the hierarchy, 89 seconds have elapsed
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02055.1.fa to HG02055.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02055.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02055.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03453.1.fa to HG03453.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03453.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03453.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00741.1.fa to HG00741.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00741.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00741.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00621.2.fa to HG00621.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00621.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00621.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02486.2.fa to HG02486.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02486.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03540.2.fa to HG03540.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03540.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03540.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01243.2.fa to HG01243.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01243.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01243.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00438.1.fa to HG00438.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00438.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00438.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02486.1.fa to HG02486.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02486.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01258.1.fa to HG01258.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01258.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01258.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03453.2.fa to HG03453.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03453.2.fa
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03579.1.fa to HG03579.1
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03453.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03579.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03579.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01175.1.fa to HG01175.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01175.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01175.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02559.1.fa to HG02559.1
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02055.2.fa to HG02055.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02559.1.fa
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02055.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02559.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02055.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01258.2.fa to HG01258.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01258.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01258.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00741.2.fa to HG00741.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00741.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00741.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Converted alignment coordinates, 62 seconds have elapsed
cactus_consolidated(chr16): Stripped any unique IDs, 62 seconds have elapsed
cactus_consolidated(chr16): We found a max path distance between ingroups in the tree (((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;) of 0.050000, giving us and min final chain length of: 2048
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03579.2.fa to HG03579.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03579.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG03579.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Starting annealing round with a minimum chain length of 2048 and an alignment trim of 3
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00438.2.fa to HG00438.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00438.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): There were 58849 blocks in the sequence graph, representing 3042867442 total aligned bases
cactus_consolidated(chr21): Block degree stats: min 1, avg 64.957348, median 91, max 478
cactus_consolidated(chr21): Block support stats: min 0.000000, avg 0.012316, median 0.010989, max 0.500000
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00673.1.fa to HG00673.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00673.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00673.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03486.1.fa to HG03486.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03486.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02486.2.fa to HG02486.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02486.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01358.1.fa to HG01358.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01358.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01358.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01175.2.fa to HG01175.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01175.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01175.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02559.2.fa to HG02559.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02559.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02559.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/NA18906.1.fa to NA18906.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/NA18906.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/NA18906.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02080.2.fa to HG02080.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02080.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02080.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01358.2.fa to HG01358.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01358.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01358.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03486.2.fa to HG03486.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03486.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00621.1.fa to HG00621.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00621.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00621.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00621.2.fa to HG00621.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00621.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00621.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/NA18906.2.fa to NA18906.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/NA18906.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/NA18906.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01071.1.fa to HG01071.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01071.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01071.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01361.1.fa to HG01361.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01361.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01361.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02559.1.fa to HG02559.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02559.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02559.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02572.1.fa to HG02572.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02572.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02572.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01243.1.fa to HG01243.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01243.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01243.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00673.2.fa to HG00673.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00673.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00673.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/NA20129.1.fa to NA20129.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/NA20129.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/NA20129.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01361.2.fa to HG01361.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01361.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01361.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03492.1.fa to HG03492.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03492.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03492.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02109.1.fa to HG02109.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02109.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00673.1.fa to HG00673.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00673.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00673.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00673.2.fa to HG00673.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00673.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00673.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Converted alignment coordinates, 94 seconds have elapsed
cactus_consolidated(chr11): Stripped any unique IDs, 94 seconds have elapsed
cactus_consolidated(chr11): We found a max path distance between ingroups in the tree (((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;) of 0.050000, giving us and min final chain length of: 2048
cactus_consolidated(chr11): Starting annealing round with a minimum chain length of 2048 and an alignment trim of 3
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02572.2.fa to HG02572.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02572.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02572.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/NA20129.2.fa to NA20129.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/NA20129.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/NA20129.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01891.1.fa to HG01891.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01891.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01891.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01071.2.fa to HG01071.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01071.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01071.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02559.2.fa to HG02559.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02559.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02559.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03492.2.fa to HG03492.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03492.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03492.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01243.2.fa to HG01243.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01243.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01243.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01891.2.fa to HG01891.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01891.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01891.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/NA21309.1.fa to NA21309.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/NA21309.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/NA21309.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00733.1.fa to HG00733.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00733.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00733.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02109.2.fa to HG02109.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02109.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00733.1.fa to HG00733.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00733.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00733.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02622.1.fa to HG02622.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02622.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02622.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03516.1.fa to HG03516.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03516.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03516.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01928.1.fa to HG01928.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01928.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01928.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02572.1.fa to HG02572.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02572.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02572.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/NA21309.2.fa to NA21309.2
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/NA21309.2.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/NA21309.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01106.1.fa to HG01106.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01106.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01106.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01258.1.fa to HG01258.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01258.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01258.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00733.2.fa to HG00733.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00733.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00733.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01928.2.fa to HG01928.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01928.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01928.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02622.2.fa to HG02622.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02622.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02622.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/CHM13.fa to CHM13
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/CHM13.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/CHM13.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02145.1.fa to HG02145.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02145.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02145.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03516.2.fa to HG03516.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03516.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03516.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01952.1.fa to HG01952.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01952.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01952.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02572.2.fa to HG02572.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02572.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02572.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00733.2.fa to HG00733.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00733.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00733.2.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:51:06.178798: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/GRCh38.fa HG00438.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00438.1.fa HG00438.2 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00438.2.fa HG00621.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00621.1.fa HG00621.2 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00621.2.fa HG00673.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00673.1.fa HG00673.2 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00673.2.fa HG00733.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00733.1.fa HG00733.2 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00733.2.fa HG00735.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00735.1.fa HG00735.2 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00735.2.fa HG00741.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00741.1.fa HG00741.2 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00741.2.fa HG01071.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01071.1.fa HG01071.2 /da <...> a4aab14527c65d50/ac55/e096/tmpbjb_1n5a/Anc0.c2h.fa --outputReferenceFile /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chr7): Params file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/Anc0.config.xml
cactus_consolidated(chr7): Output file string : /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/Anc0.c2h
cactus_consolidated(chr7): Output hal fasta file string : /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/Anc0.c2h.fa
cactus_consolidated(chr7): Output reference fasta file string : /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/Anc0.ref
Malformed log message from 10.50.3.8
cactus_consolidated(chr7): Alignments file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/Anc0_primary.paf
cactus_consolidated(chr7): Secondary alignments file: (null)
cactus_consolidated(chr7): Constraint alignments file: (null)
cactus_consolidated(chr7): Species tree: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr7): Outgroup events:
cactus_consolidated(chr7): Reference event: Anc0
cactus_consolidated(chr7): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chr7): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chr7): Constructed the first flower
cactus_consolidated(chr7): Going to build the event tree with newick string: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr7): Parsed the tree
cactus_consolidated(chr7): Constructed the basic event tree
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/GRCh38.fa to GRCh38
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/GRCh38.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/GRCh38.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02080.1.fa to HG02080.1
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02080.1.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG02080.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00735.1.fa to HG00735.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00735.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00735.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01952.2.fa to HG01952.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01952.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01952.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01258.2.fa to HG01258.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01258.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01258.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02630.1.fa to HG02630.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02630.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02630.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03540.1.fa to HG03540.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03540.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03540.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01106.2.fa to HG01106.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01106.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02145.2.fa to HG02145.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02145.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02145.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/_MINIGRAPH_.fa to _MINIGRAPH_
cactus_consolidated(chr13): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/_MINIGRAPH_.fa
cactus_consolidated(chr13): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01978.1.fa to HG01978.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01978.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01978.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00438.1.fa to HG00438.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00438.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00438.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02622.1.fa to HG02622.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02622.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02622.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03540.2.fa to HG03540.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03540.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03540.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02630.2.fa to HG02630.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02630.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02630.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00735.2.fa to HG00735.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00735.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00735.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01978.2.fa to HG01978.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01978.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG01978.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00735.1.fa to HG00735.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00735.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00735.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01358.1.fa to HG01358.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01358.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01358.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Constructed the initial flower with 13609 sequences and 93 events with string: ((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chr13): Established the first Flower in the hierarchy, 67 seconds have elapsed
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01109.1.fa to HG01109.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01109.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02055.1.fa to HG02055.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02055.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02055.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02148.1.fa to HG02148.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02148.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02148.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00438.2.fa to HG00438.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00438.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02622.2.fa to HG02622.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02622.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02622.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03579.1.fa to HG03579.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03579.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03579.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02717.1.fa to HG02717.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02717.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02717.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00741.1.fa to HG00741.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00741.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00741.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02055.2.fa to HG02055.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02055.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02055.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Attaching the sequence to the cactus root 95, header chr21 with length 46709983 and 37884303 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01358.2.fa to HG01358.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01358.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01358.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02080.2.fa to HG02080.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02080.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02080.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01109.2.fa to HG01109.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01109.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00621.1.fa to HG00621.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00621.1.fa
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00735.2.fa to HG00735.2
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00621.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00735.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00735.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03579.2.fa to HG03579.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03579.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG03579.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02148.2.fa to HG02148.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02148.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02148.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02717.2.fa to HG02717.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02717.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02717.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02630.1.fa to HG02630.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02630.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02630.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00741.2.fa to HG00741.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00741.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00741.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Sequence graph statistics after annealing:
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02109.1.fa to HG02109.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02109.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01361.1.fa to HG01361.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01361.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01361.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/NA18906.1.fa to NA18906.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/NA18906.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/NA18906.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02109.2.fa to HG02109.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02109.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00621.2.fa to HG00621.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00621.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00621.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02723.1.fa to HG02723.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02723.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02723.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01071.1.fa to HG01071.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01071.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01071.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01123.1.fa to HG01123.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01123.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01123.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02630.2.fa to HG02630.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02630.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02630.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02257.1.fa to HG02257.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02257.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02257.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02145.1.fa to HG02145.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02145.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02145.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00741.1.fa to HG00741.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00741.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00741.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/NA18906.2.fa to NA18906.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/NA18906.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/NA18906.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Converted alignment coordinates, 70 seconds have elapsed
cactus_consolidated(chr13): Stripped any unique IDs, 70 seconds have elapsed
cactus_consolidated(chr13): We found a max path distance between ingroups in the tree (((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;) of 0.050000, giving us and min final chain length of: 2048
cactus_consolidated(chr13): Starting annealing round with a minimum chain length of 2048 and an alignment trim of 3
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01361.2.fa to HG01361.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01361.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01361.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02145.2.fa to HG02145.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02145.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02145.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02723.2.fa to HG02723.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02723.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02723.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00673.1.fa to HG00673.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00673.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00673.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01071.2.fa to HG01071.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01071.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01071.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02717.1.fa to HG02717.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02717.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02717.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/NA20129.1.fa to NA20129.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/NA20129.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/NA20129.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02148.1.fa to HG02148.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02148.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02148.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02257.2.fa to HG02257.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02257.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02257.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01123.2.fa to HG01123.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01123.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01123.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02818.1.fa to HG02818.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02818.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02818.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00741.2.fa to HG00741.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00741.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00741.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02148.2.fa to HG02148.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02148.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02148.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01891.1.fa to HG01891.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01891.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01891.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00673.2.fa to HG00673.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00673.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00673.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01106.1.fa to HG01106.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01106.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01106.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01106.2.fa to HG01106.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01106.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/NA20129.2.fa to NA20129.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/NA20129.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/NA20129.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02717.2.fa to HG02717.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02717.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02717.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02257.1.fa to HG02257.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02257.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02257.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02486.1.fa to HG02486.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02486.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02818.2.fa to HG02818.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02818.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02818.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01175.1.fa to HG01175.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01175.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01175.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02257.2.fa to HG02257.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02257.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02257.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/NA21309.1.fa to NA21309.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/NA21309.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/NA21309.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00733.1.fa to HG00733.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00733.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00733.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01109.1.fa to HG01109.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01109.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01109.2.fa to HG01109.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01109.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01891.2.fa to HG01891.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01891.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01891.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02723.1.fa to HG02723.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02723.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02723.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01071.1.fa to HG01071.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01071.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01071.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02486.1.fa to HG02486.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02486.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02886.1.fa to HG02886.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02886.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02886.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02486.2.fa to HG02486.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02486.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/NA21309.2.fa to NA21309.2
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/NA21309.2.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/NA21309.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01175.2.fa to HG01175.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01175.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01175.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02486.2.fa to HG02486.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02486.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01123.1.fa to HG01123.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01123.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01123.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00733.2.fa to HG00733.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00733.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00733.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01928.1.fa to HG01928.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01928.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01928.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02723.2.fa to HG02723.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02723.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02723.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02886.2.fa to HG02886.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02886.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02886.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02559.1.fa to HG02559.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02559.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02559.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/CHM13.fa to CHM13
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/CHM13.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/CHM13.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01123.2.fa to HG01123.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01123.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01123.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01071.2.fa to HG01071.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01071.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01071.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02559.1.fa to HG02559.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02559.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02559.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00735.1.fa to HG00735.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00735.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00735.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02559.2.fa to HG02559.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02559.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02559.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): There were 777010 blocks in the sequence graph, representing 11940122788 total aligned bases
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01243.1.fa to HG01243.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01243.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01243.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Block degree stats: min 1, avg 69.206242, median 83, max 108
cactus_consolidated(chr10): Block support stats: min 0.000000, avg 0.022261, median 0.011765, max 0.500000
cactus_consolidated(chr10): Starting melting round with a minimum chain length of 2
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02818.1.fa to HG02818.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02818.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02818.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01928.2.fa to HG01928.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01928.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01928.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03098.1.fa to HG03098.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03098.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03098.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02572.1.fa to HG02572.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02572.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02572.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02080.1.fa to HG02080.1
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02080.1.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG02080.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02572.2.fa to HG02572.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02572.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02572.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01175.1.fa to HG01175.1
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02559.2.fa to HG02559.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02559.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02559.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00735.2.fa to HG00735.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00735.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00735.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03098.2.fa to HG03098.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03098.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03098.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02818.2.fa to HG02818.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02818.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02818.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01243.2.fa to HG01243.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01243.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01243.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01106.1.fa to HG01106.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01106.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01106.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Assigning sequence /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/_MINIGRAPH_.fa to _MINIGRAPH_
cactus_consolidated(chr9): Processing file: /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/_MINIGRAPH_.fa
cactus_consolidated(chr9): The file /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01952.1.fa to HG01952.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01952.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01952.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02622.1.fa to HG02622.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02622.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02622.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01175.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01175.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02622.2.fa to HG02622.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02622.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02622.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03453.1.fa to HG03453.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03453.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03453.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01175.2.fa to HG01175.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01175.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01175.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00741.1.fa to HG00741.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00741.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00741.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Constructed the initial flower with 13210 sequences and 93 events with string: ((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chr9): Established the first Flower in the hierarchy, 88 seconds have elapsed
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02572.1.fa to HG02572.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02572.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02572.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02886.1.fa to HG02886.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02886.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02886.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01258.1.fa to HG01258.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01258.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01258.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02630.1.fa to HG02630.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02630.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02630.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01952.2.fa to HG01952.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01952.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01952.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01106.2.fa to HG01106.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01106.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03453.2.fa to HG03453.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03453.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03453.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01243.1.fa to HG01243.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01243.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01243.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01243.2.fa to HG01243.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01243.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01243.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02630.2.fa to HG02630.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02630.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02630.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): A melting round is destroying 3746 blocks with an average degree of 45.917779 from chains with length less than 2048. Total aligned bases lost: 27478019
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00741.2.fa to HG00741.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00741.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00741.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02886.2.fa to HG02886.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02886.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02886.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02572.2.fa to HG02572.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02572.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02572.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02717.1.fa to HG02717.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02717.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02717.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01978.1.fa to HG01978.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01978.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01978.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01258.2.fa to HG01258.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01258.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01258.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03486.1.fa to HG03486.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03486.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01258.1.fa to HG01258.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01258.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01258.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01258.2.fa to HG01258.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01258.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01258.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02717.2.fa to HG02717.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02717.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02717.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01071.1.fa to HG01071.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01071.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01071.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01109.1.fa to HG01109.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01109.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03098.1.fa to HG03098.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03098.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03098.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Destroying 1633 recoverable blocks
cactus_consolidated(chr20): The blocks covered 194742 columns for a total of 16031856 aligned bases
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02723.1.fa to HG02723.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02723.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02723.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02622.1.fa to HG02622.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02622.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02622.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03486.2.fa to HG03486.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03486.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01978.2.fa to HG01978.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01978.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG01978.2.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:51:22.668829: Running the command: "cactus_consolidated --sequences GRCh38 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/GRCh38.fa HG00438.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00438.1.fa HG00438.2 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00438.2.fa HG00621.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00621.1.fa HG00621.2 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00621.2.fa HG00673.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00673.1.fa HG00673.2 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00673.2.fa HG00733.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00733.1.fa HG00733.2 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00733.2.fa HG00735.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00735.1.fa HG00735.2 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00735.2.fa HG00741.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00741.1.fa HG00741.2 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00741.2.fa HG01071.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01071.1.fa HG01071.2 /da <...> a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/Anc0.c2h.fa --outputReferenceFile /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/Anc0.ref --outgroupEvents  --referenceEvent Anc0 --threads 64"
cactus_consolidated(chr1): Params file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/Anc0.config.xml
cactus_consolidated(chr1): Output file string : /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/Anc0.c2h
cactus_consolidated(chr1): Output hal fasta file string : /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/Anc0.c2h.fa
cactus_consolidated(chr1): Output reference fasta file string : /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/Anc0.ref
Malformed log message from 10.50.3.7
cactus_consolidated(chr1): Alignments file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/Anc0_primary.paf
cactus_consolidated(chr1): Secondary alignments file: (null)
cactus_consolidated(chr1): Constraint alignments file: (null)
cactus_consolidated(chr1): Species tree: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr1): Outgroup events:
cactus_consolidated(chr1): Reference event: Anc0
cactus_consolidated(chr1): Loaded the parameters files, 0 seconds have elapsed
cactus_consolidated(chr1): Set up the cactus disk, 0 seconds have elapsed
cactus_consolidated(chr1): Constructed the first flower
cactus_consolidated(chr1): Going to build the event tree with newick string: (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0;
cactus_consolidated(chr1): Parsed the tree
cactus_consolidated(chr1): Constructed the basic event tree
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/GRCh38.fa to GRCh38
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/GRCh38.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/GRCh38.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01358.1.fa to HG01358.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01358.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01358.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01358.2.fa to HG01358.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01358.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01358.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01358.1.fa to HG01358.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01358.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01358.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02723.2.fa to HG02723.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02723.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02723.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01071.2.fa to HG01071.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01071.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01071.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03098.2.fa to HG03098.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03098.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03098.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03492.1.fa to HG03492.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03492.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03492.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02818.1.fa to HG02818.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02818.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02818.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Converted alignment coordinates, 92 seconds have elapsed
cactus_consolidated(chr9): Stripped any unique IDs, 92 seconds have elapsed
cactus_consolidated(chr9): We found a max path distance between ingroups in the tree (((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;) of 0.050000, giving us and min final chain length of: 2048
cactus_consolidated(chr9): Starting annealing round with a minimum chain length of 2048 and an alignment trim of 3
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01109.2.fa to HG01109.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01109.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01361.1.fa to HG01361.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01361.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01361.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02622.2.fa to HG02622.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02622.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02622.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02055.1.fa to HG02055.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02055.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02055.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02818.2.fa to HG02818.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02818.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02818.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01358.2.fa to HG01358.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01358.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01358.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01106.1.fa to HG01106.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01106.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01106.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00438.1.fa to HG00438.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00438.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00438.1.fa is specified incomplete, the sequences will not be attached
2023-07-05 13:51:24.525448: Successfully ran: "hal2vg /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/efe8/f6cc/tmp5xlw3e3f/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 55.1397 seconds and 961.2 Mi memory with job-memory 8.7 Gi. Percent utilization: 10.79
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03492.2.fa to HG03492.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03492.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03492.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03453.1.fa to HG03453.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03453.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03453.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02886.1.fa to HG02886.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02886.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02886.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02630.1.fa to HG02630.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02630.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02630.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02055.2.fa to HG02055.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02055.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02055.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02886.2.fa to HG02886.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02886.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02886.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01361.2.fa to HG01361.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01361.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01361.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01123.1.fa to HG01123.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01123.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01123.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01106.2.fa to HG01106.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01106.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03516.1.fa to HG03516.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03516.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03516.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01361.1.fa to HG01361.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01361.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01361.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03453.2.fa to HG03453.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03453.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03453.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03098.1.fa to HG03098.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03098.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03098.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Sequence graph statistics after annealing:
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00438.2.fa to HG00438.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00438.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00438.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02080.2.fa to HG02080.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02080.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02080.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03098.2.fa to HG03098.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03098.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03098.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02630.2.fa to HG02630.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02630.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02630.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01891.1.fa to HG01891.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01891.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01891.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03516.2.fa to HG03516.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03516.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03516.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01109.1.fa to HG01109.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01109.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03486.1.fa to HG03486.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03486.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01123.2.fa to HG01123.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01123.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01123.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03453.1.fa to HG03453.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03453.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03453.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01361.2.fa to HG01361.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01361.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01361.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01891.2.fa to HG01891.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01891.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01891.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03540.1.fa to HG03540.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03540.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03540.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03453.2.fa to HG03453.2
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01109.2.fa to HG01109.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03453.2.fa
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01109.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03453.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02109.1.fa to HG02109.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02109.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02717.1.fa to HG02717.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02717.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02717.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00621.1.fa to HG00621.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00621.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00621.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03486.2.fa to HG03486.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03486.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03486.1.fa to HG03486.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03486.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01891.1.fa to HG01891.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01891.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01891.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03540.2.fa to HG03540.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03540.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03540.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01928.1.fa to HG01928.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01928.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01928.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01928.2.fa to HG01928.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01928.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01928.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01175.1.fa to HG01175.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01175.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01175.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03486.2.fa to HG03486.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03486.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02109.2.fa to HG02109.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02109.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02717.2.fa to HG02717.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02717.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02717.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01123.1.fa to HG01123.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01123.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01123.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03492.1.fa to HG03492.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03492.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03492.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03492.1.fa to HG03492.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03492.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03492.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00621.2.fa to HG00621.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00621.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00621.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03579.1.fa to HG03579.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03579.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03579.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01952.1.fa to HG01952.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01952.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01952.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01952.2.fa to HG01952.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01952.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01952.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03492.2.fa to HG03492.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03492.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03492.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01891.2.fa to HG01891.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01891.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01891.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Ran cactus caf, 234 seconds have elapsed
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02145.1.fa to HG02145.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02145.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02145.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01123.2.fa to HG01123.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01123.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01123.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01175.2.fa to HG01175.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01175.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01175.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03492.2.fa to HG03492.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03492.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03492.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02723.1.fa to HG02723.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02723.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02723.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03516.1.fa to HG03516.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03516.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03516.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03579.2.fa to HG03579.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03579.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG03579.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01978.1.fa to HG01978.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01978.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01978.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03516.2.fa to HG03516.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03516.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03516.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00673.1.fa to HG00673.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00673.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00673.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02145.2.fa to HG02145.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02145.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02145.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01175.1.fa to HG01175.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01175.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01175.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01928.1.fa to HG01928.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01928.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01928.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03516.1.fa to HG03516.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03516.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03516.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/NA18906.1.fa to NA18906.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/NA18906.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/NA18906.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Sequence graph statistics after annealing:
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02723.2.fa to HG02723.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02723.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02723.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03540.1.fa to HG03540.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03540.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03540.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): There were 552135 blocks in the sequence graph, representing 7209506294 total aligned bases
cactus_consolidated(chr17): Block degree stats: min 1, avg 69.395847, median 83, max 186
cactus_consolidated(chr17): Block support stats: min 0.000000, avg 0.021449, median 0.011628, max 0.500000
cactus_consolidated(chr17): Starting melting round with a minimum chain length of 2
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01243.1.fa to HG01243.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01243.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01243.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01978.2.fa to HG01978.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01978.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG01978.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03540.2.fa to HG03540.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03540.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03540.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01175.2.fa to HG01175.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01175.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01175.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02148.1.fa to HG02148.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02148.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02148.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/NA18906.2.fa to NA18906.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/NA18906.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/NA18906.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03516.2.fa to HG03516.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03516.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03516.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01928.2.fa to HG01928.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01928.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01928.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03579.1.fa to HG03579.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03579.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03579.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00673.2.fa to HG00673.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00673.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00673.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02818.1.fa to HG02818.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02818.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02818.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02055.1.fa to HG02055.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02055.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02055.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02055.2.fa to HG02055.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02055.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02055.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03579.2.fa to HG03579.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03579.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG03579.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/NA20129.1.fa to NA20129.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/NA20129.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/NA20129.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01243.2.fa to HG01243.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01243.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01243.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02148.2.fa to HG02148.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02148.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02148.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01243.1.fa to HG01243.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01243.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01243.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03540.1.fa to HG03540.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03540.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03540.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/NA18906.1.fa to NA18906.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/NA18906.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/NA18906.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02080.2.fa to HG02080.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02080.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02080.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01952.1.fa to HG01952.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01952.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01952.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02818.2.fa to HG02818.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02818.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02818.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00733.1.fa to HG00733.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00733.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00733.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/NA18906.2.fa to NA18906.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/NA18906.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/NA18906.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/NA20129.2.fa to NA20129.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/NA20129.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/NA20129.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01243.2.fa to HG01243.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01243.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01243.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02257.1.fa to HG02257.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02257.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02257.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03540.2.fa to HG03540.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03540.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03540.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02109.1.fa to HG02109.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02109.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/NA20129.1.fa to NA20129.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/NA20129.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/NA20129.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01258.1.fa to HG01258.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01258.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01258.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02886.1.fa to HG02886.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02886.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02886.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01952.2.fa to HG01952.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01952.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01952.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/NA21309.1.fa to NA21309.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/NA21309.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/NA21309.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/NA20129.2.fa to NA20129.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/NA20129.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/NA20129.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Sequence graph statistics after annealing:
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00733.2.fa to HG00733.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00733.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00733.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01258.1.fa to HG01258.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01258.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01258.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03579.1.fa to HG03579.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03579.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03579.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/NA21309.1.fa to NA21309.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/NA21309.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/NA21309.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02257.2.fa to HG02257.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02257.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02257.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02109.2.fa to HG02109.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02109.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/NA21309.2.fa to NA21309.2
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/NA21309.2.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/NA21309.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02886.2.fa to HG02886.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02886.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02886.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/NA21309.2.fa to NA21309.2
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/NA21309.2.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/NA21309.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01258.2.fa to HG01258.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01258.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01258.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01978.1.fa to HG01978.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01978.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01978.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01258.2.fa to HG01258.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01258.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01258.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03579.2.fa to HG03579.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03579.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG03579.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/CHM13.fa to CHM13
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/CHM13.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/CHM13.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02145.1.fa to HG02145.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02145.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02145.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02145.2.fa to HG02145.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02145.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02145.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/CHM13.fa to CHM13
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/CHM13.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/CHM13.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02486.1.fa to HG02486.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02486.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00735.1.fa to HG00735.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00735.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00735.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Destroying 0 recoverable blocks
cactus_consolidated(chr20): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03098.1.fa to HG03098.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03098.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03098.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Sequence graph statistics after melting:
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02080.1.fa to HG02080.1
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02080.1.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG02080.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01978.2.fa to HG01978.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01978.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG01978.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01358.1.fa to HG01358.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01358.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01358.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01358.1.fa to HG01358.1
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/NA18906.1.fa to NA18906.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01358.1.fa
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/NA18906.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01358.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/NA18906.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02148.1.fa to HG02148.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02148.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02148.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02080.1.fa to HG02080.1
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02080.1.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG02080.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/_MINIGRAPH_.fa to _MINIGRAPH_
cactus_consolidated(chr15): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/_MINIGRAPH_.fa
cactus_consolidated(chr15): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02486.2.fa to HG02486.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02486.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03098.2.fa to HG03098.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03098.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03098.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00735.2.fa to HG00735.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00735.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00735.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Constructed the initial flower with 10745 sequences and 93 events with string: ((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chr15): Established the first Flower in the hierarchy, 56 seconds have elapsed
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01358.2.fa to HG01358.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01358.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01358.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02148.2.fa to HG02148.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02148.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02148.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/_MINIGRAPH_.fa to _MINIGRAPH_
cactus_consolidated(chr8): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/_MINIGRAPH_.fa
cactus_consolidated(chr8): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02055.1.fa to HG02055.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02055.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02055.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/NA18906.2.fa to NA18906.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/NA18906.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/NA18906.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02559.1.fa to HG02559.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02559.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02559.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01358.2.fa to HG01358.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01358.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01358.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02257.1.fa to HG02257.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02257.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02257.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01361.1.fa to HG01361.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01361.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01361.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03453.1.fa to HG03453.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03453.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03453.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Constructed the initial flower with 17339 sequences and 93 events with string: ((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chr8): Established the first Flower in the hierarchy, 97 seconds have elapsed
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00741.1.fa to HG00741.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00741.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00741.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/NA20129.1.fa to NA20129.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/NA20129.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/NA20129.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02055.2.fa to HG02055.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02055.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02055.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02559.2.fa to HG02559.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02559.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02559.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01361.2.fa to HG01361.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01361.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01361.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02257.2.fa to HG02257.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02257.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02257.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01361.1.fa to HG01361.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01361.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01361.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Converted alignment coordinates, 58 seconds have elapsed
cactus_consolidated(chr15): Stripped any unique IDs, 58 seconds have elapsed
cactus_consolidated(chr15): We found a max path distance between ingroups in the tree (((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;) of 0.050000, giving us and min final chain length of: 2048
cactus_consolidated(chr15): Starting annealing round with a minimum chain length of 2048 and an alignment trim of 3
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03453.2.fa to HG03453.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03453.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03453.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): There were 417516 blocks in the sequence graph, representing 6829480262 total aligned bases
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/NA20129.2.fa to NA20129.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/NA20129.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/NA20129.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Block degree stats: min 1, avg 68.820584, median 83, max 113
cactus_consolidated(chr18): Block support stats: min 0.000000, avg 0.021817, median 0.011628, max 0.500000
cactus_consolidated(chr18): Starting melting round with a minimum chain length of 2
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02080.2.fa to HG02080.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02080.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02080.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00741.2.fa to HG00741.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00741.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00741.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02572.1.fa to HG02572.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02572.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02572.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Sequence graph statistics after annealing:
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01891.1.fa to HG01891.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01891.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01891.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02486.1.fa to HG02486.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02486.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02486.2.fa to HG02486.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02486.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/NA21309.1.fa to NA21309.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/NA21309.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/NA21309.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03486.1.fa to HG03486.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03486.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01361.2.fa to HG01361.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01361.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01361.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02109.1.fa to HG02109.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02109.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02572.2.fa to HG02572.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02572.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02572.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01891.2.fa to HG01891.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01891.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01891.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): There were 97334 blocks in the sequence graph, representing 5368679328 total aligned bases
cactus_consolidated(chr20): Block degree stats: min 1, avg 62.347474, median 91, max 94
cactus_consolidated(chr20): Block support stats: min 0.000000, avg 0.011777, median 0.010989, max 0.500000
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01071.1.fa to HG01071.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01071.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01071.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02559.1.fa to HG02559.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02559.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02559.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/NA21309.2.fa to NA21309.2
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/NA21309.2.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/NA21309.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03486.2.fa to HG03486.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03486.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01928.1.fa to HG01928.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01928.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01928.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02622.1.fa to HG02622.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02622.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02622.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01891.1.fa to HG01891.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01891.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01891.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02109.2.fa to HG02109.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02109.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02559.2.fa to HG02559.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02559.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02559.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/CHM13.fa to CHM13
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/CHM13.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/CHM13.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Converted alignment coordinates, 102 seconds have elapsed
cactus_consolidated(chr8): Stripped any unique IDs, 102 seconds have elapsed
cactus_consolidated(chr8): We found a max path distance between ingroups in the tree (((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;) of 0.050000, giving us and min final chain length of: 2048
cactus_consolidated(chr8): Starting annealing round with a minimum chain length of 2048 and an alignment trim of 3
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01071.2.fa to HG01071.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01071.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01071.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): A melting round is destroying 180275 blocks with an average degree of 67.431774 from chains with length less than 2. Total aligned bases lost: 12156263
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03492.1.fa to HG03492.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03492.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03492.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01928.2.fa to HG01928.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01928.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01928.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02572.1.fa to HG02572.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02572.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02572.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02572.2.fa to HG02572.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02572.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02572.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02622.2.fa to HG02622.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02622.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02622.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02145.1.fa to HG02145.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02145.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02145.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02080.1.fa to HG02080.1
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02080.1.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG02080.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01891.2.fa to HG01891.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01891.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01891.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Sequence graph statistics after annealing:
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03492.2.fa to HG03492.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03492.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03492.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01952.1.fa to HG01952.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01952.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01952.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01106.1.fa to HG01106.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01106.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01106.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02630.1.fa to HG02630.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02630.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02630.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02622.1.fa to HG02622.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02622.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02622.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02145.2.fa to HG02145.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02145.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02145.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Assigning sequence /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/_MINIGRAPH_.fa to _MINIGRAPH_
cactus_consolidated(chr6): Processing file: /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/_MINIGRAPH_.fa
cactus_consolidated(chr6): The file /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01952.2.fa to HG01952.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01952.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01952.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03516.1.fa to HG03516.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03516.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03516.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01928.1.fa to HG01928.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01928.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01928.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02622.2.fa to HG02622.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02622.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02622.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02630.2.fa to HG02630.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02630.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02630.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01106.2.fa to HG01106.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01106.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01106.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr6): Constructed the initial flower with 19860 sequences and 93 events with string: ((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chr6): Established the first Flower in the hierarchy, 113 seconds have elapsed
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02148.1.fa to HG02148.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02148.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02148.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01978.1.fa to HG01978.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01978.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01978.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03516.2.fa to HG03516.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03516.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03516.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02630.1.fa to HG02630.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02630.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02630.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02717.1.fa to HG02717.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02717.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02717.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01928.2.fa to HG01928.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01928.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01928.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Sequence graph statistics after annealing:
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02148.2.fa to HG02148.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02148.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02148.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01978.2.fa to HG01978.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01978.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG01978.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01109.1.fa to HG01109.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01109.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02630.2.fa to HG02630.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02630.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02630.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): There were 489804 blocks in the sequence graph, representing 8026571424 total aligned bases
cactus_consolidated(chr14): Block degree stats: min 1, avg 73.045263, median 84, max 280
cactus_consolidated(chr14): Block support stats: min 0.000000, avg 0.020421, median 0.011628, max 0.500000
cactus_consolidated(chr14): Starting melting round with a minimum chain length of 2
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03540.1.fa to HG03540.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03540.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03540.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02717.2.fa to HG02717.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02717.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02717.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02055.1.fa to HG02055.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02055.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02055.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): A melting round is destroying 126373 blocks with an average degree of 67.433851 from chains with length less than 2. Total aligned bases lost: 8521818
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01952.1.fa to HG01952.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01952.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01952.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02717.1.fa to HG02717.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02717.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02717.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02717.2.fa to HG02717.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02717.2.fa
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02257.1.fa to HG02257.1
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02717.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02257.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02257.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01109.2.fa to HG01109.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01109.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03540.2.fa to HG03540.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03540.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03540.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Ran extended flowers ready for bar, 258 seconds have elapsed
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02723.1.fa to HG02723.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02723.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02723.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02055.2.fa to HG02055.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02055.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02055.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02723.1.fa to HG02723.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02723.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02723.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02257.2.fa to HG02257.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02257.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02257.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01952.2.fa to HG01952.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01952.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01952.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03579.1.fa to HG03579.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03579.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03579.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02723.2.fa to HG02723.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02723.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02723.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02080.2.fa to HG02080.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02080.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02080.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01123.1.fa to HG01123.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01123.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01123.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02723.2.fa to HG02723.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02723.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02723.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02486.1.fa to HG02486.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02486.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Attaching the sequence to the cactus root 3311, header chr20 with length 66210255 and 59016336 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chr6): Converted alignment coordinates, 119 seconds have elapsed
cactus_consolidated(chr6): Stripped any unique IDs, 119 seconds have elapsed
cactus_consolidated(chr6): We found a max path distance between ingroups in the tree (((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;) of 0.050000, giving us and min final chain length of: 2048
cactus_consolidated(chr6): Starting annealing round with a minimum chain length of 2048 and an alignment trim of 3
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02109.1.fa to HG02109.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02109.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03579.2.fa to HG03579.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03579.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG03579.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02818.1.fa to HG02818.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02818.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02818.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01978.1.fa to HG01978.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01978.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01978.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02818.1.fa to HG02818.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02818.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02818.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01123.2.fa to HG01123.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01123.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01123.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02109.2.fa to HG02109.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02109.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02486.2.fa to HG02486.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02486.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/NA18906.1.fa to NA18906.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/NA18906.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/NA18906.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02818.2.fa to HG02818.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02818.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02818.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02818.2.fa to HG02818.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02818.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02818.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): There were 542876 blocks in the sequence graph, representing 7259855732 total aligned bases
cactus_consolidated(chr16): Block degree stats: min 1, avg 68.952326, median 82, max 169
cactus_consolidated(chr16): Block support stats: min 0.000000, avg 0.023262, median 0.011765, max 0.500000
cactus_consolidated(chr16): Starting melting round with a minimum chain length of 2
cactus_consolidated(chr18): A melting round is destroying 94927 blocks with an average degree of 66.732247 from chains with length less than 2. Total aligned bases lost: 6334692
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01978.2.fa to HG01978.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01978.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG01978.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Starting melting round with a minimum chain length of 32
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02145.1.fa to HG02145.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02145.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02145.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02886.1.fa to HG02886.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02886.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02886.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01175.1.fa to HG01175.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01175.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01175.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02886.1.fa to HG02886.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02886.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02886.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02559.1.fa to HG02559.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02559.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02559.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/NA18906.2.fa to NA18906.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/NA18906.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/NA18906.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02145.2.fa to HG02145.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02145.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02145.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02886.2.fa to HG02886.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02886.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02886.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02055.1.fa to HG02055.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02055.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02055.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02886.2.fa to HG02886.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02886.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02886.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/NA20129.1.fa to NA20129.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/NA20129.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/NA20129.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02559.2.fa to HG02559.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02559.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02559.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01175.2.fa to HG01175.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01175.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01175.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02148.1.fa to HG02148.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02148.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02148.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03098.1.fa to HG03098.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03098.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03098.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03098.2.fa to HG03098.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03098.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03098.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Starting melting round with a minimum chain length of 32
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03098.1.fa to HG03098.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03098.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03098.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/NA20129.2.fa to NA20129.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/NA20129.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/NA20129.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02572.1.fa to HG02572.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02572.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02572.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02148.2.fa to HG02148.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02148.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02148.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02055.2.fa to HG02055.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02055.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02055.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03453.1.fa to HG03453.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03453.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03453.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01243.1.fa to HG01243.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01243.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01243.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03098.2.fa to HG03098.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03098.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03098.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/NA21309.1.fa to NA21309.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/NA21309.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/NA21309.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03453.2.fa to HG03453.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03453.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03453.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02257.1.fa to HG02257.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02257.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02257.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02572.2.fa to HG02572.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02572.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02572.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02080.2.fa to HG02080.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02080.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02080.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01243.2.fa to HG01243.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01243.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01243.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03486.1.fa to HG03486.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03486.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03453.1.fa to HG03453.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03453.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03453.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02257.2.fa to HG02257.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02257.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02257.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/NA21309.2.fa to NA21309.2
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/NA21309.2.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/NA21309.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Starting melting round with a minimum chain length of 32
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02622.1.fa to HG02622.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02622.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02622.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03486.2.fa to HG03486.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03486.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02486.1.fa to HG02486.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02486.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02109.1.fa to HG02109.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02109.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03453.2.fa to HG03453.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03453.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03453.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/CHM13.fa to CHM13
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/CHM13.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/CHM13.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01258.1.fa to HG01258.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01258.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01258.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02622.2.fa to HG02622.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02622.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02622.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03492.1.fa to HG03492.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03492.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03492.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03492.2.fa to HG03492.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03492.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03492.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02486.2.fa to HG02486.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02486.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03486.1.fa to HG03486.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03486.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02080.1.fa to HG02080.1
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02080.1.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG02080.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02109.2.fa to HG02109.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02109.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03516.1.fa to HG03516.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03516.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03516.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01258.2.fa to HG01258.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01258.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01258.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02630.1.fa to HG02630.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02630.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02630.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02559.1.fa to HG02559.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02559.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02559.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03486.2.fa to HG03486.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03486.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03516.2.fa to HG03516.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03516.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03516.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Assigning sequence /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/_MINIGRAPH_.fa to _MINIGRAPH_
cactus_consolidated(chr4): Processing file: /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/_MINIGRAPH_.fa
cactus_consolidated(chr4): The file /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02559.2.fa to HG02559.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02559.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02559.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02145.1.fa to HG02145.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02145.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02145.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02630.2.fa to HG02630.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02630.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02630.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03492.1.fa to HG03492.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03492.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03492.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01358.1.fa to HG01358.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01358.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01358.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03540.1.fa to HG03540.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03540.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03540.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): There were 538258 blocks in the sequence graph, representing 8720552265 total aligned bases
cactus_consolidated(chr13): Block degree stats: min 1, avg 69.523450, median 83, max 114
cactus_consolidated(chr13): Block support stats: min 0.000000, avg 0.021052, median 0.011628, max 0.500000
cactus_consolidated(chr13): Starting melting round with a minimum chain length of 2
cactus_consolidated(chr4): Constructed the initial flower with 22191 sequences and 93 events with string: ((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chr4): Established the first Flower in the hierarchy, 126 seconds have elapsed
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02572.1.fa to HG02572.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02572.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02572.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Sequence graph statistics after annealing:
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02717.1.fa to HG02717.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02717.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02717.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03492.2.fa to HG03492.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03492.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03492.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03540.2.fa to HG03540.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03540.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03540.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02145.2.fa to HG02145.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02145.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02145.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01358.2.fa to HG01358.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01358.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01358.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02572.2.fa to HG02572.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02572.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02572.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): A melting round is destroying 110591 blocks with an average degree of 71.065575 from chains with length less than 2. Total aligned bases lost: 7859213
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03579.1.fa to HG03579.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03579.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03579.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03579.2.fa to HG03579.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03579.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG03579.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03516.1.fa to HG03516.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03516.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03516.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02717.2.fa to HG02717.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02717.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02717.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Ran cactus caf, 253 seconds have elapsed
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02622.1.fa to HG02622.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02622.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02622.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02148.1.fa to HG02148.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02148.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02148.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/NA18906.1.fa to NA18906.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/NA18906.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/NA18906.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01361.1.fa to HG01361.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01361.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01361.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03516.2.fa to HG03516.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03516.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03516.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02723.1.fa to HG02723.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02723.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02723.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02622.2.fa to HG02622.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02622.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02622.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): Sequence graph statistics after annealing:
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/NA18906.2.fa to NA18906.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/NA18906.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/NA18906.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02148.2.fa to HG02148.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02148.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02148.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): There were 732017 blocks in the sequence graph, representing 11890408904 total aligned bases
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03540.1.fa to HG03540.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03540.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03540.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01361.2.fa to HG01361.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01361.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01361.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): Block degree stats: min 1, avg 71.506320, median 84, max 94
cactus_consolidated(chr12): Block support stats: min 0.000000, avg 0.019402, median 0.011628, max 0.500000
cactus_consolidated(chr12): Starting melting round with a minimum chain length of 2
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02630.1.fa to HG02630.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02630.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02630.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02723.2.fa to HG02723.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02723.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02723.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/NA20129.1.fa to NA20129.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/NA20129.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/NA20129.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03540.2.fa to HG03540.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03540.2.fa
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02630.2.fa to HG02630.2
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03540.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02630.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02630.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02257.1.fa to HG02257.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02257.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02257.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/NA20129.2.fa to NA20129.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/NA20129.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/NA20129.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02818.1.fa to HG02818.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02818.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02818.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01891.1.fa to HG01891.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01891.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01891.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr4): Converted alignment coordinates, 132 seconds have elapsed
cactus_consolidated(chr4): Stripped any unique IDs, 132 seconds have elapsed
cactus_consolidated(chr4): We found a max path distance between ingroups in the tree (((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;) of 0.050000, giving us and min final chain length of: 2048
cactus_consolidated(chr4): Starting annealing round with a minimum chain length of 2048 and an alignment trim of 3
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02717.1.fa to HG02717.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02717.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02717.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03579.1.fa to HG03579.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03579.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03579.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/NA21309.1.fa to NA21309.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/NA21309.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/NA21309.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02818.2.fa to HG02818.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02818.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02818.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02257.2.fa to HG02257.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02257.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02257.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01891.2.fa to HG01891.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01891.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01891.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02717.2.fa to HG02717.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02717.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02717.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/NA21309.2.fa to NA21309.2
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/NA21309.2.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/NA21309.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03579.2.fa to HG03579.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03579.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG03579.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): A melting round is destroying 123249 blocks with an average degree of 67.925046 from chains with length less than 2. Total aligned bases lost: 8371694
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02886.1.fa to HG02886.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02886.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02886.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Starting melting round with a minimum chain length of 32
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/CHM13.fa to CHM13
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/CHM13.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/CHM13.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02723.1.fa to HG02723.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02723.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02723.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02486.1.fa to HG02486.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02486.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01928.1.fa to HG01928.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01928.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01928.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/NA18906.1.fa to NA18906.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/NA18906.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/NA18906.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): There were 690841 blocks in the sequence graph, representing 11944083626 total aligned bases
cactus_consolidated(chr11): Block degree stats: min 1, avg 71.025184, median 84, max 103
cactus_consolidated(chr11): Block support stats: min 0.000000, avg 0.020197, median 0.011628, max 0.500000
cactus_consolidated(chr11): Starting melting round with a minimum chain length of 2
cactus_consolidated(chr18): A melting round is destroying 194428 blocks with an average degree of 70.235990 from chains with length less than 32. Total aligned bases lost: 68361401
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02723.2.fa to HG02723.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02723.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02723.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02886.2.fa to HG02886.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02886.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02886.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02080.1.fa to HG02080.1
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02080.1.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG02080.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/NA18906.2.fa to NA18906.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/NA18906.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/NA18906.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02486.2.fa to HG02486.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02486.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01928.2.fa to HG01928.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01928.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01928.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/_MINIGRAPH_.fa to _MINIGRAPH_
cactus_consolidated(chrX): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/_MINIGRAPH_.fa
cactus_consolidated(chrX): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02818.1.fa to HG02818.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02818.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02818.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03098.1.fa to HG03098.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03098.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03098.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/NA20129.1.fa to NA20129.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/NA20129.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/NA20129.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): A melting round is destroying 256381 blocks with an average degree of 70.356586 from chains with length less than 32. Total aligned bases lost: 91917991
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02818.2.fa to HG02818.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02818.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02818.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Constructed the initial flower with 18400 sequences and 93 events with string: ((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chrX): Established the first Flower in the hierarchy, 85 seconds have elapsed
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02559.1.fa to HG02559.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02559.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02559.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01952.1.fa to HG01952.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01952.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01952.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03098.2.fa to HG03098.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03098.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03098.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/NA20129.2.fa to NA20129.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/NA20129.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/NA20129.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02886.1.fa to HG02886.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02886.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02886.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03453.1.fa to HG03453.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03453.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03453.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02559.2.fa to HG02559.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02559.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02559.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01952.2.fa to HG01952.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01952.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01952.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/NA21309.1.fa to NA21309.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/NA21309.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/NA21309.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02886.2.fa to HG02886.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02886.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02886.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03453.2.fa to HG03453.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03453.2.fa
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03098.1.fa to HG03098.1
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03453.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03098.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03098.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/NA21309.2.fa to NA21309.2
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/NA21309.2.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/NA21309.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Converted alignment coordinates, 89 seconds have elapsed
cactus_consolidated(chrX): Stripped any unique IDs, 89 seconds have elapsed
cactus_consolidated(chrX): We found a max path distance between ingroups in the tree (((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;) of 0.050000, giving us and min final chain length of: 2048
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01978.1.fa to HG01978.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01978.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01978.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): Starting annealing round with a minimum chain length of 2048 and an alignment trim of 3
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02572.1.fa to HG02572.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02572.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02572.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Starting melting round with a minimum chain length of 32
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03098.2.fa to HG03098.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03098.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03098.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/CHM13.fa to CHM13
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/CHM13.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/CHM13.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03486.1.fa to HG03486.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03486.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): Starting melting round with a minimum chain length of 512
cactus_consolidated(chr19): Destroying 5109 recoverable blocks
cactus_consolidated(chr19): The blocks covered 584503 columns for a total of 41141948 aligned bases
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03453.1.fa to HG03453.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03453.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03453.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01978.2.fa to HG01978.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01978.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG01978.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02572.2.fa to HG02572.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02572.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02572.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02080.1.fa to HG02080.1
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02080.1.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG02080.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03486.2.fa to HG03486.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03486.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): A melting round is destroying 365046 blocks with an average degree of 69.805931 from chains with length less than 32. Total aligned bases lost: 128017197
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03453.2.fa to HG03453.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03453.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03453.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Assigning sequence /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/_MINIGRAPH_.fa to _MINIGRAPH_
cactus_consolidated(chr5): Processing file: /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/_MINIGRAPH_.fa
cactus_consolidated(chr5): The file /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02055.1.fa to HG02055.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02055.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02055.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02622.1.fa to HG02622.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02622.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02622.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03492.1.fa to HG03492.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03492.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03492.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): A melting round is destroying 123377 blocks with an average degree of 66.968827 from chains with length less than 2. Total aligned bases lost: 8262413
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03486.1.fa to HG03486.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03486.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Constructed the initial flower with 21650 sequences and 93 events with string: ((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chr5): Established the first Flower in the hierarchy, 121 seconds have elapsed
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03492.2.fa to HG03492.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03492.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03492.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02055.2.fa to HG02055.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02055.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02055.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03486.2.fa to HG03486.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03486.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02622.2.fa to HG02622.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02622.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02622.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): Starting melting round with a minimum chain length of 512
cactus_consolidated(chr15): There were 476838 blocks in the sequence graph, representing 7312432259 total aligned bases
cactus_consolidated(chr15): Block degree stats: min 1, avg 67.487992, median 81, max 95
cactus_consolidated(chr15): Block support stats: min 0.000000, avg 0.025245, median 0.011905, max 0.500000
cactus_consolidated(chr15): Starting melting round with a minimum chain length of 2
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03492.1.fa to HG03492.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03492.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03492.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03516.1.fa to HG03516.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03516.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03516.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02080.2.fa to HG02080.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02080.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02080.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr21): Ran extended flowers ready for bar, 275 seconds have elapsed
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02630.1.fa to HG02630.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02630.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02630.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03492.2.fa to HG03492.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03492.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03492.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03516.2.fa to HG03516.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03516.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03516.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03516.1.fa to HG03516.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03516.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03516.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02109.1.fa to HG02109.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02109.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02109.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02630.2.fa to HG02630.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02630.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02630.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03540.1.fa to HG03540.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03540.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03540.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03516.2.fa to HG03516.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03516.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03516.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02109.2.fa to HG02109.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02109.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02109.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Converted alignment coordinates, 126 seconds have elapsed
cactus_consolidated(chr5): Stripped any unique IDs, 126 seconds have elapsed
cactus_consolidated(chr5): We found a max path distance between ingroups in the tree (((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;) of 0.050000, giving us and min final chain length of: 2048
cactus_consolidated(chr5): Starting annealing round with a minimum chain length of 2048 and an alignment trim of 3
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02717.1.fa to HG02717.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02717.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02717.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03540.1.fa to HG03540.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03540.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03540.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03540.2.fa to HG03540.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03540.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03540.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): There were 669088 blocks in the sequence graph, representing 10522067725 total aligned bases
cactus_consolidated(chr9): Block degree stats: min 1, avg 73.168576, median 84, max 200
cactus_consolidated(chr9): Block support stats: min 0.000000, avg 0.020641, median 0.011628, max 0.500000
cactus_consolidated(chr9): Starting melting round with a minimum chain length of 2
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02145.1.fa to HG02145.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02145.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02145.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): A melting round is destroying 233515 blocks with an average degree of 72.612205 from chains with length less than 32. Total aligned bases lost: 85499468
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03540.2.fa to HG03540.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03540.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03540.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Starting melting round with a minimum chain length of 32
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03579.1.fa to HG03579.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03579.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03579.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02717.2.fa to HG02717.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02717.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02717.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): A melting round is destroying 9217 blocks with an average degree of 37.385809 from chains with length less than 512. Total aligned bases lost: 18071292
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03579.1.fa to HG03579.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03579.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03579.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): Sequence graph statistics after annealing:
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02145.2.fa to HG02145.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02145.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02145.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03579.2.fa to HG03579.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03579.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG03579.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03579.2.fa to HG03579.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03579.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG03579.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02723.1.fa to HG02723.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02723.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02723.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/NA18906.1.fa to NA18906.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/NA18906.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/NA18906.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02148.1.fa to HG02148.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02148.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02148.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/NA18906.1.fa to NA18906.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/NA18906.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/NA18906.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02723.2.fa to HG02723.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02723.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02723.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/NA18906.2.fa to NA18906.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/NA18906.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/NA18906.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): Starting melting round with a minimum chain length of 512
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/NA18906.2.fa to NA18906.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/NA18906.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/NA18906.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr12): A melting round is destroying 170233 blocks with an average degree of 68.507604 from chains with length less than 2. Total aligned bases lost: 11662255
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02148.2.fa to HG02148.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02148.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02148.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/NA20129.1.fa to NA20129.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/NA20129.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/NA20129.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02818.1.fa to HG02818.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02818.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02818.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/NA20129.1.fa to NA20129.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/NA20129.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/NA20129.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02257.1.fa to HG02257.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02257.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02257.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/NA20129.2.fa to NA20129.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/NA20129.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/NA20129.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/NA20129.2.fa to NA20129.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/NA20129.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/NA20129.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02818.2.fa to HG02818.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02818.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02818.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/NA21309.1.fa to NA21309.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/NA21309.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/NA21309.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02257.2.fa to HG02257.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02257.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02257.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): A melting round is destroying 157328 blocks with an average degree of 68.181690 from chains with length less than 2. Total aligned bases lost: 10726889
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/NA21309.1.fa to NA21309.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/NA21309.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/NA21309.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/NA21309.2.fa to NA21309.2
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/NA21309.2.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/NA21309.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): Starting melting round with a minimum chain length of 512
cactus_consolidated(chr16): A melting round is destroying 254495 blocks with an average degree of 69.961701 from chains with length less than 32. Total aligned bases lost: 90200917
cactus_consolidated(chr17): A melting round is destroying 12275 blocks with an average degree of 40.739470 from chains with length less than 512. Total aligned bases lost: 23766111
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02886.1.fa to HG02886.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02886.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02886.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02486.1.fa to HG02486.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02486.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/CHM13.fa to CHM13
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/CHM13.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/CHM13.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/NA21309.2.fa to NA21309.2
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/NA21309.2.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/NA21309.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02886.2.fa to HG02886.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02886.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02886.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02080.1.fa to HG02080.1
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02080.1.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG02080.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Destroying 0 recoverable blocks
cactus_consolidated(chr19): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/CHM13.fa to CHM13
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/CHM13.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/CHM13.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): Sequence graph statistics after melting:
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02486.2.fa to HG02486.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02486.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): A melting round is destroying 109777 blocks with an average degree of 65.779917 from chains with length less than 2. Total aligned bases lost: 7221122
cactus_consolidated(chr7): Assigning sequence /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/_MINIGRAPH_.fa to _MINIGRAPH_
cactus_consolidated(chr7): Processing file: /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/_MINIGRAPH_.fa
cactus_consolidated(chr7): The file /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03098.1.fa to HG03098.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03098.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03098.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02080.1.fa to HG02080.1
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02080.1.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG02080.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02559.1.fa to HG02559.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02559.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02559.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Constructed the initial flower with 25305 sequences and 93 events with string: ((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chr7): Established the first Flower in the hierarchy, 107 seconds have elapsed
cactus_consolidated(chr3): Assigning sequence /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/_MINIGRAPH_.fa to _MINIGRAPH_
cactus_consolidated(chr3): Processing file: /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/_MINIGRAPH_.fa
cactus_consolidated(chr3): The file /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03098.2.fa to HG03098.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03098.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03098.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02559.2.fa to HG02559.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02559.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02559.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Constructed the initial flower with 19348 sequences and 93 events with string: ((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chr3): Established the first Flower in the hierarchy, 133 seconds have elapsed
cactus_consolidated(chr12): Starting melting round with a minimum chain length of 32
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03453.1.fa to HG03453.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03453.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03453.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02572.1.fa to HG02572.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02572.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02572.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03453.2.fa to HG03453.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03453.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03453.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02572.2.fa to HG02572.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02572.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02572.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): Starting melting round with a minimum chain length of 512
cactus_consolidated(chr15): Starting melting round with a minimum chain length of 32
cactus_consolidated(chr11): Starting melting round with a minimum chain length of 32
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03486.1.fa to HG03486.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03486.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr7): Converted alignment coordinates, 113 seconds have elapsed
cactus_consolidated(chr7): Stripped any unique IDs, 113 seconds have elapsed
cactus_consolidated(chr7): We found a max path distance between ingroups in the tree (((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;) of 0.050000, giving us and min final chain length of: 2048
cactus_consolidated(chr7): Starting annealing round with a minimum chain length of 2048 and an alignment trim of 3
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02622.1.fa to HG02622.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02622.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02622.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr19): There were 122118 blocks in the sequence graph, representing 4828880613 total aligned bases
cactus_consolidated(chr19): Block degree stats: min 1, avg 65.928225, median 91, max 97
cactus_consolidated(chr19): Block support stats: min 0.000000, avg 0.014558, median 0.010989, max 0.500000
cactus_consolidated(chr6): Sequence graph statistics after annealing:
cactus_consolidated(chr13): A melting round is destroying 254189 blocks with an average degree of 70.168512 from chains with length less than 32. Total aligned bases lost: 89115996
cactus_consolidated(chr3): Converted alignment coordinates, 139 seconds have elapsed
cactus_consolidated(chr3): Stripped any unique IDs, 139 seconds have elapsed
cactus_consolidated(chr3): We found a max path distance between ingroups in the tree (((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;) of 0.050000, giving us and min final chain length of: 2048
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03486.2.fa to HG03486.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03486.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr3): Starting annealing round with a minimum chain length of 2048 and an alignment trim of 3
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02622.2.fa to HG02622.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02622.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02622.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr14): A melting round is destroying 7986 blocks with an average degree of 40.690333 from chains with length less than 512. Total aligned bases lost: 17209294
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03492.1.fa to HG03492.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03492.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03492.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02630.1.fa to HG02630.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02630.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02630.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03492.2.fa to HG03492.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03492.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03492.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02630.2.fa to HG02630.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02630.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02630.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): A melting round is destroying 154579 blocks with an average degree of 70.666701 from chains with length less than 2. Total aligned bases lost: 10923588
cactus_consolidated(chr10): A melting round is destroying 16405 blocks with an average degree of 37.833587 from chains with length less than 512. Total aligned bases lost: 29284583
cactus_consolidated(chrX): Sequence graph statistics after annealing:
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03516.1.fa to HG03516.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03516.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03516.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02717.1.fa to HG02717.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02717.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02717.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03516.2.fa to HG03516.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03516.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03516.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02717.2.fa to HG02717.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02717.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02717.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03540.1.fa to HG03540.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03540.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03540.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr13): Starting melting round with a minimum chain length of 512
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02723.1.fa to HG02723.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02723.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02723.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr18): A melting round is destroying 2426 blocks with an average degree of 33.474444 from chains with length less than 2048. Total aligned bases lost: 17449359
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03540.2.fa to HG03540.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03540.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03540.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02723.2.fa to HG02723.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02723.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02723.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr8): There were 758140 blocks in the sequence graph, representing 12988120700 total aligned bases
cactus_consolidated(chr8): Block degree stats: min 1, avg 71.085119, median 84, max 189
cactus_consolidated(chr8): Block support stats: min 0.000000, avg 0.020729, median 0.011628, max 0.500000
cactus_consolidated(chr8): Starting melting round with a minimum chain length of 2
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03579.1.fa to HG03579.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03579.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03579.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): A melting round is destroying 13011 blocks with an average degree of 39.370917 from chains with length less than 512. Total aligned bases lost: 22521843
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02818.1.fa to HG02818.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02818.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02818.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03579.2.fa to HG03579.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03579.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG03579.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02818.2.fa to HG02818.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02818.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02818.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Starting melting round with a minimum chain length of 32
cactus_consolidated(chr19): Attaching the sequence to the cactus root 5531, header chr19 with length 61707364 and 53049199 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chr15): A melting round is destroying 224817 blocks with an average degree of 67.623578 from chains with length less than 32. Total aligned bases lost: 76408228
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/NA18906.1.fa to NA18906.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/NA18906.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/NA18906.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02886.1.fa to HG02886.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02886.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02886.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/NA18906.2.fa to NA18906.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/NA18906.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/NA18906.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02886.2.fa to HG02886.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02886.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02886.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/NA20129.1.fa to NA20129.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/NA20129.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/NA20129.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03098.1.fa to HG03098.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03098.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03098.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/NA20129.2.fa to NA20129.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/NA20129.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/NA20129.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03098.2.fa to HG03098.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03098.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03098.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Ran cactus bar (use poa:1), 348 seconds have elapsed
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/NA21309.1.fa to NA21309.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/NA21309.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/NA21309.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03453.1.fa to HG03453.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03453.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03453.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): There are 9 layers in the flowers hierarchy
cactus_consolidated(chr22): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr22): Chose reference event 2: Anc0
cactus_consolidated(chr22): For flower: 0 we have 0 nodes for: 91296 ends, 6167 chains, 0 stubs and 36964 blocks
cactus_consolidated(chr15): Starting melting round with a minimum chain length of 512
cactus_consolidated(chr12): A melting round is destroying 346927 blocks with an average degree of 71.616078 from chains with length less than 32. Total aligned bases lost: 124269756
cactus_consolidated(chr13): A melting round is destroying 11278 blocks with an average degree of 38.344121 from chains with length less than 512. Total aligned bases lost: 19489676
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/NA21309.2.fa to NA21309.2
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/NA21309.2.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/NA21309.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03453.2.fa to HG03453.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03453.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03453.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Building a matching for 0 stub nodes in the top level problem from 17368 total stubs of which 12334 attached , 91296 total ends, 6167 chains, 36964 blocks 43131 groups and 8684 sequences
cactus_consolidated(chr11): A melting round is destroying 327890 blocks with an average degree of 71.032639 from chains with length less than 32. Total aligned bases lost: 117198967
cactus_consolidated(chr4): Sequence graph statistics after annealing:
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/CHM13.fa to CHM13
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/CHM13.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/CHM13.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03486.1.fa to HG03486.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03486.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03486.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr17): A melting round is destroying 2901 blocks with an average degree of 45.499828 from chains with length less than 2048. Total aligned bases lost: 24637736
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03486.2.fa to HG03486.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03486.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03486.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02080.1.fa to HG02080.1
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02080.1.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG02080.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chr22): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chr22): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chr22): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03492.1.fa to HG03492.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03492.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03492.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Assigning sequence /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/_MINIGRAPH_.fa to _MINIGRAPH_
cactus_consolidated(chr2): Processing file: /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/_MINIGRAPH_.fa
cactus_consolidated(chr2): The file /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): There were 746973 blocks in the sequence graph, representing 11202855481 total aligned bases
cactus_consolidated(chrX): Block degree stats: min 1, avg 57.564925, median 68, max 107
cactus_consolidated(chrX): Block support stats: min 0.000000, avg 0.024762, median 0.014286, max 0.500000
cactus_consolidated(chrX): Starting melting round with a minimum chain length of 2
cactus_consolidated(chr22): In the 1 layer there are 43131 flowers in the flowers hierarchy
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03492.2.fa to HG03492.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03492.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03492.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr2): Constructed the initial flower with 28631 sequences and 93 events with string: ((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chr2): Established the first Flower in the hierarchy, 161 seconds have elapsed
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03516.1.fa to HG03516.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03516.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03516.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): In the 2 layer there are 53951 flowers in the flowers hierarchy
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03516.2.fa to HG03516.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03516.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03516.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr20): Ran cactus caf, 352 seconds have elapsed
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03540.1.fa to HG03540.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03540.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03540.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr15): A melting round is destroying 9843 blocks with an average degree of 28.380169 from chains with length less than 512. Total aligned bases lost: 13686915
cactus_consolidated(chr14): A melting round is destroying 2101 blocks with an average degree of 51.004760 from chains with length less than 2048. Total aligned bases lost: 17821193
cactus_consolidated(chr6): There were 918274 blocks in the sequence graph, representing 15363517101 total aligned bases
cactus_consolidated(chr12): Starting melting round with a minimum chain length of 512
cactus_consolidated(chr6): Block degree stats: min 1, avg 71.107735, median 84, max 94
cactus_consolidated(chr6): Block support stats: min 0.000000, avg 0.019315, median 0.011628, max 0.500000
cactus_consolidated(chr6): Starting melting round with a minimum chain length of 2
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03540.2.fa to HG03540.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03540.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03540.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): Starting melting round with a minimum chain length of 512
cactus_consolidated(chr2): Converted alignment coordinates, 169 seconds have elapsed
cactus_consolidated(chr2): Stripped any unique IDs, 169 seconds have elapsed
cactus_consolidated(chr2): We found a max path distance between ingroups in the tree (((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;) of 0.050000, giving us and min final chain length of: 2048
cactus_consolidated(chr2): Starting annealing round with a minimum chain length of 2048 and an alignment trim of 3
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03579.1.fa to HG03579.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03579.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03579.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr5): Sequence graph statistics after annealing:
cactus_consolidated(chr22): In the 3 layer there are 21078 flowers in the flowers hierarchy
cactus_consolidated(chr8): A melting round is destroying 175835 blocks with an average degree of 68.657127 from chains with length less than 2. Total aligned bases lost: 12072326
cactus_consolidated(chr9): A melting round is destroying 318664 blocks with an average degree of 72.848577 from chains with length less than 32. Total aligned bases lost: 116550144
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03579.2.fa to HG03579.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03579.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG03579.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): In the 4 layer there are 8453 flowers in the flowers hierarchy
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/NA18906.1.fa to NA18906.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/NA18906.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/NA18906.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr22): In the 5 layer there are 1947 flowers in the flowers hierarchy
cactus_consolidated(chr22): In the 6 layer there are 421 flowers in the flowers hierarchy
cactus_consolidated(chr22): In the 7 layer there are 95 flowers in the flowers hierarchy
cactus_consolidated(chr22): In the 8 layer there are 44 flowers in the flowers hierarchy
cactus_consolidated(chr22): Ran cactus make reference, 369 seconds have elapsed
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/NA18906.2.fa to NA18906.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/NA18906.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/NA18906.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/NA20129.1.fa to NA20129.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/NA20129.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/NA20129.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr16): A melting round is destroying 4116 blocks with an average degree of 35.354956 from chains with length less than 2048. Total aligned bases lost: 20293241
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/NA20129.2.fa to NA20129.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/NA20129.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/NA20129.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/NA21309.1.fa to NA21309.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/NA21309.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/NA21309.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/NA21309.2.fa to NA21309.2
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/NA21309.2.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/NA21309.2.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr10): A melting round is destroying 5047 blocks with an average degree of 41.725778 from chains with length less than 2048. Total aligned bases lost: 27900437
cactus_consolidated(chr8): Starting melting round with a minimum chain length of 32
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/CHM13.fa to CHM13
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/CHM13.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/CHM13.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr9): Starting melting round with a minimum chain length of 512
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02080.1.fa to HG02080.1
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02080.1.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG02080.1.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chrX): A melting round is destroying 157620 blocks with an average degree of 55.816946 from chains with length less than 2. Total aligned bases lost: 8797867
cactus_consolidated(chr1): Assigning sequence /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/_MINIGRAPH_.fa to _MINIGRAPH_
cactus_consolidated(chr1): Processing file: /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/_MINIGRAPH_.fa
cactus_consolidated(chr1): The file /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/_MINIGRAPH_.fa is specified incomplete, the sequences will not be attached
cactus_consolidated(chr11): A melting round is destroying 12327 blocks with an average degree of 38.467348 from chains with length less than 512. Total aligned bases lost: 25540739
cactus_consolidated(chr1): Constructed the initial flower with 32277 sequences and 93 events with string: ((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;
cactus_consolidated(chr1): Established the first Flower in the hierarchy, 158 seconds have elapsed
cactus_consolidated(chr12): A melting round is destroying 13547 blocks with an average degree of 40.511257 from chains with length less than 512. Total aligned bases lost: 26569679
cactus_consolidated(chr7): Sequence graph statistics after annealing:
cactus_consolidated(chrX): Starting melting round with a minimum chain length of 32
cactus_consolidated(chr15): A melting round is destroying 2417 blocks with an average degree of 32.124121 from chains with length less than 2048. Total aligned bases lost: 14340919
cactus_consolidated(chr18): Destroying 2393 recoverable blocks
cactus_consolidated(chr18): The blocks covered 239607 columns for a total of 16719613 aligned bases
cactus_consolidated(chr13): A melting round is destroying 1473 blocks with an average degree of 45.374067 from chains with length less than 2048. Total aligned bases lost: 12777710
cactus_consolidated(chr1): Converted alignment coordinates, 166 seconds have elapsed
cactus_consolidated(chr1): Stripped any unique IDs, 166 seconds have elapsed
cactus_consolidated(chr1): We found a max path distance between ingroups in the tree (((GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1:0.025,HG03098.2:0.025,HG03453.1:0.025,HG03453.2:0.025,HG03486.1:0.025,HG03486.2:0.025,HG03492.1:0.025,HG03492.2:0.025,HG03516.1:0.025,HG03516.2:0.025,HG03540.1:0.025,HG03540.2:0.025,HG03579.1:0.025,HG03579.2:0.025,NA18906.1:0.025,NA18906.2:0.025,NA20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0:9.22337e+18)ROOT:9.22337e+18;) of 0.050000, giving us and min final chain length of: 2048
cactus_consolidated(chr1): Starting annealing round with a minimum chain length of 2048 and an alignment trim of 3
cactus_consolidated(chr3): Sequence graph statistics after annealing:
cactus_consolidated(chr4): There were 1003632 blocks in the sequence graph, representing 17047143438 total aligned bases
cactus_consolidated(chr4): Block degree stats: min 1, avg 70.125513, median 84, max 104
cactus_consolidated(chr4): Block support stats: min 0.000000, avg 0.021786, median 0.011628, max 0.500000
cactus_consolidated(chr4): Starting melting round with a minimum chain length of 2
cactus_consolidated(chr20): Ran extended flowers ready for bar, 387 seconds have elapsed
cactus_consolidated(chr9): A melting round is destroying 11580 blocks with an average degree of 41.987824 from chains with length less than 512. Total aligned bases lost: 24379532
cactus_consolidated(chr6): A melting round is destroying 216084 blocks with an average degree of 68.158804 from chains with length less than 2. Total aligned bases lost: 14728027
cactus_consolidated(chr5): There were 928520 blocks in the sequence graph, representing 16121276700 total aligned bases
cactus_consolidated(chr5): Block degree stats: min 1, avg 69.970266, median 83, max 115
cactus_consolidated(chr5): Block support stats: min 0.000000, avg 0.021795, median 0.011628, max 0.500000
cactus_consolidated(chr5): Starting melting round with a minimum chain length of 2
cactus_consolidated(chr8): A melting round is destroying 358504 blocks with an average degree of 71.422115 from chains with length less than 32. Total aligned bases lost: 128045789
cactus_consolidated(chr18): Destroying 0 recoverable blocks
cactus_consolidated(chr18): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chr18): Sequence graph statistics after melting:
cactus_consolidated(chr6): Starting melting round with a minimum chain length of 32
cactus_consolidated(chrX): A melting round is destroying 363436 blocks with an average degree of 57.971241 from chains with length less than 32. Total aligned bases lost: 104305158
cactus_consolidated(chr18): There were 100558 blocks in the sequence graph, representing 6626822389 total aligned bases
cactus_consolidated(chr18): Block degree stats: min 1, avg 68.713459, median 91, max 113
cactus_consolidated(chr18): Block support stats: min 0.000000, avg 0.010425, median 0.010989, max 0.500000
cactus_consolidated(chr8): Starting melting round with a minimum chain length of 512
cactus_consolidated(chr7): There were 937499 blocks in the sequence graph, representing 14194123012 total aligned bases
cactus_consolidated(chr7): Block degree stats: min 1, avg 68.297063, median 82, max 141
cactus_consolidated(chr7): Block support stats: min 0.000000, avg 0.023146, median 0.011765, max 0.500000
cactus_consolidated(chr7): Starting melting round with a minimum chain length of 2
cactus_consolidated(chr17): Destroying 3329 recoverable blocks
cactus_consolidated(chr17): The blocks covered 499699 columns for a total of 37814019 aligned bases
cactus_consolidated(chrX): Starting melting round with a minimum chain length of 512
cactus_consolidated(chr18): Attaching the sequence to the cactus root 3287, header chr18 with length 80542538 and 72585256 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chr14): Destroying 3737 recoverable blocks
cactus_consolidated(chr14): The blocks covered 514180 columns for a total of 39466776 aligned bases
cactus_consolidated(chr11): A melting round is destroying 2783 blocks with an average degree of 52.055336 from chains with length less than 2048. Total aligned bases lost: 29870329
cactus_consolidated(chr3): There were 967594 blocks in the sequence graph, representing 17775207479 total aligned bases
cactus_consolidated(chr3): Block degree stats: min 1, avg 71.826584, median 84, max 96
cactus_consolidated(chr3): Block support stats: min 0.000000, avg 0.019388, median 0.011628, max 0.500000
cactus_consolidated(chr3): Starting melting round with a minimum chain length of 2
cactus_consolidated(chr12): A melting round is destroying 2452 blocks with an average degree of 48.904976 from chains with length less than 2048. Total aligned bases lost: 25726156
cactus_consolidated(chr5): A melting round is destroying 208743 blocks with an average degree of 68.349904 from chains with length less than 2. Total aligned bases lost: 14267564
cactus_consolidated(chr16): Destroying 4045 recoverable blocks
cactus_consolidated(chr16): The blocks covered 761619 columns for a total of 61517594 aligned bases
cactus_consolidated(chr9): A melting round is destroying 2773 blocks with an average degree of 46.957447 from chains with length less than 2048. Total aligned bases lost: 25886837
cactus_consolidated(chr4): A melting round is destroying 226509 blocks with an average degree of 67.633917 from chains with length less than 2. Total aligned bases lost: 15319691
cactus_consolidated(chr8): A melting round is destroying 13852 blocks with an average degree of 39.272307 from chains with length less than 512. Total aligned bases lost: 28188489
cactus_consolidated(chrX): A melting round is destroying 15041 blocks with an average degree of 32.810252 from chains with length less than 512. Total aligned bases lost: 21745201
cactus_consolidated(chr6): A melting round is destroying 435130 blocks with an average degree of 71.181725 from chains with length less than 32. Total aligned bases lost: 154424223
cactus_consolidated(chr17): Destroying 0 recoverable blocks
cactus_consolidated(chr17): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chr17): Sequence graph statistics after melting:
cactus_consolidated(chr2): Sequence graph statistics after annealing:
cactus_consolidated(chr15): Destroying 1336 recoverable blocks
cactus_consolidated(chr15): The blocks covered 298412 columns for a total of 19246385 aligned bases
cactus_consolidated(chr5): Starting melting round with a minimum chain length of 32
cactus_consolidated(chr14): Destroying 0 recoverable blocks
cactus_consolidated(chr14): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chr14): Sequence graph statistics after melting:
cactus_consolidated(chr7): A melting round is destroying 212544 blocks with an average degree of 66.792231 from chains with length less than 2. Total aligned bases lost: 14196288
cactus_consolidated(chr17): There were 128188 blocks in the sequence graph, representing 6923465391 total aligned bases
cactus_consolidated(chr17): Block degree stats: min 1, avg 69.109839, median 91, max 167
cactus_consolidated(chr17): Block support stats: min 0.000000, avg 0.010614, median 0.010989, max 0.500000
cactus_consolidated(chr4): Starting melting round with a minimum chain length of 32
cactus_consolidated(chr13): Destroying 3312 recoverable blocks
cactus_consolidated(chr13): The blocks covered 289513 columns for a total of 21816232 aligned bases
cactus_consolidated(chr14): There were 114255 blocks in the sequence graph, representing 7762947119 total aligned bases
cactus_consolidated(chr14): Block degree stats: min 1, avg 75.810004, median 91, max 280
cactus_consolidated(chr14): Block support stats: min 0.000000, avg 0.011090, median 0.010989, max 0.500000
cactus_consolidated(chr16): Destroying 0 recoverable blocks
cactus_consolidated(chr16): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chr16): Sequence graph statistics after melting:
cactus_consolidated(chr6): Starting melting round with a minimum chain length of 512
cactus_consolidated(chr3): A melting round is destroying 223734 blocks with an average degree of 68.882977 from chains with length less than 2. Total aligned bases lost: 15411464
cactus_consolidated(chr7): Starting melting round with a minimum chain length of 32
cactus_consolidated(chr15): Destroying 0 recoverable blocks
cactus_consolidated(chr15): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chr15): Sequence graph statistics after melting:
cactus_consolidated(chr1): Sequence graph statistics after annealing:
cactus_consolidated(chr16): There were 123256 blocks in the sequence graph, representing 6961797895 total aligned bases
cactus_consolidated(chr16): Block degree stats: min 1, avg 68.729668, median 91, max 169
cactus_consolidated(chr16): Block support stats: min 0.000000, avg 0.012042, median 0.010989, max 0.500000
cactus_consolidated(chr19): Ran cactus caf, 462 seconds have elapsed
cactus_consolidated(chr17): Attaching the sequence to the cactus root 4151, header chr17 with length 84276897 and 76025957 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chr15): There were 111833 blocks in the sequence graph, representing 7096422155 total aligned bases
cactus_consolidated(chr15): Block degree stats: min 1, avg 70.167965, median 91, max 95
cactus_consolidated(chr15): Block support stats: min 0.000000, avg 0.013032, median 0.010989, max 0.500000
cactus_consolidated(chr14): Attaching the sequence to the cactus root 95, header chr14 with length 107043718 and 85499288 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrX): A melting round is destroying 4017 blocks with an average degree of 38.605427 from chains with length less than 2048. Total aligned bases lost: 20856092
cactus_consolidated(chr10): Destroying 3860 recoverable blocks
cactus_consolidated(chr10): The blocks covered 342956 columns for a total of 26964301 aligned bases
cactus_consolidated(chr3): Starting melting round with a minimum chain length of 32
cactus_consolidated(chr13): Destroying 0 recoverable blocks
cactus_consolidated(chr13): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chr13): Sequence graph statistics after melting:
cactus_consolidated(chr5): A melting round is destroying 439901 blocks with an average degree of 70.412477 from chains with length less than 32. Total aligned bases lost: 155427235
cactus_consolidated(chr16): Attaching the sequence to the cactus root 4961, header JAGYVU010000243.1 with length 120038 and 6116 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chr16): Attaching the sequence to the cactus root 5387, header chr16 with length 96330374 and 76357772 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chr6): A melting round is destroying 16065 blocks with an average degree of 39.606785 from chains with length less than 512. Total aligned bases lost: 31281571
cactus_consolidated(chr8): A melting round is destroying 2463 blocks with an average degree of 43.805928 from chains with length less than 2048. Total aligned bases lost: 28244158
cactus_consolidated(chr15): Attaching the sequence to the cactus root 95, header chr15 with length 101991189 and 82359047 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chr13): There were 127109 blocks in the sequence graph, representing 8470490301 total aligned bases
cactus_consolidated(chr13): Block degree stats: min 1, avg 70.933435, median 91, max 114
cactus_consolidated(chr13): Block support stats: min 0.000000, avg 0.010164, median 0.010989, max 0.500000
cactus_consolidated(chr4): A melting round is destroying 478819 blocks with an average degree of 70.211748 from chains with length less than 32. Total aligned bases lost: 168428571
cactus_consolidated(chr2): There were 1253465 blocks in the sequence graph, representing 21627427048 total aligned bases
cactus_consolidated(chr2): Block degree stats: min 1, avg 70.033842, median 84, max 113
cactus_consolidated(chr2): Block support stats: min 0.000000, avg 0.021406, median 0.011628, max 0.500000
cactus_consolidated(chr2): Starting melting round with a minimum chain length of 2
cactus_consolidated(chr5): Starting melting round with a minimum chain length of 512
cactus_consolidated(chr7): A melting round is destroying 438401 blocks with an average degree of 69.259580 from chains with length less than 32. Total aligned bases lost: 152992784
cactus_consolidated(chr22): Ran cactus make reference bottom up coordinates, 518 seconds have elapsed
cactus_consolidated(chr22): Ran cactus make reference top down coordinates, 518 seconds have elapsed
cactus_consolidated(chr13): Attaching the sequence to the cactus root 95, header chr13 with length 114364328 and 95468212 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chr4): Starting melting round with a minimum chain length of 512
cactus_consolidated(chr19): Ran extended flowers ready for bar, 508 seconds have elapsed
cactus_consolidated(chr10): Destroying 0 recoverable blocks
cactus_consolidated(chr10): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chr10): Sequence graph statistics after melting:
cactus_consolidated(chr7): Starting melting round with a minimum chain length of 512
cactus_consolidated(chr3): A melting round is destroying 460470 blocks with an average degree of 71.668838 from chains with length less than 32. Total aligned bases lost: 164319598
cactus_consolidated(chr1): There were 1275880 blocks in the sequence graph, representing 20555852871 total aligned bases
cactus_consolidated(chr1): Block degree stats: min 1, avg 68.734669, median 83, max 124
cactus_consolidated(chr1): Block support stats: min 0.000000, avg 0.023449, median 0.011765, max 0.500000
cactus_consolidated(chr1): Starting melting round with a minimum chain length of 2
cactus_consolidated(chr11): Destroying 2552 recoverable blocks
cactus_consolidated(chr11): The blocks covered 334362 columns for a total of 26008490 aligned bases
cactus_consolidated(chr22): Ran cactus to hal stage, 536 seconds have elapsed
cactus_consolidated(chr5): A melting round is destroying 16573 blocks with an average degree of 36.319435 from chains with length less than 512. Total aligned bases lost: 29792015
cactus_consolidated(chr10): There were 179703 blocks in the sequence graph, representing 11577225725 total aligned bases
cactus_consolidated(chr10): Block degree stats: min 1, avg 70.224793, median 91, max 108
cactus_consolidated(chr10): Block support stats: min 0.000000, avg 0.010881, median 0.010989, max 0.500000
cactus_consolidated(chr9): Destroying 2975 recoverable blocks
cactus_consolidated(chr9): The blocks covered 359363 columns for a total of 32476605 aligned bases
cactus_consolidated(chr22): Dumped sequences for hal file, 545 seconds have elapsed
cactus_consolidated(chr12): Destroying 2256 recoverable blocks
cactus_consolidated(chr12): The blocks covered 226541 columns for a total of 20064664 aligned bases
cactus_consolidated(chr22): Dumped reference sequences, 546 seconds have elapsed
cactus_consolidated(chr22): Cactus consolidated is done!, 546 seconds have elapsed
cactus_consolidated(chr3): Starting melting round with a minimum chain length of 512
2023-07-05 13:56:43.479442: Successfully ran cactus_consolidated(chr22): "cactus_consolidated --sequences 'GRCh38 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/GRCh38.fa HG00438.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00438.1.fa HG00438.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00438.2.fa HG00621.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00621.1.fa HG00621.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00621.2.fa HG00673.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00673.1.fa HG00673.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00673.2.fa HG00733.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00733.1.fa HG00733.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00733.2.fa HG00735.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00735.1.fa HG00735.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00735.2.fa HG00741.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00741.1.fa HG00741.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/HG00741.2.fa HG01071.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1018/d328/tmpt9570j3p/H <...> 250f1999ba98b3759d207/1018/d328/tmpt9570j3p/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 546.7167 seconds and 34.7 Gi memory with job-memory 224.5 Gi. Percent utilization: 15.47
cactus_consolidated(chr18): Ran cactus caf, 401 seconds have elapsed
cactus_consolidated(chr4): A melting round is destroying 17314 blocks with an average degree of 36.860518 from chains with length less than 512. Total aligned bases lost: 32134284
Got message from job at time 07-05-2023 13:56:51: Ran cactus consolidated okay
cactus_consolidated(chr7): A melting round is destroying 21398 blocks with an average degree of 37.049678 from chains with length less than 512. Total aligned bases lost: 38355741
cactus_consolidated(chr6): A melting round is destroying 3816 blocks with an average degree of 44.914832 from chains with length less than 2048. Total aligned bases lost: 30407176
Issued job 'export_hal' kind-export_hal/instance-g7yg6btk v1 with job batch system ID: 2709 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr2): A melting round is destroying 281835 blocks with an average degree of 67.761201 from chains with length less than 2. Total aligned bases lost: 19097478
Issued job 'export_hal' kind-export_hal/instance-q9mrybgs v1 with job batch system ID: 2710 and disk: 12.6 Gi, memory: 20.9 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr10): Attaching the sequence to the cactus root 104855, header s102276 with length 153907 and 2 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chr10): Attaching the sequence to the cactus root 143, header JAHBCA010000002.1 with length 135796793 and 126777357 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chrX): Destroying 11466 recoverable blocks
cactus_consolidated(chrX): The blocks covered 1445136 columns for a total of 97811313 aligned bases
cactus_consolidated(chr11): Destroying 0 recoverable blocks
cactus_consolidated(chr11): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chr11): Sequence graph statistics after melting:
cactus_consolidated(chr3): A melting round is destroying 14388 blocks with an average degree of 36.947734 from chains with length less than 512. Total aligned bases lost: 28712636
cactus_consolidated(chr9): Destroying 7 recoverable blocks
cactus_consolidated(chr9): The blocks covered 91 columns for a total of 16835 aligned bases
cactus_consolidated(chr2): Starting melting round with a minimum chain length of 32
cactus_consolidated(chr1): A melting round is destroying 286097 blocks with an average degree of 67.462497 from chains with length less than 2. Total aligned bases lost: 19300818
cactus_consolidated(chr12): Destroying 0 recoverable blocks
cactus_consolidated(chr12): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chr12): Sequence graph statistics after melting:
cactus_consolidated(chr11): There were 164354 blocks in the sequence graph, representing 11603436231 total aligned bases
cactus_consolidated(chr11): Block degree stats: min 1, avg 73.519202, median 91, max 103
cactus_consolidated(chr11): Block support stats: min 0.000000, avg 0.010018, median 0.010989, max 0.500000
cactus_consolidated(chr18): Ran extended flowers ready for bar, 439 seconds have elapsed
cactus_consolidated(chr12): There were 169928 blocks in the sequence graph, representing 11545052304 total aligned bases
cactus_consolidated(chr12): Block degree stats: min 1, avg 73.961342, median 91, max 94
cactus_consolidated(chr12): Block support stats: min 0.000000, avg 0.009975, median 0.010989, max 0.500000
cactus_consolidated(chrX): Destroying 0 recoverable blocks
cactus_consolidated(chrX): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chrX): Sequence graph statistics after melting:
cactus_consolidated(chr5): A melting round is destroying 4221 blocks with an average degree of 35.303009 from chains with length less than 2048. Total aligned bases lost: 29501561
cactus_consolidated(chr1): Starting melting round with a minimum chain length of 32
2023-07-05 13:57:38.054147: Running the command: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/83b1/35d6/tmp8gwm16c7/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/83b1/35d6/tmp8gwm16c7/Anc0.hal.fa (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098 <...> A20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/9eeeec3d467250f1999ba98b3759d207/83b1/35d6/tmp8gwm16c7/Anc0.hal --inMemory"
cactus_consolidated(chr8): Destroying 2715 recoverable blocks
cactus_consolidated(chr8): The blocks covered 401787 columns for a total of 28234920 aligned bases
cactus_consolidated(chr11): Attaching the sequence to the cactus root 3563, header chr11 with length 135127769 and 127521125 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chr9): Destroying 0 recoverable blocks
cactus_consolidated(chr9): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chrX): There were 163893 blocks in the sequence graph, representing 10838007572 total aligned bases
cactus_consolidated(chrX): Block degree stats: min 1, avg 57.276461, median 74, max 107
cactus_consolidated(chrX): Block support stats: min 0.000000, avg 0.012069, median 0.013514, max 0.500000
cactus_consolidated(chr9): Sequence graph statistics after melting:
cactus_consolidated(chr7): A melting round is destroying 5655 blocks with an average degree of 34.015208 from chains with length less than 2048. Total aligned bases lost: 39420445
cactus_consolidated(chr4): A melting round is destroying 4348 blocks with an average degree of 35.760350 from chains with length less than 2048. Total aligned bases lost: 29332369
cactus_consolidated(chr12): Attaching the sequence to the cactus root 4049, header chr12 with length 133324548 and 126571488 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chr9): There were 154672 blocks in the sequence graph, representing 10182903788 total aligned bases
cactus_consolidated(chr9): Block degree stats: min 1, avg 76.244763, median 91, max 200
cactus_consolidated(chr9): Block support stats: min 0.000000, avg 0.010803, median 0.010989, max 0.500000
cactus_consolidated(chr2): A melting round is destroying 596362 blocks with an average degree of 70.311019 from chains with length less than 32. Total aligned bases lost: 211725130
cactus_consolidated(chr15): Ran cactus caf, 442 seconds have elapsed
cactus_consolidated(chr17): Ran cactus caf, 512 seconds have elapsed
cactus_consolidated(chrX): Attaching the sequence to the cactus root 95, header chrX with length 156040895 and 150431846 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chr14): Ran cactus caf, 496 seconds have elapsed
cactus_consolidated(chr20): Ran cactus bar (use poa:1), 626 seconds have elapsed
cactus_consolidated(chr20): There are 10 layers in the flowers hierarchy
cactus_consolidated(chr20): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr20): Chose reference event 2: Anc0
cactus_consolidated(chr20): For flower: 0 we have 0 nodes for: 153250 ends, 10567 chains, 0 stubs and 62323 blocks
cactus_consolidated(chr20): Building a matching for 0 stub nodes in the top level problem from 28604 total stubs of which 21134 attached , 153250 total ends, 10567 chains, 62323 blocks 72890 groups and 14302 sequences
cactus_consolidated(chr16): Ran cactus caf, 497 seconds have elapsed
cactus_consolidated(chr20): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chr20): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chr20): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chr20): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
cactus_consolidated(chr3): A melting round is destroying 3603 blocks with an average degree of 37.645573 from chains with length less than 2048. Total aligned bases lost: 33035459
cactus_consolidated(chr8): Destroying 0 recoverable blocks
cactus_consolidated(chr8): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chr8): Sequence graph statistics after melting:
cactus_consolidated(chr9): Attaching the sequence to the cactus root 4073, header chr9 with length 150617247 and 113565477 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chr20): In the 1 layer there are 72890 flowers in the flowers hierarchy
cactus_consolidated(chr20): In the 2 layer there are 79957 flowers in the flowers hierarchy
cactus_consolidated(chr1): A melting round is destroying 598154 blocks with an average degree of 69.529410 from chains with length less than 32. Total aligned bases lost: 209200318
cactus_consolidated(chr2): Starting melting round with a minimum chain length of 512
cactus_consolidated(chr8): There were 179642 blocks in the sequence graph, representing 12621586872 total aligned bases
cactus_consolidated(chr8): Block degree stats: min 1, avg 72.825369, median 91, max 189
cactus_consolidated(chr8): Block support stats: min 0.000000, avg 0.010655, median 0.010989, max 0.500000
cactus_consolidated(chr20): In the 3 layer there are 19226 flowers in the flowers hierarchy
cactus_consolidated(chr20): In the 4 layer there are 8158 flowers in the flowers hierarchy
cactus_consolidated(chr20): In the 5 layer there are 2478 flowers in the flowers hierarchy
cactus_consolidated(chr20): In the 6 layer there are 564 flowers in the flowers hierarchy
cactus_consolidated(chr20): In the 7 layer there are 122 flowers in the flowers hierarchy
cactus_consolidated(chr20): In the 8 layer there are 13 flowers in the flowers hierarchy
cactus_consolidated(chr20): In the 9 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr20): Ran cactus make reference, 657 seconds have elapsed
cactus_consolidated(chr15): Ran extended flowers ready for bar, 485 seconds have elapsed
cactus_consolidated(chr13): Ran cactus caf, 530 seconds have elapsed
cactus_consolidated(chr1): Starting melting round with a minimum chain length of 512
cactus_consolidated(chr17): Ran extended flowers ready for bar, 562 seconds have elapsed
cactus_consolidated(chr14): Ran extended flowers ready for bar, 545 seconds have elapsed
cactus_consolidated(chr16): Ran extended flowers ready for bar, 545 seconds have elapsed
cactus_consolidated(chr8): Attaching the sequence to the cactus root 443, header JAHALY010000019.1 with length 146623042 and 137082243 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chr6): Destroying 3204 recoverable blocks
cactus_consolidated(chr6): The blocks covered 339331 columns for a total of 28807248 aligned bases
cactus_consolidated(chr2): A melting round is destroying 25101 blocks with an average degree of 35.393889 from chains with length less than 512. Total aligned bases lost: 42100051
cactus_consolidated(chr1): A melting round is destroying 25692 blocks with an average degree of 35.145026 from chains with length less than 512. Total aligned bases lost: 44479845
cactus_consolidated(chr19): Ran cactus bar (use poa:1), 707 seconds have elapsed
cactus_consolidated(chr19): There are 11 layers in the flowers hierarchy
cactus_consolidated(chr19): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr19): Chose reference event 2: Anc0
cactus_consolidated(chr19): For flower: 0 we have 0 nodes for: 196798 ends, 9733 chains, 0 stubs and 83796 blocks
cactus_consolidated(chr13): Ran extended flowers ready for bar, 581 seconds have elapsed
cactus_consolidated(chr19): Building a matching for 0 stub nodes in the top level problem from 29206 total stubs of which 19466 attached , 196798 total ends, 9733 chains, 83796 blocks 93529 groups and 14603 sequences
cactus_consolidated(chr5): Destroying 3550 recoverable blocks
cactus_consolidated(chr5): The blocks covered 592940 columns for a total of 41346390 aligned bases
cactus_consolidated(chr6): Destroying 0 recoverable blocks
cactus_consolidated(chr6): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chr6): Sequence graph statistics after melting:
cactus_consolidated(chr19): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chr19): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chr19): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chr19): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
cactus_consolidated(chr19): In the 1 layer there are 93529 flowers in the flowers hierarchy
cactus_consolidated(chr19): In the 2 layer there are 111559 flowers in the flowers hierarchy
cactus_consolidated(chr7): Destroying 3038 recoverable blocks
cactus_consolidated(chr7): The blocks covered 518839 columns for a total of 38059664 aligned bases
cactus_consolidated(chr6): There were 213992 blocks in the sequence graph, representing 14932627296 total aligned bases
cactus_consolidated(chr6): Block degree stats: min 1, avg 73.877668, median 91, max 94
cactus_consolidated(chr6): Block support stats: min 0.000000, avg 0.009615, median 0.010989, max 0.500000
cactus_consolidated(chr19): In the 3 layer there are 25366 flowers in the flowers hierarchy
2023-07-05 14:00:17.602210: Successfully ran: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/83b1/35d6/tmp8gwm16c7/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/83b1/35d6/tmp8gwm16c7/Anc0.hal.fa '(GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1 <...> _MINIGRAPH_:0.025)Anc0;' /data/tmp/9eeeec3d467250f1999ba98b3759d207/83b1/35d6/tmp8gwm16c7/Anc0.hal --inMemory" in 159.5471 seconds and 2.8 Gi memory with job-memory 20.9 Gi. Percent utilization: 13.43
2023-07-05 14:00:17.603174: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/83b1/35d6/tmp8gwm16c7/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
2023-07-05 14:00:17.609680: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/83b1/35d6/tmp8gwm16c7/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.0058 seconds and 5.9 Mi memory
2023-07-05 14:00:17.613666: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/83b1/35d6/tmp8gwm16c7/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 14:00:17.617145: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/83b1/35d6/tmp8gwm16c7/Anc0.hal CACTUS_CONFIG 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 <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0028 seconds and 5.9 Mi memory
2023-07-05 14:00:17.617324: Running the command: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/83b1/35d6/tmp8gwm16c7/Anc0.hal GRCh38"
2023-07-05 14:00:17.645653: Successfully ran: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/83b1/35d6/tmp8gwm16c7/Anc0.hal GRCh38" in 0.0278 seconds and 8.1 Mi memory with job-memory 20.9 Gi. Percent utilization: 0.03795
cactus_consolidated(chr19): In the 4 layer there are 9389 flowers in the flowers hierarchy
cactus_consolidated(chr19): In the 5 layer there are 2322 flowers in the flowers hierarchy
cactus_consolidated(chr19): In the 6 layer there are 626 flowers in the flowers hierarchy
cactus_consolidated(chr19): In the 7 layer there are 184 flowers in the flowers hierarchy
cactus_consolidated(chr19): In the 8 layer there are 42 flowers in the flowers hierarchy
cactus_consolidated(chr19): In the 9 layer there are 61 flowers in the flowers hierarchy
cactus_consolidated(chr19): In the 10 layer there are 50 flowers in the flowers hierarchy
cactus_consolidated(chr19): Ran cactus make reference, 748 seconds have elapsed
Issued job 'export_vg' kind-export_vg/instance-_hzatjuq v1 with job batch system ID: 2711 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_vg' kind-export_vg/instance-w6ckxxyc v1 with job batch system ID: 2712 and disk: 3.2 Gi, memory: 64.0 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr4): Destroying 4160 recoverable blocks
cactus_consolidated(chr4): The blocks covered 406271 columns for a total of 30098890 aligned bases
cactus_consolidated(chr15): Ran cactus bar (use poa:1), 596 seconds have elapsed
cactus_consolidated(chr5): Destroying 0 recoverable blocks
cactus_consolidated(chr5): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chr15): There are 10 layers in the flowers hierarchy
cactus_consolidated(chr15): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr15): Chose reference event 2: Anc0
cactus_consolidated(chr15): For flower: 0 we have 0 nodes for: 173624 ends, 7593 chains, 0 stubs and 76067 blocks
cactus_consolidated(chr5): Sequence graph statistics after melting:
cactus_consolidated(chr15): Building a matching for 0 stub nodes in the top level problem from 21490 total stubs of which 15186 attached , 173624 total ends, 7593 chains, 76067 blocks 83660 groups and 10745 sequences
cactus_consolidated(chr2): A melting round is destroying 5407 blocks with an average degree of 35.779545 from chains with length less than 2048. Total aligned bases lost: 38213619
cactus_consolidated(chr10): Ran cactus caf, 749 seconds have elapsed
cactus_consolidated(chr6): Attaching the sequence to the cactus root 5051, header chr6 with length 172126628 and 163825370 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chr3): Destroying 2522 recoverable blocks
cactus_consolidated(chr3): The blocks covered 263691 columns for a total of 21570243 aligned bases
cactus_consolidated(chr21): Ran cactus bar (use poa:1), 770 seconds have elapsed
cactus_consolidated(chr21): There are 11 layers in the flowers hierarchy
cactus_consolidated(chr21): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr21): Chose reference event 2: Anc0
cactus_consolidated(chr21): For flower: 0 we have 0 nodes for: 94472 ends, 5169 chains, 0 stubs and 39365 blocks
cactus_consolidated(chr21): Building a matching for 0 stub nodes in the top level problem from 15742 total stubs of which 10338 attached , 94472 total ends, 5169 chains, 39365 blocks 44534 groups and 7871 sequences
cactus_consolidated(chr15): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chr15): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chr15): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chr15): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
cactus_consolidated(chrX): Ran cactus caf, 594 seconds have elapsed
cactus_consolidated(chr21): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chr21): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chr21): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chr21): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
cactus_consolidated(chr7): Destroying 0 recoverable blocks
cactus_consolidated(chr7): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chr7): Sequence graph statistics after melting:
cactus_consolidated(chr1): A melting round is destroying 8419 blocks with an average degree of 34.228887 from chains with length less than 2048. Total aligned bases lost: 54898840
cactus_consolidated(chr15): In the 1 layer there are 83660 flowers in the flowers hierarchy
cactus_consolidated(chr21): In the 1 layer there are 44534 flowers in the flowers hierarchy
cactus_consolidated(chr21): In the 2 layer there are 51578 flowers in the flowers hierarchy
cactus_consolidated(chr15): In the 2 layer there are 100645 flowers in the flowers hierarchy
cactus_consolidated(chr5): There were 223261 blocks in the sequence graph, representing 15678324244 total aligned bases
cactus_consolidated(chr5): Block degree stats: min 1, avg 71.232723, median 91, max 115
cactus_consolidated(chr5): Block support stats: min 0.000000, avg 0.013574, median 0.010989, max 0.500000
2023-07-05 14:01:00.608702: Running the command: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/00a8/5bc3/tmp5wxmtmcp/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
cactus_consolidated(chr18): Ran cactus bar (use poa:1), 663 seconds have elapsed
cactus_consolidated(chr18): There are 13 layers in the flowers hierarchy
cactus_consolidated(chr18): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr18): Chose reference event 2: Anc0
cactus_consolidated(chr18): For flower: 0 we have 0 nodes for: 172174 ends, 8469 chains, 0 stubs and 74159 blocks
cactus_consolidated(chr18): Building a matching for 0 stub nodes in the top level problem from 23856 total stubs of which 16938 attached , 172174 total ends, 8469 chains, 74159 blocks 82628 groups and 11928 sequences
cactus_consolidated(chr21): In the 3 layer there are 19362 flowers in the flowers hierarchy
cactus_consolidated(chr7): There were 224164 blocks in the sequence graph, representing 13743726153 total aligned bases
cactus_consolidated(chr7): Block degree stats: min 1, avg 68.639880, median 91, max 99
cactus_consolidated(chr7): Block support stats: min 0.000000, avg 0.011874, median 0.010989, max 0.500000
cactus_consolidated(chr15): In the 3 layer there are 24577 flowers in the flowers hierarchy
cactus_consolidated(chr18): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chr18): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chr18): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chr18): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
cactus_consolidated(chr21): In the 4 layer there are 8267 flowers in the flowers hierarchy
cactus_consolidated(chr11): Ran cactus caf, 712 seconds have elapsed
cactus_consolidated(chr15): In the 4 layer there are 7673 flowers in the flowers hierarchy
cactus_consolidated(chr15): In the 5 layer there are 1977 flowers in the flowers hierarchy
cactus_consolidated(chr15): In the 6 layer there are 486 flowers in the flowers hierarchy
cactus_consolidated(chr15): In the 7 layer there are 122 flowers in the flowers hierarchy
cactus_consolidated(chr15): In the 8 layer there are 20 flowers in the flowers hierarchy
cactus_consolidated(chr15): In the 9 layer there are 5 flowers in the flowers hierarchy
cactus_consolidated(chr15): Ran cactus make reference, 638 seconds have elapsed
cactus_consolidated(chr21): In the 5 layer there are 2611 flowers in the flowers hierarchy
cactus_consolidated(chr21): In the 6 layer there are 769 flowers in the flowers hierarchy
cactus_consolidated(chr21): In the 7 layer there are 172 flowers in the flowers hierarchy
cactus_consolidated(chr21): In the 8 layer there are 75 flowers in the flowers hierarchy
cactus_consolidated(chr21): In the 9 layer there are 15 flowers in the flowers hierarchy
cactus_consolidated(chr21): In the 10 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr21): Ran cactus make reference, 804 seconds have elapsed
cactus_consolidated(chr4): Destroying 0 recoverable blocks
cactus_consolidated(chr4): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chr18): In the 1 layer there are 82628 flowers in the flowers hierarchy
cactus_consolidated(chr4): Sequence graph statistics after melting:
cactus_consolidated(chr18): In the 2 layer there are 89422 flowers in the flowers hierarchy
cactus_consolidated(chr7): Pinch graph component with 698 nodes and 748 edges is being split up by breaking 1 edges to reduce size to less than 650 max, but found 0 pointless edges
cactus_consolidated(chr5): Attaching the sequence to the cactus root 5495, header chr5 with length 182045439 and 172369228 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chr17): Ran cactus bar (use poa:1), 723 seconds have elapsed
cactus_consolidated(chr17): There are 10 layers in the flowers hierarchy
cactus_consolidated(chr17): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr17): Chose reference event 2: Anc0
cactus_consolidated(chr17): For flower: 0 we have 0 nodes for: 203264 ends, 10098 chains, 0 stubs and 87458 blocks
cactus_consolidated(chr18): In the 3 layer there are 13468 flowers in the flowers hierarchy
cactus_consolidated(chr3): Destroying 0 recoverable blocks
cactus_consolidated(chr3): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chr18): In the 4 layer there are 4507 flowers in the flowers hierarchy
cactus_consolidated(chr18): In the 5 layer there are 1413 flowers in the flowers hierarchy
cactus_consolidated(chr3): Sequence graph statistics after melting:
cactus_consolidated(chr18): In the 6 layer there are 534 flowers in the flowers hierarchy
cactus_consolidated(chr18): In the 7 layer there are 107 flowers in the flowers hierarchy
cactus_consolidated(chr18): In the 8 layer there are 19 flowers in the flowers hierarchy
cactus_consolidated(chr18): In the 9 layer there are 2 flowers in the flowers hierarchy
cactus_consolidated(chr18): In the 10 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr18): In the 11 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr18): In the 12 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr18): Ran cactus make reference, 697 seconds have elapsed
cactus_consolidated(chr17): Building a matching for 0 stub nodes in the top level problem from 28348 total stubs of which 20196 attached , 203264 total ends, 10098 chains, 87458 blocks 97556 groups and 14174 sequences
cactus_consolidated(chr12): Ran cactus caf, 746 seconds have elapsed
cactus_consolidated(chrX): Ran extended flowers ready for bar, 646 seconds have elapsed
cactus_consolidated(chr4): There were 239003 blocks in the sequence graph, representing 16583486417 total aligned bases
cactus_consolidated(chr4): Block degree stats: min 1, avg 72.666351, median 91, max 104
cactus_consolidated(chr4): Block support stats: min 0.000000, avg 0.012037, median 0.010989, max 0.500000
cactus_consolidated(chr13): Ran cactus bar (use poa:1), 707 seconds have elapsed
cactus_consolidated(chr7): Attaching the sequence to the cactus root 5321, header chr7 with length 160567428 and 150230771 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chr9): Ran cactus caf, 717 seconds have elapsed
cactus_consolidated(chr13): There are 10 layers in the flowers hierarchy
cactus_consolidated(chr13): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr13): Chose reference event 2: Anc0
cactus_consolidated(chr13): For flower: 0 we have 0 nodes for: 220824 ends, 9804 chains, 0 stubs and 96803 blocks
cactus_consolidated(chr13): Building a matching for 0 stub nodes in the top level problem from 27218 total stubs of which 19608 attached , 220824 total ends, 9804 chains, 96803 blocks 106607 groups and 13609 sequences
cactus_consolidated(chr17): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chr17): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chr17): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chr17): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
cactus_consolidated(chr10): Ran extended flowers ready for bar, 821 seconds have elapsed
cactus_consolidated(chr17): In the 1 layer there are 97556 flowers in the flowers hierarchy
cactus_consolidated(chr17): In the 2 layer there are 115614 flowers in the flowers hierarchy
cactus_consolidated(chr3): There were 229580 blocks in the sequence graph, representing 17326319567 total aligned bases
cactus_consolidated(chr3): Block degree stats: min 1, avg 74.974946, median 91, max 96
cactus_consolidated(chr3): Block support stats: min 0.000000, avg 0.010542, median 0.010989, max 0.500000
cactus_consolidated(chr13): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chr13): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chr13): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chr13): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
cactus_consolidated(chr13): In the 1 layer there are 106607 flowers in the flowers hierarchy
cactus_consolidated(chr13): In the 2 layer there are 116582 flowers in the flowers hierarchy
cactus_consolidated(chr17): In the 3 layer there are 26115 flowers in the flowers hierarchy
cactus_consolidated(chr17): In the 4 layer there are 7742 flowers in the flowers hierarchy
cactus_consolidated(chr17): In the 5 layer there are 2538 flowers in the flowers hierarchy
cactus_consolidated(chr17): In the 6 layer there are 854 flowers in the flowers hierarchy
cactus_consolidated(chr17): In the 7 layer there are 185 flowers in the flowers hierarchy
cactus_consolidated(chr17): In the 8 layer there are 27 flowers in the flowers hierarchy
cactus_consolidated(chr17): In the 9 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr17): Ran cactus make reference, 766 seconds have elapsed
cactus_consolidated(chr4): Attaching the sequence to the cactus root 5627, header chr4 with length 193574945 and 181972744 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chr13): In the 3 layer there are 15667 flowers in the flowers hierarchy
cactus_consolidated(chr11): Ran extended flowers ready for bar, 780 seconds have elapsed
cactus_consolidated(chr13): In the 4 layer there are 5798 flowers in the flowers hierarchy
cactus_consolidated(chr13): In the 5 layer there are 1925 flowers in the flowers hierarchy
cactus_consolidated(chr13): In the 6 layer there are 482 flowers in the flowers hierarchy
cactus_consolidated(chr13): In the 7 layer there are 98 flowers in the flowers hierarchy
cactus_consolidated(chr13): In the 8 layer there are 15 flowers in the flowers hierarchy
cactus_consolidated(chr13): In the 9 layer there are 2 flowers in the flowers hierarchy
cactus_consolidated(chr13): Ran cactus make reference, 749 seconds have elapsed
cactus_consolidated(chr4): Attaching the sequence to the cactus root 449, header JAHEPQ010000207.1 with length 218750 and 107119 total bases aligned and 17494 bases aligned to other chromosome threads
cactus_consolidated(chr3): Attaching the sequence to the cactus root 4199, header chr3 with length 201105948 and 190115976 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chr20): Ran cactus make reference bottom up coordinates, 906 seconds have elapsed
cactus_consolidated(chr20): Ran cactus make reference top down coordinates, 907 seconds have elapsed
cactus_consolidated(chr9): Ran extended flowers ready for bar, 784 seconds have elapsed
cactus_consolidated(chr12): Ran extended flowers ready for bar, 817 seconds have elapsed
cactus_consolidated(chr8): Ran cactus caf, 774 seconds have elapsed
23 jobs are running, 0 jobs are issued and waiting to run
cactus_consolidated(chr20): Ran cactus to hal stage, 936 seconds have elapsed
cactus_consolidated(chr20): Dumped sequences for hal file, 951 seconds have elapsed
cactus_consolidated(chr20): Dumped reference sequences, 952 seconds have elapsed
cactus_consolidated(chr20): Cactus consolidated is done!, 952 seconds have elapsed
2023-07-05 14:03:38.250878: Successfully ran cactus_consolidated(chr20): "cactus_consolidated --sequences 'GRCh38 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/GRCh38.fa HG00438.1 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00438.1.fa HG00438.2 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00438.2.fa HG00621.1 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00621.1.fa HG00621.2 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00621.2.fa HG00673.1 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00673.1.fa HG00673.2 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00673.2.fa HG00733.1 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00733.1.fa HG00733.2 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00733.2.fa HG00735.1 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00735.1.fa HG00735.2 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00735.2.fa HG00741.1 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00741.1.fa HG00741.2 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/HG00741.2.fa HG01071.1 /data/tmp/2a95a9ee729755068515bad92da082de/4708/e5c9/tmp44talb0o/H <...> 755068515bad92da082de/4708/e5c9/tmp44talb0o/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 952.3472 seconds and 42.1 Gi memory with job-memory 320.4 Gi. Percent utilization: 13.13
Got message from job at time 07-05-2023 14:03:49: Ran cactus consolidated okay
Issued job 'export_hal' kind-export_hal/instance-oad2kayv v1 with job batch system ID: 2713 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr2): Destroying 6778 recoverable blocks
cactus_consolidated(chr2): The blocks covered 977873 columns for a total of 69200955 aligned bases
cactus_consolidated(chr21): Ran cactus make reference bottom up coordinates, 962 seconds have elapsed
cactus_consolidated(chr21): Ran cactus make reference top down coordinates, 963 seconds have elapsed
Issued job 'export_hal' kind-export_hal/instance-lgld7kuu v1 with job batch system ID: 2714 and disk: 20.1 Gi, memory: 33.5 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr1): Destroying 5690 recoverable blocks
cactus_consolidated(chr1): The blocks covered 748012 columns for a total of 52690351 aligned bases
cactus_consolidated(chr8): Ran extended flowers ready for bar, 848 seconds have elapsed
cactus_consolidated(chr21): Ran cactus to hal stage, 981 seconds have elapsed
cactus_consolidated(chr19): Ran cactus make reference bottom up coordinates, 990 seconds have elapsed
cactus_consolidated(chr19): Ran cactus make reference top down coordinates, 991 seconds have elapsed
cactus_consolidated(chr21): Dumped sequences for hal file, 989 seconds have elapsed
cactus_consolidated(chr21): Dumped reference sequences, 989 seconds have elapsed
cactus_consolidated(chr21): Cactus consolidated is done!, 989 seconds have elapsed
2023-07-05 14:04:29.448248: Successfully ran cactus_consolidated(chr21): "cactus_consolidated --sequences 'GRCh38 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/GRCh38.fa HG00438.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00438.1.fa HG00438.2 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00438.2.fa HG00621.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00621.1.fa HG00621.2 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00621.2.fa HG00673.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00673.1.fa HG00673.2 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00673.2.fa HG00733.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00733.1.fa HG00733.2 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00733.2.fa HG00735.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00735.1.fa HG00735.2 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00735.2.fa HG00741.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00741.1.fa HG00741.2 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/HG00741.2.fa HG01071.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/H <...> f50648d9c685404953bb7/dc96/5bda/tmpkj9ahh4n/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 989.5611 seconds and 48.6 Gi memory with job-memory 220.2 Gi. Percent utilization: 22.07
Got message from job at time 07-05-2023 14:04:37: Ran cactus consolidated okay
Issued job 'export_hal' kind-export_hal/instance-2ekqiwlz v1 with job batch system ID: 2715 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 14:04:43.367351: Running the command: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/35de/23ed/tmpnk02eug_/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/35de/23ed/tmpnk02eug_/Anc0.hal.fa (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098 <...> A20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/9eeeec3d467250f1999ba98b3759d207/35de/23ed/tmpnk02eug_/Anc0.hal --inMemory"
cactus_consolidated(chr14): Ran cactus bar (use poa:1), 892 seconds have elapsed
cactus_consolidated(chr14): There are 10 layers in the flowers hierarchy
cactus_consolidated(chr14): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr14): Chose reference event 2: Anc0
cactus_consolidated(chr14): For flower: 0 we have 0 nodes for: 193296 ends, 6221 chains, 0 stubs and 87247 blocks
cactus_consolidated(chr14): Building a matching for 0 stub nodes in the top level problem from 18802 total stubs of which 12442 attached , 193296 total ends, 6221 chains, 87247 blocks 93468 groups and 9401 sequences
cactus_consolidated(chr19): Ran cactus to hal stage, 1024 seconds have elapsed
cactus_consolidated(chr14): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chr14): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chr14): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chr14): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
Issued job 'export_hal' kind-export_hal/instance-fnd8kizy v1 with job batch system ID: 2716 and disk: 12.3 Gi, memory: 20.4 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr14): In the 1 layer there are 93468 flowers in the flowers hierarchy
cactus_consolidated(chr14): In the 2 layer there are 108231 flowers in the flowers hierarchy
cactus_consolidated(chr19): Dumped sequences for hal file, 1039 seconds have elapsed
cactus_consolidated(chr19): Dumped reference sequences, 1040 seconds have elapsed
cactus_consolidated(chr19): Cactus consolidated is done!, 1040 seconds have elapsed
2023-07-05 14:05:13.663490: Successfully ran cactus_consolidated(chr19): "cactus_consolidated --sequences 'GRCh38 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/GRCh38.fa HG00438.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00438.1.fa HG00438.2 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00438.2.fa HG00621.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00621.1.fa HG00621.2 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00621.2.fa HG00673.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00673.1.fa HG00673.2 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00673.2.fa HG00733.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00733.1.fa HG00733.2 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00733.2.fa HG00735.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00735.1.fa HG00735.2 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00735.2.fa HG00741.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00741.1.fa HG00741.2 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/HG00741.2.fa HG01071.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/9d71/9906/tmpaxappa9_/H <...> 56269b41669e7d9612f5/9d71/9906/tmpaxappa9_/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 1041.4466 seconds and 47.2 Gi memory with job-memory 303.0 Gi. Percent utilization: 15.58
cactus_consolidated(chr1): Destroying 4 recoverable blocks
cactus_consolidated(chr1): The blocks covered 4176 columns for a total of 8352 aligned bases
cactus_consolidated(chr12): Ran cactus bar (use poa:1), 963 seconds have elapsed
cactus_consolidated(chr12): There are 9 layers in the flowers hierarchy
cactus_consolidated(chr12): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr12): Chose reference event 2: Anc0
cactus_consolidated(chr12): For flower: 0 we have 0 nodes for: 300610 ends, 10758 chains, 0 stubs and 134632 blocks
cactus_consolidated(chr2): Destroying 0 recoverable blocks
cactus_consolidated(chr2): The blocks covered 0 columns for a total of 0 aligned bases
Got message from job at time 07-05-2023 14:05:24: Ran cactus consolidated okay
cactus_consolidated(chr2): Sequence graph statistics after melting:
Issued job 'export_hal' kind-export_hal/instance-inay8_8j v1 with job batch system ID: 2717 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr14): In the 3 layer there are 22220 flowers in the flowers hierarchy
cactus_consolidated(chr12): Building a matching for 0 stub nodes in the top level problem from 31346 total stubs of which 21516 attached , 300610 total ends, 10758 chains, 134632 blocks 145390 groups and 15673 sequences
cactus_consolidated(chr14): In the 4 layer there are 5389 flowers in the flowers hierarchy
cactus_consolidated(chr14): In the 5 layer there are 1094 flowers in the flowers hierarchy
cactus_consolidated(chr14): In the 6 layer there are 272 flowers in the flowers hierarchy
cactus_consolidated(chr14): In the 7 layer there are 57 flowers in the flowers hierarchy
cactus_consolidated(chr14): In the 8 layer there are 13 flowers in the flowers hierarchy
cactus_consolidated(chr14): In the 9 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr14): Ran cactus make reference, 937 seconds have elapsed
Issued job 'export_hal' kind-export_hal/instance-w6ngvp4o v1 with job batch system ID: 2718 and disk: 19.6 Gi, memory: 32.6 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr6): Ran cactus caf, 938 seconds have elapsed
2023-07-05 14:05:36.516849: Running the command: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/41ad/4618/tmpdggmyyu8/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/41ad/4618/tmpdggmyyu8/Anc0.hal.fa (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098 <...> A20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/9eeeec3d467250f1999ba98b3759d207/41ad/4618/tmpdggmyyu8/Anc0.hal --inMemory"
cactus_consolidated(chr12): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chr12): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chr12): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chr12): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
cactus_consolidated(chr12): In the 1 layer there are 145390 flowers in the flowers hierarchy
cactus_consolidated(chr12): In the 2 layer there are 162120 flowers in the flowers hierarchy
cactus_consolidated(chr2): There were 293912 blocks in the sequence graph, representing 21014185325 total aligned bases
cactus_consolidated(chr2): Block degree stats: min 1, avg 72.368046, median 91, max 113
cactus_consolidated(chr2): Block support stats: min 0.000000, avg 0.010704, median 0.010989, max 0.500000
cactus_consolidated(chr10): Ran cactus bar (use poa:1), 1064 seconds have elapsed
cactus_consolidated(chr10): There are 10 layers in the flowers hierarchy
cactus_consolidated(chr10): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr10): Chose reference event 2: Anc0
cactus_consolidated(chr10): For flower: 0 we have 0 nodes for: 282834 ends, 13557 chains, 0 stubs and 122172 blocks
cactus_consolidated(chr11): Ran cactus bar (use poa:1), 996 seconds have elapsed
cactus_consolidated(chr15): Ran cactus make reference bottom up coordinates, 921 seconds have elapsed
cactus_consolidated(chr11): There are 9 layers in the flowers hierarchy
cactus_consolidated(chr11): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr11): Chose reference event 2: Anc0
cactus_consolidated(chr15): Ran cactus make reference top down coordinates, 922 seconds have elapsed
cactus_consolidated(chr11): For flower: 0 we have 0 nodes for: 288694 ends, 10402 chains, 0 stubs and 129104 blocks
cactus_consolidated(chr10): Building a matching for 0 stub nodes in the top level problem from 38490 total stubs of which 27114 attached , 282834 total ends, 13557 chains, 122172 blocks 135729 groups and 19245 sequences
2023-07-05 14:06:11.812077: Running the command: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/1712/3d41/tmpumc7v8ai/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/1712/3d41/tmpumc7v8ai/Anc0.hal.fa (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098 <...> A20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/9eeeec3d467250f1999ba98b3759d207/1712/3d41/tmpumc7v8ai/Anc0.hal --inMemory"
cactus_consolidated(chr11): Building a matching for 0 stub nodes in the top level problem from 30486 total stubs of which 20804 attached , 288694 total ends, 10402 chains, 129104 blocks 139506 groups and 15243 sequences
cactus_consolidated(chr18): Ran cactus make reference bottom up coordinates, 972 seconds have elapsed
cactus_consolidated(chr18): Ran cactus make reference top down coordinates, 973 seconds have elapsed
cactus_consolidated(chr12): In the 3 layer there are 19484 flowers in the flowers hierarchy
cactus_consolidated(chrX): Ran cactus bar (use poa:1), 923 seconds have elapsed
cactus_consolidated(chr12): In the 4 layer there are 5812 flowers in the flowers hierarchy
cactus_consolidated(chr12): In the 5 layer there are 1612 flowers in the flowers hierarchy
cactus_consolidated(chr12): In the 6 layer there are 359 flowers in the flowers hierarchy
cactus_consolidated(chr12): In the 7 layer there are 81 flowers in the flowers hierarchy
cactus_consolidated(chr12): In the 8 layer there are 2 flowers in the flowers hierarchy
cactus_consolidated(chr12): Ran cactus make reference, 1023 seconds have elapsed
cactus_consolidated(chrX): There are 10 layers in the flowers hierarchy
cactus_consolidated(chrX): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chrX): Chose reference event 2: Anc0
cactus_consolidated(chrX): For flower: 0 we have 0 nodes for: 276926 ends, 12041 chains, 0 stubs and 120063 blocks
cactus_consolidated(chr5): Ran cactus caf, 951 seconds have elapsed
cactus_consolidated(chr10): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chr10): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chr10): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chr10): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
cactus_consolidated(chr1): Destroying 0 recoverable blocks
cactus_consolidated(chr1): The blocks covered 0 columns for a total of 0 aligned bases
cactus_consolidated(chr7): Ran cactus caf, 917 seconds have elapsed
cactus_consolidated(chr1): Sequence graph statistics after melting:
cactus_consolidated(chrX): Building a matching for 0 stub nodes in the top level problem from 36800 total stubs of which 24082 attached , 276926 total ends, 12041 chains, 120063 blocks 132104 groups and 18400 sequences
cactus_consolidated(chr11): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chr11): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chr11): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chr11): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
cactus_consolidated(chr10): In the 1 layer there are 135729 flowers in the flowers hierarchy
cactus_consolidated(chr10): In the 2 layer there are 161796 flowers in the flowers hierarchy
cactus_consolidated(chr11): In the 1 layer there are 139506 flowers in the flowers hierarchy
cactus_consolidated(chr15): Ran cactus to hal stage, 952 seconds have elapsed
cactus_consolidated(chr11): In the 2 layer there are 155298 flowers in the flowers hierarchy
cactus_consolidated(chrX): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chrX): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chrX): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chrX): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
cactus_consolidated(chrX): In the 1 layer there are 132104 flowers in the flowers hierarchy
cactus_consolidated(chrX): In the 2 layer there are 158024 flowers in the flowers hierarchy
cactus_consolidated(chr18): Ran cactus to hal stage, 1004 seconds have elapsed
cactus_consolidated(chr16): Ran cactus bar (use poa:1), 1010 seconds have elapsed
cactus_consolidated(chr16): There are 11 layers in the flowers hierarchy
cactus_consolidated(chr16): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr16): Chose reference event 2: Anc0
cactus_consolidated(chr16): For flower: 0 we have 0 nodes for: 182134 ends, 9834 chains, 0 stubs and 77005 blocks
cactus_consolidated(chr1): There were 305513 blocks in the sequence graph, representing 19943790767 total aligned bases
cactus_consolidated(chr1): Block degree stats: min 1, avg 69.030814, median 91, max 124
cactus_consolidated(chr1): Block support stats: min 0.000000, avg 0.013577, median 0.010989, max 0.500000
cactus_consolidated(chr16): Building a matching for 0 stub nodes in the top level problem from 28124 total stubs of which 19668 attached , 182134 total ends, 9834 chains, 77005 blocks 86839 groups and 14062 sequences
cactus_consolidated(chr15): Dumped sequences for hal file, 971 seconds have elapsed
cactus_consolidated(chr15): Dumped reference sequences, 972 seconds have elapsed
cactus_consolidated(chr15): Cactus consolidated is done!, 972 seconds have elapsed
2023-07-05 14:06:56.958648: Successfully ran cactus_consolidated(chr15): "cactus_consolidated --sequences 'GRCh38 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/GRCh38.fa HG00438.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00438.1.fa HG00438.2 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00438.2.fa HG00621.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00621.1.fa HG00621.2 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00621.2.fa HG00673.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00673.1.fa HG00673.2 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00673.2.fa HG00733.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00733.1.fa HG00733.2 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00733.2.fa HG00735.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00735.1.fa HG00735.2 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00735.2.fa HG00741.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00741.1.fa HG00741.2 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/HG00741.2.fa HG01071.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/H <...> 75b4fa4aab14527c65d50/e236/d600/tmp2r60j6_2/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 972.5679 seconds and 42.0 Gi memory with job-memory 386.0 Gi. Percent utilization: 10.88
cactus_consolidated(chr10): In the 3 layer there are 39762 flowers in the flowers hierarchy
cactus_consolidated(chr11): In the 3 layer there are 19717 flowers in the flowers hierarchy
cactus_consolidated(chr16): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chr16): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chr16): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chr16): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
cactus_consolidated(chr11): In the 4 layer there are 5786 flowers in the flowers hierarchy
cactus_consolidated(chr11): In the 5 layer there are 1267 flowers in the flowers hierarchy
cactus_consolidated(chr11): In the 6 layer there are 302 flowers in the flowers hierarchy
cactus_consolidated(chr11): In the 7 layer there are 72 flowers in the flowers hierarchy
cactus_consolidated(chr11): In the 8 layer there are 8 flowers in the flowers hierarchy
cactus_consolidated(chr11): Ran cactus make reference, 1053 seconds have elapsed
cactus_consolidated(chr2): Attaching the sequence to the cactus root 8711, header chr2 with length 242696752 and 230517170 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chr10): In the 4 layer there are 9889 flowers in the flowers hierarchy
cactus_consolidated(chr10): In the 5 layer there are 3543 flowers in the flowers hierarchy
cactus_consolidated(chr18): Dumped sequences for hal file, 1020 seconds have elapsed
cactus_consolidated(chr10): In the 6 layer there are 999 flowers in the flowers hierarchy
cactus_consolidated(chr10): In the 7 layer there are 300 flowers in the flowers hierarchy
cactus_consolidated(chr10): In the 8 layer there are 58 flowers in the flowers hierarchy
cactus_consolidated(chr10): In the 9 layer there are 5 flowers in the flowers hierarchy
cactus_consolidated(chr10): Ran cactus make reference, 1127 seconds have elapsed
cactus_consolidated(chr18): Dumped reference sequences, 1020 seconds have elapsed
cactus_consolidated(chr18): Cactus consolidated is done!, 1020 seconds have elapsed
cactus_consolidated(chr6): Ran extended flowers ready for bar, 1028 seconds have elapsed
2023-07-05 14:07:05.780598: Successfully ran cactus_consolidated(chr18): "cactus_consolidated --sequences 'GRCh38 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/GRCh38.fa HG00438.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00438.1.fa HG00438.2 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00438.2.fa HG00621.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00621.1.fa HG00621.2 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00621.2.fa HG00673.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00673.1.fa HG00673.2 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00673.2.fa HG00733.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00733.1.fa HG00733.2 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00733.2.fa HG00735.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00735.1.fa HG00735.2 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00735.2.fa HG00741.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00741.1.fa HG00741.2 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/HG00741.2.fa HG01071.1 /data/tmp/fb6bb230be1f50648d9c685404953bb7/186a/27ea/tmpumizd8h5/H <...> 50648d9c685404953bb7/186a/27ea/tmpumizd8h5/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 1021.2809 seconds and 39.5 Gi memory with job-memory 365.6 Gi. Percent utilization: 10.81
cactus_consolidated(chrX): In the 3 layer there are 35919 flowers in the flowers hierarchy
cactus_consolidated(chr16): In the 1 layer there are 86839 flowers in the flowers hierarchy
cactus_consolidated(chrX): In the 4 layer there are 14413 flowers in the flowers hierarchy
cactus_consolidated(chr16): In the 2 layer there are 109602 flowers in the flowers hierarchy
cactus_consolidated(chrX): In the 5 layer there are 4492 flowers in the flowers hierarchy
cactus_consolidated(chrX): In the 6 layer there are 1209 flowers in the flowers hierarchy
cactus_consolidated(chrX): In the 7 layer there are 379 flowers in the flowers hierarchy
cactus_consolidated(chrX): In the 8 layer there are 92 flowers in the flowers hierarchy
cactus_consolidated(chrX): In the 9 layer there are 8 flowers in the flowers hierarchy
cactus_consolidated(chrX): Ran cactus make reference, 972 seconds have elapsed
Got message from job at time 07-05-2023 14:07:11: Ran cactus consolidated okay
Issued job 'export_hal' kind-export_hal/instance-grj_faf4 v1 with job batch system ID: 2719 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 14:07:18: Ran cactus consolidated okay
Issued job 'export_hal' kind-export_hal/instance-hwvdu52n v1 with job batch system ID: 2720 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr16): In the 3 layer there are 36903 flowers in the flowers hierarchy
cactus_consolidated(chr16): In the 4 layer there are 9226 flowers in the flowers hierarchy
cactus_consolidated(chr16): In the 5 layer there are 3330 flowers in the flowers hierarchy
cactus_consolidated(chr16): In the 6 layer there are 613 flowers in the flowers hierarchy
cactus_consolidated(chr16): In the 7 layer there are 80 flowers in the flowers hierarchy
cactus_consolidated(chr16): In the 8 layer there are 4 flowers in the flowers hierarchy
cactus_consolidated(chr16): In the 9 layer there are 5 flowers in the flowers hierarchy
cactus_consolidated(chr16): In the 10 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr16): Ran cactus make reference, 1051 seconds have elapsed
Issued job 'export_hal' kind-export_hal/instance-p7vps_xs v1 with job batch system ID: 2721 and disk: 25.0 Gi, memory: 41.6 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_hal' kind-export_hal/instance-8wrcdpwo v1 with job batch system ID: 2722 and disk: 23.1 Gi, memory: 38.6 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr1): Attaching the sequence to the cactus root 95, header chr1 with length 248956422 and 223897014 total bases aligned and 0 bases aligned to other chromosome threads
cactus_consolidated(chr4): Ran cactus caf, 1059 seconds have elapsed
cactus_consolidated(chr9): Ran cactus bar (use poa:1), 1077 seconds have elapsed
cactus_consolidated(chr9): There are 12 layers in the flowers hierarchy
cactus_consolidated(chr9): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr9): Chose reference event 2: Anc0
cactus_consolidated(chr9): For flower: 0 we have 0 nodes for: 238008 ends, 8789 chains, 0 stubs and 105794 blocks
cactus_consolidated(chr7): Ran extended flowers ready for bar, 1004 seconds have elapsed
cactus_consolidated(chr5): Ran extended flowers ready for bar, 1041 seconds have elapsed
cactus_consolidated(chr3): Ran cactus caf, 1031 seconds have elapsed
cactus_consolidated(chr9): Building a matching for 0 stub nodes in the top level problem from 26420 total stubs of which 17578 attached , 238008 total ends, 8789 chains, 105794 blocks 114583 groups and 13210 sequences
cactus_consolidated(chr9): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chr9): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chr9): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chr9): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
cactus_consolidated(chr9): In the 1 layer there are 114583 flowers in the flowers hierarchy
cactus_consolidated(chr9): In the 2 layer there are 144109 flowers in the flowers hierarchy
2023-07-05 14:08:19.647075: Successfully ran: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/41ad/4618/tmpdggmyyu8/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/41ad/4618/tmpdggmyyu8/Anc0.hal.fa '(GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1 <...> _MINIGRAPH_:0.025)Anc0;' /data/tmp/9eeeec3d467250f1999ba98b3759d207/41ad/4618/tmpdggmyyu8/Anc0.hal --inMemory" in 163.1292 seconds and 2.8 Gi memory with job-memory 20.4 Gi. Percent utilization: 13.79
2023-07-05 14:08:19.647769: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/41ad/4618/tmpdggmyyu8/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
2023-07-05 14:08:19.714686: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/41ad/4618/tmpdggmyyu8/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.0663 seconds and 6.0 Mi memory
2023-07-05 14:08:19.719074: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/41ad/4618/tmpdggmyyu8/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 14:08:19.723726: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/41ad/4618/tmpdggmyyu8/Anc0.hal CACTUS_CONFIG 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 <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0038 seconds and 5.9 Mi memory
2023-07-05 14:08:19.723901: Running the command: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/41ad/4618/tmpdggmyyu8/Anc0.hal GRCh38"
2023-07-05 14:08:19.818434: Successfully ran: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/41ad/4618/tmpdggmyyu8/Anc0.hal GRCh38" in 0.0939 seconds and 8.0 Mi memory with job-memory 20.4 Gi. Percent utilization: 0.03832
Issued job 'export_vg' kind-export_vg/instance-81s0wqk8 v1 with job batch system ID: 2723 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 14:08:24.317171: Running the command: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/76c3/a211/tmpnqkpp198/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/76c3/a211/tmpnqkpp198/Anc0.hal.fa (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098 <...> A20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/9eeeec3d467250f1999ba98b3759d207/76c3/a211/tmpnqkpp198/Anc0.hal --inMemory"
2023-07-05 14:08:25.637759: Running the command: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/65a8/4bc0/tmp2i1gxpoq/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/65a8/4bc0/tmp2i1gxpoq/Anc0.hal.fa (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098 <...> A20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/9eeeec3d467250f1999ba98b3759d207/65a8/4bc0/tmp2i1gxpoq/Anc0.hal --inMemory"
cactus_consolidated(chr13): Ran cactus make reference bottom up coordinates, 1105 seconds have elapsed
cactus_consolidated(chr13): Ran cactus make reference top down coordinates, 1106 seconds have elapsed
Issued job 'export_vg' kind-export_vg/instance-yhfcmjvs v1 with job batch system ID: 2724 and disk: 3.2 Gi, memory: 64.8 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr9): In the 3 layer there are 38584 flowers in the flowers hierarchy
cactus_consolidated(chr17): Ran cactus make reference bottom up coordinates, 1145 seconds have elapsed
cactus_consolidated(chr17): Ran cactus make reference top down coordinates, 1147 seconds have elapsed
cactus_consolidated(chr9): In the 4 layer there are 10958 flowers in the flowers hierarchy
cactus_consolidated(chr9): In the 5 layer there are 2855 flowers in the flowers hierarchy
cactus_consolidated(chr9): In the 6 layer there are 798 flowers in the flowers hierarchy
cactus_consolidated(chr9): In the 7 layer there are 266 flowers in the flowers hierarchy
cactus_consolidated(chr9): In the 8 layer there are 87 flowers in the flowers hierarchy
cactus_consolidated(chr9): In the 9 layer there are 131 flowers in the flowers hierarchy
cactus_consolidated(chr9): In the 10 layer there are 25 flowers in the flowers hierarchy
cactus_consolidated(chr9): In the 11 layer there are 8 flowers in the flowers hierarchy
cactus_consolidated(chr9): Ran cactus make reference, 1132 seconds have elapsed
2023-07-05 14:09:00.957377: Running the command: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/b2a7/2e15/tmph4ez4qm8/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
cactus_consolidated(chr13): Ran cactus to hal stage, 1145 seconds have elapsed
2023-07-05 14:09:06.720930: Successfully ran: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/35de/23ed/tmpnk02eug_/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/35de/23ed/tmpnk02eug_/Anc0.hal.fa '(GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1 <...> _MINIGRAPH_:0.025)Anc0;' /data/tmp/9eeeec3d467250f1999ba98b3759d207/35de/23ed/tmpnk02eug_/Anc0.hal --inMemory" in 263.3526 seconds and 4.3 Gi memory with job-memory 33.5 Gi. Percent utilization: 12.93
2023-07-05 14:09:06.721652: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/35de/23ed/tmpnk02eug_/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
2023-07-05 14:09:06.726581: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/35de/23ed/tmpnk02eug_/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.0042 seconds and 5.9 Mi memory
2023-07-05 14:09:06.728929: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/35de/23ed/tmpnk02eug_/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 14:09:06.733502: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/35de/23ed/tmpnk02eug_/Anc0.hal CACTUS_CONFIG 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 <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0038 seconds and 5.9 Mi memory
2023-07-05 14:09:06.733674: Running the command: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/35de/23ed/tmpnk02eug_/Anc0.hal GRCh38"
2023-07-05 14:09:06.771525: Successfully ran: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/35de/23ed/tmpnk02eug_/Anc0.hal GRCh38" in 0.0372 seconds and 8.2 Mi memory with job-memory 33.5 Gi. Percent utilization: 0.02383
Issued job 'export_vg' kind-export_vg/instance-rsk2muy7 v1 with job batch system ID: 2725 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr17): Ran cactus to hal stage, 1181 seconds have elapsed
cactus_consolidated(chr4): Ran extended flowers ready for bar, 1157 seconds have elapsed
cactus_consolidated(chr13): Dumped sequences for hal file, 1167 seconds have elapsed
cactus_consolidated(chr13): Dumped reference sequences, 1168 seconds have elapsed
cactus_consolidated(chr13): Cactus consolidated is done!, 1168 seconds have elapsed
Issued job 'export_vg' kind-export_vg/instance-2j5nyyma v1 with job batch system ID: 2726 and disk: 5.2 Gi, memory: 104.4 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 14:09:30.676024: Successfully ran cactus_consolidated(chr13): "cactus_consolidated --sequences 'GRCh38 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/GRCh38.fa HG00438.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00438.1.fa HG00438.2 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00438.2.fa HG00621.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00621.1.fa HG00621.2 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00621.2.fa HG00673.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00673.1.fa HG00673.2 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00673.2.fa HG00733.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00733.1.fa HG00733.2 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00733.2.fa HG00735.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00735.1.fa HG00735.2 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00735.2.fa HG00741.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00741.1.fa HG00741.2 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/HG00741.2.fa HG01071.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/H <...> 5b998e86173ec3f6a1a4/c63a/3c70/tmp_azsl895/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 1168.6949 seconds and 35.6 Gi memory with job-memory 444.8 Gi. Percent utilization: 7.996
cactus_consolidated(chr3): Ran extended flowers ready for bar, 1129 seconds have elapsed
cactus_consolidated(chr17): Dumped sequences for hal file, 1199 seconds have elapsed
cactus_consolidated(chr17): Dumped reference sequences, 1199 seconds have elapsed
cactus_consolidated(chr17): Cactus consolidated is done!, 1199 seconds have elapsed
2023-07-05 14:09:35.770784: Successfully ran cactus_consolidated(chr17): "cactus_consolidated --sequences 'GRCh38 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/GRCh38.fa HG00438.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00438.1.fa HG00438.2 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00438.2.fa HG00621.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00621.1.fa HG00621.2 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00621.2.fa HG00673.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00673.1.fa HG00673.2 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00673.2.fa HG00733.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00733.1.fa HG00733.2 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00733.2.fa HG00735.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00735.1.fa HG00735.2 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00735.2.fa HG00741.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00741.1.fa HG00741.2 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/HG00741.2.fa HG01071.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/H <...> 5f3ea1bb0ff294ea9b41/0701/54e2/tmp1gyzb7y7/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 1200.0783 seconds and 46.5 Gi memory with job-memory 382.3 Gi. Percent utilization: 12.17
2023-07-05 14:09:42.668292: Successfully ran: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/00a8/5bc3/tmp5wxmtmcp/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 522.0583 seconds and 10.6 Gi memory with job-memory 64.0 Gi. Percent utilization: 16.52
Got message from job at time 07-05-2023 14:09:51: Ran cactus consolidated okay
Issued job 'export_hal' kind-export_hal/instance-p5x8wqwj v1 with job batch system ID: 2727 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 14:09:54: Ran cactus consolidated okay
Issued job 'export_hal' kind-export_hal/instance-5z1en95a v1 with job batch system ID: 2728 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_hal' kind-export_hal/instance-whtm0xs4 v1 with job batch system ID: 2729 and disk: 29.7 Gi, memory: 49.5 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 14:10:02.209737: Running the command: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/1b57/7401/tmp4ldpzwap/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
cactus_consolidated(chr6): Ran cactus bar (use poa:1), 1218 seconds have elapsed
cactus_consolidated(chr6): There are 12 layers in the flowers hierarchy
cactus_consolidated(chr6): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr6): Chose reference event 2: Anc0
cactus_consolidated(chr6): For flower: 0 we have 0 nodes for: 379436 ends, 13853 chains, 0 stubs and 169858 blocks
cactus_consolidated(chr6): Building a matching for 0 stub nodes in the top level problem from 39720 total stubs of which 27706 attached , 379436 total ends, 13853 chains, 169858 blocks 183711 groups and 19860 sequences
2023-07-05 14:10:25.691089: Successfully ran: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/1712/3d41/tmpumc7v8ai/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/1712/3d41/tmpumc7v8ai/Anc0.hal.fa '(GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1 <...> _MINIGRAPH_:0.025)Anc0;' /data/tmp/9eeeec3d467250f1999ba98b3759d207/1712/3d41/tmpumc7v8ai/Anc0.hal --inMemory" in 253.8779 seconds and 4.5 Gi memory with job-memory 32.6 Gi. Percent utilization: 13.86
2023-07-05 14:10:25.692464: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/1712/3d41/tmpumc7v8ai/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
2023-07-05 14:10:25.696650: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/1712/3d41/tmpumc7v8ai/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.0035 seconds and 5.9 Mi memory
2023-07-05 14:10:25.700563: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/1712/3d41/tmpumc7v8ai/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 14:10:25.704220: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/1712/3d41/tmpumc7v8ai/Anc0.hal CACTUS_CONFIG 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 <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0029 seconds and 5.9 Mi memory
2023-07-05 14:10:25.704398: Running the command: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/1712/3d41/tmpumc7v8ai/Anc0.hal GRCh38"
2023-07-05 14:10:25.752300: Successfully ran: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/1712/3d41/tmpumc7v8ai/Anc0.hal GRCh38" in 0.0472 seconds and 8.4 Mi memory with job-memory 32.6 Gi. Percent utilization: 0.02513
Issued job 'export_vg' kind-export_vg/instance-xsbgzf9o v1 with job batch system ID: 2730 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_hal' kind-export_hal/instance-vg0im5bo v1 with job batch system ID: 2731 and disk: 25.0 Gi, memory: 41.7 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr6): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chr6): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chr6): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chr6): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
cactus_consolidated(chr8): Ran cactus bar (use poa:1), 1243 seconds have elapsed
cactus_consolidated(chr8): There are 11 layers in the flowers hierarchy
cactus_consolidated(chr8): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr8): Chose reference event 2: Anc0
cactus_consolidated(chr8): For flower: 0 we have 0 nodes for: 296008 ends, 11781 chains, 0 stubs and 130665 blocks
2023-07-05 14:10:49.305374: Running the command: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/8fe5/e4d9/tmpuzsahnt6/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/8fe5/e4d9/tmpuzsahnt6/Anc0.hal.fa (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098 <...> A20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/9eeeec3d467250f1999ba98b3759d207/8fe5/e4d9/tmpuzsahnt6/Anc0.hal --inMemory"
cactus_consolidated(chr8): Building a matching for 0 stub nodes in the top level problem from 34678 total stubs of which 23562 attached , 296008 total ends, 11781 chains, 130665 blocks 142446 groups and 17339 sequences
cactus_consolidated(chr6): In the 1 layer there are 183711 flowers in the flowers hierarchy
cactus_consolidated(chr14): Ran cactus make reference bottom up coordinates, 1265 seconds have elapsed
cactus_consolidated(chr14): Ran cactus make reference top down coordinates, 1266 seconds have elapsed
cactus_consolidated(chr6): In the 2 layer there are 202494 flowers in the flowers hierarchy
Issued job 'export_vg' kind-export_vg/instance-5i7wauv7 v1 with job batch system ID: 2732 and disk: 4.9 Gi, memory: 97.7 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr8): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chr8): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chr8): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chr8): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
2023-07-05 14:11:18.459036: Running the command: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/50bc/de94/tmp3xi9y6wm/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/50bc/de94/tmp3xi9y6wm/Anc0.hal.fa (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098 <...> A20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/9eeeec3d467250f1999ba98b3759d207/50bc/de94/tmp3xi9y6wm/Anc0.hal --inMemory"
cactus_consolidated(chr8): In the 1 layer there are 142446 flowers in the flowers hierarchy
cactus_consolidated(chr8): In the 2 layer there are 165302 flowers in the flowers hierarchy
cactus_consolidated(chr6): In the 3 layer there are 22925 flowers in the flowers hierarchy
cactus_consolidated(chr6): In the 4 layer there are 7820 flowers in the flowers hierarchy
cactus_consolidated(chr6): In the 5 layer there are 2543 flowers in the flowers hierarchy
cactus_consolidated(chr6): In the 6 layer there are 762 flowers in the flowers hierarchy
cactus_consolidated(chr6): In the 7 layer there are 120 flowers in the flowers hierarchy
cactus_consolidated(chr6): In the 8 layer there are 17 flowers in the flowers hierarchy
cactus_consolidated(chr6): In the 9 layer there are 11 flowers in the flowers hierarchy
cactus_consolidated(chr6): In the 10 layer there are 3 flowers in the flowers hierarchy
cactus_consolidated(chr6): In the 11 layer there are 2 flowers in the flowers hierarchy
cactus_consolidated(chr6): Ran cactus make reference, 1294 seconds have elapsed
2023-07-05 14:11:31.989495: Running the command: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/5211/4649/tmp5hrcz37o/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
cactus_consolidated(chr14): Ran cactus to hal stage, 1300 seconds have elapsed
cactus_consolidated(chr8): In the 3 layer there are 29602 flowers in the flowers hierarchy
cactus_consolidated(chr8): In the 4 layer there are 7571 flowers in the flowers hierarchy
cactus_consolidated(chr8): In the 5 layer there are 2301 flowers in the flowers hierarchy
cactus_consolidated(chr8): In the 6 layer there are 655 flowers in the flowers hierarchy
cactus_consolidated(chr8): In the 7 layer there are 130 flowers in the flowers hierarchy
cactus_consolidated(chr8): In the 8 layer there are 119 flowers in the flowers hierarchy
cactus_consolidated(chr8): In the 9 layer there are 8 flowers in the flowers hierarchy
cactus_consolidated(chr8): In the 10 layer there are 2 flowers in the flowers hierarchy
cactus_consolidated(chr8): Ran cactus make reference, 1305 seconds have elapsed
cactus_consolidated(chr14): Dumped sequences for hal file, 1321 seconds have elapsed
cactus_consolidated(chr14): Dumped reference sequences, 1322 seconds have elapsed
cactus_consolidated(chr14): Cactus consolidated is done!, 1322 seconds have elapsed
2023-07-05 14:11:55.029033: Successfully ran cactus_consolidated(chr14): "cactus_consolidated --sequences 'GRCh38 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/GRCh38.fa HG00438.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00438.1.fa HG00438.2 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00438.2.fa HG00621.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00621.1.fa HG00621.2 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00621.2.fa HG00673.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00673.1.fa HG00673.2 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00673.2.fa HG00733.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00733.1.fa HG00733.2 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00733.2.fa HG00735.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00735.1.fa HG00735.2 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00735.2.fa HG00741.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00741.1.fa HG00741.2 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/HG00741.2.fa HG01071.1 /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/H <...> 5f3ea1bb0ff294ea9b41/2b0d/ec6a/tmpsvy_g4lv/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 1322.7608 seconds and 46.1 Gi memory with job-memory 416.5 Gi. Percent utilization: 11.07
Got message from job at time 07-05-2023 14:12:09: Ran cactus consolidated okay
Issued job 'export_hal' kind-export_hal/instance-br53dmx4 v1 with job batch system ID: 2733 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_hal' kind-export_hal/instance-p4iwhl_e v1 with job batch system ID: 2734 and disk: 27.5 Gi, memory: 45.9 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr5): Ran cactus bar (use poa:1), 1320 seconds have elapsed
cactus_consolidated(chr5): There are 11 layers in the flowers hierarchy
cactus_consolidated(chr5): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr5): Chose reference event 2: Anc0
cactus_consolidated(chr5): For flower: 0 we have 0 nodes for: 376932 ends, 14259 chains, 0 stubs and 166816 blocks
cactus_consolidated(chr5): Building a matching for 0 stub nodes in the top level problem from 43300 total stubs of which 28518 attached , 376932 total ends, 14259 chains, 166816 blocks 181075 groups and 21650 sequences
cactus_consolidated(chr16): Ran cactus make reference bottom up coordinates, 1374 seconds have elapsed
cactus_consolidated(chr16): Ran cactus make reference top down coordinates, 1375 seconds have elapsed
cactus_consolidated(chr4): Ran cactus bar (use poa:1), 1373 seconds have elapsed
cactus_consolidated(chr3): Ran cactus bar (use poa:1), 1336 seconds have elapsed
cactus_consolidated(chr4): There are 11 layers in the flowers hierarchy
cactus_consolidated(chr4): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr4): Chose reference event 2: Anc0
cactus_consolidated(chr4): For flower: 0 we have 36 nodes for: 416684 ends, 15015 chains, 4 stubs and 186151 blocks
cactus_consolidated(chr3): There are 11 layers in the flowers hierarchy
cactus_consolidated(chr3): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr3): Chose reference event 2: Anc0
cactus_consolidated(chr3): For flower: 0 we have 0 nodes for: 409288 ends, 13173 chains, 0 stubs and 185296 blocks
cactus_consolidated(chr5): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chr5): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chr5): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chr5): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
cactus_consolidated(chr3): Building a matching for 0 stub nodes in the top level problem from 38696 total stubs of which 26346 attached , 409288 total ends, 13173 chains, 185296 blocks 198469 groups and 19348 sequences
cactus_consolidated(chr4): Building a matching for 4 stub nodes in the top level problem from 44382 total stubs of which 29964 attached , 416684 total ends, 15015 chains, 186151 blocks 201101 groups and 22191 sequences
cactus_consolidated(chr5): In the 1 layer there are 181075 flowers in the flowers hierarchy
cactus_consolidated(chr5): In the 2 layer there are 202692 flowers in the flowers hierarchy
2023-07-05 14:13:16.783045: Running the command: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/c228/a869/tmpkpwnm8nz/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/c228/a869/tmpkpwnm8nz/Anc0.hal.fa (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098 <...> A20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/9eeeec3d467250f1999ba98b3759d207/c228/a869/tmpkpwnm8nz/Anc0.hal --inMemory"
cactus_consolidated(chr16): Ran cactus to hal stage, 1406 seconds have elapsed
2023-07-05 14:13:30.795880: Successfully ran: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/76c3/a211/tmpnqkpp198/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/76c3/a211/tmpnqkpp198/Anc0.hal.fa '(GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1 <...> _MINIGRAPH_:0.025)Anc0;' /data/tmp/9eeeec3d467250f1999ba98b3759d207/76c3/a211/tmpnqkpp198/Anc0.hal --inMemory" in 306.4777 seconds and 4.9 Gi memory with job-memory 38.6 Gi. Percent utilization: 12.64
2023-07-05 14:13:30.797433: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/76c3/a211/tmpnqkpp198/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
2023-07-05 14:13:30.802073: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/76c3/a211/tmpnqkpp198/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.0039 seconds and 5.9 Mi memory
2023-07-05 14:13:30.804377: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/76c3/a211/tmpnqkpp198/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 14:13:30.808533: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/76c3/a211/tmpnqkpp198/Anc0.hal CACTUS_CONFIG 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 <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0034 seconds and 5.9 Mi memory
2023-07-05 14:13:30.808703: Running the command: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/76c3/a211/tmpnqkpp198/Anc0.hal GRCh38"
2023-07-05 14:13:30.849573: Successfully ran: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/76c3/a211/tmpnqkpp198/Anc0.hal GRCh38" in 0.0403 seconds and 8.1 Mi memory with job-memory 38.6 Gi. Percent utilization: 0.02057
cactus_consolidated(chr3): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chr3): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chr3): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chr3): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
Issued job 'export_vg' kind-export_vg/instance-5uiloqdp v1 with job batch system ID: 2735 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr7): Ran cactus bar (use poa:1), 1353 seconds have elapsed
cactus_consolidated(chr4): Starting to build the reference for flower 0, with 2 stubs and 32 chains and 36 nodes in the flowers tangle
cactus_consolidated(chr4): The score of the initial solution is 33445857315.031269/4 out of a max possible 33550412811.252617
cactus_consolidated(chr4): The score of the solution after permutation sampling is 33460394871.405281/3 after 10 rounds of greedy permutation out of a max possible 33550412811.252617
cactus_consolidated(chr4): The score of the final reference solution is 33460394871.405281/4 after 100 rounds of greedy nudging out of a max possible 33550412811.252617
cactus_consolidated(chr7): There are 10 layers in the flowers hierarchy
cactus_consolidated(chr7): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr7): Chose reference event 2: Anc0
cactus_consolidated(chr5): In the 3 layer there are 29639 flowers in the flowers hierarchy
cactus_consolidated(chr7): For flower: 0 we have 0 nodes for: 358546 ends, 17856 chains, 0 stubs and 153968 blocks
cactus_consolidated(chr3): In the 1 layer there are 198469 flowers in the flowers hierarchy
cactus_consolidated(chr5): In the 4 layer there are 12564 flowers in the flowers hierarchy
cactus_consolidated(chr16): Dumped sequences for hal file, 1426 seconds have elapsed
cactus_consolidated(chr5): In the 5 layer there are 5705 flowers in the flowers hierarchy
cactus_consolidated(chr5): In the 6 layer there are 1856 flowers in the flowers hierarchy
cactus_consolidated(chr5): In the 7 layer there are 612 flowers in the flowers hierarchy
cactus_consolidated(chr5): In the 8 layer there are 139 flowers in the flowers hierarchy
cactus_consolidated(chr5): In the 9 layer there are 23 flowers in the flowers hierarchy
cactus_consolidated(chr5): In the 10 layer there are 7 flowers in the flowers hierarchy
cactus_consolidated(chr5): Ran cactus make reference, 1395 seconds have elapsed
cactus_consolidated(chr16): Dumped reference sequences, 1428 seconds have elapsed
cactus_consolidated(chr16): Cactus consolidated is done!, 1428 seconds have elapsed
cactus_consolidated(chr3): In the 2 layer there are 219023 flowers in the flowers hierarchy
2023-07-05 14:13:47.561036: Successfully ran cactus_consolidated(chr16): "cactus_consolidated --sequences 'GRCh38 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/GRCh38.fa HG00438.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00438.1.fa HG00438.2 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00438.2.fa HG00621.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00621.1.fa HG00621.2 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00621.2.fa HG00673.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00673.1.fa HG00673.2 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00673.2.fa HG00733.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00733.1.fa HG00733.2 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00733.2.fa HG00735.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00735.1.fa HG00735.2 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00735.2.fa HG00741.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00741.1.fa HG00741.2 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/HG00741.2.fa HG01071.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/H <...> 55f1a1fc324d5464836c/585a/0ed0/tmp5v_g_dry/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 1428.8596 seconds and 53.2 Gi memory with job-memory 404.4 Gi. Percent utilization: 13.14
cactus_consolidated(chr7): Building a matching for 0 stub nodes in the top level problem from 50610 total stubs of which 35712 attached , 358546 total ends, 17856 chains, 153968 blocks 171824 groups and 25305 sequences
cactus_consolidated(chr4): In the 1 layer there are 201101 flowers in the flowers hierarchy
cactus_consolidated(chr4): In the 2 layer there are 224346 flowers in the flowers hierarchy
Issued job 'export_vg' kind-export_vg/instance-iof_ct2p v1 with job batch system ID: 2736 and disk: 6.1 Gi, memory: 122.8 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 14:14:00.928942: Successfully ran: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/65a8/4bc0/tmp2i1gxpoq/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/65a8/4bc0/tmp2i1gxpoq/Anc0.hal.fa '(GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1 <...> ,_MINIGRAPH_:0.025)Anc0;' /data/tmp/9eeeec3d467250f1999ba98b3759d207/65a8/4bc0/tmp2i1gxpoq/Anc0.hal --inMemory" in 335.2901 seconds and 5.3 Gi memory with job-memory 41.6 Gi. Percent utilization: 12.7
2023-07-05 14:14:00.930290: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/65a8/4bc0/tmp2i1gxpoq/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
2023-07-05 14:14:00.934564: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/65a8/4bc0/tmp2i1gxpoq/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.0035 seconds and 5.9 Mi memory
2023-07-05 14:14:00.938934: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/65a8/4bc0/tmp2i1gxpoq/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 14:14:00.942697: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/65a8/4bc0/tmp2i1gxpoq/Anc0.hal CACTUS_CONFIG 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 <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0029 seconds and 5.9 Mi memory
2023-07-05 14:14:00.942900: Running the command: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/65a8/4bc0/tmp2i1gxpoq/Anc0.hal GRCh38"
2023-07-05 14:14:00.989472: Successfully ran: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/65a8/4bc0/tmp2i1gxpoq/Anc0.hal GRCh38" in 0.0459 seconds and 8.2 Mi memory with job-memory 41.6 Gi. Percent utilization: 0.01927
cactus_consolidated(chrX): Ran cactus make reference bottom up coordinates, 1383 seconds have elapsed
cactus_consolidated(chrX): Ran cactus make reference top down coordinates, 1384 seconds have elapsed
Got message from job at time 07-05-2023 14:14:03: Ran cactus consolidated okay
cactus_consolidated(chr12): Ran cactus make reference bottom up coordinates, 1486 seconds have elapsed
Issued job 'export_hal' kind-export_hal/instance-qzcnmoax v1 with job batch system ID: 2737 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr12): Ran cactus make reference top down coordinates, 1487 seconds have elapsed
Issued job 'export_vg' kind-export_vg/instance-tegshou4 v1 with job batch system ID: 2738 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr7): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chr7): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chr7): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chr7): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
cactus_consolidated(chr1): Ran cactus caf, 1366 seconds have elapsed
cactus_consolidated(chr2): Ran cactus caf, 1401 seconds have elapsed
cactus_consolidated(chr3): In the 3 layer there are 20940 flowers in the flowers hierarchy
cactus_consolidated(chr7): In the 1 layer there are 171824 flowers in the flowers hierarchy
cactus_consolidated(chr3): In the 4 layer there are 5842 flowers in the flowers hierarchy
cactus_consolidated(chr3): In the 5 layer there are 1551 flowers in the flowers hierarchy
cactus_consolidated(chr3): In the 6 layer there are 871 flowers in the flowers hierarchy
cactus_consolidated(chr3): In the 7 layer there are 398 flowers in the flowers hierarchy
cactus_consolidated(chr3): In the 8 layer there are 92 flowers in the flowers hierarchy
cactus_consolidated(chr3): In the 9 layer there are 27 flowers in the flowers hierarchy
cactus_consolidated(chr3): In the 10 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr3): Ran cactus make reference, 1416 seconds have elapsed
cactus_consolidated(chr7): In the 2 layer there are 197978 flowers in the flowers hierarchy
cactus_consolidated(chr4): In the 3 layer there are 29905 flowers in the flowers hierarchy
Issued job 'export_hal' kind-export_hal/instance-e01n73bl v1 with job batch system ID: 2739 and disk: 27.9 Gi, memory: 46.6 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_vg' kind-export_vg/instance-ily5crqw v1 with job batch system ID: 2740 and disk: 6.8 Gi, memory: 135.9 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr4): In the 4 layer there are 11096 flowers in the flowers hierarchy
cactus_consolidated(chr4): In the 5 layer there are 4046 flowers in the flowers hierarchy
cactus_consolidated(chr4): In the 6 layer there are 1598 flowers in the flowers hierarchy
cactus_consolidated(chr4): In the 7 layer there are 586 flowers in the flowers hierarchy
cactus_consolidated(chr4): In the 8 layer there are 193 flowers in the flowers hierarchy
cactus_consolidated(chr4): In the 9 layer there are 47 flowers in the flowers hierarchy
cactus_consolidated(chr4): In the 10 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr4): Ran cactus make reference, 1467 seconds have elapsed
2023-07-05 14:14:32.767984: Running the command: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/d5a1/62eb/tmppe5u8hyj/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
cactus_consolidated(chr10): Ran cactus make reference bottom up coordinates, 1576 seconds have elapsed
cactus_consolidated(chr10): Ran cactus make reference top down coordinates, 1577 seconds have elapsed
cactus_consolidated(chrX): Ran cactus to hal stage, 1425 seconds have elapsed
cactus_consolidated(chr11): Ran cactus make reference bottom up coordinates, 1514 seconds have elapsed
cactus_consolidated(chr11): Ran cactus make reference top down coordinates, 1516 seconds have elapsed
cactus_consolidated(chr7): In the 3 layer there are 44102 flowers in the flowers hierarchy
cactus_consolidated(chr7): In the 4 layer there are 12200 flowers in the flowers hierarchy
cactus_consolidated(chr12): Ran cactus to hal stage, 1542 seconds have elapsed
cactus_consolidated(chr7): In the 5 layer there are 3411 flowers in the flowers hierarchy
cactus_consolidated(chr7): In the 6 layer there are 1042 flowers in the flowers hierarchy
cactus_consolidated(chr7): In the 7 layer there are 179 flowers in the flowers hierarchy
cactus_consolidated(chr7): In the 8 layer there are 20 flowers in the flowers hierarchy
cactus_consolidated(chr7): In the 9 layer there are 2 flowers in the flowers hierarchy
cactus_consolidated(chr7): Ran cactus make reference, 1434 seconds have elapsed
2023-07-05 14:15:04.671117: Running the command: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/cbfa/428f/tmpkh_blu1h/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
cactus_consolidated(chrX): Dumped sequences for hal file, 1450 seconds have elapsed
cactus_consolidated(chrX): Dumped reference sequences, 1451 seconds have elapsed
cactus_consolidated(chrX): Cactus consolidated is done!, 1451 seconds have elapsed
2023-07-05 14:15:10.733520: Successfully ran cactus_consolidated(chrX): "cactus_consolidated --sequences 'GRCh38 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/GRCh38.fa HG00438.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00438.1.fa HG00438.2 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00438.2.fa HG00621.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00621.1.fa HG00621.2 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00621.2.fa HG00673.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00673.1.fa HG00673.2 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00673.2.fa HG00733.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00733.1.fa HG00733.2 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00733.2.fa HG00735.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00735.1.fa HG00735.2 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00735.2.fa HG00741.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00741.1.fa HG00741.2 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG00741.2.fa HG01071.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/HG <...> 5e69a78eee6ad1fdd0e6/375b/3866/tmpm481_yyh/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 1452.1596 seconds and 77.6 Gi memory with job-memory 476.8 Gi. Percent utilization: 16.27
2023-07-05 14:15:21.945226: Running the command: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/a47c/beb5/tmp3iy64787/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/a47c/beb5/tmp3iy64787/Anc0.hal.fa (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098 <...> A20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/9eeeec3d467250f1999ba98b3759d207/a47c/beb5/tmp3iy64787/Anc0.hal --inMemory"
cactus_consolidated(chr10): Ran cactus to hal stage, 1629 seconds have elapsed
cactus_consolidated(chr12): Dumped sequences for hal file, 1568 seconds have elapsed
cactus_consolidated(chr12): Dumped reference sequences, 1569 seconds have elapsed
cactus_consolidated(chr12): Cactus consolidated is done!, 1569 seconds have elapsed
2023-07-05 14:15:28.927446: Successfully ran cactus_consolidated(chr12): "cactus_consolidated --sequences 'GRCh38 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/GRCh38.fa HG00438.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00438.1.fa HG00438.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00438.2.fa HG00621.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00621.1.fa HG00621.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00621.2.fa HG00673.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00673.1.fa HG00673.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00673.2.fa HG00733.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00733.1.fa HG00733.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00733.2.fa HG00735.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00735.1.fa HG00735.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00735.2.fa HG00741.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00741.1.fa HG00741.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/HG00741.2.fa HG01071.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/H <...> 5514ac396e74254b92ca/1a56/4963/tmp9w2tim1r/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 1570.6294 seconds and 43.9 Gi memory with job-memory 476.8 Gi. Percent utilization: 9.202
Got message from job at time 07-05-2023 14:15:32: Ran cactus consolidated okay
Issued job 'export_hal' kind-export_hal/instance-g4r5w7rx v1 with job batch system ID: 2741 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr11): Ran cactus to hal stage, 1567 seconds have elapsed
Got message from job at time 07-05-2023 14:15:49: Ran cactus consolidated okay
Issued job 'export_hal' kind-export_hal/instance-7h__484r v1 with job batch system ID: 2742 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_hal' kind-export_hal/instance-umvb9xrt v1 with job batch system ID: 2743 and disk: 36.3 Gi, memory: 60.4 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_hal' kind-export_hal/instance-uiv93xe8 v1 with job batch system ID: 2744 and disk: 39.1 Gi, memory: 65.2 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr10): Dumped sequences for hal file, 1664 seconds have elapsed
cactus_consolidated(chr10): Dumped reference sequences, 1665 seconds have elapsed
cactus_consolidated(chr10): Cactus consolidated is done!, 1665 seconds have elapsed
2023-07-05 14:16:04.078801: Successfully ran cactus_consolidated(chr10): "cactus_consolidated --sequences 'GRCh38 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/GRCh38.fa HG00438.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00438.1.fa HG00438.2 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00438.2.fa HG00621.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00621.1.fa HG00621.2 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00621.2.fa HG00673.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00673.1.fa HG00673.2 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00673.2.fa HG00733.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00733.1.fa HG00733.2 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00733.2.fa HG00735.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00735.1.fa HG00735.2 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00735.2.fa HG00741.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00741.1.fa HG00741.2 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/HG00741.2.fa HG01071.1 /data/tmp/9fd0f61929a456269b41669e7d9612f5/7246/b79f/tmp81px0rc4/H <...> 56269b41669e7d9612f5/7246/b79f/tmp81px0rc4/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 1666.1635 seconds and 46.1 Gi memory with job-memory 476.8 Gi. Percent utilization: 9.677
cactus_consolidated(chr11): Dumped sequences for hal file, 1597 seconds have elapsed
cactus_consolidated(chr11): Dumped reference sequences, 1598 seconds have elapsed
cactus_consolidated(chr11): Cactus consolidated is done!, 1598 seconds have elapsed
cactus_consolidated(chr1): Ran extended flowers ready for bar, 1486 seconds have elapsed
2023-07-05 14:16:08.659772: Successfully ran cactus_consolidated(chr11): "cactus_consolidated --sequences 'GRCh38 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/GRCh38.fa HG00438.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00438.1.fa HG00438.2 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00438.2.fa HG00621.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00621.1.fa HG00621.2 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00621.2.fa HG00673.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00673.1.fa HG00673.2 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00673.2.fa HG00733.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00733.1.fa HG00733.2 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00733.2.fa HG00735.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00735.1.fa HG00735.2 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00735.2.fa HG00741.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00741.1.fa HG00741.2 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/HG00741.2.fa HG01071.1 /data/tmp/e41d97042ffa55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/H <...> 55f1a1fc324d5464836c/72cd/a348/tmpg2wvktvl/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 1599.0642 seconds and 40.2 Gi memory with job-memory 476.8 Gi. Percent utilization: 8.428
cactus_consolidated(chr2): Ran extended flowers ready for bar, 1527 seconds have elapsed
Got message from job at time 07-05-2023 14:16:31: Ran cactus consolidated okay
Issued job 'export_hal' kind-export_hal/instance-zj61eu38 v1 with job batch system ID: 2745 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 14:16:35: Ran cactus consolidated okay
Issued job 'export_hal' kind-export_hal/instance-a4u6f0eb v1 with job batch system ID: 2746 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 14:16:52.385791: Successfully ran: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/50bc/de94/tmp3xi9y6wm/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/50bc/de94/tmp3xi9y6wm/Anc0.hal.fa '(GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1 <...> _MINIGRAPH_:0.025)Anc0;' /data/tmp/9eeeec3d467250f1999ba98b3759d207/50bc/de94/tmp3xi9y6wm/Anc0.hal --inMemory" in 333.9255 seconds and 5.4 Gi memory with job-memory 41.7 Gi. Percent utilization: 13.05
2023-07-05 14:16:52.387243: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/50bc/de94/tmp3xi9y6wm/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
2023-07-05 14:16:52.395000: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/50bc/de94/tmp3xi9y6wm/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.0068 seconds and 5.9 Mi memory
2023-07-05 14:16:52.399659: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/50bc/de94/tmp3xi9y6wm/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 14:16:52.403890: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/50bc/de94/tmp3xi9y6wm/Anc0.hal CACTUS_CONFIG PD94bWwgdmVyc2lvbj0iMS4wIiA/Pgo8Y2FjdHVzV29ya2Zsb3dDb25maWcgZGlzdGFuY2VUb0FkZFRvUm9vdEFsaWdubWVudD0iMC4xIj4KCTxjb25zdGFudHMgZGVmYXVsdE1lbW9yeT0iMzUwMDAwMDAwMCIgZGVmYXVsdE92ZXJsYXJnZU1lbW9yeT0iMzUwMDAwMDAwMCIgZGVmYXVsdENwdT0iMSIgZGVmYXVsdE92ZXJsYXJnZUNwdT0iMSI+CgkJICAKCQk8ZGl2ZXJnZW5jZXMgdXNlRGVmYXVsdD0iMCIgb25lPSIwLjEiIHR3bz0iMC4xNSIgdGhyZWU9IjAuMiIgZm91cj0iMC4yNSIgZml2ZT0iMC4zNSIvPgoJPC9jb25zdGFudHM+Cgk8cHJlcHJvY2Vzc29yIG1lbW9yeT0iMjAwMDAwMDAwMCIgcHJlcHJvY2Vzc0pvYj0iY3V0SGVhZGVycyIgY3V0QmVmb3JlPSIiIGN1dEFmdGVyPSIgICIgYWN0aXZlPSIxIi8+Cgk8cHJlcHJvY2Vzc29yIG1lbW9yeT0iMjAwMDAwMDAwMCIgcHJlcHJvY2Vzc0pvYj0iY2hlY2tVbmlxdWVIZWFkZXJzIiBjaGVja0Fzc2VtYmx5SHViPSIxIiBhY3RpdmU9IjEiLz4KCTxwcmVwcm9jZXNzb3IgdW5tYXNrPSIwIiBjaHVua1NpemU9IjEwMDAwMDAwIiBwcm9wb3J0aW9uVG9TYW1wbGU9IjAuMiIgbWVtb3J5PSIyMDAwMDAwMDAwIiBwcmVwcm9jZXNzSm9iPSJsYXN0elJlcGVhdE1hc2siIG1pblBlcmlvZD0iNTAiIGxhc3R6T3B0cz0iLS1zdGVwPTMgLS1hbWJpZ3VvdXM9aXVwYWMsMTAwLDEwMCAtLXVuZ2FwcGVkIC0tcXVlcnloc3BsaW1pdD1rZWVwLG5vd2FybjoxNTAwIiBncHU9IjAiIGFjdGl2ZT0iMSIvPgoJPHByZXByb2Nlc3NvciB1bm1hc2s9IjEiIG1lbW9yeT0iMjAwMDAwMDAwMCIgcHJlcHJvY2Vzc0pvYj0iZG5hLWJybm4iIGRuYS1icm5uT3B0cz0iLUEiIGFjdGl2ZT0iMCIgYWN0aW9uPSJzb2Z0bWFzayI <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0033 seconds and 5.9 Mi memory
2023-07-05 14:16:52.404068: Running the command: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/50bc/de94/tmp3xi9y6wm/Anc0.hal GRCh38"
2023-07-05 14:16:52.461442: Successfully ran: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/50bc/de94/tmp3xi9y6wm/Anc0.hal GRCh38" in 0.0566 seconds and 8.3 Mi memory with job-memory 41.7 Gi. Percent utilization: 0.01933
Issued job 'export_vg' kind-export_vg/instance-dgffiii8 v1 with job batch system ID: 2747 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 14:16:59.356014: Running the command: "halAppendCactusSubtree /data/tmp/9fd0f61929a456269b41669e7d9612f5/274e/872a/tmpo8wex85x/Anc0.hal.c2h /data/tmp/9fd0f61929a456269b41669e7d9612f5/274e/872a/tmpo8wex85x/Anc0.hal.fa (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098 <...> A20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/9fd0f61929a456269b41669e7d9612f5/274e/872a/tmpo8wex85x/Anc0.hal --inMemory"
2023-07-05 14:17:00.862574: Running the command: "halAppendCactusSubtree /data/tmp/9fd0f61929a456269b41669e7d9612f5/b7ac/6949/tmpqgczr6m9/Anc0.hal.c2h /data/tmp/9fd0f61929a456269b41669e7d9612f5/b7ac/6949/tmpqgczr6m9/Anc0.hal.fa (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098 <...> A20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/9fd0f61929a456269b41669e7d9612f5/b7ac/6949/tmpqgczr6m9/Anc0.hal --inMemory"
Issued job 'export_hal' kind-export_hal/instance-epoo1cy9 v1 with job batch system ID: 2748 and disk: 39.8 Gi, memory: 66.3 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_hal' kind-export_hal/instance-lbktfqr2 v1 with job batch system ID: 2749 and disk: 39.4 Gi, memory: 65.7 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr9): Ran cactus make reference bottom up coordinates, 1633 seconds have elapsed
cactus_consolidated(chr9): Ran cactus make reference top down coordinates, 1635 seconds have elapsed
2023-07-05 14:17:29.284731: Successfully ran: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/8fe5/e4d9/tmpuzsahnt6/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/8fe5/e4d9/tmpuzsahnt6/Anc0.hal.fa '(GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1 <...> _MINIGRAPH_:0.025)Anc0;' /data/tmp/9eeeec3d467250f1999ba98b3759d207/8fe5/e4d9/tmpuzsahnt6/Anc0.hal --inMemory" in 399.9781 seconds and 6.2 Gi memory with job-memory 49.5 Gi. Percent utilization: 12.61
2023-07-05 14:17:29.286279: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/8fe5/e4d9/tmpuzsahnt6/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
2023-07-05 14:17:29.291741: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/8fe5/e4d9/tmpuzsahnt6/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.0046 seconds and 5.9 Mi memory
2023-07-05 14:17:29.296612: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/8fe5/e4d9/tmpuzsahnt6/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 14:17:29.300805: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/8fe5/e4d9/tmpuzsahnt6/Anc0.hal CACTUS_CONFIG 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 <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0033 seconds and 5.9 Mi memory
2023-07-05 14:17:29.301029: Running the command: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/8fe5/e4d9/tmpuzsahnt6/Anc0.hal GRCh38"
2023-07-05 14:17:29.358531: Successfully ran: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/8fe5/e4d9/tmpuzsahnt6/Anc0.hal GRCh38" in 0.0567 seconds and 8.2 Mi memory with job-memory 49.5 Gi. Percent utilization: 0.0162
Issued job 'export_vg' kind-export_vg/instance-2qe0lt1v v1 with job batch system ID: 2750 and disk: 6.7 Gi, memory: 133.4 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_vg' kind-export_vg/instance-fpsojhhq v1 with job batch system ID: 2751 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr9): Ran cactus to hal stage, 1681 seconds have elapsed
2023-07-05 14:17:57.349838: Running the command: "halAppendCactusSubtree /data/tmp/9fd0f61929a456269b41669e7d9612f5/e856/3f53/tmp5xymrka4/Anc0.hal.c2h /data/tmp/9fd0f61929a456269b41669e7d9612f5/e856/3f53/tmp5xymrka4/Anc0.hal.fa (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098 <...> A20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/9fd0f61929a456269b41669e7d9612f5/e856/3f53/tmp5xymrka4/Anc0.hal --inMemory"
2023-07-05 14:17:59.108668: Running the command: "halAppendCactusSubtree /data/tmp/9fd0f61929a456269b41669e7d9612f5/805e/cb71/tmpe4r3f2eh/Anc0.hal.c2h /data/tmp/9fd0f61929a456269b41669e7d9612f5/805e/cb71/tmpe4r3f2eh/Anc0.hal.fa (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098 <...> A20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/9fd0f61929a456269b41669e7d9612f5/805e/cb71/tmpe4r3f2eh/Anc0.hal --inMemory"
Issued job 'export_vg' kind-export_vg/instance-1eddot2l v1 with job batch system ID: 2752 and disk: 8.0 Gi, memory: 159.9 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 14:18:03.085267: Running the command: "hal2vg /data/tmp/9fd0f61929a456269b41669e7d9612f5/50a6/3174/tmpqdped1o8/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
cactus_consolidated(chr9): Dumped sequences for hal file, 1711 seconds have elapsed
cactus_consolidated(chr9): Dumped reference sequences, 1714 seconds have elapsed
cactus_consolidated(chr9): Cactus consolidated is done!, 1714 seconds have elapsed
2023-07-05 14:18:27.485298: Successfully ran cactus_consolidated(chr9): "cactus_consolidated --sequences 'GRCh38 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/GRCh38.fa HG00438.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00438.1.fa HG00438.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00438.2.fa HG00621.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00621.1.fa HG00621.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00621.2.fa HG00673.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00673.1.fa HG00673.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00673.2.fa HG00733.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00733.1.fa HG00733.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00733.2.fa HG00735.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00735.1.fa HG00735.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00735.2.fa HG00741.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00741.1.fa HG00741.2 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG00741.2.fa HG01071.1 /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/HG <...> 5514ac396e74254b92ca/c8ae/529e/tmp2b6_hgh_/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 1716.2949 seconds and 48.2 Gi memory with job-memory 476.8 Gi. Percent utilization: 10.11
2023-07-05 14:18:33.623005: Running the command: "hal2vg /data/tmp/9fd0f61929a456269b41669e7d9612f5/4ff6/4aae/tmp1ocuqa2u/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
2023-07-05 14:18:37.836471: Successfully ran: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/b2a7/2e15/tmph4ez4qm8/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 576.8779 seconds and 11.5 Gi memory with job-memory 64.8 Gi. Percent utilization: 17.7
Got message from job at time 07-05-2023 14:18:51: Ran cactus consolidated okay
Issued job 'export_hal' kind-export_hal/instance-itmo3d2h v1 with job batch system ID: 2753 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_hal' kind-export_hal/instance-7ju_xk2h v1 with job batch system ID: 2754 and disk: 42.6 Gi, memory: 71.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 14:19:35.339414: Successfully ran: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/c228/a869/tmpkpwnm8nz/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/c228/a869/tmpkpwnm8nz/Anc0.hal.fa '(GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1 <...> _MINIGRAPH_:0.025)Anc0;' /data/tmp/9eeeec3d467250f1999ba98b3759d207/c228/a869/tmpkpwnm8nz/Anc0.hal --inMemory" in 378.5553 seconds and 5.8 Gi memory with job-memory 45.9 Gi. Percent utilization: 12.66
2023-07-05 14:19:35.340768: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/c228/a869/tmpkpwnm8nz/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
2023-07-05 14:19:35.344822: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/c228/a869/tmpkpwnm8nz/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.0034 seconds and 5.9 Mi memory
2023-07-05 14:19:35.348704: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/c228/a869/tmpkpwnm8nz/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 14:19:35.352104: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/c228/a869/tmpkpwnm8nz/Anc0.hal CACTUS_CONFIG PD94bWwgdmVyc2lvbj0iMS4wIiA/Pgo8Y2FjdHVzV29ya2Zsb3dDb25maWcgZGlzdGFuY2VUb0FkZFRvUm9vdEFsaWdubWVudD0iMC4xIj4KCTxjb25zdGFudHMgZGVmYXVsdE1lbW9yeT0iMzUwMDAwMDAwMCIgZGVmYXVsdE92ZXJsYXJnZU1lbW9yeT0iMzUwMDAwMDAwMCIgZGVmYXVsdENwdT0iMSIgZGVmYXVsdE92ZXJsYXJnZUNwdT0iMSI+CgkJICAKCQk8ZGl2ZXJnZW5jZXMgdXNlRGVmYXVsdD0iMCIgb25lPSIwLjEiIHR3bz0iMC4xNSIgdGhyZWU9IjAuMiIgZm91cj0iMC4yNSIgZml2ZT0iMC4zNSIvPgoJPC9jb25zdGFudHM+Cgk8cHJlcHJvY2Vzc29yIG1lbW9yeT0iMjAwMDAwMDAwMCIgcHJlcHJvY2Vzc0pvYj0iY3V0SGVhZGVycyIgY3V0QmVmb3JlPSIiIGN1dEFmdGVyPSIgICIgYWN0aXZlPSIxIi8+Cgk8cHJlcHJvY2Vzc29yIG1lbW9yeT0iMjAwMDAwMDAwMCIgcHJlcHJvY2Vzc0pvYj0iY2hlY2tVbmlxdWVIZWFkZXJzIiBjaGVja0Fzc2VtYmx5SHViPSIxIiBhY3RpdmU9IjEiLz4KCTxwcmVwcm9jZXNzb3IgdW5tYXNrPSIwIiBjaHVua1NpemU9IjEwMDAwMDAwIiBwcm9wb3J0aW9uVG9TYW1wbGU9IjAuMiIgbWVtb3J5PSIyMDAwMDAwMDAwIiBwcmVwcm9jZXNzSm9iPSJsYXN0elJlcGVhdE1hc2siIG1pblBlcmlvZD0iNTAiIGxhc3R6T3B0cz0iLS1zdGVwPTMgLS1hbWJpZ3VvdXM9aXVwYWMsMTAwLDEwMCAtLXVuZ2FwcGVkIC0tcXVlcnloc3BsaW1pdD1rZWVwLG5vd2FybjoxNTAwIiBncHU9IjAiIGFjdGl2ZT0iMSIvPgoJPHByZXByb2Nlc3NvciB1bm1hc2s9IjEiIG1lbW9yeT0iMjAwMDAwMDAwMCIgcHJlcHJvY2Vzc0pvYj0iZG5hLWJybm4iIGRuYS1icm5uT3B0cz0iLUEiIGFjdGl2ZT0iMCIgYWN0aW9uPSJzb2Z0bWFzayI <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0027 seconds and 5.9 Mi memory
2023-07-05 14:19:35.352207: Running the command: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/c228/a869/tmpkpwnm8nz/Anc0.hal GRCh38"
2023-07-05 14:19:35.402478: Successfully ran: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/c228/a869/tmpkpwnm8nz/Anc0.hal GRCh38" in 0.0497 seconds and 8.3 Mi memory with job-memory 45.9 Gi. Percent utilization: 0.0176
Issued job 'export_vg' kind-export_vg/instance-3_au9nxl v1 with job batch system ID: 2755 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 14:19:54.548380: Running the command: "halAppendCactusSubtree /data/tmp/9fd0f61929a456269b41669e7d9612f5/ea54/3641/tmp55qye_mf/Anc0.hal.c2h /data/tmp/9fd0f61929a456269b41669e7d9612f5/ea54/3641/tmp55qye_mf/Anc0.hal.fa (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098 <...> A20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/9fd0f61929a456269b41669e7d9612f5/ea54/3641/tmp55qye_mf/Anc0.hal --inMemory"
Issued job 'export_vg' kind-export_vg/instance-2jwkki3x v1 with job batch system ID: 2756 and disk: 7.4 Gi, memory: 148.9 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr8): Ran cactus make reference bottom up coordinates, 1796 seconds have elapsed
cactus_consolidated(chr8): Ran cactus make reference top down coordinates, 1797 seconds have elapsed
2023-07-05 14:20:32.736075: Running the command: "hal2vg /data/tmp/9fd0f61929a456269b41669e7d9612f5/d9e1/ae66/tmpmbwgodq4/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
cactus_consolidated(chr8): Ran cactus to hal stage, 1852 seconds have elapsed
cactus_consolidated(chr8): Dumped sequences for hal file, 1884 seconds have elapsed
2023-07-05 14:21:29.441629: Successfully ran: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/a47c/beb5/tmp3iy64787/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/a47c/beb5/tmp3iy64787/Anc0.hal.fa '(GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1 <...> _MINIGRAPH_:0.025)Anc0;' /data/tmp/9eeeec3d467250f1999ba98b3759d207/a47c/beb5/tmp3iy64787/Anc0.hal --inMemory" in 367.4951 seconds and 6.1 Gi memory with job-memory 46.6 Gi. Percent utilization: 13.02
2023-07-05 14:21:29.443048: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/a47c/beb5/tmp3iy64787/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
2023-07-05 14:21:29.449013: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/a47c/beb5/tmp3iy64787/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.0052 seconds and 5.9 Mi memory
2023-07-05 14:21:29.453388: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/a47c/beb5/tmp3iy64787/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 14:21:29.457677: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/a47c/beb5/tmp3iy64787/Anc0.hal CACTUS_CONFIG 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 <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0034 seconds and 5.9 Mi memory
2023-07-05 14:21:29.457860: Running the command: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/a47c/beb5/tmp3iy64787/Anc0.hal GRCh38"
2023-07-05 14:21:29.508029: Successfully ran: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/a47c/beb5/tmp3iy64787/Anc0.hal GRCh38" in 0.0495 seconds and 8.1 Mi memory with job-memory 46.6 Gi. Percent utilization: 0.01702
cactus_consolidated(chr8): Dumped reference sequences, 1885 seconds have elapsed
cactus_consolidated(chr8): Cactus consolidated is done!, 1885 seconds have elapsed
2023-07-05 14:21:30.938557: Successfully ran cactus_consolidated(chr8): "cactus_consolidated --sequences 'GRCh38 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/GRCh38.fa HG00438.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00438.1.fa HG00438.2 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00438.2.fa HG00621.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00621.1.fa HG00621.2 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00621.2.fa HG00673.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00673.1.fa HG00673.2 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00673.2.fa HG00733.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00733.1.fa HG00733.2 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00733.2.fa HG00735.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00735.1.fa HG00735.2 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00735.2.fa HG00741.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00741.1.fa HG00741.2 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG00741.2.fa HG01071.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/da2d/af11/tmpl7ges3ol/HG <...> 5a71bc09997943db6609/da2d/af11/tmpl7ges3ol/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 1886.3391 seconds and 49.5 Gi memory with job-memory 476.8 Gi. Percent utilization: 10.38
Issued job 'export_vg' kind-export_vg/instance-jej4b_4m v1 with job batch system ID: 2757 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr6): Ran cactus make reference bottom up coordinates, 1905 seconds have elapsed
cactus_consolidated(chr6): Ran cactus make reference top down coordinates, 1907 seconds have elapsed
Got message from job at time 07-05-2023 14:21:53: Ran cactus consolidated okay
Issued job 'export_hal' kind-export_hal/instance-qn6cha4_ v1 with job batch system ID: 2758 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_vg' kind-export_vg/instance-x7rwgtee v1 with job batch system ID: 2759 and disk: 7.1 Gi, memory: 142.6 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_hal' kind-export_hal/instance-6sdbzabw v1 with job batch system ID: 2760 and disk: 42.6 Gi, memory: 70.9 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 14:22:35.362649: Running the command: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8a/59c3/tmpl1u4ip_k/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
cactus_consolidated(chr6): Ran cactus to hal stage, 1975 seconds have elapsed
2023-07-05 14:23:01.344363: Running the command: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a5c/90cc/tmpvdkg205i/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a5c/90cc/tmpvdkg205i/Anc0.hal.fa (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098 <...> A20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a5c/90cc/tmpvdkg205i/Anc0.hal --inMemory"
cactus_consolidated(chr1): Ran cactus bar (use poa:1), 1907 seconds have elapsed
cactus_consolidated(chr1): There are 9 layers in the flowers hierarchy
cactus_consolidated(chr1): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr1): Chose reference event 2: Anc0
cactus_consolidated(chr1): For flower: 0 we have 0 nodes for: 496928 ends, 22261 chains, 0 stubs and 216187 blocks
cactus_consolidated(chr1): Building a matching for 0 stub nodes in the top level problem from 64554 total stubs of which 44522 attached , 496928 total ends, 22261 chains, 216187 blocks 238448 groups and 32277 sequences
cactus_consolidated(chr6): Dumped sequences for hal file, 2010 seconds have elapsed
cactus_consolidated(chr6): Dumped reference sequences, 2011 seconds have elapsed
cactus_consolidated(chr6): Cactus consolidated is done!, 2011 seconds have elapsed
2023-07-05 14:23:30.212686: Successfully ran cactus_consolidated(chr6): "cactus_consolidated --sequences 'GRCh38 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/GRCh38.fa HG00438.1 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00438.1.fa HG00438.2 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00438.2.fa HG00621.1 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00621.1.fa HG00621.2 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00621.2.fa HG00673.1 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00673.1.fa HG00673.2 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00673.2.fa HG00733.1 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00733.1.fa HG00733.2 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00733.2.fa HG00735.1 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00735.1.fa HG00735.2 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00735.2.fa HG00741.1 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00741.1.fa HG00741.2 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG00741.2.fa HG01071.1 /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/HG <...> 594cb143ddcde269dd7b/2d61/27a4/tmp5refwp9z/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 2012.8793 seconds and 57.3 Gi memory with job-memory 476.8 Gi. Percent utilization: 12.01
cactus_consolidated(chr2): Ran cactus bar (use poa:1), 1964 seconds have elapsed
cactus_consolidated(chr2): There are 9 layers in the flowers hierarchy
cactus_consolidated(chr2): In the 0 layer there are 1 flowers in the flowers hierarchy
cactus_consolidated(chr2): Chose reference event 2: Anc0
cactus_consolidated(chr2): For flower: 0 we have 0 nodes for: 501502 ends, 19938 chains, 0 stubs and 222120 blocks
cactus_consolidated(chr1): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chr1): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chr1): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chr1): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
cactus_consolidated(chr2): Building a matching for 0 stub nodes in the top level problem from 57262 total stubs of which 39876 attached , 501502 total ends, 19938 chains, 222120 blocks 242058 groups and 28631 sequences
Got message from job at time 07-05-2023 14:23:55: Ran cactus consolidated okay
Issued job 'export_hal' kind-export_hal/instance-blorkcrd v1 with job batch system ID: 2761 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr1): In the 1 layer there are 238448 flowers in the flowers hierarchy
2023-07-05 14:24:07.616598: Successfully ran: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/1b57/7401/tmp4ldpzwap/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 845.4058 seconds and 16.1 Gi memory with job-memory 104.4 Gi. Percent utilization: 15.38
cactus_consolidated(chr1): In the 2 layer there are 274391 flowers in the flowers hierarchy
cactus_consolidated(chr7): Ran cactus make reference bottom up coordinates, 1988 seconds have elapsed
cactus_consolidated(chr7): Ran cactus make reference top down coordinates, 1991 seconds have elapsed
cactus_consolidated(chr5): Ran cactus make reference bottom up coordinates, 2032 seconds have elapsed
cactus_consolidated(chr5): Ran cactus make reference top down coordinates, 2035 seconds have elapsed
cactus_consolidated(chr2): Starting to build the reference for flower 0, with 0 stubs and 0 chains and 0 nodes in the flowers tangle
cactus_consolidated(chr2): The score of the initial solution is 0.000000/0 out of a max possible 0.000000
cactus_consolidated(chr2): The score of the solution after permutation sampling is 0.000000/0 after 10 rounds of greedy permutation out of a max possible 0.000000
cactus_consolidated(chr2): The score of the final reference solution is 0.000000/0 after 100 rounds of greedy nudging out of a max possible 0.000000
Issued job 'export_hal' kind-export_hal/instance-8pp_21es v1 with job batch system ID: 2762 and disk: 49.6 Gi, memory: 82.7 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr2): In the 1 layer there are 242058 flowers in the flowers hierarchy
cactus_consolidated(chr1): In the 3 layer there are 55434 flowers in the flowers hierarchy
cactus_consolidated(chr2): In the 2 layer there are 273904 flowers in the flowers hierarchy
cactus_consolidated(chr1): In the 4 layer there are 17382 flowers in the flowers hierarchy
cactus_consolidated(chr1): In the 5 layer there are 5078 flowers in the flowers hierarchy
2023-07-05 14:24:54.535780: Successfully ran: "halAppendCactusSubtree /data/tmp/9fd0f61929a456269b41669e7d9612f5/274e/872a/tmpo8wex85x/Anc0.hal.c2h /data/tmp/9fd0f61929a456269b41669e7d9612f5/274e/872a/tmpo8wex85x/Anc0.hal.fa '(GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1 <...> ,_MINIGRAPH_:0.025)Anc0;' /data/tmp/9fd0f61929a456269b41669e7d9612f5/274e/872a/tmpo8wex85x/Anc0.hal --inMemory" in 475.1784 seconds and 7.5 Gi memory with job-memory 60.4 Gi. Percent utilization: 12.5
2023-07-05 14:24:54.537130: Running the command: "halSetMetadata /data/tmp/9fd0f61929a456269b41669e7d9612f5/274e/872a/tmpo8wex85x/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
2023-07-05 14:24:54.570586: Successfully ran: "halSetMetadata /data/tmp/9fd0f61929a456269b41669e7d9612f5/274e/872a/tmpo8wex85x/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.0327 seconds and 5.5 Mi memory
2023-07-05 14:24:54.574868: Running the command: "halSetMetadata /data/tmp/9fd0f61929a456269b41669e7d9612f5/274e/872a/tmpo8wex85x/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 14:24:54.578528: Successfully ran: "halSetMetadata /data/tmp/9fd0f61929a456269b41669e7d9612f5/274e/872a/tmpo8wex85x/Anc0.hal CACTUS_CONFIG 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 <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0029 seconds and 5.9 Mi memory
2023-07-05 14:24:54.578702: Running the command: "halRemoveDupes /data/tmp/9fd0f61929a456269b41669e7d9612f5/274e/872a/tmpo8wex85x/Anc0.hal GRCh38"
2023-07-05 14:24:54.673194: Successfully ran: "halRemoveDupes /data/tmp/9fd0f61929a456269b41669e7d9612f5/274e/872a/tmpo8wex85x/Anc0.hal GRCh38" in 0.0938 seconds and 8.3 Mi memory with job-memory 60.4 Gi. Percent utilization: 0.01339
cactus_consolidated(chr1): In the 6 layer there are 1112 flowers in the flowers hierarchy
cactus_consolidated(chr1): In the 7 layer there are 222 flowers in the flowers hierarchy
cactus_consolidated(chr1): In the 8 layer there are 34 flowers in the flowers hierarchy
cactus_consolidated(chr1): Ran cactus make reference, 2012 seconds have elapsed
Issued job 'export_vg' kind-export_vg/instance-r87oa5t9 v1 with job batch system ID: 2763 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr7): Ran cactus to hal stage, 2055 seconds have elapsed
Issued job 'export_vg' kind-export_vg/instance-wdj2c68o v1 with job batch system ID: 2764 and disk: 9.9 Gi, memory: 197.6 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 14:25:32.844205: Running the command: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/398a/251b/tmptwike2q2/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/398a/251b/tmptwike2q2/Anc0.hal.fa (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098 <...> A20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/9eeeec3d467250f1999ba98b3759d207/398a/251b/tmptwike2q2/Anc0.hal --inMemory"
cactus_consolidated(chr5): Ran cactus to hal stage, 2102 seconds have elapsed
2023-07-05 14:25:35.919737: Successfully ran: "halAppendCactusSubtree /data/tmp/9fd0f61929a456269b41669e7d9612f5/b7ac/6949/tmpqgczr6m9/Anc0.hal.c2h /data/tmp/9fd0f61929a456269b41669e7d9612f5/b7ac/6949/tmpqgczr6m9/Anc0.hal.fa '(GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1 <...> _MINIGRAPH_:0.025)Anc0;' /data/tmp/9fd0f61929a456269b41669e7d9612f5/b7ac/6949/tmpqgczr6m9/Anc0.hal --inMemory" in 515.0559 seconds and 8.2 Gi memory with job-memory 65.2 Gi. Percent utilization: 12.57
2023-07-05 14:25:35.921090: Running the command: "halSetMetadata /data/tmp/9fd0f61929a456269b41669e7d9612f5/b7ac/6949/tmpqgczr6m9/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
2023-07-05 14:25:35.925158: Successfully ran: "halSetMetadata /data/tmp/9fd0f61929a456269b41669e7d9612f5/b7ac/6949/tmpqgczr6m9/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.0034 seconds and 5.9 Mi memory
2023-07-05 14:25:35.929110: Running the command: "halSetMetadata /data/tmp/9fd0f61929a456269b41669e7d9612f5/b7ac/6949/tmpqgczr6m9/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 14:25:35.932465: Successfully ran: "halSetMetadata /data/tmp/9fd0f61929a456269b41669e7d9612f5/b7ac/6949/tmpqgczr6m9/Anc0.hal CACTUS_CONFIG 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 <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0027 seconds and 5.9 Mi memory
2023-07-05 14:25:35.932638: Running the command: "halRemoveDupes /data/tmp/9fd0f61929a456269b41669e7d9612f5/b7ac/6949/tmpqgczr6m9/Anc0.hal GRCh38"
2023-07-05 14:25:36.001925: Successfully ran: "halRemoveDupes /data/tmp/9fd0f61929a456269b41669e7d9612f5/b7ac/6949/tmpqgczr6m9/Anc0.hal GRCh38" in 0.0687 seconds and 8.5 Mi memory with job-memory 65.2 Gi. Percent utilization: 0.0127
cactus_consolidated(chr2): In the 3 layer there are 47755 flowers in the flowers hierarchy
cactus_consolidated(chr2): In the 4 layer there are 14100 flowers in the flowers hierarchy
cactus_consolidated(chr2): In the 5 layer there are 3902 flowers in the flowers hierarchy
cactus_consolidated(chr2): In the 6 layer there are 893 flowers in the flowers hierarchy
cactus_consolidated(chr2): In the 7 layer there are 170 flowers in the flowers hierarchy
cactus_consolidated(chr2): In the 8 layer there are 21 flowers in the flowers hierarchy
cactus_consolidated(chr2): Ran cactus make reference, 2090 seconds have elapsed
Issued job 'export_vg' kind-export_vg/instance-oahpu_px v1 with job batch system ID: 2765 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr3): Ran cactus make reference bottom up coordinates, 2102 seconds have elapsed
cactus_consolidated(chr3): Ran cactus make reference top down coordinates, 2104 seconds have elapsed
cactus_consolidated(chr4): Ran cactus make reference bottom up coordinates, 2145 seconds have elapsed
2023-07-05 14:25:51.538172: Successfully ran: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/5211/4649/tmp5hrcz37o/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 859.5475 seconds and 17.1 Gi memory with job-memory 97.7 Gi. Percent utilization: 17.54
cactus_consolidated(chr4): Ran cactus make reference top down coordinates, 2148 seconds have elapsed
cactus_consolidated(chr7): Dumped sequences for hal file, 2092 seconds have elapsed
cactus_consolidated(chr7): Dumped reference sequences, 2093 seconds have elapsed
cactus_consolidated(chr7): Cactus consolidated is done!, 2093 seconds have elapsed
Issued job 'export_vg' kind-export_vg/instance-v6jlhidl v1 with job batch system ID: 2766 and disk: 10.6 Gi, memory: 212.1 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 14:26:01.270628: Successfully ran cactus_consolidated(chr7): "cactus_consolidated --sequences 'GRCh38 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/GRCh38.fa HG00438.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00438.1.fa HG00438.2 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00438.2.fa HG00621.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00621.1.fa HG00621.2 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00621.2.fa HG00673.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00673.1.fa HG00673.2 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00673.2.fa HG00733.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00733.1.fa HG00733.2 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00733.2.fa HG00735.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00735.1.fa HG00735.2 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00735.2.fa HG00741.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00741.1.fa HG00741.2 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG00741.2.fa HG01071.1 /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/HG <...> 5b4fa4aab14527c65d50/ac55/e096/tmpbjb_1n5a/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 2095.0882 seconds and 67.6 Gi memory with job-memory 476.8 Gi. Percent utilization: 14.18
2023-07-05 14:26:05.185099: Running the command: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/4f2b/3408/tmpb7hmz401/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
cactus_consolidated(chr5): Dumped sequences for hal file, 2143 seconds have elapsed
cactus_consolidated(chr5): Dumped reference sequences, 2144 seconds have elapsed
cactus_consolidated(chr5): Cactus consolidated is done!, 2144 seconds have elapsed
2023-07-05 14:26:17.487563: Successfully ran cactus_consolidated(chr5): "cactus_consolidated --sequences 'GRCh38 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/GRCh38.fa HG00438.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00438.1.fa HG00438.2 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00438.2.fa HG00621.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00621.1.fa HG00621.2 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00621.2.fa HG00673.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00673.1.fa HG00673.2 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00673.2.fa HG00733.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00733.1.fa HG00733.2 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00733.2.fa HG00735.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00735.1.fa HG00735.2 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00735.2.fa HG00741.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00741.1.fa HG00741.2 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG00741.2.fa HG01071.1 /data/tmp/27bafead6d355b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/HG <...> 5b998e86173ec3f6a1a4/708b/db93/tmpr8fny4n6/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 2146.2485 seconds and 65.2 Gi memory with job-memory 476.8 Gi. Percent utilization: 13.67
Got message from job at time 07-05-2023 14:26:27: Ran cactus consolidated okay
Issued job 'export_hal' kind-export_hal/instance-3jiob8a_ v1 with job batch system ID: 2767 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 14:26:36.188191: Successfully ran: "halAppendCactusSubtree /data/tmp/9fd0f61929a456269b41669e7d9612f5/e856/3f53/tmp5xymrka4/Anc0.hal.c2h /data/tmp/9fd0f61929a456269b41669e7d9612f5/e856/3f53/tmp5xymrka4/Anc0.hal.fa '(GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1 <...> _MINIGRAPH_:0.025)Anc0;' /data/tmp/9fd0f61929a456269b41669e7d9612f5/e856/3f53/tmp5xymrka4/Anc0.hal --inMemory" in 518.8373 seconds and 8.2 Gi memory with job-memory 65.7 Gi. Percent utilization: 12.47
2023-07-05 14:26:36.189480: Running the command: "halSetMetadata /data/tmp/9fd0f61929a456269b41669e7d9612f5/e856/3f53/tmp5xymrka4/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
2023-07-05 14:26:36.195068: Successfully ran: "halSetMetadata /data/tmp/9fd0f61929a456269b41669e7d9612f5/e856/3f53/tmp5xymrka4/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.0049 seconds and 5.9 Mi memory
2023-07-05 14:26:36.197316: Running the command: "halSetMetadata /data/tmp/9fd0f61929a456269b41669e7d9612f5/e856/3f53/tmp5xymrka4/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 14:26:36.200514: Successfully ran: "halSetMetadata /data/tmp/9fd0f61929a456269b41669e7d9612f5/e856/3f53/tmp5xymrka4/Anc0.hal CACTUS_CONFIG 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 <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0027 seconds and 5.9 Mi memory
2023-07-05 14:26:36.200624: Running the command: "halRemoveDupes /data/tmp/9fd0f61929a456269b41669e7d9612f5/e856/3f53/tmp5xymrka4/Anc0.hal GRCh38"
2023-07-05 14:26:36.267453: Successfully ran: "halRemoveDupes /data/tmp/9fd0f61929a456269b41669e7d9612f5/e856/3f53/tmp5xymrka4/Anc0.hal GRCh38" in 0.0663 seconds and 8.3 Mi memory with job-memory 65.7 Gi. Percent utilization: 0.0123
2023-07-05 14:26:36.820029: Running the command: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/6059/0a13/tmp1jc1bg5h/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
2023-07-05 14:26:42.961098: Successfully ran: "halAppendCactusSubtree /data/tmp/9fd0f61929a456269b41669e7d9612f5/805e/cb71/tmpe4r3f2eh/Anc0.hal.c2h /data/tmp/9fd0f61929a456269b41669e7d9612f5/805e/cb71/tmpe4r3f2eh/Anc0.hal.fa '(GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1 <...> _MINIGRAPH_:0.025)Anc0;' /data/tmp/9fd0f61929a456269b41669e7d9612f5/805e/cb71/tmpe4r3f2eh/Anc0.hal --inMemory" in 523.8513 seconds and 8.4 Gi memory with job-memory 66.3 Gi. Percent utilization: 12.64
2023-07-05 14:26:42.962223: Running the command: "halSetMetadata /data/tmp/9fd0f61929a456269b41669e7d9612f5/805e/cb71/tmpe4r3f2eh/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
2023-07-05 14:26:42.973552: Successfully ran: "halSetMetadata /data/tmp/9fd0f61929a456269b41669e7d9612f5/805e/cb71/tmpe4r3f2eh/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.0107 seconds and 5.9 Mi memory
2023-07-05 14:26:42.975790: Running the command: "halSetMetadata /data/tmp/9fd0f61929a456269b41669e7d9612f5/805e/cb71/tmpe4r3f2eh/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 14:26:42.985375: Successfully ran: "halSetMetadata /data/tmp/9fd0f61929a456269b41669e7d9612f5/805e/cb71/tmpe4r3f2eh/Anc0.hal CACTUS_CONFIG 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 <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0091 seconds and 5.9 Mi memory
2023-07-05 14:26:42.985482: Running the command: "halRemoveDupes /data/tmp/9fd0f61929a456269b41669e7d9612f5/805e/cb71/tmpe4r3f2eh/Anc0.hal GRCh38"
2023-07-05 14:26:43.063162: Successfully ran: "halRemoveDupes /data/tmp/9fd0f61929a456269b41669e7d9612f5/805e/cb71/tmpe4r3f2eh/Anc0.hal GRCh38" in 0.0772 seconds and 8.3 Mi memory with job-memory 66.3 Gi. Percent utilization: 0.01222
Issued job 'export_vg' kind-export_vg/instance-jvi05mk3 v1 with job batch system ID: 2768 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 14:26:50: Ran cactus consolidated okay
Issued job 'export_vg' kind-export_vg/instance-txid3ppj v1 with job batch system ID: 2769 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_hal' kind-export_hal/instance-rb6gyual v1 with job batch system ID: 2770 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_vg' kind-export_vg/instance-pz33mk92 v1 with job batch system ID: 2771 and disk: 10.6 Gi, memory: 212.5 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_vg' kind-export_vg/instance-2pczfzpk v1 with job batch system ID: 2772 and disk: 10.8 Gi, memory: 215.1 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_hal' kind-export_hal/instance-3b682hws v1 with job batch system ID: 2773 and disk: 53.0 Gi, memory: 88.3 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_hal' kind-export_hal/instance-25v0diqs v1 with job batch system ID: 2774 and disk: 47.1 Gi, memory: 78.5 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr3): Ran cactus to hal stage, 2182 seconds have elapsed
cactus_consolidated(chr4): Ran cactus to hal stage, 2241 seconds have elapsed
cactus_consolidated(chr3): Dumped sequences for hal file, 2223 seconds have elapsed
2023-07-05 14:27:45.861796: Running the command: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/a957/251c/tmpinevgead/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
2023-07-05 14:27:45.965256: Running the command: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/9a25/c50d/tmpfrreawjk/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
cactus_consolidated(chr3): Dumped reference sequences, 2224 seconds have elapsed
cactus_consolidated(chr3): Cactus consolidated is done!, 2224 seconds have elapsed
2023-07-05 14:27:48.664713: Successfully ran cactus_consolidated(chr3): "cactus_consolidated --sequences 'GRCh38 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/GRCh38.fa HG00438.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00438.1.fa HG00438.2 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00438.2.fa HG00621.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00621.1.fa HG00621.2 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00621.2.fa HG00673.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00673.1.fa HG00673.2 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00673.2.fa HG00733.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00733.1.fa HG00733.2 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00733.2.fa HG00735.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00735.1.fa HG00735.2 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00735.2.fa HG00741.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00741.1.fa HG00741.2 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG00741.2.fa HG01071.1 /data/tmp/0a9f88a4b0315a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/HG <...> 5a71bc09997943db6609/b0a2/0fd1/tmpw725qvvk/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 2225.7666 seconds and 55.6 Gi memory with job-memory 476.8 Gi. Percent utilization: 11.65
cactus_consolidated(chr4): Dumped sequences for hal file, 2282 seconds have elapsed
cactus_consolidated(chr4): Dumped reference sequences, 2283 seconds have elapsed
cactus_consolidated(chr4): Cactus consolidated is done!, 2283 seconds have elapsed
2023-07-05 14:28:12.866264: Successfully ran cactus_consolidated(chr4): "cactus_consolidated --sequences 'GRCh38 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/GRCh38.fa HG00438.1 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00438.1.fa HG00438.2 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00438.2.fa HG00621.1 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00621.1.fa HG00621.2 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00621.2.fa HG00673.1 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00673.1.fa HG00673.2 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00673.2.fa HG00733.1 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00733.1.fa HG00733.2 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00733.2.fa HG00735.1 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00735.1.fa HG00735.2 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00735.2.fa HG00741.1 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00741.1.fa HG00741.2 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG00741.2.fa HG01071.1 /data/tmp/2a95a9ee729755068515bad92da082de/f90a/01df/tmpmlxwbdws/HG <...> 55068515bad92da082de/f90a/01df/tmpmlxwbdws/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 2288.3187 seconds and 66.6 Gi memory with job-memory 476.8 Gi. Percent utilization: 13.97
2023-07-05 14:28:18.445599: Running the command: "halAppendCactusSubtree /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1c74/e907/tmp7y8f71pb/Anc0.hal.c2h /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1c74/e907/tmp7y8f71pb/Anc0.hal.fa (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098 <...> A20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1c74/e907/tmp7y8f71pb/Anc0.hal --inMemory"
Got message from job at time 07-05-2023 14:28:18: Ran cactus consolidated okay
2023-07-05 14:28:21.116186: Running the command: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd41/787a/tmpam5c_fs3/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd41/787a/tmpam5c_fs3/Anc0.hal.fa (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098 <...> A20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd41/787a/tmpam5c_fs3/Anc0.hal --inMemory"
Issued job 'export_hal' kind-export_hal/instance-iqw_e82w v1 with job batch system ID: 2775 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_hal' kind-export_hal/instance-tgua_kuo v1 with job batch system ID: 2776 and disk: 58.0 Gi, memory: 96.7 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 14:28:43: Ran cactus consolidated okay
Issued job 'export_hal' kind-export_hal/instance-kzk2g81g v1 with job batch system ID: 2777 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 14:28:53.381400: Successfully ran: "halAppendCactusSubtree /data/tmp/9fd0f61929a456269b41669e7d9612f5/ea54/3641/tmp55qye_mf/Anc0.hal.c2h /data/tmp/9fd0f61929a456269b41669e7d9612f5/ea54/3641/tmp55qye_mf/Anc0.hal.fa '(GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1 <...> ,_MINIGRAPH_:0.025)Anc0;' /data/tmp/9fd0f61929a456269b41669e7d9612f5/ea54/3641/tmp55qye_mf/Anc0.hal --inMemory" in 538.8319 seconds and 9.1 Gi memory with job-memory 71.0 Gi. Percent utilization: 12.8
2023-07-05 14:28:53.382760: Running the command: "halSetMetadata /data/tmp/9fd0f61929a456269b41669e7d9612f5/ea54/3641/tmp55qye_mf/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
2023-07-05 14:28:53.387860: Successfully ran: "halSetMetadata /data/tmp/9fd0f61929a456269b41669e7d9612f5/ea54/3641/tmp55qye_mf/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.0044 seconds and 5.9 Mi memory
2023-07-05 14:28:53.391799: Running the command: "halSetMetadata /data/tmp/9fd0f61929a456269b41669e7d9612f5/ea54/3641/tmp55qye_mf/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 14:28:53.395660: Successfully ran: "halSetMetadata /data/tmp/9fd0f61929a456269b41669e7d9612f5/ea54/3641/tmp55qye_mf/Anc0.hal CACTUS_CONFIG 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 <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0031 seconds and 5.9 Mi memory
2023-07-05 14:28:53.395857: Running the command: "halRemoveDupes /data/tmp/9fd0f61929a456269b41669e7d9612f5/ea54/3641/tmp55qye_mf/Anc0.hal GRCh38"
2023-07-05 14:28:53.460847: Successfully ran: "halRemoveDupes /data/tmp/9fd0f61929a456269b41669e7d9612f5/ea54/3641/tmp55qye_mf/Anc0.hal GRCh38" in 0.0643 seconds and 8.2 Mi memory with job-memory 71.0 Gi. Percent utilization: 0.01122
Issued job 'export_hal' kind-export_hal/instance-v7chab4r v1 with job batch system ID: 2778 and disk: 55.6 Gi, memory: 92.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_vg' kind-export_vg/instance-0kcfok3y v1 with job batch system ID: 2779 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_vg' kind-export_vg/instance-vi6hh2nu v1 with job batch system ID: 2780 and disk: 10.6 Gi, memory: 212.4 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 14:29:51.764740: Running the command: "halAppendCactusSubtree /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/87d8/b15d/tmpr6fdfs0v/Anc0.hal.c2h /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/87d8/b15d/tmpr6fdfs0v/Anc0.hal.fa (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098 <...> A20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/87d8/b15d/tmpr6fdfs0v/Anc0.hal --inMemory"
2023-07-05 14:29:52.706325: Successfully ran: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/d5a1/62eb/tmppe5u8hyj/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 919.9372 seconds and 18.4 Gi memory with job-memory 122.8 Gi. Percent utilization: 14.98
2023-07-05 14:30:09.232098: Running the command: "hal2vg /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5985/1344/tmp6ewz5md8/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
2023-07-05 14:30:38.074392: Running the command: "halAppendCactusSubtree /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7f73/786b/tmpih4iz54c/Anc0.hal.c2h /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7f73/786b/tmpih4iz54c/Anc0.hal.fa (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098 <...> A20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7f73/786b/tmpih4iz54c/Anc0.hal --inMemory"
2023-07-05 14:32:02.315536: Successfully ran: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/cbfa/428f/tmpkh_blu1h/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 1017.6433 seconds and 20.0 Gi memory with job-memory 135.9 Gi. Percent utilization: 14.7
2023-07-05 14:32:29.382434: Successfully ran: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a5c/90cc/tmpvdkg205i/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a5c/90cc/tmpvdkg205i/Anc0.hal.fa '(GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1 <...> ,_MINIGRAPH_:0.025)Anc0;' /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a5c/90cc/tmpvdkg205i/Anc0.hal --inMemory" in 568.037 seconds and 8.8 Gi memory with job-memory 70.9 Gi. Percent utilization: 12.46
2023-07-05 14:32:29.383808: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a5c/90cc/tmpvdkg205i/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
2023-07-05 14:32:29.388227: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a5c/90cc/tmpvdkg205i/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.0037 seconds and 5.9 Mi memory
2023-07-05 14:32:29.392164: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a5c/90cc/tmpvdkg205i/Anc0.hal CACTUS_CONFIG PD94bWwgdmVyc2lvbj0iMS4wIiA/Pgo8Y2FjdHVzV29ya2Zsb3dDb25maWcgZGlzdGFuY2VUb0FkZFRvUm9vdEFsaWdubWVudD0iMC4xIj4KCTxjb25zdGFudHMgZGVmYXVsdE1lbW9yeT0iMzUwMDAwMDAwMCIgZGVmYXVsdE92ZXJsYXJnZU1lbW9yeT0iMzUwMDAwMDAwMCIgZGVmYXVsdENwdT0iMSIgZGVmYXVsdE92ZXJsYXJnZUNwdT0iMSI+CgkJICAKCQk8ZGl2ZXJnZW5jZXMgdXNlRGVmYXVsdD0iMCIgb25lPSIwLjEiIHR3bz0iMC4xNSIgdGhyZWU9IjAuMiIgZm91cj0iMC4yNSIgZml2ZT0iMC4zNSIvPgoJPC9jb25zdGFudHM+Cgk8cHJlcHJvY2Vzc29yIG1lbW9yeT0iMjAwMDAwMDAwMCIgcHJlcHJvY2Vzc0pvYj0iY3V0SGVhZGVycyIgY3V0QmVmb3JlPSIiIGN1dEFmdGVyPSIgICIgYWN0aXZlPSIxIi8+Cgk8cHJlcHJvY2Vzc29yIG1lbW9yeT0iMjAwMDAwMDAwMCIgcHJlcHJvY2Vzc0pvYj0iY2hlY2tVbmlxdWVIZWFkZXJzIiBjaGVja0Fzc2VtYmx5SHViPSIxIiBhY3RpdmU9IjEiLz4KCTxwcmVwcm9jZXNzb3IgdW5tYXNrPSIwIiBjaHVua1NpemU9IjEwMDAwMDAwIiBwcm9wb3J0aW9uVG9TYW1wbGU9IjAuMiIgbWVtb3J5PSIyMDAwMDAwMDAwIiBwcmVwcm9jZXNzSm9iPSJsYXN0elJlcGVhdE1hc2siIG1pblBlcmlvZD0iNTAiIGxhc3R6T3B0cz0iLS1zdGVwPTMgLS1hbWJpZ3VvdXM9aXVwYWMsMTAwLDEwMCAtLXVuZ2FwcGVkIC0tcXVlcnloc3BsaW1pdD1rZWVwLG5vd2FybjoxNTAwIiBncHU9IjAiIGFjdGl2ZT0iMSIvPgoJPHByZXByb2Nlc3NvciB1bm1hc2s9IjEiIG1lbW9yeT0iMjAwMDAwMDAwMCIgcHJlcHJvY2Vzc0pvYj0iZG5hLWJybm4iIGRuYS1icm5uT3B0cz0iLUEiIGFjdGl2ZT0iMCIgYWN0aW9uPSJzb2Z0bWFz <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 14:32:29.396178: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a5c/90cc/tmpvdkg205i/Anc0.hal CACTUS_CONFIG 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 <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0032 seconds and 5.9 Mi memory
2023-07-05 14:32:29.396363: Running the command: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a5c/90cc/tmpvdkg205i/Anc0.hal GRCh38"
2023-07-05 14:32:29.469363: Successfully ran: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/7a5c/90cc/tmpvdkg205i/Anc0.hal GRCh38" in 0.0723 seconds and 8.2 Mi memory with job-memory 70.9 Gi. Percent utilization: 0.01134
Issued job 'export_vg' kind-export_vg/instance-2siihizx v1 with job batch system ID: 2781 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_vg' kind-export_vg/instance-8uxo1zss v1 with job batch system ID: 2782 and disk: 11.6 Gi, memory: 232.6 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 14:33:36.774917: Running the command: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/8d9b/8ac1/tmpla4769y4/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
2023-07-05 14:33:59.311558: Successfully ran: "hal2vg /data/tmp/9fd0f61929a456269b41669e7d9612f5/50a6/3174/tmpqdped1o8/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 956.2249 seconds and 20.1 Gi memory with job-memory 133.4 Gi. Percent utilization: 15.1
2023-07-05 14:36:38.496321: Successfully ran: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/398a/251b/tmptwike2q2/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/398a/251b/tmptwike2q2/Anc0.hal.fa '(GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1 <...> _MINIGRAPH_:0.025)Anc0;' /data/tmp/9eeeec3d467250f1999ba98b3759d207/398a/251b/tmptwike2q2/Anc0.hal --inMemory" in 665.651 seconds and 10.3 Gi memory with job-memory 82.7 Gi. Percent utilization: 12.49
2023-07-05 14:36:38.497653: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/398a/251b/tmptwike2q2/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
2023-07-05 14:36:38.503803: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/398a/251b/tmptwike2q2/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.0054 seconds and 5.9 Mi memory
2023-07-05 14:36:38.508155: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/398a/251b/tmptwike2q2/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 14:36:38.512076: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/398a/251b/tmptwike2q2/Anc0.hal CACTUS_CONFIG 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 <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0031 seconds and 5.9 Mi memory
2023-07-05 14:36:38.512278: Running the command: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/398a/251b/tmptwike2q2/Anc0.hal GRCh38"
2023-07-05 14:36:38.599300: Successfully ran: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/398a/251b/tmptwike2q2/Anc0.hal GRCh38" in 0.0863 seconds and 8.3 Mi memory with job-memory 82.7 Gi. Percent utilization: 0.009776
Issued job 'export_vg' kind-export_vg/instance-xrd7fwgi v1 with job batch system ID: 2783 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_vg' kind-export_vg/instance-h9b7g_xr v1 with job batch system ID: 2784 and disk: 13.7 Gi, memory: 273.9 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 14:37:29.650434: Successfully ran: "hal2vg /data/tmp/9fd0f61929a456269b41669e7d9612f5/4ff6/4aae/tmp1ocuqa2u/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 1136.0262 seconds and 23.4 Gi memory with job-memory 159.9 Gi. Percent utilization: 14.63
2023-07-05 14:37:38.197831: Running the command: "hal2vg /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/898e/d8b5/tmptyrnhu1z/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
2023-07-05 14:38:32.378652: Successfully ran: "hal2vg /data/tmp/9fd0f61929a456269b41669e7d9612f5/d9e1/ae66/tmpmbwgodq4/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 1079.6414 seconds and 22.0 Gi memory with job-memory 148.9 Gi. Percent utilization: 14.77
2023-07-05 14:38:42.733515: Successfully ran: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd41/787a/tmpam5c_fs3/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd41/787a/tmpam5c_fs3/Anc0.hal.fa '(GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1 <...> MINIGRAPH_:0.025)Anc0;' /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd41/787a/tmpam5c_fs3/Anc0.hal --inMemory" in 621.6162 seconds and 10.0 Gi memory with job-memory 78.5 Gi. Percent utilization: 12.69
2023-07-05 14:38:42.734890: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd41/787a/tmpam5c_fs3/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
2023-07-05 14:38:42.740826: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd41/787a/tmpam5c_fs3/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.0052 seconds and 5.9 Mi memory
2023-07-05 14:38:42.744718: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd41/787a/tmpam5c_fs3/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 14:38:42.748199: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd41/787a/tmpam5c_fs3/Anc0.hal CACTUS_CONFIG 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 <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0027 seconds and 5.9 Mi memory
2023-07-05 14:38:42.748374: Running the command: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd41/787a/tmpam5c_fs3/Anc0.hal GRCh38"
2023-07-05 14:38:42.833324: Successfully ran: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/dd41/787a/tmpam5c_fs3/Anc0.hal GRCh38" in 0.0844 seconds and 8.4 Mi memory with job-memory 78.5 Gi. Percent utilization: 0.01051
Issued job 'export_vg' kind-export_vg/instance-qy30dxss v1 with job batch system ID: 2785 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_vg' kind-export_vg/instance-32jpz4qu v1 with job batch system ID: 2786 and disk: 12.8 Gi, memory: 255.2 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 14:39:37.849330: Running the command: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/d7f5/6334/tmpdmrb5qp_/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
2023-07-05 14:39:59.100221: Successfully ran: "halAppendCactusSubtree /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1c74/e907/tmp7y8f71pb/Anc0.hal.c2h /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1c74/e907/tmp7y8f71pb/Anc0.hal.fa '(GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1 <...> MINIGRAPH_:0.025)Anc0;' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1c74/e907/tmp7y8f71pb/Anc0.hal --inMemory" in 700.6534 seconds and 11.0 Gi memory with job-memory 88.3 Gi. Percent utilization: 12.43
2023-07-05 14:39:59.101659: Running the command: "halSetMetadata /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1c74/e907/tmp7y8f71pb/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
2023-07-05 14:39:59.141208: Successfully ran: "halSetMetadata /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1c74/e907/tmp7y8f71pb/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.0388 seconds and 6.0 Mi memory
2023-07-05 14:39:59.145977: Running the command: "halSetMetadata /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1c74/e907/tmp7y8f71pb/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 14:39:59.150025: Successfully ran: "halSetMetadata /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1c74/e907/tmp7y8f71pb/Anc0.hal CACTUS_CONFIG 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 <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0032 seconds and 5.9 Mi memory
2023-07-05 14:39:59.150226: Running the command: "halRemoveDupes /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1c74/e907/tmp7y8f71pb/Anc0.hal GRCh38"
2023-07-05 14:39:59.272529: Successfully ran: "halRemoveDupes /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1c74/e907/tmp7y8f71pb/Anc0.hal GRCh38" in 0.1216 seconds and 8.5 Mi memory with job-memory 88.3 Gi. Percent utilization: 0.009357
cactus_consolidated(chr1): Ran cactus make reference bottom up coordinates, 2925 seconds have elapsed
Issued job 'export_vg' kind-export_vg/instance-02ywmpk2 v1 with job batch system ID: 2787 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr1): Ran cactus make reference top down coordinates, 2928 seconds have elapsed
Issued job 'export_vg' kind-export_vg/instance-hw21r_rr v1 with job batch system ID: 2788 and disk: 14.4 Gi, memory: 287.8 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr2): Ran cactus make reference bottom up coordinates, 2979 seconds have elapsed
cactus_consolidated(chr2): Ran cactus make reference top down coordinates, 2983 seconds have elapsed
2023-07-05 14:41:08.795930: Running the command: "hal2vg /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/89e7/0c6e/tmpb4_bt59a/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
cactus_consolidated(chr1): Ran cactus to hal stage, 3023 seconds have elapsed
cactus_consolidated(chr2): Ran cactus to hal stage, 3101 seconds have elapsed
2023-07-05 14:42:38.297003: Successfully ran: "halAppendCactusSubtree /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/87d8/b15d/tmpr6fdfs0v/Anc0.hal.c2h /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/87d8/b15d/tmpr6fdfs0v/Anc0.hal.fa '(GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1 <...> MINIGRAPH_:0.025)Anc0;' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/87d8/b15d/tmpr6fdfs0v/Anc0.hal --inMemory" in 766.5312 seconds and 11.9 Gi memory with job-memory 96.7 Gi. Percent utilization: 12.33
2023-07-05 14:42:38.297784: Running the command: "halSetMetadata /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/87d8/b15d/tmpr6fdfs0v/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
2023-07-05 14:42:38.309193: Successfully ran: "halSetMetadata /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/87d8/b15d/tmpr6fdfs0v/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.0108 seconds and 5.9 Mi memory
2023-07-05 14:42:38.311411: Running the command: "halSetMetadata /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/87d8/b15d/tmpr6fdfs0v/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 14:42:38.314582: Successfully ran: "halSetMetadata /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/87d8/b15d/tmpr6fdfs0v/Anc0.hal CACTUS_CONFIG 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 <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0027 seconds and 5.9 Mi memory
2023-07-05 14:42:38.314682: Running the command: "halRemoveDupes /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/87d8/b15d/tmpr6fdfs0v/Anc0.hal GRCh38"
2023-07-05 14:42:38.408283: Successfully ran: "halRemoveDupes /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/87d8/b15d/tmpr6fdfs0v/Anc0.hal GRCh38" in 0.0931 seconds and 8.6 Mi memory with job-memory 96.7 Gi. Percent utilization: 0.00864
cactus_consolidated(chr1): Dumped sequences for hal file, 3086 seconds have elapsed
Issued job 'export_vg' kind-export_vg/instance-vyoyhtt9 v1 with job batch system ID: 2789 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr1): Dumped reference sequences, 3090 seconds have elapsed
cactus_consolidated(chr1): Cactus consolidated is done!, 3090 seconds have elapsed
2023-07-05 14:42:54.286525: Successfully ran: "halAppendCactusSubtree /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7f73/786b/tmpih4iz54c/Anc0.hal.c2h /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7f73/786b/tmpih4iz54c/Anc0.hal.fa '(GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1 <...> _MINIGRAPH_:0.025)Anc0;' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7f73/786b/tmpih4iz54c/Anc0.hal --inMemory" in 736.211 seconds and 11.6 Gi memory with job-memory 92.7 Gi. Percent utilization: 12.49
2023-07-05 14:42:54.287219: Running the command: "halSetMetadata /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7f73/786b/tmpih4iz54c/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
2023-07-05 14:42:54.290906: Successfully ran: "halSetMetadata /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7f73/786b/tmpih4iz54c/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.0032 seconds and 5.9 Mi memory
2023-07-05 14:42:54.293129: Running the command: "halSetMetadata /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7f73/786b/tmpih4iz54c/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 14:42:54.296432: Successfully ran: "halSetMetadata /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7f73/786b/tmpih4iz54c/Anc0.hal CACTUS_CONFIG 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 <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0028 seconds and 5.9 Mi memory
2023-07-05 14:42:54.296537: Running the command: "halRemoveDupes /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7f73/786b/tmpih4iz54c/Anc0.hal GRCh38"
2023-07-05 14:42:54.393108: Successfully ran: "halRemoveDupes /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/7f73/786b/tmpih4iz54c/Anc0.hal GRCh38" in 0.096 seconds and 8.4 Mi memory with job-memory 92.7 Gi. Percent utilization: 0.008896
2023-07-05 14:42:54.604379: Successfully ran cactus_consolidated(chr1): "cactus_consolidated --sequences 'GRCh38 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/GRCh38.fa HG00438.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00438.1.fa HG00438.2 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00438.2.fa HG00621.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00621.1.fa HG00621.2 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00621.2.fa HG00673.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00673.1.fa HG00673.2 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00673.2.fa HG00733.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00733.1.fa HG00733.2 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00733.2.fa HG00735.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00735.1.fa HG00735.2 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00735.2.fa HG00741.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00741.1.fa HG00741.2 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG00741.2.fa HG01071.1 /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/HG <...> 5e69a78eee6ad1fdd0e6/e479/5c3b/tmpofgggrrc/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 3091.9312 seconds and 86.1 Gi memory with job-memory 476.8 Gi. Percent utilization: 18.06
Issued job 'export_vg' kind-export_vg/instance-_g33cyz6 v1 with job batch system ID: 2790 and disk: 15.8 Gi, memory: 316.2 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_vg' kind-export_vg/instance-v3oqjo36 v1 with job batch system ID: 2791 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
cactus_consolidated(chr2): Dumped sequences for hal file, 3155 seconds have elapsed
cactus_consolidated(chr2): Dumped reference sequences, 3157 seconds have elapsed
cactus_consolidated(chr2): Cactus consolidated is done!, 3157 seconds have elapsed
Issued job 'export_vg' kind-export_vg/instance-aowcm9kv v1 with job batch system ID: 2792 and disk: 15.2 Gi, memory: 304.1 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 14:43:33: Ran cactus consolidated okay
2023-07-05 14:43:35.374415: Successfully ran cactus_consolidated(chr2): "cactus_consolidated --sequences 'GRCh38 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/GRCh38.fa HG00438.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00438.1.fa HG00438.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00438.2.fa HG00621.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00621.1.fa HG00621.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00621.2.fa HG00673.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00673.1.fa HG00673.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00673.2.fa HG00733.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00733.1.fa HG00733.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00733.2.fa HG00735.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00735.1.fa HG00735.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00735.2.fa HG00741.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00741.1.fa HG00741.2 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG00741.2.fa HG01071.1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/HG <...> 50f1999ba98b3759d207/6b90/9563/tmp4b8_vsdf/Anc0.ref --outgroupEvents '' --referenceEvent Anc0 --threads 64" in 3163.3373 seconds and 80.3 Gi memory with job-memory 476.8 Gi. Percent utilization: 16.83
Issued job 'export_hal' kind-export_hal/instance-0g7psvxo v1 with job batch system ID: 2793 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 14:43:44.463423: Running the command: "hal2vg /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bb4/5981/tmpphxp8ubi/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
Issued job 'export_hal' kind-export_hal/instance-ccux1su6 v1 with job batch system ID: 2794 and disk: 72.6 Gi, memory: 120.9 Gi, cores: 1, accelerators: [], preemptible: False
Got message from job at time 07-05-2023 14:44:10: Ran cactus consolidated okay
Issued job 'export_hal' kind-export_hal/instance-kfx0d1os v1 with job batch system ID: 2795 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 14:44:15.416581: Running the command: "hal2vg /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/291f/bca2/tmpt8dqkyh2/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
2023-07-05 14:44:25.923850: Successfully ran: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f8a/59c3/tmpl1u4ip_k/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 1310.5601 seconds and 26.7 Gi memory with job-memory 142.6 Gi. Percent utilization: 18.75
Issued job 'export_hal' kind-export_hal/instance-lf1xjf_d v1 with job batch system ID: 2796 and disk: 69.8 Gi, memory: 116.3 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 14:45:51.549493: Running the command: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/f98a/3fd4/tmpi_skvbc4/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/f98a/3fd4/tmpi_skvbc4/Anc0.hal.fa (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098 <...> A20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/9eeeec3d467250f1999ba98b3759d207/f98a/3fd4/tmpi_skvbc4/Anc0.hal --inMemory"
2023-07-05 14:45:53.001691: Successfully ran: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/4f2b/3408/tmpb7hmz401/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 1187.8155 seconds and 24.4 Gi memory with job-memory 197.6 Gi. Percent utilization: 12.36
2023-07-05 14:46:24.531457: Running the command: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/5b91/d503/tmpc2p_xvnj/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/5b91/d503/tmpc2p_xvnj/Anc0.hal.fa (GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098 <...> A20129.1:0.025,NA20129.2:0.025,NA21309.1:0.025,NA21309.2:0.025,CHM13:0.025,HG02080.1:0.025,_MINIGRAPH_:0.025)Anc0; /data/tmp/9eeeec3d467250f1999ba98b3759d207/5b91/d503/tmpc2p_xvnj/Anc0.hal --inMemory"
2023-07-05 14:51:42.220401: Successfully ran: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/6059/0a13/tmp1jc1bg5h/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 1505.3993 seconds and 30.9 Gi memory with job-memory 212.1 Gi. Percent utilization: 14.55
2023-07-05 14:53:25.467237: Successfully ran: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/a957/251c/tmpinevgead/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 1539.6042 seconds and 31.4 Gi memory with job-memory 212.5 Gi. Percent utilization: 14.78
2023-07-05 14:54:30.687999: Successfully ran: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/9a25/c50d/tmpfrreawjk/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 1604.7216 seconds and 32.7 Gi memory with job-memory 215.1 Gi. Percent utilization: 15.19
2023-07-05 14:58:36.994604: Successfully ran: "hal2vg /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5985/1344/tmp6ewz5md8/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 1707.7612 seconds and 32.6 Gi memory with job-memory 212.4 Gi. Percent utilization: 15.34
2023-07-05 15:01:22.979402: Successfully ran: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/f98a/3fd4/tmpi_skvbc4/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/f98a/3fd4/tmpi_skvbc4/Anc0.hal.fa '(GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1 <...> INIGRAPH_:0.025)Anc0;' /data/tmp/9eeeec3d467250f1999ba98b3759d207/f98a/3fd4/tmpi_skvbc4/Anc0.hal --inMemory" in 931.4288 seconds and 15.2 Gi memory with job-memory 120.9 Gi. Percent utilization: 12.59
2023-07-05 15:01:22.980821: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/f98a/3fd4/tmpi_skvbc4/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
2023-07-05 15:01:22.987221: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/f98a/3fd4/tmpi_skvbc4/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.0057 seconds and 5.9 Mi memory
2023-07-05 15:01:22.991541: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/f98a/3fd4/tmpi_skvbc4/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 15:01:22.995117: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/f98a/3fd4/tmpi_skvbc4/Anc0.hal CACTUS_CONFIG 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 <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0028 seconds and 5.9 Mi memory
2023-07-05 15:01:22.995293: Running the command: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/f98a/3fd4/tmpi_skvbc4/Anc0.hal GRCh38"
2023-07-05 15:01:23.109201: Successfully ran: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/f98a/3fd4/tmpi_skvbc4/Anc0.hal GRCh38" in 0.1133 seconds and 8.7 Mi memory with job-memory 120.9 Gi. Percent utilization: 0.007018
Issued job 'export_vg' kind-export_vg/instance-rw3e27ir v1 with job batch system ID: 2797 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 15:01:48.211785: Successfully ran: "halAppendCactusSubtree /data/tmp/9eeeec3d467250f1999ba98b3759d207/5b91/d503/tmpc2p_xvnj/Anc0.hal.c2h /data/tmp/9eeeec3d467250f1999ba98b3759d207/5b91/d503/tmpc2p_xvnj/Anc0.hal.fa '(GRCh38:0.025,HG00438.1:0.025,HG00438.2:0.025,HG00621.1:0.025,HG00621.2:0.025,HG00673.1:0.025,HG00673.2:0.025,HG00733.1:0.025,HG00733.2:0.025,HG00735.1:0.025,HG00735.2:0.025,HG00741.1:0.025,HG00741.2:0.025,HG01071.1:0.025,HG01071.2:0.025,HG01106.1:0.025,HG01106.2:0.025,HG01109.1:0.025,HG01109.2:0.025,HG01123.1:0.025,HG01123.2:0.025,HG01175.1:0.025,HG01175.2:0.025,HG01243.1:0.025,HG01243.2:0.025,HG01258.1:0.025,HG01258.2:0.025,HG01358.1:0.025,HG01358.2:0.025,HG01361.1:0.025,HG01361.2:0.025,HG01891.1:0.025,HG01891.2:0.025,HG01928.1:0.025,HG01928.2:0.025,HG01952.1:0.025,HG01952.2:0.025,HG01978.1:0.025,HG01978.2:0.025,HG02055.1:0.025,HG02055.2:0.025,HG02080.2:0.025,HG02109.1:0.025,HG02109.2:0.025,HG02145.1:0.025,HG02145.2:0.025,HG02148.1:0.025,HG02148.2:0.025,HG02257.1:0.025,HG02257.2:0.025,HG02486.1:0.025,HG02486.2:0.025,HG02559.1:0.025,HG02559.2:0.025,HG02572.1:0.025,HG02572.2:0.025,HG02622.1:0.025,HG02622.2:0.025,HG02630.1:0.025,HG02630.2:0.025,HG02717.1:0.025,HG02717.2:0.025,HG02723.1:0.025,HG02723.2:0.025,HG02818.1:0.025,HG02818.2:0.025,HG02886.1:0.025,HG02886.2:0.025,HG03098.1 <...> INIGRAPH_:0.025)Anc0;' /data/tmp/9eeeec3d467250f1999ba98b3759d207/5b91/d503/tmpc2p_xvnj/Anc0.hal --inMemory" in 923.6793 seconds and 14.4 Gi memory with job-memory 116.3 Gi. Percent utilization: 12.42
2023-07-05 15:01:48.213044: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/5b91/d503/tmpc2p_xvnj/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b"
2023-07-05 15:01:48.217596: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/5b91/d503/tmpc2p_xvnj/Anc0.hal CACTUS_COMMIT 55a1d7168ab0f5d56a2cd2bb6faf1505823a8c4b" in 0.0039 seconds and 5.9 Mi memory
2023-07-05 15:01:48.219818: Running the command: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/5b91/d503/tmpc2p_xvnj/Anc0.hal CACTUS_CONFIG 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 <...> DA9IjEyODAwMDAwMDAwMCIgc2VxX3NpemVfNDAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K"
2023-07-05 15:01:48.223690: Successfully ran: "halSetMetadata /data/tmp/9eeeec3d467250f1999ba98b3759d207/5b91/d503/tmpc2p_xvnj/Anc0.hal CACTUS_CONFIG 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 <...> DAwMDAwMDAwMD0iMjU2MDAwMDAwMDAwIiBzZXFfc2l6ZV8xMDAwMDAwMDAwMD0iNTEyMDAwMDAwMDAwIi8+Cgk8L2NvbnNvbGlkYXRlZD4KCTxjb25zb2xpZGF0ZWQyLz4KPC9jYWN0dXNXb3JrZmxvd0NvbmZpZz4K" in 0.0033 seconds and 5.9 Mi memory
2023-07-05 15:01:48.223812: Running the command: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/5b91/d503/tmpc2p_xvnj/Anc0.hal GRCh38"
2023-07-05 15:01:48.342622: Successfully ran: "halRemoveDupes /data/tmp/9eeeec3d467250f1999ba98b3759d207/5b91/d503/tmpc2p_xvnj/Anc0.hal GRCh38" in 0.1183 seconds and 8.8 Mi memory with job-memory 116.3 Gi. Percent utilization: 0.007349
Issued job 'export_vg' kind-export_vg/instance-yl25t739 v1 with job batch system ID: 2798 and disk: 18.9 Gi, memory: 378.9 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_vg' kind-export_vg/instance-n4w4l71e v1 with job batch system ID: 2799 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'export_vg' kind-export_vg/instance-4nuiohja v1 with job batch system ID: 2800 and disk: 19.3 Gi, memory: 385.4 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 15:02:43.403660: Running the command: "hal2vg /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e15d/ad78/tmpty_gmd4k/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
2023-07-05 15:02:56.487642: Successfully ran: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/8d9b/8ac1/tmpla4769y4/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 1759.7116 seconds and 36.1 Gi memory with job-memory 232.6 Gi. Percent utilization: 15.51
7 jobs are running, 0 jobs are issued and waiting to run
2023-07-05 15:03:14.397086: Running the command: "hal2vg /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c8c5/c841/tmpx3lfw57s/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13"
2023-07-05 15:10:11.224925: Successfully ran: "hal2vg /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/898e/d8b5/tmptyrnhu1z/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 1953.026 seconds and 40.3 Gi memory with job-memory 273.9 Gi. Percent utilization: 14.73
2023-07-05 15:11:28.313619: Successfully ran: "hal2vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/d7f5/6334/tmpdmrb5qp_/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 1910.4633 seconds and 39.0 Gi memory with job-memory 255.2 Gi. Percent utilization: 15.29
2023-07-05 15:15:50.045203: Successfully ran: "hal2vg /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/89e7/0c6e/tmpb4_bt59a/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 2081.248 seconds and 41.8 Gi memory with job-memory 287.8 Gi. Percent utilization: 14.52
2023-07-05 15:20:50.936387: Successfully ran: "hal2vg /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6bb4/5981/tmpphxp8ubi/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 2226.4717 seconds and 44.8 Gi memory with job-memory 316.2 Gi. Percent utilization: 14.17
2023-07-05 15:21:39.192054: Successfully ran: "hal2vg /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/291f/bca2/tmpt8dqkyh2/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 2243.7743 seconds and 46.0 Gi memory with job-memory 304.1 Gi. Percent utilization: 15.14
2023-07-05 15:48:43.190862: Successfully ran: "hal2vg /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e15d/ad78/tmpty_gmd4k/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 2759.7856 seconds and 54.3 Gi memory with job-memory 378.9 Gi. Percent utilization: 14.32
2023-07-05 15:50:38.417578: Successfully ran: "hal2vg /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c8c5/c841/tmpx3lfw57s/out.hal --progress --inMemory --ignoreGenomes Anc0 --refGenomes _MINIGRAPH_,GRCh38,CHM13" in 2844.0193 seconds and 58.0 Gi memory with job-memory 385.4 Gi. Percent utilization: 15.06
Issued job 'export_align_wrapper' kind-export_align_wrapper/instance-n8emv6pf v1 with job batch system ID: 2801 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'merge_hal' kind-merge_hal/instance-ky77xfuj v1 with job batch system ID: 2802 and disk: 155.6 Gi, memory: 12.8 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'Job' kind-Job/instance-dc6xur0p v1 with job batch system ID: 2803 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-q5m2quof v1 with job batch system ID: 2804 and disk: 15.7 Gi, memory: 15.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-9awttsq4 v1 with job batch system ID: 2805 and disk: 29.2 Gi, memory: 29.2 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-qb675l_2 v1 with job batch system ID: 2806 and disk: 43.3 Gi, memory: 43.3 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-b4ug_mg3 v1 with job batch system ID: 2807 and disk: 27.1 Gi, memory: 27.1 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-0l06byfu v1 with job batch system ID: 2808 and disk: 24.5 Gi, memory: 24.5 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-g5bpslwa v1 with job batch system ID: 2809 and disk: 58.4 Gi, memory: 58.4 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-du98rffm v1 with job batch system ID: 2810 and disk: 77.7 Gi, memory: 77.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-of4r9v9e v1 with job batch system ID: 2811 and disk: 27.2 Gi, memory: 27.2 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-bmujl72v v1 with job batch system ID: 2812 and disk: 54.7 Gi, memory: 54.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-53auw66j v1 with job batch system ID: 2813 and disk: 49.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-2t4enann v1 with job batch system ID: 2814 and disk: 35.9 Gi, memory: 35.9 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-ol3jwsr4 v1 with job batch system ID: 2815 and disk: 2.1 Gi, memory: 2.1 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-sykb5mjp v1 with job batch system ID: 2816 and disk: 41.5 Gi, memory: 41.5 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-umqv8_ux v1 with job batch system ID: 2817 and disk: 51.5 Gi, memory: 51.5 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-mm_5itir v1 with job batch system ID: 2818 and disk: 23.1 Gi, memory: 23.1 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-dr_7wqdv v1 with job batch system ID: 2819 and disk: 6.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-c6lv5e9o v1 with job batch system ID: 2820 and disk: 52.5 Gi, memory: 52.5 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-yomllkty v1 with job batch system ID: 2821 and disk: 52.1 Gi, memory: 52.1 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-0c5oc0aw v1 with job batch system ID: 2822 and disk: 48.0 Gi, memory: 48.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-z981sz81 v1 with job batch system ID: 2823 and disk: 40.3 Gi, memory: 40.3 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-f080otve v1 with job batch system ID: 2824 and disk: 73.6 Gi, memory: 73.6 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-pv1azwgb v1 with job batch system ID: 2825 and disk: 61.1 Gi, memory: 61.1 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-rb4kh2t9 v1 with job batch system ID: 2826 and disk: 24.7 Gi, memory: 24.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-ulqlgq0o v1 with job batch system ID: 2827 and disk: 30.9 Gi, memory: 30.9 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-_rtr2eud v1 with job batch system ID: 2828 and disk: 29.5 Gi, memory: 29.5 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-6w4wf6ob v1 with job batch system ID: 2829 and disk: 354.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-9atdyxi4 v1 with job batch system ID: 2830 and disk: 16.4 Gi, memory: 16.4 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 15:58:30.369477: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/fa8e/22b3/tmpj_i8x9t6/chrM.vg"
2023-07-05 15:58:30.453218: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/a9f7/90a8/tmpohorc1q0/chrY.vg"
2023-07-05 15:58:30.480222: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/e689/5c1b/tmp48xk4ymo/chrEBV.vg"
2023-07-05 15:58:31.341413: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/fa8e/22b3/tmpj_i8x9t6/chrM.vg" in 0.9709 seconds and 14.9 Mi memory with job-memory 2.0 Gi. Percent utilization: 0.7275
2023-07-05 15:58:31.341774: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/fa8e/22b3/tmpj_i8x9t6/chrM.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/fa8e/22b3/tmpj_i8x9t6/chrM.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 15:58:31.394681: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/e689/5c1b/tmp48xk4ymo/chrEBV.vg" in 0.9134 seconds and 17.9 Mi memory with job-memory 2.0 Gi. Percent utilization: 0.8728
2023-07-05 15:58:31.395005: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/e689/5c1b/tmp48xk4ymo/chrEBV.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/e689/5c1b/tmp48xk4ymo/chrEBV.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 15:58:31.538022: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/fa8e/22b3/tmpj_i8x9t6/chrM.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/fa8e/22b3/tmpj_i8x9t6/chrM.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 0.1952 seconds and 6.1 Mi memory with job-memory 2.0 Gi. Percent utilization: 0.2964
2023-07-05 15:58:31.538259: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/fa8e/22b3/tmpj_i8x9t6/chrM.vg.gfa"
2023-07-05 15:58:31.554656: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/fa8e/22b3/tmpj_i8x9t6/chrM.vg.gfa" in 0.0156 seconds and 1.6 Mi memory
2023-07-05 15:58:31.554749: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/fa8e/22b3/tmpj_i8x9t6/chrM.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:CHM13 GRCh38 _MINIGRAPH_/"
2023-07-05 15:58:31.572468: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/fa8e/22b3/tmpj_i8x9t6/chrM.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:CHM13 GRCh38 _MINIGRAPH_/'" in 0.0172 seconds and 2.3 Mi memory
2023-07-05 15:58:31.572601: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/fa8e/22b3/tmpj_i8x9t6/chrM.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 15:58:31.671928: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/fa8e/22b3/tmpj_i8x9t6/chrM.vg.gfaffixed.gfa | vg mod -u -'" in 0.0988 seconds and 16.0 Mi memory
2023-07-05 15:58:31.672191: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/fa8e/22b3/tmpj_i8x9t6/chrM.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
2023-07-05 15:58:31.722184: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/e689/5c1b/tmp48xk4ymo/chrEBV.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/e689/5c1b/tmp48xk4ymo/chrEBV.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 0.3262 seconds and 36.2 Mi memory with job-memory 2.0 Gi. Percent utilization: 1.765
2023-07-05 15:58:31.722428: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/e689/5c1b/tmp48xk4ymo/chrEBV.vg.gfa"
2023-07-05 15:58:31.725027: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/e689/5c1b/tmp48xk4ymo/chrEBV.vg.gfa" in 0.0019 seconds and 1.6 Mi memory
2023-07-05 15:58:31.725117: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/e689/5c1b/tmp48xk4ymo/chrEBV.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:_MINIGRAPH_ GRCh38/"
2023-07-05 15:58:31.736885: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/e689/5c1b/tmp48xk4ymo/chrEBV.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:_MINIGRAPH_ GRCh38/'" in 0.0113 seconds and 2.4 Mi memory
2023-07-05 15:58:31.737017: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/e689/5c1b/tmp48xk4ymo/chrEBV.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 15:58:31.871462: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b59/6077/tmp3bd7vwzw/chrOther.vg"
2023-07-05 15:58:31.949128: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/fa8e/22b3/tmpj_i8x9t6/chrM.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 0.2762 seconds and 15.2 Mi memory with job-memory 2.0 Gi. Percent utilization: 0.7433
2023-07-05 15:58:31.949430: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/fa8e/22b3/tmpj_i8x9t6/chrM.vg.clip"
2023-07-05 15:58:31.977667: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/fa8e/22b3/tmpj_i8x9t6/chrM.vg.clip" in 0.0274 seconds and 15.2 Mi memory
2023-07-05 15:58:32.258323: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/e689/5c1b/tmp48xk4ymo/chrEBV.vg.gfaffixed.gfa | vg mod -u -'" in 0.5208 seconds and 26.6 Mi memory
2023-07-05 15:58:32.258620: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/e689/5c1b/tmp48xk4ymo/chrEBV.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
2023-07-05 15:58:32.359672: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b59/6077/tmp3bd7vwzw/chrOther.vg" in 0.4869 seconds and 37.1 Mi memory with job-memory 2.0 Gi. Percent utilization: 1.813
2023-07-05 15:58:32.359987: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b59/6077/tmp3bd7vwzw/chrOther.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b59/6077/tmp3bd7vwzw/chrOther.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 15:58:32.393252: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/e689/5c1b/tmp48xk4ymo/chrEBV.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 0.1338 seconds and 19.3 Mi memory with job-memory 2.0 Gi. Percent utilization: 0.9432
2023-07-05 15:58:32.393450: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/e689/5c1b/tmp48xk4ymo/chrEBV.vg.clip"
2023-07-05 15:58:32.459959: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/e689/5c1b/tmp48xk4ymo/chrEBV.vg.clip" in 0.0659 seconds and 17.9 Mi memory
2023-07-05 15:58:33.719170: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/a9f7/90a8/tmpohorc1q0/chrY.vg" in 3.2648 seconds and 200.8 Mi memory with job-memory 2.1 Gi. Percent utilization: 9.397
2023-07-05 15:58:33.719484: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/a9f7/90a8/tmpohorc1q0/chrY.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/a9f7/90a8/tmpohorc1q0/chrY.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 15:58:33.802540: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b59/6077/tmp3bd7vwzw/chrOther.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b59/6077/tmp3bd7vwzw/chrOther.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 1.4415 seconds and 213.8 Mi memory with job-memory 2.0 Gi. Percent utilization: 10.44
2023-07-05 15:58:33.802799: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b59/6077/tmp3bd7vwzw/chrOther.vg.gfa"
2023-07-05 15:58:33.805525: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b59/6077/tmp3bd7vwzw/chrOther.vg.gfa" in 0.002 seconds and 1.7 Mi memory
2023-07-05 15:58:33.805617: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b59/6077/tmp3bd7vwzw/chrOther.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 _MINIGRAPH_/"
2023-07-05 15:58:33.871812: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b59/6077/tmp3bd7vwzw/chrOther.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 _MINIGRAPH_/'" in 0.0656 seconds and 3.9 Mi memory
2023-07-05 15:58:33.872045: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b59/6077/tmp3bd7vwzw/chrOther.vg.gfaffixed.gfa | vg mod -u -"
Issued job 'vg_to_og' kind-vg_to_og/instance-4mbs47f4 v1 with job batch system ID: 2831 and disk: 39.7 Mi, memory: 55.8 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_og' kind-vg_to_og/instance-by7lfkgi v1 with job batch system ID: 2832 and disk: 5.3 Mi, memory: 55.8 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 15:58:37.804433: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b59/6077/tmp3bd7vwzw/chrOther.vg.gfaffixed.gfa | vg mod -u -'" in 3.9317 seconds and 97.7 Mi memory
2023-07-05 15:58:37.804759: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b59/6077/tmp3bd7vwzw/chrOther.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
2023-07-05 15:58:38.764498: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/a9f7/90a8/tmpohorc1q0/chrY.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/a9f7/90a8/tmpohorc1q0/chrY.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 5.0441 seconds and 884.4 Mi memory with job-memory 2.1 Gi. Percent utilization: 41.39
2023-07-05 15:58:38.764723: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/a9f7/90a8/tmpohorc1q0/chrY.vg.gfa"
2023-07-05 15:58:38.766952: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/a9f7/90a8/tmpohorc1q0/chrY.vg.gfa" in 0.0016 seconds and 1.5 Mi memory
2023-07-05 15:58:38.767040: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/a9f7/90a8/tmpohorc1q0/chrY.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/"
2023-07-05 15:58:39.136964: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/a9f7/90a8/tmpohorc1q0/chrY.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/'" in 0.3694 seconds and 60.7 Mi memory
2023-07-05 15:58:39.137350: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/a9f7/90a8/tmpohorc1q0/chrY.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 15:58:39.208367: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b59/6077/tmp3bd7vwzw/chrOther.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 1.4028 seconds and 49.1 Mi memory with job-memory 2.0 Gi. Percent utilization: 2.395
2023-07-05 15:58:39.208558: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b59/6077/tmp3bd7vwzw/chrOther.vg.clip"
2023-07-05 15:58:39.332166: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/9b59/6077/tmp3bd7vwzw/chrOther.vg.clip" in 0.1228 seconds and 32.2 Mi memory
Issued job 'vg_to_og' kind-vg_to_og/instance-dqu80wky v1 with job batch system ID: 2833 and disk: 283.3 Mi, memory: 55.8 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 15:58:49.809706: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/f3b9/7b9c/tmpduyx_axy/chr22.vg"
2023-07-05 15:58:50.290267: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/da1e/8c62/tmpi2y9rtti/chr21.vg"
2023-07-05 15:58:57.945600: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/e7c0/23ab/tmpie2ld615/chr20.vg"
2023-07-05 15:58:59.641584: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/f09d/7fc6/tmpmqc2gi4g/chrX.vg"
2023-07-05 15:58:59.868055: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/6cd4/c2c0/tmpcqd_j7zj/chr18.vg"
2023-07-05 15:59:00.669526: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/1dd1/f74f/tmp2go1i3n2/chr19.vg"
2023-07-05 15:59:02.053994: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fff/88da/tmprm49zpq7/chr15.vg"
2023-07-05 15:59:02.349213: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/76ae/506d/tmpvedxzlw0/chr17.vg"
2023-07-05 15:59:04.424653: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/467e/8515/tmp6c1vh5k4/chr14.vg"
2023-07-05 15:59:04.778135: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/f3b9/7b9c/tmpduyx_axy/chr22.vg" in 14.967 seconds and 1.0 Gi memory with job-memory 15.7 Gi. Percent utilization: 6.485
2023-07-05 15:59:04.778453: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/f3b9/7b9c/tmpduyx_axy/chr22.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/f3b9/7b9c/tmpduyx_axy/chr22.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 15:59:05.202381: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/5eda/4d67/tmpdm56vfim/chr13.vg"
2023-07-05 15:59:06.184106: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/da1e/8c62/tmpi2y9rtti/chr21.vg" in 15.8925 seconds and 1.0 Gi memory with job-memory 16.4 Gi. Percent utilization: 6.328
2023-07-05 15:59:06.184329: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/da1e/8c62/tmpi2y9rtti/chr21.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/da1e/8c62/tmpi2y9rtti/chr21.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 15:59:10.904209: Running the command: "bash -c set -eo pipefail && vg convert -f -W chrM.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 15:59:10.939721: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chrM.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 0.0319 seconds and 15.4 Mi memory with job-memory 55.8 Gi. Percent utilization: 0.02697
2023-07-05 15:59:10.939978: Running the command: "odgi build -g chrM.vg.gfa -o chrM.vg.og -t 1"
2023-07-05 15:59:11.071928: Running the command: "bash -c set -eo pipefail && vg convert -f -W chrEBV.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 15:59:11.172985: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chrEBV.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 0.0737 seconds and 18.4 Mi memory with job-memory 55.8 Gi. Percent utilization: 0.03221
2023-07-05 15:59:11.173260: Running the command: "odgi build -g chrEBV.vg.gfa -o chrEBV.vg.og -t 1"
2023-07-05 15:59:11.879963: Running the command: "bash -c set -eo pipefail && vg convert -f -W chrOther.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 15:59:12.246072: Successfully ran: "odgi build -g chrM.vg.gfa -o chrM.vg.og -t 1" in 1.3054 seconds and 10.9 Mi memory with job-memory 55.8 Gi. Percent utilization: 0.0191
2023-07-05 15:59:12.605258: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chrOther.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 0.6729 seconds and 36.1 Mi memory with job-memory 55.8 Gi. Percent utilization: 0.06321
2023-07-05 15:59:12.605538: Running the command: "odgi build -g chrOther.vg.gfa -o chrOther.vg.og -t 1"
2023-07-05 15:59:12.739900: Successfully ran: "odgi build -g chrEBV.vg.gfa -o chrEBV.vg.og -t 1" in 1.5658 seconds and 23.8 Mi memory with job-memory 55.8 Gi. Percent utilization: 0.04165
2023-07-05 15:59:14.095842: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/9220/bc27/tmpickvnu_k/chr16.vg"
2023-07-05 15:59:14.187368: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/a9f7/90a8/tmpohorc1q0/chrY.vg.gfaffixed.gfa | vg mod -u -'" in 35.0492 seconds and 814.6 Mi memory
2023-07-05 15:59:14.187707: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/a9f7/90a8/tmpohorc1q0/chrY.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
2023-07-05 15:59:14.680215: Successfully ran: "odgi build -g chrOther.vg.gfa -o chrOther.vg.og -t 1" in 2.0739 seconds and 72.3 Mi memory with job-memory 55.8 Gi. Percent utilization: 0.1266
2023-07-05 15:59:17.216184: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/a9f7/90a8/tmpohorc1q0/chrY.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 3.0278 seconds and 158.6 Mi memory with job-memory 2.1 Gi. Percent utilization: 7.424
2023-07-05 15:59:17.216389: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/a9f7/90a8/tmpohorc1q0/chrY.vg.clip"
2023-07-05 15:59:17.615977: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/a9f7/90a8/tmpohorc1q0/chrY.vg.clip" in 0.3988 seconds and 125.5 Mi memory
2023-07-05 15:59:18.406765: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/de03/9906/tmpjtxmed47/chr12.vg"
2023-07-05 15:59:19.296112: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/a0de/f07f/tmppmusc2c8/chr11.vg"
2023-07-05 15:59:20.239748: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/e028/22f1/tmpk4zzm5vc/chr10.vg"
2023-07-05 15:59:21.272472: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/29e7/66e5/tmpmgcz99_p/chr8.vg"
2023-07-05 15:59:23.118756: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/0fb0/6f2f/tmp054zsba1/chr9.vg"
2023-07-05 15:59:23.148549: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f2c/9d0c/tmpa0_rren4/chr7.vg"
2023-07-05 15:59:23.220012: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/e7c0/23ab/tmpie2ld615/chr20.vg" in 25.273 seconds and 1.4 Gi memory with job-memory 23.1 Gi. Percent utilization: 6.11
2023-07-05 15:59:23.220337: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/e7c0/23ab/tmpie2ld615/chr20.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/e7c0/23ab/tmpie2ld615/chr20.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 15:59:24.106896: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/2cbf/ec90/tmpbt8d2gn2/chr6.vg"
2023-07-05 15:59:25.680622: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/aa81/5255/tmpd208gvzq/chr5.vg"
2023-07-05 15:59:26.479848: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/6cd4/c2c0/tmpcqd_j7zj/chr18.vg" in 26.6107 seconds and 1.5 Gi memory with job-memory 24.5 Gi. Percent utilization: 6.222
2023-07-05 15:59:26.480178: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/6cd4/c2c0/tmpcqd_j7zj/chr18.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/6cd4/c2c0/tmpcqd_j7zj/chr18.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 15:59:26.782684: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/b078/06bb/tmpztfg83d0/chr3.vg"
2023-07-05 15:59:27.668682: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/b379/49be/tmpr0aj62tt/chr4.vg"
2023-07-05 15:59:28.028107: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/1dd1/f74f/tmp2go1i3n2/chr19.vg" in 27.3572 seconds and 1.5 Gi memory with job-memory 24.7 Gi. Percent utilization: 6.153
2023-07-05 15:59:28.028438: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/1dd1/f74f/tmp2go1i3n2/chr19.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/1dd1/f74f/tmp2go1i3n2/chr19.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
Issued job 'vg_to_og' kind-vg_to_og/instance-wefm2qd4 v1 with job batch system ID: 2834 and disk: 1.7 Gi, memory: 55.8 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 15:59:29.514377: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/33fa/a3a8/tmpniby2yup/chr2.vg"
2023-07-05 15:59:29.693367: Running the command: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/c161/6db7/tmpxtpz6t4k/chr1.vg"
2023-07-05 15:59:31.241692: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fff/88da/tmprm49zpq7/chr15.vg" in 29.1863 seconds and 1.7 Gi memory with job-memory 27.2 Gi. Percent utilization: 6.231
2023-07-05 15:59:31.241995: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fff/88da/tmprm49zpq7/chr15.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fff/88da/tmprm49zpq7/chr15.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 15:59:31.302617: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/f09d/7fc6/tmpmqc2gi4g/chrX.vg" in 31.6549 seconds and 1.8 Gi memory with job-memory 29.2 Gi. Percent utilization: 6.211
2023-07-05 15:59:31.304054: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/f09d/7fc6/tmpmqc2gi4g/chrX.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/f09d/7fc6/tmpmqc2gi4g/chrX.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 15:59:31.565925: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/76ae/506d/tmpvedxzlw0/chr17.vg" in 29.2153 seconds and 1.7 Gi memory with job-memory 27.1 Gi. Percent utilization: 6.111
2023-07-05 15:59:31.566264: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/76ae/506d/tmpvedxzlw0/chr17.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/76ae/506d/tmpvedxzlw0/chr17.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 15:59:38.292541: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/467e/8515/tmp6c1vh5k4/chr14.vg" in 33.8665 seconds and 1.9 Gi memory with job-memory 29.5 Gi. Percent utilization: 6.524
2023-07-05 15:59:38.292899: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/467e/8515/tmp6c1vh5k4/chr14.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/467e/8515/tmp6c1vh5k4/chr14.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 15:59:40.562305: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/5eda/4d67/tmpdm56vfim/chr13.vg" in 35.3585 seconds and 2.0 Gi memory with job-memory 30.9 Gi. Percent utilization: 6.414
2023-07-05 15:59:40.562670: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/5eda/4d67/tmpdm56vfim/chr13.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/5eda/4d67/tmpdm56vfim/chr13.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 15:59:55.865222: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/9220/bc27/tmpickvnu_k/chr16.vg" in 41.7683 seconds and 2.3 Gi memory with job-memory 35.9 Gi. Percent utilization: 6.306
2023-07-05 15:59:55.865580: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/9220/bc27/tmpickvnu_k/chr16.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/9220/bc27/tmpickvnu_k/chr16.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 15:59:59.334841: Running the command: "bash -c set -eo pipefail && vg convert -f -W chrY.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 16:00:03.397589: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/de03/9906/tmpjtxmed47/chr12.vg" in 44.9898 seconds and 2.5 Gi memory with job-memory 40.3 Gi. Percent utilization: 6.107
2023-07-05 16:00:03.397830: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/de03/9906/tmpjtxmed47/chr12.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/de03/9906/tmpjtxmed47/chr12.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 16:00:04.793788: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chrY.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 5.4578 seconds and 197.9 Mi memory with job-memory 55.8 Gi. Percent utilization: 0.3466
2023-07-05 16:00:04.794205: Running the command: "odgi build -g chrY.vg.gfa -o chrY.vg.og -t 1"
2023-07-05 16:00:05.133676: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/a0de/f07f/tmppmusc2c8/chr11.vg" in 45.8364 seconds and 2.5 Gi memory with job-memory 41.5 Gi. Percent utilization: 6.141
2023-07-05 16:00:05.134034: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/a0de/f07f/tmppmusc2c8/chr11.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/a0de/f07f/tmppmusc2c8/chr11.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 16:00:07.713875: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/e028/22f1/tmpk4zzm5vc/chr10.vg" in 47.4729 seconds and 2.7 Gi memory with job-memory 43.3 Gi. Percent utilization: 6.198
2023-07-05 16:00:07.714225: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/e028/22f1/tmpk4zzm5vc/chr10.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/e028/22f1/tmpk4zzm5vc/chr10.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 16:00:17.190381: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/29e7/66e5/tmpmgcz99_p/chr8.vg" in 55.9165 seconds and 2.9 Gi memory with job-memory 48.0 Gi. Percent utilization: 6.098
2023-07-05 16:00:17.190713: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/29e7/66e5/tmpmgcz99_p/chr8.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/29e7/66e5/tmpmgcz99_p/chr8.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 16:00:17.495551: Successfully ran: "odgi build -g chrY.vg.gfa -o chrY.vg.og -t 1" in 12.7004 seconds and 369.7 Mi memory with job-memory 55.8 Gi. Percent utilization: 0.6473
2023-07-05 16:00:22.473039: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f2c/9d0c/tmpa0_rren4/chr7.vg" in 59.3233 seconds and 3.2 Gi memory with job-memory 52.5 Gi. Percent utilization: 6.084
2023-07-05 16:00:22.473383: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f2c/9d0c/tmpa0_rren4/chr7.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f2c/9d0c/tmpa0_rren4/chr7.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 16:00:23.014419: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/2cbf/ec90/tmpbt8d2gn2/chr6.vg" in 58.9064 seconds and 3.2 Gi memory with job-memory 52.1 Gi. Percent utilization: 6.096
2023-07-05 16:00:23.014748: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/2cbf/ec90/tmpbt8d2gn2/chr6.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/2cbf/ec90/tmpbt8d2gn2/chr6.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 16:00:26.938068: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/aa81/5255/tmpd208gvzq/chr5.vg" in 61.2563 seconds and 3.3 Gi memory with job-memory 54.7 Gi. Percent utilization: 6.086
2023-07-05 16:00:26.938416: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/aa81/5255/tmpd208gvzq/chr5.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/aa81/5255/tmpd208gvzq/chr5.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 16:00:27.590042: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/0fb0/6f2f/tmp054zsba1/chr9.vg" in 64.4701 seconds and 3.1 Gi memory with job-memory 51.5 Gi. Percent utilization: 5.994
2023-07-05 16:00:27.590383: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/0fb0/6f2f/tmp054zsba1/chr9.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/0fb0/6f2f/tmp054zsba1/chr9.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 16:00:30.908606: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/b078/06bb/tmpztfg83d0/chr3.vg" in 64.1247 seconds and 3.9 Gi memory with job-memory 58.4 Gi. Percent utilization: 6.693
2023-07-05 16:00:30.908957: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/b078/06bb/tmpztfg83d0/chr3.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/b078/06bb/tmpztfg83d0/chr3.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 16:00:33.488504: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/b379/49be/tmpr0aj62tt/chr4.vg" in 65.8187 seconds and 3.7 Gi memory with job-memory 61.1 Gi. Percent utilization: 6.106
2023-07-05 16:00:33.488854: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/b379/49be/tmpr0aj62tt/chr4.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/b379/49be/tmpr0aj62tt/chr4.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 16:00:49.416647: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/33fa/a3a8/tmpniby2yup/chr2.vg" in 79.9011 seconds and 4.5 Gi memory with job-memory 73.6 Gi. Percent utilization: 6.076
2023-07-05 16:00:49.416988: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/33fa/a3a8/tmpniby2yup/chr2.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/33fa/a3a8/tmpniby2yup/chr2.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 16:00:56.190215: Successfully ran: "vg convert -W -f /data/tmp/9eeeec3d467250f1999ba98b3759d207/c161/6db7/tmpxtpz6t4k/chr1.vg" in 86.4956 seconds and 4.9 Gi memory with job-memory 77.7 Gi. Percent utilization: 6.362
2023-07-05 16:00:56.190568: Running the command: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/c161/6db7/tmpxtpz6t4k/chr1.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/c161/6db7/tmpxtpz6t4k/chr1.vg.gfaffixed.gfa --check_transformation --dont_collapse GRCh38*"
2023-07-05 16:01:28.750903: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/f3b9/7b9c/tmpduyx_axy/chr22.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/f3b9/7b9c/tmpduyx_axy/chr22.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 143.9714 seconds and 6.8 Gi memory with job-memory 15.7 Gi. Percent utilization: 43.42
2023-07-05 16:01:28.752195: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/f3b9/7b9c/tmpduyx_axy/chr22.vg.gfa"
2023-07-05 16:01:28.849528: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/f3b9/7b9c/tmpduyx_axy/chr22.vg.gfa" in 0.0961 seconds and 1.7 Mi memory
2023-07-05 16:01:28.849778: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/f3b9/7b9c/tmpduyx_axy/chr22.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/"
2023-07-05 16:01:31.787412: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/da1e/8c62/tmpi2y9rtti/chr21.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/da1e/8c62/tmpi2y9rtti/chr21.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 145.6021 seconds and 7.2 Gi memory with job-memory 16.4 Gi. Percent utilization: 44.05
2023-07-05 16:01:31.787692: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/da1e/8c62/tmpi2y9rtti/chr21.vg.gfa"
2023-07-05 16:01:31.790326: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/da1e/8c62/tmpi2y9rtti/chr21.vg.gfa" in 0.0019 seconds and 1.6 Mi memory
2023-07-05 16:01:31.790429: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/da1e/8c62/tmpi2y9rtti/chr21.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/"
2023-07-05 16:01:31.876940: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/f3b9/7b9c/tmpduyx_axy/chr22.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/'" in 3.0264 seconds and 32.2 Mi memory
2023-07-05 16:01:31.877192: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/f3b9/7b9c/tmpduyx_axy/chr22.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 16:01:34.396682: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/da1e/8c62/tmpi2y9rtti/chr21.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/'" in 2.6057 seconds and 15.6 Mi memory
2023-07-05 16:01:34.396945: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/da1e/8c62/tmpi2y9rtti/chr21.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 16:02:46.434238: Running the command: "halMergeChroms chr1.hal,chr10.hal,chr11.hal,chr12.hal,chr13.hal,chr14.hal,chr15.hal,chr16.hal,chr17.hal,chr18.hal,chr19.hal,chr2.hal,chr20.hal,chr21.hal,chr22.hal,chr3.hal,chr4.hal,chr5.hal,chr6.hal,chr7.hal,chr8.hal,chr9.hal,chrEBV.hal,chrM.hal,chrOther.hal,chrX.hal,chrY.hal __merged__.hal --progress"
2023-07-05 16:03:07.935529: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/e7c0/23ab/tmpie2ld615/chr20.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/e7c0/23ab/tmpie2ld615/chr20.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 224.7141 seconds and 10.2 Gi memory with job-memory 23.1 Gi. Percent utilization: 44.14
2023-07-05 16:03:07.935810: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/e7c0/23ab/tmpie2ld615/chr20.vg.gfa"
2023-07-05 16:03:07.940710: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/e7c0/23ab/tmpie2ld615/chr20.vg.gfa" in 0.004 seconds and 1.7 Mi memory
2023-07-05 16:03:07.940934: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/e7c0/23ab/tmpie2ld615/chr20.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/"
2023-07-05 16:03:10.312969: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/e7c0/23ab/tmpie2ld615/chr20.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/'" in 2.3713 seconds and 20.3 Mi memory
2023-07-05 16:03:10.313235: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/e7c0/23ab/tmpie2ld615/chr20.vg.gfaffixed.gfa | vg mod -u -"
24 jobs are running, 0 jobs are issued and waiting to run
2023-07-05 16:03:29.635507: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/1dd1/f74f/tmp2go1i3n2/chr19.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/1dd1/f74f/tmp2go1i3n2/chr19.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 241.606 seconds and 10.9 Gi memory with job-memory 24.7 Gi. Percent utilization: 44.16
2023-07-05 16:03:29.635781: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1dd1/f74f/tmp2go1i3n2/chr19.vg.gfa"
2023-07-05 16:03:29.638596: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/1dd1/f74f/tmp2go1i3n2/chr19.vg.gfa" in 0.002 seconds and 1.6 Mi memory
2023-07-05 16:03:29.638778: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/1dd1/f74f/tmp2go1i3n2/chr19.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/"
2023-07-05 16:03:32.147636: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/1dd1/f74f/tmp2go1i3n2/chr19.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/'" in 2.5082 seconds and 21.7 Mi memory
2023-07-05 16:03:32.147977: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/1dd1/f74f/tmp2go1i3n2/chr19.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 16:03:39.953530: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/6cd4/c2c0/tmpcqd_j7zj/chr18.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/6cd4/c2c0/tmpcqd_j7zj/chr18.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 253.4723 seconds and 10.9 Gi memory with job-memory 24.5 Gi. Percent utilization: 44.43
2023-07-05 16:03:39.953806: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6cd4/c2c0/tmpcqd_j7zj/chr18.vg.gfa"
2023-07-05 16:03:39.956675: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/6cd4/c2c0/tmpcqd_j7zj/chr18.vg.gfa" in 0.0021 seconds and 1.7 Mi memory
2023-07-05 16:03:39.956857: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/6cd4/c2c0/tmpcqd_j7zj/chr18.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/"
2023-07-05 16:03:42.462406: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/6cd4/c2c0/tmpcqd_j7zj/chr18.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/'" in 2.5048 seconds and 23.0 Mi memory
2023-07-05 16:03:42.462677: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/6cd4/c2c0/tmpcqd_j7zj/chr18.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 16:04:00.838113: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fff/88da/tmprm49zpq7/chr15.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fff/88da/tmprm49zpq7/chr15.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 269.5951 seconds and 11.9 Gi memory with job-memory 27.2 Gi. Percent utilization: 43.69
2023-07-05 16:04:00.838389: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fff/88da/tmprm49zpq7/chr15.vg.gfa"
2023-07-05 16:04:00.842457: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fff/88da/tmprm49zpq7/chr15.vg.gfa" in 0.0032 seconds and 1.6 Mi memory
2023-07-05 16:04:00.842645: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fff/88da/tmprm49zpq7/chr15.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/"
2023-07-05 16:04:01.012195: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/76ae/506d/tmpvedxzlw0/chr17.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/76ae/506d/tmpvedxzlw0/chr17.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 269.4449 seconds and 11.8 Gi memory with job-memory 27.1 Gi. Percent utilization: 43.42
2023-07-05 16:04:01.012474: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/76ae/506d/tmpvedxzlw0/chr17.vg.gfa"
2023-07-05 16:04:01.015284: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/76ae/506d/tmpvedxzlw0/chr17.vg.gfa" in 0.002 seconds and 1.6 Mi memory
2023-07-05 16:04:01.015468: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/76ae/506d/tmpvedxzlw0/chr17.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/"
2023-07-05 16:04:03.816757: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fff/88da/tmprm49zpq7/chr15.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/'" in 2.9734 seconds and 40.6 Mi memory
2023-07-05 16:04:03.817031: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fff/88da/tmprm49zpq7/chr15.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 16:04:04.153677: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/76ae/506d/tmpvedxzlw0/chr17.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/'" in 3.1375 seconds and 24.9 Mi memory
2023-07-05 16:04:04.153941: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/76ae/506d/tmpvedxzlw0/chr17.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 16:04:25.560275: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/467e/8515/tmp6c1vh5k4/chr14.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/467e/8515/tmp6c1vh5k4/chr14.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 287.2663 seconds and 12.5 Gi memory with job-memory 29.5 Gi. Percent utilization: 42.46
2023-07-05 16:04:25.560550: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/467e/8515/tmp6c1vh5k4/chr14.vg.gfa"
2023-07-05 16:04:25.564649: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/467e/8515/tmp6c1vh5k4/chr14.vg.gfa" in 0.0033 seconds and 1.6 Mi memory
2023-07-05 16:04:25.564832: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/467e/8515/tmp6c1vh5k4/chr14.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/"
2023-07-05 16:04:28.493207: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/467e/8515/tmp6c1vh5k4/chr14.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/'" in 2.9277 seconds and 37.1 Mi memory
2023-07-05 16:04:28.493471: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/467e/8515/tmp6c1vh5k4/chr14.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 16:04:39.774526: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/f09d/7fc6/tmpmqc2gi4g/chrX.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/f09d/7fc6/tmpmqc2gi4g/chrX.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 308.4694 seconds and 14.2 Gi memory with job-memory 29.2 Gi. Percent utilization: 48.66
2023-07-05 16:04:39.774796: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/f09d/7fc6/tmpmqc2gi4g/chrX.vg.gfa"
2023-07-05 16:04:39.777714: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/f09d/7fc6/tmpmqc2gi4g/chrX.vg.gfa" in 0.0021 seconds and 1.5 Mi memory
2023-07-05 16:04:39.777898: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/f09d/7fc6/tmpmqc2gi4g/chrX.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/"
2023-07-05 16:04:42.672223: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/f09d/7fc6/tmpmqc2gi4g/chrX.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/'" in 2.8937 seconds and 33.1 Mi memory
2023-07-05 16:04:42.672488: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/f09d/7fc6/tmpmqc2gi4g/chrX.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 16:04:46.689447: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/5eda/4d67/tmpdm56vfim/chr13.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/5eda/4d67/tmpdm56vfim/chr13.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 306.1247 seconds and 13.5 Gi memory with job-memory 30.9 Gi. Percent utilization: 43.51
2023-07-05 16:04:46.689725: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/5eda/4d67/tmpdm56vfim/chr13.vg.gfa"
2023-07-05 16:04:46.692633: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/5eda/4d67/tmpdm56vfim/chr13.vg.gfa" in 0.0021 seconds and 1.5 Mi memory
2023-07-05 16:04:46.692818: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/5eda/4d67/tmpdm56vfim/chr13.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/"
2023-07-05 16:04:49.652120: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/5eda/4d67/tmpdm56vfim/chr13.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/'" in 2.9586 seconds and 35.9 Mi memory
2023-07-05 16:04:49.652379: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/5eda/4d67/tmpdm56vfim/chr13.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 16:05:12.034870: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/9220/bc27/tmpickvnu_k/chr16.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/9220/bc27/tmpickvnu_k/chr16.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 316.1683 seconds and 15.4 Gi memory with job-memory 35.9 Gi. Percent utilization: 42.99
2023-07-05 16:05:12.036030: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/9220/bc27/tmpickvnu_k/chr16.vg.gfa"
2023-07-05 16:05:12.040330: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/9220/bc27/tmpickvnu_k/chr16.vg.gfa" in 0.0034 seconds and 1.7 Mi memory
2023-07-05 16:05:12.040514: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/9220/bc27/tmpickvnu_k/chr16.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/"
2023-07-05 16:05:15.824649: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/9220/bc27/tmpickvnu_k/chr16.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/'" in 3.7835 seconds and 30.2 Mi memory
2023-07-05 16:05:15.824927: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/9220/bc27/tmpickvnu_k/chr16.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 16:05:31.563889: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/da1e/8c62/tmpi2y9rtti/chr21.vg.gfaffixed.gfa | vg mod -u -'" in 237.1662 seconds and 4.5 Gi memory
2023-07-05 16:05:31.564233: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/da1e/8c62/tmpi2y9rtti/chr21.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
2023-07-05 16:05:33.576648: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/f3b9/7b9c/tmpduyx_axy/chr22.vg.gfaffixed.gfa | vg mod -u -'" in 241.6987 seconds and 4.5 Gi memory
2023-07-05 16:05:33.576983: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/f3b9/7b9c/tmpduyx_axy/chr22.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
2023-07-05 16:06:13.800405: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/a0de/f07f/tmppmusc2c8/chr11.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/a0de/f07f/tmppmusc2c8/chr11.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 368.6653 seconds and 17.4 Gi memory with job-memory 41.5 Gi. Percent utilization: 42.02
2023-07-05 16:06:13.800695: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/a0de/f07f/tmppmusc2c8/chr11.vg.gfa"
2023-07-05 16:06:13.804699: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/a0de/f07f/tmppmusc2c8/chr11.vg.gfa" in 0.0032 seconds and 1.5 Mi memory
2023-07-05 16:06:13.804901: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/a0de/f07f/tmppmusc2c8/chr11.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/"
2023-07-05 16:06:14.584230: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/da1e/8c62/tmpi2y9rtti/chr21.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 43.0191 seconds and 1.3 Gi memory with job-memory 16.4 Gi. Percent utilization: 8.226
2023-07-05 16:06:14.584464: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/da1e/8c62/tmpi2y9rtti/chr21.vg.clip"
2023-07-05 16:06:15.020703: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/f3b9/7b9c/tmpduyx_axy/chr22.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 41.4429 seconds and 1.3 Gi memory with job-memory 15.7 Gi. Percent utilization: 8.019
2023-07-05 16:06:15.020924: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/f3b9/7b9c/tmpduyx_axy/chr22.vg.clip"
2023-07-05 16:06:17.745441: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/a0de/f07f/tmppmusc2c8/chr11.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/'" in 3.9398 seconds and 39.2 Mi memory
2023-07-05 16:06:17.745833: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/a0de/f07f/tmppmusc2c8/chr11.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 16:06:29.290970: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/de03/9906/tmpjtxmed47/chr12.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/de03/9906/tmpjtxmed47/chr12.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 385.8921 seconds and 16.8 Gi memory with job-memory 40.3 Gi. Percent utilization: 41.68
2023-07-05 16:06:29.291248: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/de03/9906/tmpjtxmed47/chr12.vg.gfa"
2023-07-05 16:06:29.294062: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/de03/9906/tmpjtxmed47/chr12.vg.gfa" in 0.002 seconds and 1.6 Mi memory
2023-07-05 16:06:29.294245: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/de03/9906/tmpjtxmed47/chr12.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/"
2023-07-05 16:06:34.211320: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/de03/9906/tmpjtxmed47/chr12.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/'" in 4.9164 seconds and 37.9 Mi memory
2023-07-05 16:06:34.211700: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/de03/9906/tmpjtxmed47/chr12.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 16:06:43.497360: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/da1e/8c62/tmpi2y9rtti/chr21.vg.clip" in 28.9118 seconds and 1.1 Gi memory
2023-07-05 16:06:44.431483: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/f3b9/7b9c/tmpduyx_axy/chr22.vg.clip" in 29.4097 seconds and 1.0 Gi memory
Issued job 'vg_to_og' kind-vg_to_og/instance-xt_mzeb1 v1 with job batch system ID: 2835 and disk: 12.5 Gi, memory: 55.8 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_og' kind-vg_to_og/instance-oufyt5ok v1 with job batch system ID: 2836 and disk: 13.1 Gi, memory: 55.8 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 16:07:06.046278: Running the command: "bash -c set -eo pipefail && vg convert -f -W chr22.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 16:07:06.137684: Running the command: "bash -c set -eo pipefail && vg convert -f -W chr21.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 16:07:21.883996: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chr21.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 15.7451 seconds and 1.1 Gi memory with job-memory 55.8 Gi. Percent utilization: 1.922
2023-07-05 16:07:21.884405: Running the command: "odgi build -g chr21.vg.gfa -o chr21.vg.og -t 1"
2023-07-05 16:07:21.899057: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chr22.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 15.8516 seconds and 1.1 Gi memory with job-memory 55.8 Gi. Percent utilization: 1.887
2023-07-05 16:07:21.899464: Running the command: "odgi build -g chr22.vg.gfa -o chr22.vg.og -t 1"
2023-07-05 16:07:44.926321: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/e028/22f1/tmpk4zzm5vc/chr10.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/e028/22f1/tmpk4zzm5vc/chr10.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 457.2111 seconds and 19.3 Gi memory with job-memory 43.3 Gi. Percent utilization: 44.59
2023-07-05 16:07:44.926599: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/e028/22f1/tmpk4zzm5vc/chr10.vg.gfa"
2023-07-05 16:07:44.929676: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/e028/22f1/tmpk4zzm5vc/chr10.vg.gfa" in 0.0022 seconds and 1.5 Mi memory
2023-07-05 16:07:44.929876: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/e028/22f1/tmpk4zzm5vc/chr10.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/"
2023-07-05 16:07:49.213611: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/e028/22f1/tmpk4zzm5vc/chr10.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/'" in 4.283 seconds and 41.2 Mi memory
2023-07-05 16:07:49.213984: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/e028/22f1/tmpk4zzm5vc/chr10.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 16:08:08.747952: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/0fb0/6f2f/tmp054zsba1/chr9.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/0fb0/6f2f/tmp054zsba1/chr9.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 461.1566 seconds and 21.5 Gi memory with job-memory 51.5 Gi. Percent utilization: 41.76
2023-07-05 16:08:08.748181: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/0fb0/6f2f/tmp054zsba1/chr9.vg.gfa"
2023-07-05 16:08:08.752856: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/0fb0/6f2f/tmp054zsba1/chr9.vg.gfa" in 0.0039 seconds and 1.6 Mi memory
2023-07-05 16:08:08.753015: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/0fb0/6f2f/tmp054zsba1/chr9.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/"
2023-07-05 16:08:15.001416: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/0fb0/6f2f/tmp054zsba1/chr9.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/'" in 6.2478 seconds and 70.4 Mi memory
2023-07-05 16:08:15.001672: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/0fb0/6f2f/tmp054zsba1/chr9.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 16:08:44.475590: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f2c/9d0c/tmpa0_rren4/chr7.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f2c/9d0c/tmpa0_rren4/chr7.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 502.0012 seconds and 22.6 Gi memory with job-memory 52.5 Gi. Percent utilization: 43.05
2023-07-05 16:08:44.475867: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f2c/9d0c/tmpa0_rren4/chr7.vg.gfa"
2023-07-05 16:08:44.479367: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f2c/9d0c/tmpa0_rren4/chr7.vg.gfa" in 0.0027 seconds and 1.6 Mi memory
2023-07-05 16:08:44.479548: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f2c/9d0c/tmpa0_rren4/chr7.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/"
2023-07-05 16:08:46.097726: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/29e7/66e5/tmpmgcz99_p/chr8.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/29e7/66e5/tmpmgcz99_p/chr8.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 508.906 seconds and 20.9 Gi memory with job-memory 48.0 Gi. Percent utilization: 43.64
2023-07-05 16:08:46.097992: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/29e7/66e5/tmpmgcz99_p/chr8.vg.gfa"
2023-07-05 16:08:46.100900: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/29e7/66e5/tmpmgcz99_p/chr8.vg.gfa" in 0.0021 seconds and 1.6 Mi memory
2023-07-05 16:08:46.101092: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/29e7/66e5/tmpmgcz99_p/chr8.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/"
2023-07-05 16:08:49.597341: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f2c/9d0c/tmpa0_rren4/chr7.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/'" in 5.1171 seconds and 48.1 Mi memory
2023-07-05 16:08:49.597719: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f2c/9d0c/tmpa0_rren4/chr7.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 16:08:51.202384: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/29e7/66e5/tmpmgcz99_p/chr8.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/'" in 5.1006 seconds and 45.9 Mi memory
2023-07-05 16:08:51.202776: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/29e7/66e5/tmpmgcz99_p/chr8.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 16:09:14.886045: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/e7c0/23ab/tmpie2ld615/chr20.vg.gfaffixed.gfa | vg mod -u -'" in 364.5721 seconds and 7.3 Gi memory
2023-07-05 16:09:14.886375: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/e7c0/23ab/tmpie2ld615/chr20.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
2023-07-05 16:09:34.117812: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/2cbf/ec90/tmpbt8d2gn2/chr6.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/2cbf/ec90/tmpbt8d2gn2/chr6.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 551.102 seconds and 22.4 Gi memory with job-memory 52.1 Gi. Percent utilization: 42.98
2023-07-05 16:09:34.118079: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/2cbf/ec90/tmpbt8d2gn2/chr6.vg.gfa"
2023-07-05 16:09:34.120947: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/2cbf/ec90/tmpbt8d2gn2/chr6.vg.gfa" in 0.0021 seconds and 1.6 Mi memory
2023-07-05 16:09:34.121145: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/2cbf/ec90/tmpbt8d2gn2/chr6.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/"
2023-07-05 16:09:38.869021: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/2cbf/ec90/tmpbt8d2gn2/chr6.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/'" in 4.7471 seconds and 50.1 Mi memory
2023-07-05 16:09:38.869406: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/2cbf/ec90/tmpbt8d2gn2/chr6.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 16:09:54.038100: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/1dd1/f74f/tmp2go1i3n2/chr19.vg.gfaffixed.gfa | vg mod -u -'" in 381.8893 seconds and 7.1 Gi memory
2023-07-05 16:09:54.038427: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/1dd1/f74f/tmp2go1i3n2/chr19.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
2023-07-05 16:09:57.773555: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/aa81/5255/tmpd208gvzq/chr5.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/aa81/5255/tmpd208gvzq/chr5.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 570.8341 seconds and 23.8 Gi memory with job-memory 54.7 Gi. Percent utilization: 43.49
2023-07-05 16:09:57.773838: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/aa81/5255/tmpd208gvzq/chr5.vg.gfa"
2023-07-05 16:09:57.776710: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/aa81/5255/tmpd208gvzq/chr5.vg.gfa" in 0.0021 seconds and 1.7 Mi memory
2023-07-05 16:09:57.776892: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/aa81/5255/tmpd208gvzq/chr5.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/"
2023-07-05 16:10:03.156964: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/aa81/5255/tmpd208gvzq/chr5.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/'" in 5.3793 seconds and 52.6 Mi memory
2023-07-05 16:10:03.157344: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/aa81/5255/tmpd208gvzq/chr5.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 16:10:13.917033: Successfully ran: "odgi build -g chr22.vg.gfa -o chr22.vg.og -t 1" in 172.0166 seconds and 2.6 Gi memory with job-memory 55.8 Gi. Percent utilization: 4.696
2023-07-05 16:10:14.140331: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/6cd4/c2c0/tmpcqd_j7zj/chr18.vg.gfaffixed.gfa | vg mod -u -'" in 391.6759 seconds and 8.5 Gi memory
2023-07-05 16:10:14.140652: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/6cd4/c2c0/tmpcqd_j7zj/chr18.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
2023-07-05 16:10:18.482005: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/e7c0/23ab/tmpie2ld615/chr20.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 63.5947 seconds and 1.9 Gi memory with job-memory 23.1 Gi. Percent utilization: 8.043
2023-07-05 16:10:18.482211: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/e7c0/23ab/tmpie2ld615/chr20.vg.clip"
2023-07-05 16:10:31.353700: Successfully ran: "odgi build -g chr21.vg.gfa -o chr21.vg.og -t 1" in 189.4681 seconds and 2.9 Gi memory with job-memory 55.8 Gi. Percent utilization: 5.123
2023-07-05 16:10:45.633930: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/b078/06bb/tmpztfg83d0/chr3.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/b078/06bb/tmpztfg83d0/chr3.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 614.7239 seconds and 24.9 Gi memory with job-memory 58.4 Gi. Percent utilization: 42.67
2023-07-05 16:10:45.634197: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/b078/06bb/tmpztfg83d0/chr3.vg.gfa"
2023-07-05 16:10:45.637104: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/b078/06bb/tmpztfg83d0/chr3.vg.gfa" in 0.0021 seconds and 1.6 Mi memory
2023-07-05 16:10:45.637295: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/b078/06bb/tmpztfg83d0/chr3.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/"
2023-07-05 16:10:51.694727: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/b078/06bb/tmpztfg83d0/chr3.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/'" in 6.0567 seconds and 54.6 Mi memory
2023-07-05 16:10:51.695163: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/b078/06bb/tmpztfg83d0/chr3.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 16:11:04.735502: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/e7c0/23ab/tmpie2ld615/chr20.vg.clip" in 46.2524 seconds and 1.5 Gi memory
2023-07-05 16:11:08.126483: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/b379/49be/tmpr0aj62tt/chr4.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/b379/49be/tmpr0aj62tt/chr4.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 634.6366 seconds and 25.9 Gi memory with job-memory 61.1 Gi. Percent utilization: 42.4
2023-07-05 16:11:08.126746: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/b379/49be/tmpr0aj62tt/chr4.vg.gfa"
2023-07-05 16:11:08.129624: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/b379/49be/tmpr0aj62tt/chr4.vg.gfa" in 0.002 seconds and 1.7 Mi memory
2023-07-05 16:11:08.129808: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/b379/49be/tmpr0aj62tt/chr4.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/"
Issued job 'vg_to_og' kind-vg_to_og/instance-tcdjf4p5 v1 with job batch system ID: 2837 and disk: 18.5 Gi, memory: 55.8 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 16:11:13.220610: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/76ae/506d/tmpvedxzlw0/chr17.vg.gfaffixed.gfa | vg mod -u -'" in 429.0659 seconds and 9.0 Gi memory
2023-07-05 16:11:13.220942: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/76ae/506d/tmpvedxzlw0/chr17.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
2023-07-05 16:11:13.997166: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/b379/49be/tmpr0aj62tt/chr4.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/'" in 5.8666 seconds and 57.2 Mi memory
2023-07-05 16:11:13.997565: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/b379/49be/tmpr0aj62tt/chr4.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 16:11:16.333913: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fff/88da/tmprm49zpq7/chr15.vg.gfaffixed.gfa | vg mod -u -'" in 432.5161 seconds and 9.1 Gi memory
2023-07-05 16:11:16.334240: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fff/88da/tmprm49zpq7/chr15.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
2023-07-05 16:11:16.944191: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/1dd1/f74f/tmp2go1i3n2/chr19.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 82.905 seconds and 2.0 Gi memory with job-memory 24.7 Gi. Percent utilization: 8.106
2023-07-05 16:11:16.944406: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/1dd1/f74f/tmp2go1i3n2/chr19.vg.clip"
2023-07-05 16:11:31.430113: Running the command: "bash -c set -eo pipefail && vg convert -f -W chr20.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 16:11:34.364342: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/6cd4/c2c0/tmpcqd_j7zj/chr18.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 80.2229 seconds and 2.0 Gi memory with job-memory 24.5 Gi. Percent utilization: 8.234
2023-07-05 16:11:34.364549: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/6cd4/c2c0/tmpcqd_j7zj/chr18.vg.clip"
2023-07-05 16:11:54.316246: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chr20.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 22.885 seconds and 1.5 Gi memory with job-memory 55.8 Gi. Percent utilization: 2.626
2023-07-05 16:11:54.316652: Running the command: "odgi build -g chr20.vg.gfa -o chr20.vg.og -t 1"
2023-07-05 16:12:07.661287: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/1dd1/f74f/tmp2go1i3n2/chr19.vg.clip" in 50.716 seconds and 1.5 Gi memory
Issued job 'vg_to_og' kind-vg_to_og/instance-1bpmgifa v1 with job batch system ID: 2838 and disk: 19.7 Gi, memory: 55.8 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 16:12:19.996262: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/467e/8515/tmp6c1vh5k4/chr14.vg.gfaffixed.gfa | vg mod -u -'" in 471.5021 seconds and 9.9 Gi memory
2023-07-05 16:12:19.996583: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/467e/8515/tmp6c1vh5k4/chr14.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
2023-07-05 16:12:31.724233: Running the command: "bash -c set -eo pipefail && vg convert -f -W chr19.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 16:12:31.837521: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/6cd4/c2c0/tmpcqd_j7zj/chr18.vg.clip" in 57.4721 seconds and 1.6 Gi memory
Issued job 'vg_to_og' kind-vg_to_og/instance-ij8car2j v1 with job batch system ID: 2839 and disk: 19.6 Gi, memory: 55.8 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 16:12:42.052177: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/76ae/506d/tmpvedxzlw0/chr17.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 88.8304 seconds and 2.2 Gi memory with job-memory 27.1 Gi. Percent utilization: 8.227
2023-07-05 16:12:42.052381: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/76ae/506d/tmpvedxzlw0/chr17.vg.clip"
2023-07-05 16:12:46.033555: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fff/88da/tmprm49zpq7/chr15.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 89.6985 seconds and 2.2 Gi memory with job-memory 27.2 Gi. Percent utilization: 8.198
2023-07-05 16:12:46.033765: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fff/88da/tmprm49zpq7/chr15.vg.clip"
2023-07-05 16:12:56.152269: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chr19.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 24.4269 seconds and 1.6 Gi memory with job-memory 55.8 Gi. Percent utilization: 2.812
2023-07-05 16:12:56.152657: Running the command: "odgi build -g chr19.vg.gfa -o chr19.vg.og -t 1"
2023-07-05 16:12:57.144213: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/f09d/7fc6/tmpmqc2gi4g/chrX.vg.gfaffixed.gfa | vg mod -u -'" in 494.4711 seconds and 13.2 Gi memory
2023-07-05 16:12:57.144541: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/f09d/7fc6/tmpmqc2gi4g/chrX.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
2023-07-05 16:13:01.724800: Running the command: "bash -c set -eo pipefail && vg convert -f -W chr18.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 16:13:08.603984: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/5eda/4d67/tmpdm56vfim/chr13.vg.gfaffixed.gfa | vg mod -u -'" in 498.9509 seconds and 10.7 Gi memory
2023-07-05 16:13:08.604312: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/5eda/4d67/tmpdm56vfim/chr13.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
2023-07-05 16:13:25.735533: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chr18.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 24.0096 seconds and 1.6 Gi memory with job-memory 55.8 Gi. Percent utilization: 2.806
2023-07-05 16:13:25.735939: Running the command: "odgi build -g chr18.vg.gfa -o chr18.vg.og -t 1"
2023-07-05 16:13:44.243658: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/76ae/506d/tmpvedxzlw0/chr17.vg.clip" in 62.1904 seconds and 1.7 Gi memory
Issued job 'vg_to_og' kind-vg_to_og/instance-8p3s6bss v1 with job batch system ID: 2840 and disk: 21.7 Gi, memory: 55.8 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 16:13:47.736469: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/33fa/a3a8/tmpniby2yup/chr2.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/33fa/a3a8/tmpniby2yup/chr2.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 778.3185 seconds and 31.1 Gi memory with job-memory 73.6 Gi. Percent utilization: 42.23
2023-07-05 16:13:47.736760: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/33fa/a3a8/tmpniby2yup/chr2.vg.gfa"
2023-07-05 16:13:47.739656: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/33fa/a3a8/tmpniby2yup/chr2.vg.gfa" in 0.002 seconds and 1.6 Mi memory
2023-07-05 16:13:47.739843: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/33fa/a3a8/tmpniby2yup/chr2.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/"
2023-07-05 16:13:49.593499: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/9fff/88da/tmprm49zpq7/chr15.vg.clip" in 63.5589 seconds and 1.7 Gi memory
Issued job 'vg_to_og' kind-vg_to_og/instance-wrp__94d v1 with job batch system ID: 2841 and disk: 21.7 Gi, memory: 55.8 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 16:13:54.702318: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/33fa/a3a8/tmpniby2yup/chr2.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/'" in 6.9617 seconds and 71.4 Mi memory
2023-07-05 16:13:54.702711: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/33fa/a3a8/tmpniby2yup/chr2.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 16:13:55.552568: Successfully ran: "gfaffix /data/tmp/9eeeec3d467250f1999ba98b3759d207/c161/6db7/tmpxtpz6t4k/chr1.vg.gfa --output_refined /data/tmp/9eeeec3d467250f1999ba98b3759d207/c161/6db7/tmpxtpz6t4k/chr1.vg.gfaffixed.gfa --check_transformation --dont_collapse 'GRCh38*'" in 779.361 seconds and 32.4 Gi memory with job-memory 77.7 Gi. Percent utilization: 41.67
2023-07-05 16:13:55.552852: Running the command: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/c161/6db7/tmpxtpz6t4k/chr1.vg.gfa"
2023-07-05 16:13:55.555745: Successfully ran: "head -1 /data/tmp/9eeeec3d467250f1999ba98b3759d207/c161/6db7/tmpxtpz6t4k/chr1.vg.gfa" in 0.0021 seconds and 1.7 Mi memory
2023-07-05 16:13:55.555929: Running the command: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/c161/6db7/tmpxtpz6t4k/chr1.vg.gfaffixed.gfa -e 1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/"
2023-07-05 16:13:59.680592: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/467e/8515/tmp6c1vh5k4/chr14.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 99.6832 seconds and 2.5 Gi memory with job-memory 29.5 Gi. Percent utilization: 8.38
2023-07-05 16:13:59.680807: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/467e/8515/tmp6c1vh5k4/chr14.vg.clip"
2023-07-05 16:14:03.958616: Successfully ran: "sed -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/c161/6db7/tmpxtpz6t4k/chr1.vg.gfaffixed.gfa -e '1s/.*/H	VN:Z:1.1	RS:Z:GRCh38 CHM13 _MINIGRAPH_/'" in 8.4019 seconds and 65.1 Mi memory
2023-07-05 16:14:03.959023: Running the command: "bash -c set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/c161/6db7/tmpxtpz6t4k/chr1.vg.gfaffixed.gfa | vg mod -u -"
2023-07-05 16:14:04.309530: Running the command: "bash -c set -eo pipefail && vg convert -f -W chr17.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 16:14:04.331943: Running the command: "bash -c set -eo pipefail && vg convert -f -W chr15.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 16:14:29.557649: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chr17.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 25.2471 seconds and 1.7 Gi memory with job-memory 55.8 Gi. Percent utilization: 3.093
2023-07-05 16:14:29.558050: Running the command: "odgi build -g chr17.vg.gfa -o chr17.vg.og -t 1"
2023-07-05 16:14:29.810180: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chr15.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 25.4771 seconds and 1.8 Gi memory with job-memory 55.8 Gi. Percent utilization: 3.14
2023-07-05 16:14:29.810590: Running the command: "odgi build -g chr15.vg.gfa -o chr15.vg.og -t 1"
2023-07-05 16:14:43.550760: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/9220/bc27/tmpickvnu_k/chr16.vg.gfaffixed.gfa | vg mod -u -'" in 567.725 seconds and 10.2 Gi memory
2023-07-05 16:14:43.551108: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/9220/bc27/tmpickvnu_k/chr16.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
2023-07-05 16:14:46.151253: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/f09d/7fc6/tmpmqc2gi4g/chrX.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 109.0059 seconds and 2.4 Gi memory with job-memory 29.2 Gi. Percent utilization: 8.354
2023-07-05 16:14:46.151467: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/f09d/7fc6/tmpmqc2gi4g/chrX.vg.clip"
2023-07-05 16:14:56.985217: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/5eda/4d67/tmpdm56vfim/chr13.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 108.3801 seconds and 2.6 Gi memory with job-memory 30.9 Gi. Percent utilization: 8.288
2023-07-05 16:14:56.985421: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/5eda/4d67/tmpdm56vfim/chr13.vg.clip"
2023-07-05 16:15:10.272515: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/467e/8515/tmp6c1vh5k4/chr14.vg.clip" in 70.5909 seconds and 2.0 Gi memory
Issued job 'vg_to_og' kind-vg_to_og/instance-59o84ol5 v1 with job batch system ID: 2842 and disk: 23.6 Gi, memory: 55.8 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 16:15:32.169240: Running the command: "bash -c set -eo pipefail && vg convert -f -W chr14.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 16:15:57.199602: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/f09d/7fc6/tmpmqc2gi4g/chrX.vg.clip" in 71.0473 seconds and 1.9 Gi memory
2023-07-05 16:16:00.528717: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chr14.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 28.3584 seconds and 2.0 Gi memory with job-memory 55.8 Gi. Percent utilization: 3.542
2023-07-05 16:16:00.529110: Running the command: "odgi build -g chr14.vg.gfa -o chr14.vg.og -t 1"
Issued job 'vg_to_og' kind-vg_to_og/instance-kknig0lb v1 with job batch system ID: 2843 and disk: 23.4 Gi, memory: 55.8 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 16:16:05.784867: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/5eda/4d67/tmpdm56vfim/chr13.vg.clip" in 68.7986 seconds and 2.0 Gi memory
Issued job 'vg_to_og' kind-vg_to_og/instance-8w1iqe4x v1 with job batch system ID: 2844 and disk: 24.7 Gi, memory: 55.8 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 16:16:23.753488: Successfully ran: "odgi build -g chr20.vg.gfa -o chr20.vg.og -t 1" in 269.4359 seconds and 3.9 Gi memory with job-memory 55.8 Gi. Percent utilization: 7.031
2023-07-05 16:16:31.155213: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/9220/bc27/tmpickvnu_k/chr16.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 107.6033 seconds and 2.9 Gi memory with job-memory 35.9 Gi. Percent utilization: 8.149
2023-07-05 16:16:31.155436: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/9220/bc27/tmpickvnu_k/chr16.vg.clip"
2023-07-05 16:16:32.934933: Running the command: "bash -c set -eo pipefail && vg convert -f -W chr13.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 16:16:34.301837: Running the command: "bash -c set -eo pipefail && vg convert -f -W chrX.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 16:17:03.068005: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chrX.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 28.7651 seconds and 1.9 Gi memory with job-memory 55.8 Gi. Percent utilization: 3.349
2023-07-05 16:17:03.068402: Running the command: "odgi build -g chrX.vg.gfa -o chrX.vg.og -t 1"
2023-07-05 16:17:03.178594: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chr13.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 30.2425 seconds and 2.0 Gi memory with job-memory 55.8 Gi. Percent utilization: 3.632
2023-07-05 16:17:03.179048: Running the command: "odgi build -g chr13.vg.gfa -o chr13.vg.og -t 1"
2023-07-05 16:17:13.269941: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/a0de/f07f/tmppmusc2c8/chr11.vg.gfaffixed.gfa | vg mod -u -'" in 655.5233 seconds and 14.4 Gi memory
2023-07-05 16:17:13.270282: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/a0de/f07f/tmppmusc2c8/chr11.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
2023-07-05 16:17:23.234113: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/de03/9906/tmpjtxmed47/chr12.vg.gfaffixed.gfa | vg mod -u -'" in 649.0216 seconds and 14.3 Gi memory
2023-07-05 16:17:23.234446: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/de03/9906/tmpjtxmed47/chr12.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
2023-07-05 16:17:33.104000: Successfully ran: "odgi build -g chr19.vg.gfa -o chr19.vg.og -t 1" in 276.9504 seconds and 4.2 Gi memory with job-memory 55.8 Gi. Percent utilization: 7.538
2023-07-05 16:17:49.970010: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/9220/bc27/tmpickvnu_k/chr16.vg.clip" in 78.8138 seconds and 2.3 Gi memory
Issued job 'vg_to_og' kind-vg_to_og/instance-q8a79acn v1 with job batch system ID: 2845 and disk: 28.7 Gi, memory: 57.5 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 16:18:03.148977: Running the command: "bash -c set -eo pipefail && vg convert -f -W chr16.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 16:18:28.676047: Successfully ran: "odgi build -g chr18.vg.gfa -o chr18.vg.og -t 1" in 302.9391 seconds and 4.3 Gi memory with job-memory 55.8 Gi. Percent utilization: 7.697
2023-07-05 16:18:41.080014: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chr16.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 37.9299 seconds and 2.4 Gi memory with job-memory 57.5 Gi. Percent utilization: 4.109
2023-07-05 16:18:41.080453: Running the command: "odgi build -g chr16.vg.gfa -o chr16.vg.og -t 1"
2023-07-05 16:19:20.016321: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/e028/22f1/tmpk4zzm5vc/chr10.vg.gfaffixed.gfa | vg mod -u -'" in 690.8015 seconds and 14.6 Gi memory
2023-07-05 16:19:20.016644: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/e028/22f1/tmpk4zzm5vc/chr10.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
2023-07-05 16:19:30.971399: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/a0de/f07f/tmppmusc2c8/chr11.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 137.7003 seconds and 3.5 Gi memory with job-memory 41.5 Gi. Percent utilization: 8.323
2023-07-05 16:19:30.971613: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/a0de/f07f/tmppmusc2c8/chr11.vg.clip"
2023-07-05 16:19:40.883928: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/de03/9906/tmpjtxmed47/chr12.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 137.6487 seconds and 3.4 Gi memory with job-memory 40.3 Gi. Percent utilization: 8.341
2023-07-05 16:19:40.884142: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/de03/9906/tmpjtxmed47/chr12.vg.clip"
2023-07-05 16:19:43.705807: Successfully ran: "odgi build -g chr15.vg.gfa -o chr15.vg.og -t 1" in 313.8942 seconds and 4.6 Gi memory with job-memory 55.8 Gi. Percent utilization: 8.251
2023-07-05 16:19:50.089853: Successfully ran: "odgi build -g chr17.vg.gfa -o chr17.vg.og -t 1" in 320.5308 seconds and 4.6 Gi memory with job-memory 55.8 Gi. Percent utilization: 8.283
2023-07-05 16:21:10.336774: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/a0de/f07f/tmppmusc2c8/chr11.vg.clip" in 99.3643 seconds and 2.6 Gi memory
Issued job 'vg_to_og' kind-vg_to_og/instance-vx41xx0o v1 with job batch system ID: 2846 and disk: 33.2 Gi, memory: 66.4 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 16:21:19.210618: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/de03/9906/tmpjtxmed47/chr12.vg.clip" in 98.3256 seconds and 2.6 Gi memory
2023-07-05 16:21:23.129210: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/0fb0/6f2f/tmp054zsba1/chr9.vg.gfaffixed.gfa | vg mod -u -'" in 788.1268 seconds and 14.8 Gi memory
2023-07-05 16:21:23.129534: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/0fb0/6f2f/tmp054zsba1/chr9.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
Issued job 'vg_to_og' kind-vg_to_og/instance-7_dfy04y v1 with job batch system ID: 2847 and disk: 32.2 Gi, memory: 64.5 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 16:21:35.214548: Running the command: "bash -c set -eo pipefail && vg convert -f -W chr12.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 16:21:35.338809: Running the command: "bash -c set -eo pipefail && vg convert -f -W chr11.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 16:21:35.971225: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/29e7/66e5/tmpmgcz99_p/chr8.vg.gfaffixed.gfa | vg mod -u -'" in 764.7676 seconds and 15.8 Gi memory
2023-07-05 16:21:35.971566: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/29e7/66e5/tmpmgcz99_p/chr8.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
2023-07-05 16:21:42.785339: Successfully ran: "odgi build -g chr14.vg.gfa -o chr14.vg.og -t 1" in 342.2553 seconds and 5.0 Gi memory with job-memory 55.8 Gi. Percent utilization: 8.914
2023-07-05 16:21:45.952771: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/e028/22f1/tmpk4zzm5vc/chr10.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 145.9353 seconds and 3.6 Gi memory with job-memory 43.3 Gi. Percent utilization: 8.354
2023-07-05 16:21:45.952982: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/e028/22f1/tmpk4zzm5vc/chr10.vg.clip"
2023-07-05 16:22:14.060496: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chr12.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 38.8448 seconds and 2.6 Gi memory with job-memory 64.5 Gi. Percent utilization: 4.032
2023-07-05 16:22:14.060922: Running the command: "odgi build -g chr12.vg.gfa -o chr12.vg.og -t 1"
2023-07-05 16:22:16.029424: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chr11.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 40.6895 seconds and 2.7 Gi memory with job-memory 66.4 Gi. Percent utilization: 4.029
2023-07-05 16:22:16.029851: Running the command: "odgi build -g chr11.vg.gfa -o chr11.vg.og -t 1"
2023-07-05 16:22:29.753721: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f2c/9d0c/tmpa0_rren4/chr7.vg.gfaffixed.gfa | vg mod -u -'" in 820.1552 seconds and 17.4 Gi memory
2023-07-05 16:22:29.754055: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f2c/9d0c/tmpa0_rren4/chr7.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
2023-07-05 16:23:10.524082: Successfully ran: "odgi build -g chrX.vg.gfa -o chrX.vg.og -t 1" in 367.4538 seconds and 5.3 Gi memory with job-memory 55.8 Gi. Percent utilization: 9.466
2023-07-05 16:23:22.813467: Successfully ran: "odgi build -g chr13.vg.gfa -o chr13.vg.og -t 1" in 379.6334 seconds and 5.3 Gi memory with job-memory 55.8 Gi. Percent utilization: 9.453
2023-07-05 16:23:32.802441: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/e028/22f1/tmpk4zzm5vc/chr10.vg.clip" in 106.8486 seconds and 2.8 Gi memory
2023-07-05 16:23:36.539437: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/2cbf/ec90/tmpbt8d2gn2/chr6.vg.gfaffixed.gfa | vg mod -u -'" in 837.6692 seconds and 18.3 Gi memory
2023-07-05 16:23:36.539763: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/2cbf/ec90/tmpbt8d2gn2/chr6.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
Issued job 'vg_to_og' kind-vg_to_og/instance-mj16yize v1 with job batch system ID: 2848 and disk: 34.6 Gi, memory: 69.2 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 16:23:41.961145: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/0fb0/6f2f/tmp054zsba1/chr9.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 138.8308 seconds and 4.0 Gi memory with job-memory 51.5 Gi. Percent utilization: 7.836
2023-07-05 16:23:41.961366: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/0fb0/6f2f/tmp054zsba1/chr9.vg.clip"
2023-07-05 16:24:04.284994: Running the command: "bash -c set -eo pipefail && vg convert -f -W chr10.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 16:24:36.982819: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/29e7/66e5/tmpmgcz99_p/chr8.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 181.0104 seconds and 4.0 Gi memory with job-memory 48.0 Gi. Percent utilization: 8.441
2023-07-05 16:24:36.983059: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/29e7/66e5/tmpmgcz99_p/chr8.vg.clip"
2023-07-05 16:24:44.474857: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chr10.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 40.1888 seconds and 2.8 Gi memory with job-memory 69.2 Gi. Percent utilization: 4.026
2023-07-05 16:24:44.475310: Running the command: "odgi build -g chr10.vg.gfa -o chr10.vg.og -t 1"
2023-07-05 16:24:46.227387: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/aa81/5255/tmpd208gvzq/chr5.vg.gfaffixed.gfa | vg mod -u -'" in 883.0692 seconds and 19.4 Gi memory
2023-07-05 16:24:46.227719: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/aa81/5255/tmpd208gvzq/chr5.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
2023-07-05 16:25:21.843987: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/0fb0/6f2f/tmp054zsba1/chr9.vg.clip" in 99.8817 seconds and 3.2 Gi memory
2023-07-05 16:25:24.110491: Successfully ran: "odgi build -g chr16.vg.gfa -o chr16.vg.og -t 1" in 403.0291 seconds and 6.2 Gi memory with job-memory 57.5 Gi. Percent utilization: 10.83
Issued job 'vg_to_og' kind-vg_to_og/instance-6wycaau5 v1 with job batch system ID: 2849 and disk: 41.2 Gi, memory: 82.4 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 16:25:32.585515: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f2c/9d0c/tmpa0_rren4/chr7.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 182.8306 seconds and 4.4 Gi memory with job-memory 52.5 Gi. Percent utilization: 8.364
2023-07-05 16:25:32.585725: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f2c/9d0c/tmpa0_rren4/chr7.vg.clip"
2023-07-05 16:26:05.780927: Running the command: "bash -c set -eo pipefail && vg convert -f -W chr9.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 16:26:38.500697: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/29e7/66e5/tmpmgcz99_p/chr8.vg.clip" in 121.5167 seconds and 3.1 Gi memory
2023-07-05 16:26:42.707533: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/b078/06bb/tmpztfg83d0/chr3.vg.gfaffixed.gfa | vg mod -u -'" in 951.0115 seconds and 21.1 Gi memory
2023-07-05 16:26:42.707862: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/b078/06bb/tmpztfg83d0/chr3.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
Issued job 'vg_to_og' kind-vg_to_og/instance-ax_27kf2 v1 with job batch system ID: 2850 and disk: 38.4 Gi, memory: 76.7 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 16:27:02.234478: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/2cbf/ec90/tmpbt8d2gn2/chr6.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 205.6939 seconds and 4.4 Gi memory with job-memory 52.1 Gi. Percent utilization: 8.424
2023-07-05 16:27:02.234692: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/2cbf/ec90/tmpbt8d2gn2/chr6.vg.clip"
2023-07-05 16:27:04.619289: Running the command: "bash -c set -eo pipefail && vg convert -f -W chr8.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 16:27:07.097915: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chr9.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 61.3159 seconds and 3.2 Gi memory with job-memory 82.4 Gi. Percent utilization: 3.901
2023-07-05 16:27:07.098353: Running the command: "odgi build -g chr9.vg.gfa -o chr9.vg.og -t 1"
2023-07-05 16:27:16.308730: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/b379/49be/tmpr0aj62tt/chr4.vg.gfaffixed.gfa | vg mod -u -'" in 962.3103 seconds and 20.7 Gi memory
2023-07-05 16:27:16.309070: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/b379/49be/tmpr0aj62tt/chr4.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
2023-07-05 16:27:40.826495: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/3f2c/9d0c/tmpa0_rren4/chr7.vg.clip" in 128.2399 seconds and 3.3 Gi memory
Issued job 'vg_to_og' kind-vg_to_og/instance-qqbciqs2 v1 with job batch system ID: 2851 and disk: 42.0 Gi, memory: 84.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 16:27:51.491079: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chr8.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 46.8707 seconds and 3.1 Gi memory with job-memory 76.7 Gi. Percent utilization: 4.033
2023-07-05 16:27:51.491523: Running the command: "odgi build -g chr8.vg.gfa -o chr8.vg.og -t 1"
2023-07-05 16:28:00.233807: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/aa81/5255/tmpd208gvzq/chr5.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 194.0053 seconds and 4.6 Gi memory with job-memory 54.7 Gi. Percent utilization: 8.42
2023-07-05 16:28:00.234021: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/aa81/5255/tmpd208gvzq/chr5.vg.clip"
2023-07-05 16:28:05.352663: Running the command: "bash -c set -eo pipefail && vg convert -f -W chr7.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 16:28:54.780840: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chr7.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 49.4271 seconds and 3.3 Gi memory with job-memory 84.0 Gi. Percent utilization: 3.978
2023-07-05 16:28:54.781274: Running the command: "odgi build -g chr7.vg.gfa -o chr7.vg.og -t 1"
2023-07-05 16:29:12.473210: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/2cbf/ec90/tmpbt8d2gn2/chr6.vg.clip" in 130.2377 seconds and 3.3 Gi memory
Issued job 'vg_to_og' kind-vg_to_og/instance-ak5hbhub v1 with job batch system ID: 2852 and disk: 41.7 Gi, memory: 83.4 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 16:29:34.984128: Running the command: "bash -c set -eo pipefail && vg convert -f -W chr6.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 16:30:19.933077: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/aa81/5255/tmpd208gvzq/chr5.vg.clip" in 139.6982 seconds and 3.5 Gi memory
2023-07-05 16:30:21.620179: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chr6.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 46.635 seconds and 3.3 Gi memory with job-memory 83.4 Gi. Percent utilization: 3.978
2023-07-05 16:30:21.620610: Running the command: "odgi build -g chr6.vg.gfa -o chr6.vg.og -t 1"
2023-07-05 16:30:27.257268: Successfully ran: "odgi build -g chr12.vg.gfa -o chr12.vg.og -t 1" in 493.1954 seconds and 6.9 Gi memory with job-memory 64.5 Gi. Percent utilization: 10.65
Issued job 'vg_to_og' kind-vg_to_og/instance-i1s439wv v1 with job batch system ID: 2853 and disk: 43.8 Gi, memory: 87.6 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 16:30:30.944802: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/b078/06bb/tmpztfg83d0/chr3.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 228.2361 seconds and 4.9 Gi memory with job-memory 58.4 Gi. Percent utilization: 8.369
2023-07-05 16:30:30.945012: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/b078/06bb/tmpztfg83d0/chr3.vg.clip"
2023-07-05 16:30:49.088435: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/b379/49be/tmpr0aj62tt/chr4.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 212.7785 seconds and 5.1 Gi memory with job-memory 61.1 Gi. Percent utilization: 8.39
2023-07-05 16:30:49.088657: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/b379/49be/tmpr0aj62tt/chr4.vg.clip"
2023-07-05 16:30:50.265300: Successfully ran: "odgi build -g chr11.vg.gfa -o chr11.vg.og -t 1" in 514.2345 seconds and 7.1 Gi memory with job-memory 66.4 Gi. Percent utilization: 10.66
2023-07-05 16:31:05.159978: Running the command: "bash -c set -eo pipefail && vg convert -f -W chr5.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 16:31:56.787531: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chr5.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 51.6265 seconds and 3.5 Gi memory with job-memory 87.6 Gi. Percent utilization: 4.003
2023-07-05 16:31:56.787960: Running the command: "odgi build -g chr5.vg.gfa -o chr5.vg.og -t 1"
2023-07-05 16:32:58.606064: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/b078/06bb/tmpztfg83d0/chr3.vg.clip" in 147.6602 seconds and 3.7 Gi memory
Issued job 'vg_to_og' kind-vg_to_og/instance-kw96f4m0 v1 with job batch system ID: 2854 and disk: 46.7 Gi, memory: 93.5 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 16:33:18.028969: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/b379/49be/tmpr0aj62tt/chr4.vg.clip" in 148.9395 seconds and 3.9 Gi memory
Issued job 'vg_to_og' kind-vg_to_og/instance-i6cpo2py v1 with job batch system ID: 2855 and disk: 48.9 Gi, memory: 97.7 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 16:33:27.012764: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/33fa/a3a8/tmpniby2yup/chr2.vg.gfaffixed.gfa | vg mod -u -'" in 1172.3083 seconds and 25.9 Gi memory
2023-07-05 16:33:27.013097: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/33fa/a3a8/tmpniby2yup/chr2.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
2023-07-05 16:33:32.128141: Successfully ran: "odgi build -g chr10.vg.gfa -o chr10.vg.og -t 1" in 527.6519 seconds and 7.4 Gi memory with job-memory 69.2 Gi. Percent utilization: 10.69
2023-07-05 16:33:40.349730: Running the command: "bash -c set -eo pipefail && vg convert -f -W chr3.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 16:33:40.666124: Running the command: "bash -c set -eo pipefail && vg convert -f -W chr4.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 16:34:36.338401: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chr3.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 55.9873 seconds and 3.7 Gi memory with job-memory 93.5 Gi. Percent utilization: 3.986
2023-07-05 16:34:36.338820: Running the command: "odgi build -g chr3.vg.gfa -o chr3.vg.og -t 1"
2023-07-05 16:34:37.958773: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chr4.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 57.2915 seconds and 3.9 Gi memory with job-memory 97.7 Gi. Percent utilization: 3.977
2023-07-05 16:34:37.959218: Running the command: "odgi build -g chr4.vg.gfa -o chr4.vg.og -t 1"
2023-07-05 16:35:03.487062: Successfully ran: "bash -c 'set -eo pipefail && vg convert -g -p /data/tmp/9eeeec3d467250f1999ba98b3759d207/c161/6db7/tmpxtpz6t4k/chr1.vg.gfaffixed.gfa | vg mod -u -'" in 1259.5272 seconds and 26.1 Gi memory
2023-07-05 16:35:03.487390: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/c161/6db7/tmpxtpz6t4k/chr1.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -"
2023-07-05 16:36:08.351956: Successfully ran: "odgi build -g chr9.vg.gfa -o chr9.vg.og -t 1" in 541.2526 seconds and 8.3 Gi memory with job-memory 82.4 Gi. Percent utilization: 10.12
2023-07-05 16:37:39.489127: Successfully ran: "odgi build -g chr8.vg.gfa -o chr8.vg.og -t 1" in 587.9966 seconds and 8.2 Gi memory with job-memory 76.7 Gi. Percent utilization: 10.64
2023-07-05 16:37:55.552802: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/33fa/a3a8/tmpniby2yup/chr2.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 268.5389 seconds and 6.2 Gi memory with job-memory 73.6 Gi. Percent utilization: 8.466
2023-07-05 16:37:55.553012: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/33fa/a3a8/tmpniby2yup/chr2.vg.clip"
2023-07-05 16:39:14.388146: Successfully ran: "odgi build -g chr7.vg.gfa -o chr7.vg.og -t 1" in 619.6059 seconds and 8.9 Gi memory with job-memory 84.0 Gi. Percent utilization: 10.63
2023-07-05 16:39:41.190861: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/c161/6db7/tmpxtpz6t4k/chr1.vg.gfaffixed -f -e GRCh38 -d _MINIGRAPH_ -L | vg clip -d 1 - -P GRCh38 | vg ids -s -'" in 277.7026 seconds and 6.3 Gi memory with job-memory 77.7 Gi. Percent utilization: 8.067
2023-07-05 16:39:41.191090: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/c161/6db7/tmpxtpz6t4k/chr1.vg.clip"
2023-07-05 16:41:00.397920: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/33fa/a3a8/tmpniby2yup/chr2.vg.clip" in 184.8441 seconds and 4.9 Gi memory
2023-07-05 16:41:03.235924: Successfully ran: "odgi build -g chr6.vg.gfa -o chr6.vg.og -t 1" in 641.6144 seconds and 8.9 Gi memory with job-memory 83.4 Gi. Percent utilization: 10.66
Issued job 'vg_to_og' kind-vg_to_og/instance-j0fsl1re v1 with job batch system ID: 2856 and disk: 58.9 Gi, memory: 117.7 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 16:41:37.610309: Running the command: "bash -c set -eo pipefail && vg convert -f -W chr2.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 16:42:36.473585: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/c161/6db7/tmpxtpz6t4k/chr1.vg.clip" in 175.2816 seconds and 5.1 Gi memory
2023-07-05 16:42:43.489835: Successfully ran: "odgi build -g chr5.vg.gfa -o chr5.vg.og -t 1" in 646.7009 seconds and 9.3 Gi memory with job-memory 87.6 Gi. Percent utilization: 10.66
2023-07-05 16:42:44.383382: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chr2.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 66.772 seconds and 4.9 Gi memory with job-memory 117.7 Gi. Percent utilization: 4.154
2023-07-05 16:42:44.383813: Running the command: "odgi build -g chr2.vg.gfa -o chr2.vg.og -t 1"
Issued job 'vg_to_og' kind-vg_to_og/instance-25at7jg_ v1 with job batch system ID: 2857 and disk: 62.1 Gi, memory: 124.3 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 16:43:07.892646: Running the command: "bash -c set -eo pipefail && vg convert -f -W chr1.vg | grep -v '^P	_MINIGRAPH_'"
2023-07-05 16:44:27.742270: Successfully ran: "bash -c 'set -eo pipefail && vg convert -f -W chr1.vg | grep -v '"'"'^P	_MINIGRAPH_'"'"''" in 79.8484 seconds and 5.1 Gi memory with job-memory 124.3 Gi. Percent utilization: 4.138
2023-07-05 16:44:27.742711: Running the command: "odgi build -g chr1.vg.gfa -o chr1.vg.og -t 1"
2023-07-05 16:46:24.842321: Successfully ran: "odgi build -g chr3.vg.gfa -o chr3.vg.og -t 1" in 708.5015 seconds and 9.9 Gi memory with job-memory 93.5 Gi. Percent utilization: 10.59
2023-07-05 16:46:42.189837: Successfully ran: "odgi build -g chr4.vg.gfa -o chr4.vg.og -t 1" in 724.2297 seconds and 10.3 Gi memory with job-memory 97.7 Gi. Percent utilization: 10.52
2023-07-05 16:57:47.702105: Successfully ran: "odgi build -g chr2.vg.gfa -o chr2.vg.og -t 1" in 903.3174 seconds and 12.6 Gi memory with job-memory 117.7 Gi. Percent utilization: 10.71
2023-07-05 16:58:44.966327: Successfully ran: "odgi build -g chr1.vg.gfa -o chr1.vg.og -t 1" in 857.2227 seconds and 12.8 Gi memory with job-memory 124.3 Gi. Percent utilization: 10.32
Issued job 'join_vg' kind-join_vg/instance-_dv_3w9d v1 with job batch system ID: 2858 and disk: 47.1 Gi, memory: 15.5 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 17:00:23.964091: Running the command: "vg ids -j /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr1.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr10.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr11.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr12.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr13.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr14.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr15.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr16.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr17.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr18.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr19.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr2.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr20.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr21.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr22.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr3.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr4.vg /data/t <...> 0f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chrOther.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chrX.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chrY.vg"
2 jobs are running, 0 jobs are issued and waiting to run
2023-07-05 17:08:17.421820: Successfully ran: "vg ids -j /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr1.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr10.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr11.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr12.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr13.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr14.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr15.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr16.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr17.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr18.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr19.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr2.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr20.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr21.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr22.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr3.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chr4.vg /data/tmp/ <...> 59d207/dac3/f288/tmp91uqfuln/chrX.vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/dac3/f288/tmp91uqfuln/chrY.vg" in 473.4564 seconds and 4.9 Gi memory with job-memory 15.5 Gi. Percent utilization: 31.71
Got message from job at time 07-05-2023 17:11:01: Job used more disk than requested. For CWL, consider increasing the outdirMin requirement, otherwise, consider increasing the disk requirement. Job files/for-job/kind-join_vg/instance-_dv_3w9d/cleanup/file-cc4ea2a9574f4dfd99a4d1cf9a3f52ad/stream used 109.58% disk (51.6 GiB [55374405632B] used, 47.1 GiB [50533584714B] requested).
Issued job 'Job' kind-Job/instance-6zl8e6f4 v1 with job batch system ID: 2859 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'Job' kind-Job/instance-2sd8b1fg v1 with job batch system ID: 2860 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-m0rrc70h v1 with job batch system ID: 2861 and disk: 7.8 Gi, memory: 3.9 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-sn2nyce0 v1 with job batch system ID: 2862 and disk: 25.7 Gi, memory: 41.2 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-h1ks1zu1 v1 with job batch system ID: 2863 and disk: 20.2 Gi, memory: 32.2 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-pkm9jzhb v1 with job batch system ID: 2864 and disk: 25.7 Gi, memory: 12.9 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-4ttdqpkt v1 with job batch system ID: 2865 and disk: 38.8 Gi, memory: 62.1 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-ma5v2wx6 v1 with job batch system ID: 2866 and disk: 12.2 Gi, memory: 6.1 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-xau7ncko v1 with job batch system ID: 2867 and disk: 3.3 Mi, memory: 1.7 Mi, cores: 64, accelerators: [], preemptible: False
Issued job 'odgi_squeeze' kind-odgi_squeeze/instance-6468y04y v1 with job batch system ID: 2868 and disk: 188.3 Gi, memory: 235.3 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-6q4zzgal v1 with job batch system ID: 2869 and disk: 29.2 Gi, memory: 46.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-4zoaohjp v1 with job batch system ID: 2870 and disk: 26.2 Gi, memory: 13.1 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-be_7ekwd v1 with job batch system ID: 2871 and disk: 26.0 Gi, memory: 41.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-gp9al4oc v1 with job batch system ID: 2872 and disk: 18.0 Gi, memory: 28.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-qe84o_wj v1 with job batch system ID: 2873 and disk: 20.2 Gi, memory: 10.1 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-j8mnshg3 v1 with job batch system ID: 2874 and disk: 36.8 Gi, memory: 18.4 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-_xv2232t v1 with job batch system ID: 2875 and disk: 13.6 Gi, memory: 6.8 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-1xi0epqu v1 with job batch system ID: 2876 and disk: 27.4 Gi, memory: 13.7 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-d2uao_lu v1 with job batch system ID: 2877 and disk: 14.6 Gi, memory: 23.4 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-qdob4ou8 v1 with job batch system ID: 2878 and disk: 30.5 Gi, memory: 48.9 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-7kc3e82y v1 with job batch system ID: 2879 and disk: 14.8 Gi, memory: 23.6 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-dx9nuaao v1 with job batch system ID: 2880 and disk: 12.3 Gi, memory: 6.2 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-oinv2qzb v1 with job batch system ID: 2881 and disk: 15.5 Gi, memory: 7.7 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-4epao1p7 v1 with job batch system ID: 2882 and disk: 12.3 Gi, memory: 19.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-vkz600lr v1 with job batch system ID: 2883 and disk: 13.6 Gi, memory: 21.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-t3pydnie v1 with job batch system ID: 2884 and disk: 20.8 Gi, memory: 10.4 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-0sn9ie5c v1 with job batch system ID: 2885 and disk: 14.8 Gi, memory: 7.4 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-u3j62_bz v1 with job batch system ID: 2886 and disk: 177.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-txlp3t_q v1 with job batch system ID: 2887 and disk: 27.4 Gi, memory: 43.8 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-i_y_tes8 v1 with job batch system ID: 2888 and disk: 15.5 Gi, memory: 24.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-vgus9fk6 v1 with job batch system ID: 2889 and disk: 38.8 Gi, memory: 19.4 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-n5tl1ayx v1 with job batch system ID: 2890 and disk: 14.6 Gi, memory: 7.3 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-iqj0g_of v1 with job batch system ID: 2891 and disk: 29.2 Gi, memory: 14.6 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-zf759k99 v1 with job batch system ID: 2892 and disk: 20.8 Gi, memory: 33.2 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-vfdkd1sa v1 with job batch system ID: 2893 and disk: 8.2 Gi, memory: 4.1 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-hmgn04vk v1 with job batch system ID: 2894 and disk: 24.8 Mi, memory: 12.4 Mi, cores: 64, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-0n5nwqz3 v1 with job batch system ID: 2895 and disk: 1.0 Gi, memory: 534.3 Mi, cores: 64, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-zcxp9bvj v1 with job batch system ID: 2896 and disk: 8.2 Gi, memory: 13.1 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-xjp2ao_7 v1 with job batch system ID: 2897 and disk: 18.0 Gi, memory: 9.0 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-el85stu_ v1 with job batch system ID: 2898 and disk: 21.6 Gi, memory: 10.8 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-5e__yssa v1 with job batch system ID: 2899 and disk: 11.6 Gi, memory: 18.5 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-iix29jvb v1 with job batch system ID: 2900 and disk: 7.8 Gi, memory: 12.5 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-pr6n94uh v1 with job batch system ID: 2901 and disk: 26.0 Gi, memory: 13.0 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-v_ad074u v1 with job batch system ID: 2902 and disk: 11.6 Gi, memory: 5.8 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-ow9fpdiz v1 with job batch system ID: 2903 and disk: 21.6 Gi, memory: 34.6 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-s_lnctvk v1 with job batch system ID: 2904 and disk: 36.8 Gi, memory: 58.9 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-yfthmw0p v1 with job batch system ID: 2905 and disk: 24.0 Gi, memory: 12.0 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-7l5cxdln v1 with job batch system ID: 2906 and disk: 3.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-ct79sxwo v1 with job batch system ID: 2907 and disk: 24.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-pdcall2s v1 with job batch system ID: 2908 and disk: 13.6 Gi, memory: 21.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-141ltov7 v1 with job batch system ID: 2909 and disk: 24.0 Gi, memory: 38.4 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-0qi3f029 v1 with job batch system ID: 2910 and disk: 30.5 Gi, memory: 15.3 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-cehlq8ai v1 with job batch system ID: 2911 and disk: 12.2 Gi, memory: 19.6 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-lny9wr9s v1 with job batch system ID: 2912 and disk: 26.2 Gi, memory: 42.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-jm0tk61n v1 with job batch system ID: 2913 and disk: 1.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-jqemgl3k v1 with job batch system ID: 2914 and disk: 13.6 Gi, memory: 6.8 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-9nmb8qro v1 with job batch system ID: 2915 and disk: 51.5 Gi, memory: 51.5 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-3_eoczrq v1 with job batch system ID: 2916 and disk: 29.5 Gi, memory: 29.5 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-8oh0kr08 v1 with job batch system ID: 2917 and disk: 15.7 Gi, memory: 15.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-m6q88y23 v1 with job batch system ID: 2918 and disk: 354.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-dqlghuwc v1 with job batch system ID: 2919 and disk: 48.0 Gi, memory: 48.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-80bxsje4 v1 with job batch system ID: 2920 and disk: 73.6 Gi, memory: 73.6 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-33t_e014 v1 with job batch system ID: 2921 and disk: 27.2 Gi, memory: 27.2 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-0d9ob0l1 v1 with job batch system ID: 2922 and disk: 52.1 Gi, memory: 52.1 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-4m4boa_3 v1 with job batch system ID: 2923 and disk: 24.5 Gi, memory: 24.5 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-j7buapf1 v1 with job batch system ID: 2924 and disk: 23.1 Gi, memory: 23.1 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-6740i8gk v1 with job batch system ID: 2925 and disk: 29.2 Gi, memory: 29.2 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-x6h4zb2g v1 with job batch system ID: 2926 and disk: 54.7 Gi, memory: 54.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-u4rkb7ts v1 with job batch system ID: 2927 and disk: 40.3 Gi, memory: 40.3 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-o6058k_i v1 with job batch system ID: 2928 and disk: 41.5 Gi, memory: 41.5 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-erejpaa6 v1 with job batch system ID: 2929 and disk: 43.3 Gi, memory: 43.3 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-6j8rb0mo v1 with job batch system ID: 2930 and disk: 49.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-46mlpcr2 v1 with job batch system ID: 2931 and disk: 61.1 Gi, memory: 61.1 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-jhefvwg2 v1 with job batch system ID: 2932 and disk: 2.1 Gi, memory: 2.1 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-hx4c7lci v1 with job batch system ID: 2933 and disk: 35.9 Gi, memory: 35.9 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-bb90j9qz v1 with job batch system ID: 2934 and disk: 58.4 Gi, memory: 58.4 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-cd7w0mz9 v1 with job batch system ID: 2935 and disk: 30.9 Gi, memory: 30.9 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-f2_vlamn v1 with job batch system ID: 2936 and disk: 6.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-zv6nknpe v1 with job batch system ID: 2937 and disk: 52.5 Gi, memory: 52.5 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-ekpf55m0 v1 with job batch system ID: 2938 and disk: 77.7 Gi, memory: 77.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-69_0hknk v1 with job batch system ID: 2939 and disk: 27.1 Gi, memory: 27.1 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-eb8_9aqd v1 with job batch system ID: 2940 and disk: 24.7 Gi, memory: 24.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'clip_vg' kind-clip_vg/instance-ev4o6hds v1 with job batch system ID: 2941 and disk: 16.4 Gi, memory: 16.4 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 17:11:59.184681: Running the command: "vg convert -f -Q GRCh38 chrOther.vg -B"
Job failed with exit value 253: 'make_odgi_viz' kind-make_odgi_viz/instance-xau7ncko v1
Exit reason: None
No log file is present, despite job failing: 'make_odgi_viz' kind-make_odgi_viz/instance-xau7ncko v1
2023-07-05 17:11:59.702706: Successfully ran: "vg convert -f -Q GRCh38 chrOther.vg -B" in 0.5169 seconds and 39.7 Mi memory with job-memory 2.0 Gi. Percent utilization: 1.937
Due to failure we are reducing the remaining try count of job 'make_odgi_viz' kind-make_odgi_viz/instance-xau7ncko v1 with ID kind-make_odgi_viz/instance-xau7ncko to 5
We have increased the default memory of the failed job 'make_odgi_viz' kind-make_odgi_viz/instance-xau7ncko v1 to 2147483648 bytes
We have increased the disk of the failed job 'make_odgi_viz' kind-make_odgi_viz/instance-xau7ncko v1 to the default of 2147483648 bytes
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-xau7ncko v2 with job batch system ID: 2942 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 64, accelerators: [], preemptible: False
Job failed with exit value 253: 'make_odgi_viz' kind-make_odgi_viz/instance-hmgn04vk v1
Exit reason: None
No log file is present, despite job failing: 'make_odgi_viz' kind-make_odgi_viz/instance-hmgn04vk v1
Due to failure we are reducing the remaining try count of job 'make_odgi_viz' kind-make_odgi_viz/instance-hmgn04vk v1 with ID kind-make_odgi_viz/instance-hmgn04vk to 5
We have increased the default memory of the failed job 'make_odgi_viz' kind-make_odgi_viz/instance-hmgn04vk v1 to 2147483648 bytes
We have increased the disk of the failed job 'make_odgi_viz' kind-make_odgi_viz/instance-hmgn04vk v1 to the default of 2147483648 bytes
Issued job 'make_odgi_viz' kind-make_odgi_viz/instance-hmgn04vk v2 with job batch system ID: 2943 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 64, accelerators: [], preemptible: False
2023-07-05 17:12:00.135407: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/0eb100b409605ef9a067a598d4d89da5/cb02/d5db/tmp2f69vjr0/chrM.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/cb02/d5db/tmp2f69vjr0/chrM.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:12:00.331060: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/0eb100b409605ef9a067a598d4d89da5/1acd/6127/tmp9xey2x_w/chrEBV.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/1acd/6127/tmp9xey2x_w/chrEBV.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:12:03.821545: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/0eb100b409605ef9a067a598d4d89da5/cb02/d5db/tmp2f69vjr0/chrM.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/cb02/d5db/tmp2f69vjr0/chrM.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 3.6852 seconds and 14.6 Mi memory with job-memory 2.0 Gi. Percent utilization: 0.7105
2023-07-05 17:12:03.821754: Running the command: "vg validate /data/tmp/0eb100b409605ef9a067a598d4d89da5/cb02/d5db/tmp2f69vjr0/chrM.vg.clip"
2023-07-05 17:12:03.872209: Successfully ran: "vg validate /data/tmp/0eb100b409605ef9a067a598d4d89da5/cb02/d5db/tmp2f69vjr0/chrM.vg.clip" in 0.0499 seconds and 15.2 Mi memory
2023-07-05 17:12:03.872438: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/0eb100b409605ef9a067a598d4d89da5/cb02/d5db/tmp2f69vjr0/chrM.vg.clip | awk '{print "chrM	" $0}'"
2023-07-05 17:12:03.916776: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/0eb100b409605ef9a067a598d4d89da5/cb02/d5db/tmp2f69vjr0/chrM.vg.clip | awk '"'"'{print "chrM	" $0}'"'"''" in 0.0439 seconds and 15.1 Mi memory
2023-07-05 17:12:03.916982: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/0eb100b409605ef9a067a598d4d89da5/cb02/d5db/tmp2f69vjr0/chrM.vg.clip | awk '{print "chrM	" $0}'"
2023-07-05 17:12:03.942628: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/0eb100b409605ef9a067a598d4d89da5/cb02/d5db/tmp2f69vjr0/chrM.vg.clip | awk '"'"'{print "chrM	" $0}'"'"''" in 0.0252 seconds and 15.0 Mi memory
2023-07-05 17:12:03.942799: Running the command: "awk {print $0 "	chrM"} /data/tmp/0eb100b409605ef9a067a598d4d89da5/cb02/d5db/tmp2f69vjr0/chrM.vg.clip.bed"
2023-07-05 17:12:03.945000: Successfully ran: "awk '{print $0 "	chrM"}' /data/tmp/0eb100b409605ef9a067a598d4d89da5/cb02/d5db/tmp2f69vjr0/chrM.vg.clip.bed" in 0.0018 seconds and 3.7 Mi memory
2023-07-05 17:12:04.110416: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/0eb100b409605ef9a067a598d4d89da5/1acd/6127/tmp9xey2x_w/chrEBV.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/1acd/6127/tmp9xey2x_w/chrEBV.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 3.7783 seconds and 21.2 Mi memory with job-memory 2.0 Gi. Percent utilization: 1.034
2023-07-05 17:12:04.110567: Running the command: "vg validate /data/tmp/0eb100b409605ef9a067a598d4d89da5/1acd/6127/tmp9xey2x_w/chrEBV.vg.clip"
2023-07-05 17:12:04.174701: Successfully ran: "vg validate /data/tmp/0eb100b409605ef9a067a598d4d89da5/1acd/6127/tmp9xey2x_w/chrEBV.vg.clip" in 0.0637 seconds and 18.4 Mi memory
2023-07-05 17:12:04.174900: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/0eb100b409605ef9a067a598d4d89da5/1acd/6127/tmp9xey2x_w/chrEBV.vg.clip | awk '{print "chrEBV	" $0}'"
2023-07-05 17:12:04.215838: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/0eb100b409605ef9a067a598d4d89da5/1acd/6127/tmp9xey2x_w/chrEBV.vg.clip | awk '"'"'{print "chrEBV	" $0}'"'"''" in 0.0405 seconds and 18.4 Mi memory
2023-07-05 17:12:04.216016: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/0eb100b409605ef9a067a598d4d89da5/1acd/6127/tmp9xey2x_w/chrEBV.vg.clip | awk '{print "chrEBV	" $0}'"
2023-07-05 17:12:04.242871: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/0eb100b409605ef9a067a598d4d89da5/1acd/6127/tmp9xey2x_w/chrEBV.vg.clip | awk '"'"'{print "chrEBV	" $0}'"'"''" in 0.0265 seconds and 18.3 Mi memory
2023-07-05 17:12:04.243050: Running the command: "awk {print $0 "	chrEBV"} /data/tmp/0eb100b409605ef9a067a598d4d89da5/1acd/6127/tmp9xey2x_w/chrEBV.vg.clip.bed"
2023-07-05 17:12:04.245307: Successfully ran: "awk '{print $0 "	chrEBV"}' /data/tmp/0eb100b409605ef9a067a598d4d89da5/1acd/6127/tmp9xey2x_w/chrEBV.vg.clip.bed" in 0.0019 seconds and 3.7 Mi memory
2023-07-05 17:12:05.286224: Running the command: "odgi sort -i /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/9a36/64f1/tmpg0jzpsbb/chrY.full.og -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/9a36/64f1/tmpg0jzpsbb/chrY.full.og.sort -t 64"
2023-07-05 17:12:06.467393: Running the command: "vg convert -f -Q GRCh38 chrEBV.vg -B"
2023-07-05 17:12:06.610437: Successfully ran: "vg convert -f -Q GRCh38 chrEBV.vg -B" in 0.1417 seconds and 19.4 Mi memory with job-memory 2.0 Gi. Percent utilization: 0.9474
2023-07-05 17:12:08.802920: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/0eb100b409605ef9a067a598d4d89da5/b00c/4aba/tmpnrsknhog/chrY.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/b00c/4aba/tmpnrsknhog/chrY.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:12:11.120428: Successfully ran: "odgi sort -i /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/9a36/64f1/tmpg0jzpsbb/chrY.full.og -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/9a36/64f1/tmpg0jzpsbb/chrY.full.og.sort -t 64" in 5.8331 seconds and 225.4 Mi memory with job-memory 534.3 Mi. Percent utilization: 42.18
2023-07-05 17:12:11.120632: Running the command: "odgi paths -i /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/9a36/64f1/tmpg0jzpsbb/chrY.full.og.sort -L"
2023-07-05 17:12:11.519560: Successfully ran: "odgi paths -i /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/9a36/64f1/tmpg0jzpsbb/chrY.full.og.sort -L" in 0.398 seconds and 215.9 Mi memory
2023-07-05 17:12:11.520721: Running the command: "odgi viz -i /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/9a36/64f1/tmpg0jzpsbb/chrY.full.og.sort -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/9a36/64f1/tmpg0jzpsbb/chrY.full.og.viz.png -M /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/9a36/64f1/tmpg0jzpsbb/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:12:12.475495: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/0eb100b409605ef9a067a598d4d89da5/b00c/4aba/tmpnrsknhog/chrY.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/b00c/4aba/tmpnrsknhog/chrY.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 3.6717 seconds and 145.7 Mi memory with job-memory 2.1 Gi. Percent utilization: 6.819
2023-07-05 17:12:12.475715: Running the command: "vg validate /data/tmp/0eb100b409605ef9a067a598d4d89da5/b00c/4aba/tmpnrsknhog/chrY.vg.clip"
2023-07-05 17:12:12.800580: Successfully ran: "vg validate /data/tmp/0eb100b409605ef9a067a598d4d89da5/b00c/4aba/tmpnrsknhog/chrY.vg.clip" in 0.3242 seconds and 125.2 Mi memory
2023-07-05 17:12:12.800859: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/0eb100b409605ef9a067a598d4d89da5/b00c/4aba/tmpnrsknhog/chrY.vg.clip | awk '{print "chrY	" $0}'"
2023-07-05 17:12:12.939304: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/0eb100b409605ef9a067a598d4d89da5/b00c/4aba/tmpnrsknhog/chrY.vg.clip | awk '"'"'{print "chrY	" $0}'"'"''" in 0.1379 seconds and 125.2 Mi memory
2023-07-05 17:12:12.939630: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/0eb100b409605ef9a067a598d4d89da5/b00c/4aba/tmpnrsknhog/chrY.vg.clip | awk '{print "chrY	" $0}'"
2023-07-05 17:12:13.007101: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/0eb100b409605ef9a067a598d4d89da5/b00c/4aba/tmpnrsknhog/chrY.vg.clip | awk '"'"'{print "chrY	" $0}'"'"''" in 0.0669 seconds and 125.2 Mi memory
2023-07-05 17:12:13.007341: Running the command: "awk {print $0 "	chrY"} /data/tmp/0eb100b409605ef9a067a598d4d89da5/b00c/4aba/tmpnrsknhog/chrY.vg.clip.bed"
2023-07-05 17:12:13.010079: Successfully ran: "awk '{print $0 "	chrY"}' /data/tmp/0eb100b409605ef9a067a598d4d89da5/b00c/4aba/tmpnrsknhog/chrY.vg.clip.bed" in 0.0023 seconds and 3.8 Mi memory
2023-07-05 17:12:15.500136: Successfully ran: "odgi viz -i /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/9a36/64f1/tmpg0jzpsbb/chrY.full.og.sort -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/9a36/64f1/tmpg0jzpsbb/chrY.full.og.viz.png -M /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/9a36/64f1/tmpg0jzpsbb/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 3.9783 seconds and 227.1 Mi memory with job-memory 534.3 Mi. Percent utilization: 42.51
2023-07-05 17:12:18.654835: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/7135/1f7f/tmpzh1r36cq/chrOther.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/7135/1f7f/tmpzh1r36cq/chrOther.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:12:20.130173: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/7135/1f7f/tmpzh1r36cq/chrOther.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/7135/1f7f/tmpzh1r36cq/chrOther.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 1.4738 seconds and 41.2 Mi memory with job-memory 2.0 Gi. Percent utilization: 2.011
2023-07-05 17:12:20.130495: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/7135/1f7f/tmpzh1r36cq/chrOther.vg.clip"
2023-07-05 17:12:20.276248: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/7135/1f7f/tmpzh1r36cq/chrOther.vg.clip" in 0.1448 seconds and 32.2 Mi memory
2023-07-05 17:12:20.276700: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/9eeeec3d467250f1999ba98b3759d207/7135/1f7f/tmpzh1r36cq/chrOther.vg.clip | awk '{print "chrOther	" $0}'"
2023-07-05 17:12:20.381888: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/9eeeec3d467250f1999ba98b3759d207/7135/1f7f/tmpzh1r36cq/chrOther.vg.clip | awk '"'"'{print "chrOther	" $0}'"'"''" in 0.1043 seconds and 32.2 Mi memory
2023-07-05 17:12:20.382184: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/9eeeec3d467250f1999ba98b3759d207/7135/1f7f/tmpzh1r36cq/chrOther.vg.clip | awk '{print "chrOther	" $0}'"
2023-07-05 17:12:20.447099: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/9eeeec3d467250f1999ba98b3759d207/7135/1f7f/tmpzh1r36cq/chrOther.vg.clip | awk '"'"'{print "chrOther	" $0}'"'"''" in 0.0642 seconds and 32.2 Mi memory
2023-07-05 17:12:20.447438: Running the command: "awk {print $0 "	chrOther"} /data/tmp/9eeeec3d467250f1999ba98b3759d207/7135/1f7f/tmpzh1r36cq/chrOther.vg.clip.bed"
2023-07-05 17:12:20.451189: Successfully ran: "awk '{print $0 "	chrOther"}' /data/tmp/9eeeec3d467250f1999ba98b3759d207/7135/1f7f/tmpzh1r36cq/chrOther.vg.clip.bed" in 0.0032 seconds and 3.7 Mi memory
2023-07-05 17:12:29.608139: Running the command: "odgi sort -i /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4b94/3270/tmpgxam08gz/chrX.full.og -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4b94/3270/tmpgxam08gz/chrX.full.og.sort -t 64"
2023-07-05 17:12:29.851471: Running the command: "odgi sort -i /data/tmp/27bafead6d355b998e86173ec3f6a1a4/0a72/2b28/tmp6sso25oi/chr21.full.og -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/0a72/2b28/tmp6sso25oi/chr21.full.og.sort -t 64"
2023-07-05 17:12:36.882699: Running the command: "odgi sort -i /data/tmp/27bafead6d355b998e86173ec3f6a1a4/bebe/9765/tmp1s2gjq76/chrEBV.full.og -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/bebe/9765/tmp1s2gjq76/chrEBV.full.og.sort -t 64"
2023-07-05 17:12:37.094148: Successfully ran: "odgi sort -i /data/tmp/27bafead6d355b998e86173ec3f6a1a4/bebe/9765/tmp1s2gjq76/chrEBV.full.og -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/bebe/9765/tmp1s2gjq76/chrEBV.full.og.sort -t 64" in 0.2101 seconds and 20.6 Mi memory with job-memory 2.0 Gi. Percent utilization: 1.005
2023-07-05 17:12:37.094405: Running the command: "odgi paths -i /data/tmp/27bafead6d355b998e86173ec3f6a1a4/bebe/9765/tmp1s2gjq76/chrEBV.full.og.sort -L"
2023-07-05 17:12:37.130817: Successfully ran: "odgi paths -i /data/tmp/27bafead6d355b998e86173ec3f6a1a4/bebe/9765/tmp1s2gjq76/chrEBV.full.og.sort -L" in 0.0357 seconds and 13.0 Mi memory
2023-07-05 17:12:37.131741: Running the command: "odgi viz -i /data/tmp/27bafead6d355b998e86173ec3f6a1a4/bebe/9765/tmp1s2gjq76/chrEBV.full.og.sort -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/bebe/9765/tmp1s2gjq76/chrEBV.full.og.viz.png -M /data/tmp/27bafead6d355b998e86173ec3f6a1a4/bebe/9765/tmp1s2gjq76/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:12:37.366116: Successfully ran: "odgi viz -i /data/tmp/27bafead6d355b998e86173ec3f6a1a4/bebe/9765/tmp1s2gjq76/chrEBV.full.og.sort -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/bebe/9765/tmp1s2gjq76/chrEBV.full.og.viz.png -M /data/tmp/27bafead6d355b998e86173ec3f6a1a4/bebe/9765/tmp1s2gjq76/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 0.2334 seconds and 18.8 Mi memory with job-memory 2.0 Gi. Percent utilization: 0.9201
2023-07-05 17:12:38.114913: Running the command: "odgi sort -i /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0936/5a47/tmpwld2pmjh/chrM.full.og -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0936/5a47/tmpwld2pmjh/chrM.full.og.sort -t 64"
2023-07-05 17:12:38.636874: Successfully ran: "odgi sort -i /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0936/5a47/tmpwld2pmjh/chrM.full.og -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0936/5a47/tmpwld2pmjh/chrM.full.og.sort -t 64" in 0.5207 seconds and 15.8 Mi memory with job-memory 2.0 Gi. Percent utilization: 0.7734
2023-07-05 17:12:38.637126: Running the command: "odgi paths -i /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0936/5a47/tmpwld2pmjh/chrM.full.og.sort -L"
2023-07-05 17:12:38.659961: Successfully ran: "odgi paths -i /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0936/5a47/tmpwld2pmjh/chrM.full.og.sort -L" in 0.0218 seconds and 9.2 Mi memory
2023-07-05 17:12:38.660814: Running the command: "odgi viz -i /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0936/5a47/tmpwld2pmjh/chrM.full.og.sort -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0936/5a47/tmpwld2pmjh/chrM.full.og.viz.png -M /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0936/5a47/tmpwld2pmjh/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:12:38.844201: Successfully ran: "odgi viz -i /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0936/5a47/tmpwld2pmjh/chrM.full.og.sort -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0936/5a47/tmpwld2pmjh/chrM.full.og.viz.png -M /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0936/5a47/tmpwld2pmjh/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 0.1824 seconds and 19.2 Mi memory with job-memory 2.0 Gi. Percent utilization: 0.9378
2023-07-05 17:12:38.868667: Running the command: "odgi sort -i /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/7471/44df/tmp02c6e9zd/chr16.full.og -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/7471/44df/tmp02c6e9zd/chr16.full.og.sort -t 64"
2023-07-05 17:12:39.195338: Running the command: "odgi sort -i /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4843/728d/tmpvt1cxy55/chr3.full.og -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4843/728d/tmpvt1cxy55/chr3.full.og.sort -t 64"
2023-07-05 17:12:41.452990: Running the command: "odgi sort -i /data/tmp/fb6bb230be1f50648d9c685404953bb7/5aed/dc34/tmpkg67didn/chr19.full.og -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/5aed/dc34/tmpkg67didn/chr19.full.og.sort -t 64"
2023-07-05 17:12:41.892715: Running the command: "odgi sort -i /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4629/d10c/tmpr1gpgxme/chr15.full.og -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4629/d10c/tmpr1gpgxme/chr15.full.og.sort -t 64"
2023-07-05 17:12:43.841600: Running the command: "odgi sort -i /data/tmp/9d87903a2d55576d88b97df41ad796d4/387c/a6c8/tmpbmcvrgp5/chr17.full.og -o /data/tmp/9d87903a2d55576d88b97df41ad796d4/387c/a6c8/tmpbmcvrgp5/chr17.full.og.sort -t 64"
2023-07-05 17:12:51.831334: Running the command: "odgi sort -i /data/tmp/fb6bb230be1f50648d9c685404953bb7/cb16/0de5/tmpxtqo78e_/chr5.full.og -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/cb16/0de5/tmpxtqo78e_/chr5.full.og.sort -t 64"
2023-07-05 17:13:00.328551: Running the command: "odgi sort -i /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5aa9/3361/tmp7yd4get_/chr18.full.og -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5aa9/3361/tmp7yd4get_/chr18.full.og.sort -t 64"
2023-07-05 17:13:02.675397: Running the command: "odgi sort -i /data/tmp/0a9f88a4b0315a71bc09997943db6609/5449/1649/tmp4eoipvg9/chr14.full.og -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/5449/1649/tmp4eoipvg9/chr14.full.og.sort -t 64"
2023-07-05 17:13:07.783369: Running the command: "odgi sort -i /data/tmp/9fd0f61929a456269b41669e7d9612f5/732f/3ec7/tmpjs9xnuk5/chr13.full.og -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/732f/3ec7/tmpjs9xnuk5/chr13.full.og.sort -t 64"
2023-07-05 17:13:13.269246: Running the command: "odgi sort -i /data/tmp/9fd0f61929a456269b41669e7d9612f5/bf45/ddbe/tmp672b_g7j/chr11.full.og -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/bf45/ddbe/tmp672b_g7j/chr11.full.og.sort -t 64"
2023-07-05 17:13:13.885326: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e50e/ee17/tmpu0wq0vfd/chr21.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e50e/ee17/tmpu0wq0vfd/chr21.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:13:18.315833: Running the command: "odgi sort -i /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fc1e/e2f9/tmp99fj8c__/chr2.full.og -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fc1e/e2f9/tmp99fj8c__/chr2.full.og.sort -t 64"
2023-07-05 17:13:18.398989: Successfully ran: "odgi sort -i /data/tmp/27bafead6d355b998e86173ec3f6a1a4/0a72/2b28/tmp6sso25oi/chr21.full.og -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/0a72/2b28/tmp6sso25oi/chr21.full.og.sort -t 64" in 48.5457 seconds and 1.3 Gi memory with job-memory 4.1 Gi. Percent utilization: 32.38
2023-07-05 17:13:18.399218: Running the command: "odgi paths -i /data/tmp/27bafead6d355b998e86173ec3f6a1a4/0a72/2b28/tmp6sso25oi/chr21.full.og.sort -L"
2023-07-05 17:13:21.244095: Successfully ran: "odgi paths -i /data/tmp/27bafead6d355b998e86173ec3f6a1a4/0a72/2b28/tmp6sso25oi/chr21.full.og.sort -L" in 2.8439 seconds and 1.3 Gi memory
2023-07-05 17:13:21.247349: Running the command: "odgi viz -i /data/tmp/27bafead6d355b998e86173ec3f6a1a4/0a72/2b28/tmp6sso25oi/chr21.full.og.sort -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/0a72/2b28/tmp6sso25oi/chr21.full.og.viz.png -M /data/tmp/27bafead6d355b998e86173ec3f6a1a4/0a72/2b28/tmp6sso25oi/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:13:22.558346: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/0eb100b409605ef9a067a598d4d89da5/3911/5283/tmpq9ll0nla/chr20.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/3911/5283/tmpq9ll0nla/chr20.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:13:26.245720: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/0eb100b409605ef9a067a598d4d89da5/6923/0056/tmpujrwp311/chr18.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/6923/0056/tmpujrwp311/chr18.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:13:26.666697: Running the command: "odgi sort -i /data/tmp/2a95a9ee729755068515bad92da082de/918b/bc00/tmpur4_i41u/chr12.full.og -o /data/tmp/2a95a9ee729755068515bad92da082de/918b/bc00/tmpur4_i41u/chr12.full.og.sort -t 64"
2023-07-05 17:13:28.031559: Running the command: "odgi sort -i /data/tmp/0a9f88a4b0315a71bc09997943db6609/e3f4/46b2/tmph4_pqise/chr1.full.og -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/e3f4/46b2/tmph4_pqise/chr1.full.og.sort -t 64"
2023-07-05 17:13:31.426516: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/0eb100b409605ef9a067a598d4d89da5/86d5/ac12/tmpoet_87_4/chr15.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/86d5/ac12/tmpoet_87_4/chr15.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:13:34.040226: Running the command: "odgi sort -i /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/b830/962c/tmprz5ays70/chr10.full.og -o /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/b830/962c/tmprz5ays70/chr10.full.og.sort -t 64"
2023-07-05 17:13:34.130741: Running the command: "odgi sort -i /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9696/7db6/tmpmt94zr8r/chr9.full.og -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9696/7db6/tmpmt94zr8r/chr9.full.og.sort -t 64"
2023-07-05 17:13:35.880090: Running the command: "odgi sort -i /data/tmp/2a95a9ee729755068515bad92da082de/5147/0bb7/tmp7ri72mk7/chr7.full.og -o /data/tmp/2a95a9ee729755068515bad92da082de/5147/0bb7/tmp7ri72mk7/chr7.full.og.sort -t 64"
2023-07-05 17:13:36.061207: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/0eb100b409605ef9a067a598d4d89da5/59a1/d0cc/tmp_h1i2i5c/chrX.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/59a1/d0cc/tmp_h1i2i5c/chrX.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:13:36.486830: Running the command: "odgi sort -i /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/6724/3b1f/tmpniyejza3/chr6.full.og -o /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/6724/3b1f/tmpniyejza3/chr6.full.og.sort -t 64"
2023-07-05 17:13:38.081688: Running the command: "vg convert -f -Q GRCh38 chrM.vg -B"
2023-07-05 17:13:38.137569: Successfully ran: "vg convert -f -Q GRCh38 chrM.vg -B" in 0.0547 seconds and 15.7 Mi memory with job-memory 2.0 Gi. Percent utilization: 0.7648
2023-07-05 17:13:39.862394: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7c5e/2695/tmpho9b8fu2/chr19.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7c5e/2695/tmpho9b8fu2/chr19.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:13:44.396987: Running the command: "odgi sort -i /data/tmp/ce3493d5ef82593a9a47d6e926043a80/fba3/b8c2/tmp6bjoy8_u/chr20.full.og -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/fba3/b8c2/tmp6bjoy8_u/chr20.full.og.sort -t 64"
2023-07-05 17:13:47.465556: Running the command: "vg convert -f -Q GRCh38 chrY.vg -B"
2023-07-05 17:13:49.581794: Successfully ran: "vg convert -f -Q GRCh38 chrY.vg -B" in 2.1148 seconds and 201.0 Mi memory with job-memory 2.0 Gi. Percent utilization: 9.815
2023-07-05 17:13:51.998461: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/ce3493d5ef82593a9a47d6e926043a80/2ff5/fd2b/tmp6ai2ylqf/chr13.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/2ff5/fd2b/tmp6ai2ylqf/chr13.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:13:55.008711: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/ce3493d5ef82593a9a47d6e926043a80/56fd/d031/tmpgsjwhz57/chr17.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/56fd/d031/tmpgsjwhz57/chr17.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:13:55.888172: Running the command: "vg convert -f -Q GRCh38 chr21.vg -B"
2023-07-05 17:13:58.912414: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/0eb100b409605ef9a067a598d4d89da5/4815/e338/tmp7xqky83b/chr8.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/4815/e338/tmp7xqky83b/chr8.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:13:59.416567: Running the command: "odgi sort -i /data/tmp/0eb100b409605ef9a067a598d4d89da5/01dd/17e3/tmphrjqnoxx/chr8.full.og -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/01dd/17e3/tmphrjqnoxx/chr8.full.og.sort -t 64"
2023-07-05 17:14:00.529879: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7e85/3b2c/tmpkpert6k4/chr16.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7e85/3b2c/tmpkpert6k4/chr16.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:14:00.695896: Running the command: "odgi sort -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/2540/9542/tmpidiuzhhk/chr22.full.og -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/2540/9542/tmpidiuzhhk/chr22.full.og.sort -t 64"
2023-07-05 17:14:01.904049: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/0eb100b409605ef9a067a598d4d89da5/9b9d/8d92/tmphygtsr1l/chr6.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/9b9d/8d92/tmphygtsr1l/chr6.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:14:02.590394: Successfully ran: "odgi sort -i /data/tmp/fb6bb230be1f50648d9c685404953bb7/5aed/dc34/tmpkg67didn/chr19.full.og -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/5aed/dc34/tmpkg67didn/chr19.full.og.sort -t 64" in 81.1361 seconds and 2.0 Gi memory with job-memory 6.2 Gi. Percent utilization: 32.86
2023-07-05 17:14:02.590679: Running the command: "odgi paths -i /data/tmp/fb6bb230be1f50648d9c685404953bb7/5aed/dc34/tmpkg67didn/chr19.full.og.sort -L"
2023-07-05 17:14:03.444474: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/0eb100b409605ef9a067a598d4d89da5/27ce/cc1d/tmp52_p_x7x/chr5.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/27ce/cc1d/tmp52_p_x7x/chr5.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:14:05.886531: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/ce3493d5ef82593a9a47d6e926043a80/4865/68ba/tmpjos_6xf5/chr12.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/4865/68ba/tmpjos_6xf5/chr12.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:14:06.080886: Running the command: "odgi sort -i /data/tmp/0eb100b409605ef9a067a598d4d89da5/efbb/a71c/tmp6551wvw8/chr4.full.og -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/efbb/a71c/tmp6551wvw8/chr4.full.og.sort -t 64"
2023-07-05 17:14:06.671933: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/ce3493d5ef82593a9a47d6e926043a80/c10c/b22b/tmpoqn8f_c_/chr11.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/c10c/b22b/tmpoqn8f_c_/chr11.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:14:07.072238: Successfully ran: "odgi paths -i /data/tmp/fb6bb230be1f50648d9c685404953bb7/5aed/dc34/tmpkg67didn/chr19.full.og.sort -L" in 4.4804 seconds and 1.9 Gi memory
2023-07-05 17:14:07.075224: Running the command: "odgi viz -i /data/tmp/fb6bb230be1f50648d9c685404953bb7/5aed/dc34/tmpkg67didn/chr19.full.og.sort -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/5aed/dc34/tmpkg67didn/chr19.full.og.viz.png -M /data/tmp/fb6bb230be1f50648d9c685404953bb7/5aed/dc34/tmpkg67didn/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:14:07.248182: Running the command: "vg convert -f -Q GRCh38 chr22.vg -B"
2023-07-05 17:14:07.250205: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/f12b/669a/tmp78feyfkw/chr22.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/f12b/669a/tmp78feyfkw/chr22.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:14:08.482484: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/0eb100b409605ef9a067a598d4d89da5/4236/e108/tmpe8d6a749/chr2.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/4236/e108/tmpe8d6a749/chr2.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:14:11.173247: Successfully ran: "odgi sort -i /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4629/d10c/tmpr1gpgxme/chr15.full.og -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4629/d10c/tmpr1gpgxme/chr15.full.og.sort -t 64" in 89.279 seconds and 2.0 Gi memory with job-memory 6.8 Gi. Percent utilization: 28.72
2023-07-05 17:14:11.173503: Running the command: "odgi paths -i /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4629/d10c/tmpr1gpgxme/chr15.full.og.sort -L"
2023-07-05 17:14:11.581997: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e45b/bc54/tmpbbu7rf_j/chr10.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e45b/bc54/tmpbbu7rf_j/chr10.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:14:12.830309: Successfully ran: "odgi viz -i /data/tmp/27bafead6d355b998e86173ec3f6a1a4/0a72/2b28/tmp6sso25oi/chr21.full.og.sort -o /data/tmp/27bafead6d355b998e86173ec3f6a1a4/0a72/2b28/tmp6sso25oi/chr21.full.og.viz.png -M /data/tmp/27bafead6d355b998e86173ec3f6a1a4/0a72/2b28/tmp6sso25oi/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 51.5817 seconds and 1.3 Gi memory with job-memory 4.1 Gi. Percent utilization: 31.52
2023-07-05 17:14:15.051106: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/ce3493d5ef82593a9a47d6e926043a80/1c94/eac3/tmpweivl4j0/chr7.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/1c94/eac3/tmpweivl4j0/chr7.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:14:15.208146: Successfully ran: "odgi sort -i /data/tmp/9d87903a2d55576d88b97df41ad796d4/387c/a6c8/tmpbmcvrgp5/chr17.full.og -o /data/tmp/9d87903a2d55576d88b97df41ad796d4/387c/a6c8/tmpbmcvrgp5/chr17.full.og.sort -t 64" in 91.3647 seconds and 2.1 Gi memory with job-memory 6.8 Gi. Percent utilization: 31.42
2023-07-05 17:14:15.208486: Running the command: "odgi paths -i /data/tmp/9d87903a2d55576d88b97df41ad796d4/387c/a6c8/tmpbmcvrgp5/chr17.full.og.sort -L"
2023-07-05 17:14:15.662372: Successfully ran: "vg convert -f -Q GRCh38 chr21.vg -B" in 19.7727 seconds and 1.1 Gi memory with job-memory 13.1 Gi. Percent utilization: 8.563
2023-07-05 17:14:15.921180: Successfully ran: "odgi paths -i /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4629/d10c/tmpr1gpgxme/chr15.full.og.sort -L" in 4.7468 seconds and 1.8 Gi memory
2023-07-05 17:14:15.922993: Running the command: "odgi viz -i /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4629/d10c/tmpr1gpgxme/chr15.full.og.sort -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4629/d10c/tmpr1gpgxme/chr15.full.og.viz.png -M /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4629/d10c/tmpr1gpgxme/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:14:17.086438: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/ce3493d5ef82593a9a47d6e926043a80/8309/d0d0/tmpdv2r4wmh/chr3.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/8309/d0d0/tmpdv2r4wmh/chr3.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:14:17.819061: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/ce3493d5ef82593a9a47d6e926043a80/dd2e/437a/tmp6idy6wj1/chr4.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/dd2e/437a/tmp6idy6wj1/chr4.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:14:20.122728: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/ce3493d5ef82593a9a47d6e926043a80/ed66/e78e/tmpep8m1cda/chr1.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/ed66/e78e/tmpep8m1cda/chr1.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:14:20.158343: Successfully ran: "odgi paths -i /data/tmp/9d87903a2d55576d88b97df41ad796d4/387c/a6c8/tmpbmcvrgp5/chr17.full.og.sort -L" in 4.9486 seconds and 2.0 Gi memory
2023-07-05 17:14:20.160923: Running the command: "odgi viz -i /data/tmp/9d87903a2d55576d88b97df41ad796d4/387c/a6c8/tmpbmcvrgp5/chr17.full.og.sort -o /data/tmp/9d87903a2d55576d88b97df41ad796d4/387c/a6c8/tmpbmcvrgp5/chr17.full.og.viz.png -M /data/tmp/9d87903a2d55576d88b97df41ad796d4/387c/a6c8/tmpbmcvrgp5/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:14:21.036132: Running the command: "vg convert -f -Q GRCh38 chr19.vg -B"
2023-07-05 17:14:21.052444: Running the command: "vg convert -f -Q GRCh38 chr20.vg -B"
2023-07-05 17:14:24.202526: Running the command: "vg convert -f -Q GRCh38 chr17.vg -B"
2023-07-05 17:14:24.455648: Successfully ran: "odgi sort -i /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5aa9/3361/tmp7yd4get_/chr18.full.og -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5aa9/3361/tmp7yd4get_/chr18.full.og.sort -t 64" in 84.1255 seconds and 2.0 Gi memory with job-memory 6.1 Gi. Percent utilization: 32.23
2023-07-05 17:14:24.455859: Running the command: "odgi paths -i /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5aa9/3361/tmp7yd4get_/chr18.full.og.sort -L"
2023-07-05 17:14:25.332430: Running the command: "vg convert -f -Q GRCh38 chr18.vg -B"
2023-07-05 17:14:25.496137: Successfully ran: "odgi sort -i /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/7471/44df/tmp02c6e9zd/chr16.full.og -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/7471/44df/tmp02c6e9zd/chr16.full.og.sort -t 64" in 106.6258 seconds and 3.0 Gi memory with job-memory 9.0 Gi. Percent utilization: 33.29
2023-07-05 17:14:25.496345: Running the command: "odgi paths -i /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/7471/44df/tmp02c6e9zd/chr16.full.og.sort -L"
2023-07-05 17:14:26.029520: Successfully ran: "vg convert -f -Q GRCh38 chr22.vg -B" in 18.7799 seconds and 1.1 Gi memory with job-memory 12.5 Gi. Percent utilization: 8.927
2023-07-05 17:14:26.398932: Running the command: "vg convert -f -Q GRCh38 chr15.vg -B"
2023-07-05 17:14:27.931615: Running the command: "vg convert -f -Q GRCh38 chrX.vg -B"
2023-07-05 17:14:28.932836: Successfully ran: "odgi sort -i /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4b94/3270/tmpgxam08gz/chrX.full.og -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4b94/3270/tmpgxam08gz/chrX.full.og.sort -t 64" in 119.3234 seconds and 2.7 Gi memory with job-memory 7.3 Gi. Percent utilization: 36.68
2023-07-05 17:14:28.933018: Running the command: "odgi paths -i /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4b94/3270/tmpgxam08gz/chrX.full.og.sort -L"
2023-07-05 17:14:29.016492: Successfully ran: "odgi paths -i /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5aa9/3361/tmp7yd4get_/chr18.full.og.sort -L" in 4.5594 seconds and 1.9 Gi memory
2023-07-05 17:14:29.018613: Running the command: "odgi viz -i /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5aa9/3361/tmp7yd4get_/chr18.full.og.sort -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5aa9/3361/tmp7yd4get_/chr18.full.og.viz.png -M /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5aa9/3361/tmp7yd4get_/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:14:30.000899: Running the command: "vg convert -f -Q GRCh38 chr13.vg -B"
2023-07-05 17:14:31.565499: Successfully ran: "odgi paths -i /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/7471/44df/tmp02c6e9zd/chr16.full.og.sort -L" in 6.0682 seconds and 2.9 Gi memory
2023-07-05 17:14:31.569658: Running the command: "odgi viz -i /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/7471/44df/tmp02c6e9zd/chr16.full.og.sort -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/7471/44df/tmp02c6e9zd/chr16.full.og.viz.png -M /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/7471/44df/tmp02c6e9zd/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:14:34.387373: Running the command: "vg convert -f -Q GRCh38 chr16.vg -B"
2023-07-05 17:14:35.578130: Successfully ran: "odgi paths -i /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4b94/3270/tmpgxam08gz/chrX.full.og.sort -L" in 6.6443 seconds and 2.5 Gi memory
2023-07-05 17:14:35.584184: Running the command: "odgi viz -i /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4b94/3270/tmpgxam08gz/chrX.full.og.sort -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4b94/3270/tmpgxam08gz/chrX.full.og.viz.png -M /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4b94/3270/tmpgxam08gz/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:14:36.635101: Successfully ran: "odgi sort -i /data/tmp/0a9f88a4b0315a71bc09997943db6609/5449/1649/tmp4eoipvg9/chr14.full.og -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/5449/1649/tmp4eoipvg9/chr14.full.og.sort -t 64" in 93.9584 seconds and 2.1 Gi memory with job-memory 7.4 Gi. Percent utilization: 28.53
2023-07-05 17:14:36.635319: Running the command: "odgi paths -i /data/tmp/0a9f88a4b0315a71bc09997943db6609/5449/1649/tmp4eoipvg9/chr14.full.og.sort -L"
2023-07-05 17:14:37.637388: Running the command: "vg convert -f -Q GRCh38 chr12.vg -B"
2023-07-05 17:14:39.290622: Running the command: "vg convert -f -Q GRCh38 chr11.vg -B"
2023-07-05 17:14:40.661849: Running the command: "vg convert -f -Q GRCh38 chr10.vg -B"
2023-07-05 17:14:41.754670: Successfully ran: "odgi paths -i /data/tmp/0a9f88a4b0315a71bc09997943db6609/5449/1649/tmp4eoipvg9/chr14.full.og.sort -L" in 5.1185 seconds and 2.0 Gi memory
2023-07-05 17:14:41.756613: Running the command: "odgi viz -i /data/tmp/0a9f88a4b0315a71bc09997943db6609/5449/1649/tmp4eoipvg9/chr14.full.og.sort -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/5449/1649/tmp4eoipvg9/chr14.full.og.viz.png -M /data/tmp/0a9f88a4b0315a71bc09997943db6609/5449/1649/tmp4eoipvg9/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:14:42.724953: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/a808/a917/tmp3rbcjuou/chr14.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/a808/a917/tmp3rbcjuou/chr14.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:14:42.725276: Running the command: "vg convert -f -Q GRCh38 chr14.vg -B"
2023-07-05 17:14:45.254940: Successfully ran: "odgi sort -i /data/tmp/9fd0f61929a456269b41669e7d9612f5/732f/3ec7/tmpjs9xnuk5/chr13.full.og -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/732f/3ec7/tmpjs9xnuk5/chr13.full.og.sort -t 64" in 97.4699 seconds and 2.4 Gi memory with job-memory 7.7 Gi. Percent utilization: 31.31
2023-07-05 17:14:45.255162: Running the command: "odgi paths -i /data/tmp/9fd0f61929a456269b41669e7d9612f5/732f/3ec7/tmpjs9xnuk5/chr13.full.og.sort -L"
2023-07-05 17:14:46.065046: Running the command: "vg convert -f -Q GRCh38 chr8.vg -B"
2023-07-05 17:14:47.144827: Running the command: "vg convert -f -Q GRCh38 chr6.vg -B"
2023-07-05 17:14:47.252109: Successfully ran: "odgi sort -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/2540/9542/tmpidiuzhhk/chr22.full.og -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/2540/9542/tmpidiuzhhk/chr22.full.og.sort -t 64" in 46.5542 seconds and 1.2 Gi memory with job-memory 3.9 Gi. Percent utilization: 31.16
2023-07-05 17:14:47.252363: Running the command: "odgi paths -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/2540/9542/tmpidiuzhhk/chr22.full.og.sort -L"
2023-07-05 17:14:48.549031: Running the command: "vg convert -f -Q GRCh38 chr5.vg -B"
2023-07-05 17:14:49.557772: Running the command: "vg convert -f -Q GRCh38 chr3.vg -B"
2023-07-05 17:14:50.214420: Successfully ran: "vg convert -f -Q GRCh38 chr20.vg -B" in 29.1596 seconds and 1.5 Gi memory with job-memory 18.5 Gi. Percent utilization: 8.208
2023-07-05 17:14:50.438333: Successfully ran: "odgi paths -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/2540/9542/tmpidiuzhhk/chr22.full.og.sort -L" in 3.185 seconds and 1.2 Gi memory
2023-07-05 17:14:50.439593: Running the command: "odgi viz -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/2540/9542/tmpidiuzhhk/chr22.full.og.sort -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/2540/9542/tmpidiuzhhk/chr22.full.og.viz.png -M /data/tmp/9eeeec3d467250f1999ba98b3759d207/2540/9542/tmpidiuzhhk/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:14:50.488247: Running the command: "vg convert -f -Q GRCh38 chr4.vg -B"
2023-07-05 17:14:50.761213: Successfully ran: "odgi paths -i /data/tmp/9fd0f61929a456269b41669e7d9612f5/732f/3ec7/tmpjs9xnuk5/chr13.full.og.sort -L" in 5.505 seconds and 2.3 Gi memory
2023-07-05 17:14:50.763489: Running the command: "odgi viz -i /data/tmp/9fd0f61929a456269b41669e7d9612f5/732f/3ec7/tmpjs9xnuk5/chr13.full.og.sort -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/732f/3ec7/tmpjs9xnuk5/chr13.full.og.viz.png -M /data/tmp/9fd0f61929a456269b41669e7d9612f5/732f/3ec7/tmpjs9xnuk5/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:14:53.472033: Successfully ran: "vg convert -f -Q GRCh38 chr19.vg -B" in 32.4342 seconds and 1.6 Gi memory with job-memory 19.7 Gi. Percent utilization: 8.351
2023-07-05 17:14:53.670192: Running the command: "vg convert -f -Q GRCh38 chr7.vg -B"
2023-07-05 17:14:56.507378: Running the command: "vg convert -f -Q GRCh38 chr1.vg -B"
2023-07-05 17:14:57.077355: Successfully ran: "vg convert -f -Q GRCh38 chr18.vg -B" in 31.7435 seconds and 1.6 Gi memory with job-memory 19.6 Gi. Percent utilization: 8.403
2023-07-05 17:14:57.134531: Running the command: "vg convert -f -Q GRCh38 chr2.vg -B"
2023-07-05 17:14:57.471705: Running the command: "bash -c set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/1adc/5535/tmpz0p31nt1/chr9.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/1adc/5535/tmpz0p31nt1/chr9.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38"
2023-07-05 17:14:57.471812: Running the command: "vg convert -f -Q GRCh38 chr9.vg -B"
2023-07-05 17:14:59.326141: Successfully ran: "vg convert -f -Q GRCh38 chr17.vg -B" in 35.1221 seconds and 1.8 Gi memory with job-memory 21.7 Gi. Percent utilization: 8.273
2023-07-05 17:14:59.486635: Successfully ran: "vg convert -f -Q GRCh38 chr15.vg -B" in 33.0865 seconds and 1.8 Gi memory with job-memory 21.7 Gi. Percent utilization: 8.436
2023-07-05 17:15:01.028940: Successfully ran: "odgi sort -i /data/tmp/ce3493d5ef82593a9a47d6e926043a80/fba3/b8c2/tmp6bjoy8_u/chr20.full.og -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/fba3/b8c2/tmp6bjoy8_u/chr20.full.og.sort -t 64" in 76.6302 seconds and 1.9 Gi memory with job-memory 5.8 Gi. Percent utilization: 32.79
2023-07-05 17:15:01.029242: Running the command: "odgi paths -i /data/tmp/ce3493d5ef82593a9a47d6e926043a80/fba3/b8c2/tmp6bjoy8_u/chr20.full.og.sort -L"
2023-07-05 17:15:05.342177: Successfully ran: "odgi paths -i /data/tmp/ce3493d5ef82593a9a47d6e926043a80/fba3/b8c2/tmp6bjoy8_u/chr20.full.og.sort -L" in 4.3119 seconds and 1.8 Gi memory
2023-07-05 17:15:05.344321: Running the command: "odgi viz -i /data/tmp/ce3493d5ef82593a9a47d6e926043a80/fba3/b8c2/tmp6bjoy8_u/chr20.full.og.sort -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/fba3/b8c2/tmp6bjoy8_u/chr20.full.og.viz.png -M /data/tmp/ce3493d5ef82593a9a47d6e926043a80/fba3/b8c2/tmp6bjoy8_u/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:15:12.134616: Successfully ran: "vg convert -f -Q GRCh38 chrX.vg -B" in 44.2017 seconds and 2.1 Gi memory with job-memory 23.4 Gi. Percent utilization: 8.853
2023-07-05 17:15:15.066316: Successfully ran: "vg convert -f -Q GRCh38 chr13.vg -B" in 45.0642 seconds and 2.1 Gi memory with job-memory 24.7 Gi. Percent utilization: 8.653
2023-07-05 17:15:24.122786: Successfully ran: "odgi viz -i /data/tmp/fb6bb230be1f50648d9c685404953bb7/5aed/dc34/tmpkg67didn/chr19.full.og.sort -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/5aed/dc34/tmpkg67didn/chr19.full.og.viz.png -M /data/tmp/fb6bb230be1f50648d9c685404953bb7/5aed/dc34/tmpkg67didn/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 77.0464 seconds and 2.0 Gi memory with job-memory 6.2 Gi. Percent utilization: 31.76
2023-07-05 17:15:24.664955: Successfully ran: "vg convert -f -Q GRCh38 chr14.vg -B" in 41.9382 seconds and 2.1 Gi memory with job-memory 23.6 Gi. Percent utilization: 8.701
2023-07-05 17:15:25.930374: Successfully ran: "vg convert -f -Q GRCh38 chr16.vg -B" in 51.5417 seconds and 2.4 Gi memory with job-memory 28.7 Gi. Percent utilization: 8.357
2023-07-05 17:15:30.794501: Successfully ran: "odgi sort -i /data/tmp/9fd0f61929a456269b41669e7d9612f5/bf45/ddbe/tmp672b_g7j/chr11.full.og -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/bf45/ddbe/tmp672b_g7j/chr11.full.og.sort -t 64" in 137.5235 seconds and 3.1 Gi memory with job-memory 10.4 Gi. Percent utilization: 30.09
2023-07-05 17:15:30.794808: Running the command: "odgi paths -i /data/tmp/9fd0f61929a456269b41669e7d9612f5/bf45/ddbe/tmp672b_g7j/chr11.full.og.sort -L"
2023-07-05 17:15:34.136441: Successfully ran: "vg convert -f -Q GRCh38 chr12.vg -B" in 56.4978 seconds and 2.7 Gi memory with job-memory 32.2 Gi. Percent utilization: 8.302
2023-07-05 17:15:36.231289: Successfully ran: "odgi sort -i /data/tmp/2a95a9ee729755068515bad92da082de/918b/bc00/tmpur4_i41u/chr12.full.og -o /data/tmp/2a95a9ee729755068515bad92da082de/918b/bc00/tmpur4_i41u/chr12.full.og.sort -t 64" in 129.5632 seconds and 3.0 Gi memory with job-memory 10.1 Gi. Percent utilization: 29.6
2023-07-05 17:15:36.231476: Running the command: "odgi paths -i /data/tmp/2a95a9ee729755068515bad92da082de/918b/bc00/tmpur4_i41u/chr12.full.og.sort -L"
2023-07-05 17:15:36.802005: Successfully ran: "vg convert -f -Q GRCh38 chr11.vg -B" in 57.5098 seconds and 2.8 Gi memory with job-memory 33.2 Gi. Percent utilization: 8.293
2023-07-05 17:15:38.089850: Successfully ran: "vg convert -f -Q GRCh38 chr10.vg -B" in 57.4268 seconds and 2.9 Gi memory with job-memory 34.6 Gi. Percent utilization: 8.292
2023-07-05 17:15:38.279689: Successfully ran: "odgi paths -i /data/tmp/9fd0f61929a456269b41669e7d9612f5/bf45/ddbe/tmp672b_g7j/chr11.full.og.sort -L" in 7.4838 seconds and 3.0 Gi memory
2023-07-05 17:15:38.281961: Running the command: "odgi viz -i /data/tmp/9fd0f61929a456269b41669e7d9612f5/bf45/ddbe/tmp672b_g7j/chr11.full.og.sort -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/bf45/ddbe/tmp672b_g7j/chr11.full.og.viz.png -M /data/tmp/9fd0f61929a456269b41669e7d9612f5/bf45/ddbe/tmp672b_g7j/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:15:39.622556: Successfully ran: "odgi viz -i /data/tmp/9eeeec3d467250f1999ba98b3759d207/2540/9542/tmpidiuzhhk/chr22.full.og.sort -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/2540/9542/tmpidiuzhhk/chr22.full.og.viz.png -M /data/tmp/9eeeec3d467250f1999ba98b3759d207/2540/9542/tmpidiuzhhk/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 49.1819 seconds and 1.2 Gi memory with job-memory 3.9 Gi. Percent utilization: 30.29
2023-07-05 17:15:43.626509: Successfully ran: "odgi paths -i /data/tmp/2a95a9ee729755068515bad92da082de/918b/bc00/tmpur4_i41u/chr12.full.og.sort -L" in 7.3943 seconds and 2.8 Gi memory
2023-07-05 17:15:43.628848: Running the command: "odgi viz -i /data/tmp/2a95a9ee729755068515bad92da082de/918b/bc00/tmpur4_i41u/chr12.full.og.sort -o /data/tmp/2a95a9ee729755068515bad92da082de/918b/bc00/tmpur4_i41u/chr12.full.og.viz.png -M /data/tmp/2a95a9ee729755068515bad92da082de/918b/bc00/tmpur4_i41u/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:15:48.995079: Successfully ran: "odgi viz -i /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4629/d10c/tmpr1gpgxme/chr15.full.og.sort -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4629/d10c/tmpr1gpgxme/chr15.full.og.viz.png -M /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/4629/d10c/tmpr1gpgxme/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 93.0709 seconds and 1.9 Gi memory with job-memory 6.8 Gi. Percent utilization: 27.65
2023-07-05 17:15:50.407829: Successfully ran: "vg convert -f -Q GRCh38 chr8.vg -B" in 64.3413 seconds and 3.3 Gi memory with job-memory 38.4 Gi. Percent utilization: 8.695
2023-07-05 17:15:51.996241: Successfully ran: "odgi viz -i /data/tmp/9d87903a2d55576d88b97df41ad796d4/387c/a6c8/tmpbmcvrgp5/chr17.full.og.sort -o /data/tmp/9d87903a2d55576d88b97df41ad796d4/387c/a6c8/tmpbmcvrgp5/chr17.full.og.viz.png -M /data/tmp/9d87903a2d55576d88b97df41ad796d4/387c/a6c8/tmpbmcvrgp5/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 91.8341 seconds and 2.1 Gi memory with job-memory 6.8 Gi. Percent utilization: 30.35
2023-07-05 17:15:52.061650: Successfully ran: "odgi sort -i /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9696/7db6/tmpmt94zr8r/chr9.full.og -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9696/7db6/tmpmt94zr8r/chr9.full.og.sort -t 64" in 137.9295 seconds and 4.3 Gi memory with job-memory 12.9 Gi. Percent utilization: 33.59
2023-07-05 17:15:52.061969: Running the command: "odgi paths -i /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9696/7db6/tmpmt94zr8r/chr9.full.og.sort -L"
2023-07-05 17:15:54.116707: Successfully ran: "odgi sort -i /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4843/728d/tmpvt1cxy55/chr3.full.og -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4843/728d/tmpvt1cxy55/chr3.full.og.sort -t 64" in 194.9199 seconds and 4.4 Gi memory with job-memory 14.6 Gi. Percent utilization: 29.91
2023-07-05 17:15:54.117029: Running the command: "odgi paths -i /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4843/728d/tmpvt1cxy55/chr3.full.og.sort -L"
2023-07-05 17:15:55.243491: Successfully ran: "odgi viz -i /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5aa9/3361/tmp7yd4get_/chr18.full.og.sort -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5aa9/3361/tmp7yd4get_/chr18.full.og.viz.png -M /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/5aa9/3361/tmp7yd4get_/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 86.2236 seconds and 1.9 Gi memory with job-memory 6.1 Gi. Percent utilization: 31.11
2023-07-05 17:15:56.570182: Running the command: "odgi squeeze -f /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0d14/347c/tmp9m3kihe_/full.squeeze.input -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0d14/347c/tmp9m3kihe_/full.og -t 64"
2023-07-05 17:15:58.883488: Successfully ran: "odgi sort -i /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/b830/962c/tmprz5ays70/chr10.full.og -o /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/b830/962c/tmprz5ays70/chr10.full.og.sort -t 64" in 144.8418 seconds and 3.3 Gi memory with job-memory 10.8 Gi. Percent utilization: 30.41
2023-07-05 17:15:58.883681: Running the command: "odgi paths -i /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/b830/962c/tmprz5ays70/chr10.full.og.sort -L"
2023-07-05 17:16:00.070332: Successfully ran: "odgi paths -i /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9696/7db6/tmpmt94zr8r/chr9.full.og.sort -L" in 8.0072 seconds and 4.2 Gi memory
2023-07-05 17:16:00.074372: Running the command: "odgi viz -i /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9696/7db6/tmpmt94zr8r/chr9.full.og.sort -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9696/7db6/tmpmt94zr8r/chr9.full.og.viz.png -M /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9696/7db6/tmpmt94zr8r/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:16:03.656682: Successfully ran: "vg convert -f -Q GRCh38 chr6.vg -B" in 76.5106 seconds and 3.6 Gi memory with job-memory 41.7 Gi. Percent utilization: 8.645
2023-07-05 17:16:04.687013: Successfully ran: "odgi paths -i /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4843/728d/tmpvt1cxy55/chr3.full.og.sort -L" in 10.5689 seconds and 4.1 Gi memory
2023-07-05 17:16:04.689610: Running the command: "odgi viz -i /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4843/728d/tmpvt1cxy55/chr3.full.og.sort -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4843/728d/tmpvt1cxy55/chr3.full.og.viz.png -M /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4843/728d/tmpvt1cxy55/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:16:06.377829: Successfully ran: "vg convert -f -Q GRCh38 chr5.vg -B" in 77.8276 seconds and 3.8 Gi memory with job-memory 43.8 Gi. Percent utilization: 8.678
2023-07-05 17:16:06.822811: Successfully ran: "odgi paths -i /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/b830/962c/tmprz5ays70/chr10.full.og.sort -L" in 7.9383 seconds and 3.1 Gi memory
2023-07-05 17:16:06.825478: Running the command: "odgi viz -i /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/b830/962c/tmprz5ays70/chr10.full.og.sort -o /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/b830/962c/tmprz5ays70/chr10.full.og.viz.png -M /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/b830/962c/tmprz5ays70/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:16:07.058669: Successfully ran: "vg convert -f -Q GRCh38 chr7.vg -B" in 73.3874 seconds and 3.6 Gi memory with job-memory 42.0 Gi. Percent utilization: 8.622
2023-07-05 17:16:07.303184: Successfully ran: "odgi sort -i /data/tmp/fb6bb230be1f50648d9c685404953bb7/cb16/0de5/tmpxtqo78e_/chr5.full.og -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/cb16/0de5/tmpxtqo78e_/chr5.full.og.sort -t 64" in 195.4703 seconds and 4.2 Gi memory with job-memory 13.7 Gi. Percent utilization: 30.63
2023-07-05 17:16:07.303519: Running the command: "odgi paths -i /data/tmp/fb6bb230be1f50648d9c685404953bb7/cb16/0de5/tmpxtqo78e_/chr5.full.og.sort -L"
2023-07-05 17:16:11.554088: Successfully ran: "vg convert -f -Q GRCh38 chr9.vg -B" in 74.0812 seconds and 3.5 Gi memory with job-memory 41.2 Gi. Percent utilization: 8.449
2023-07-05 17:16:16.340264: Successfully ran: "vg convert -f -Q GRCh38 chr3.vg -B" in 86.7813 seconds and 3.9 Gi memory with job-memory 46.7 Gi. Percent utilization: 8.242
2023-07-05 17:16:16.630217: Successfully ran: "vg convert -f -Q GRCh38 chr4.vg -B" in 86.1407 seconds and 4.2 Gi memory with job-memory 48.9 Gi. Percent utilization: 8.593
2023-07-05 17:16:17.696029: Successfully ran: "odgi paths -i /data/tmp/fb6bb230be1f50648d9c685404953bb7/cb16/0de5/tmpxtqo78e_/chr5.full.og.sort -L" in 10.391 seconds and 4.0 Gi memory
2023-07-05 17:16:17.699169: Running the command: "odgi viz -i /data/tmp/fb6bb230be1f50648d9c685404953bb7/cb16/0de5/tmpxtqo78e_/chr5.full.og.sort -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/cb16/0de5/tmpxtqo78e_/chr5.full.og.viz.png -M /data/tmp/fb6bb230be1f50648d9c685404953bb7/cb16/0de5/tmpxtqo78e_/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:16:21.253816: Successfully ran: "odgi viz -i /data/tmp/ce3493d5ef82593a9a47d6e926043a80/fba3/b8c2/tmp6bjoy8_u/chr20.full.og.sort -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/fba3/b8c2/tmp6bjoy8_u/chr20.full.og.viz.png -M /data/tmp/ce3493d5ef82593a9a47d6e926043a80/fba3/b8c2/tmp6bjoy8_u/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 75.9084 seconds and 1.8 Gi memory with job-memory 5.8 Gi. Percent utilization: 31.93
2023-07-05 17:16:22.056396: Successfully ran: "odgi viz -i /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/7471/44df/tmp02c6e9zd/chr16.full.og.sort -o /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/7471/44df/tmp02c6e9zd/chr16.full.og.viz.png -M /data/tmp/7a4da834a4a7594cb143ddcde269dd7b/7471/44df/tmp02c6e9zd/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 110.4853 seconds and 2.9 Gi memory with job-memory 9.0 Gi. Percent utilization: 32.37
2023-07-05 17:16:24.551043: Successfully ran: "odgi viz -i /data/tmp/0a9f88a4b0315a71bc09997943db6609/5449/1649/tmp4eoipvg9/chr14.full.og.sort -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/5449/1649/tmp4eoipvg9/chr14.full.og.viz.png -M /data/tmp/0a9f88a4b0315a71bc09997943db6609/5449/1649/tmp4eoipvg9/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 102.7931 seconds and 2.0 Gi memory with job-memory 7.4 Gi. Percent utilization: 27.53
2023-07-05 17:16:28.024810: Successfully ran: "odgi sort -i /data/tmp/0eb100b409605ef9a067a598d4d89da5/01dd/17e3/tmphrjqnoxx/chr8.full.og -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/01dd/17e3/tmphrjqnoxx/chr8.full.og.sort -t 64" in 148.6071 seconds and 3.6 Gi memory with job-memory 12.0 Gi. Percent utilization: 29.62
2023-07-05 17:16:28.025054: Running the command: "odgi paths -i /data/tmp/0eb100b409605ef9a067a598d4d89da5/01dd/17e3/tmphrjqnoxx/chr8.full.og.sort -L"
2023-07-05 17:16:28.543751: Successfully ran: "odgi sort -i /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/6724/3b1f/tmpniyejza3/chr6.full.og -o /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/6724/3b1f/tmpniyejza3/chr6.full.og.sort -t 64" in 172.0556 seconds and 3.8 Gi memory with job-memory 13.0 Gi. Percent utilization: 29.27
2023-07-05 17:16:28.543981: Running the command: "odgi paths -i /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/6724/3b1f/tmpniyejza3/chr6.full.og.sort -L"
2023-07-05 17:16:31.374113: Successfully ran: "odgi viz -i /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4b94/3270/tmpgxam08gz/chrX.full.og.sort -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4b94/3270/tmpgxam08gz/chrX.full.og.viz.png -M /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4b94/3270/tmpgxam08gz/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 115.7888 seconds and 2.6 Gi memory with job-memory 7.3 Gi. Percent utilization: 35.45
2023-07-05 17:16:33.742640: Successfully ran: "odgi sort -i /data/tmp/2a95a9ee729755068515bad92da082de/5147/0bb7/tmp7ri72mk7/chr7.full.og -o /data/tmp/2a95a9ee729755068515bad92da082de/5147/0bb7/tmp7ri72mk7/chr7.full.og.sort -t 64" in 177.8611 seconds and 4.0 Gi memory with job-memory 13.1 Gi. Percent utilization: 30.13
2023-07-05 17:16:33.742864: Running the command: "odgi paths -i /data/tmp/2a95a9ee729755068515bad92da082de/5147/0bb7/tmp7ri72mk7/chr7.full.og.sort -L"
2023-07-05 17:16:36.184205: Successfully ran: "odgi paths -i /data/tmp/0eb100b409605ef9a067a598d4d89da5/01dd/17e3/tmphrjqnoxx/chr8.full.og.sort -L" in 8.1583 seconds and 3.4 Gi memory
2023-07-05 17:16:36.186151: Running the command: "odgi viz -i /data/tmp/0eb100b409605ef9a067a598d4d89da5/01dd/17e3/tmphrjqnoxx/chr8.full.og.sort -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/01dd/17e3/tmphrjqnoxx/chr8.full.og.viz.png -M /data/tmp/0eb100b409605ef9a067a598d4d89da5/01dd/17e3/tmphrjqnoxx/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:16:37.942039: Successfully ran: "odgi paths -i /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/6724/3b1f/tmpniyejza3/chr6.full.og.sort -L" in 9.397 seconds and 3.6 Gi memory
2023-07-05 17:16:37.944916: Running the command: "odgi viz -i /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/6724/3b1f/tmpniyejza3/chr6.full.og.sort -o /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/6724/3b1f/tmpniyejza3/chr6.full.og.viz.png -M /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/6724/3b1f/tmpniyejza3/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:16:41.839361: Successfully ran: "odgi viz -i /data/tmp/9fd0f61929a456269b41669e7d9612f5/732f/3ec7/tmpjs9xnuk5/chr13.full.og.sort -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/732f/3ec7/tmpjs9xnuk5/chr13.full.og.viz.png -M /data/tmp/9fd0f61929a456269b41669e7d9612f5/732f/3ec7/tmpjs9xnuk5/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 111.0746 seconds and 2.3 Gi memory with job-memory 7.7 Gi. Percent utilization: 30.3
2023-07-05 17:16:42.222453: Successfully ran: "vg convert -f -Q GRCh38 chr2.vg -B" in 105.0867 seconds and 5.0 Gi memory with job-memory 58.9 Gi. Percent utilization: 8.438
2023-07-05 17:16:43.394700: Successfully ran: "odgi paths -i /data/tmp/2a95a9ee729755068515bad92da082de/5147/0bb7/tmp7ri72mk7/chr7.full.og.sort -L" in 9.6508 seconds and 3.7 Gi memory
2023-07-05 17:16:43.399630: Running the command: "odgi viz -i /data/tmp/2a95a9ee729755068515bad92da082de/5147/0bb7/tmp7ri72mk7/chr7.full.og.sort -o /data/tmp/2a95a9ee729755068515bad92da082de/5147/0bb7/tmp7ri72mk7/chr7.full.og.viz.png -M /data/tmp/2a95a9ee729755068515bad92da082de/5147/0bb7/tmp7ri72mk7/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:16:49.688727: Successfully ran: "vg convert -f -Q GRCh38 chr1.vg -B" in 113.1801 seconds and 5.0 Gi memory with job-memory 62.1 Gi. Percent utilization: 7.973
2023-07-05 17:17:13.140033: Successfully ran: "odgi sort -i /data/tmp/0eb100b409605ef9a067a598d4d89da5/efbb/a71c/tmp6551wvw8/chr4.full.og -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/efbb/a71c/tmp6551wvw8/chr4.full.og.sort -t 64" in 187.057 seconds and 4.5 Gi memory with job-memory 15.3 Gi. Percent utilization: 29.38
2023-07-05 17:17:13.140358: Running the command: "odgi paths -i /data/tmp/0eb100b409605ef9a067a598d4d89da5/efbb/a71c/tmp6551wvw8/chr4.full.og.sort -L"
2023-07-05 17:17:24.305149: Successfully ran: "odgi paths -i /data/tmp/0eb100b409605ef9a067a598d4d89da5/efbb/a71c/tmp6551wvw8/chr4.full.og.sort -L" in 11.1637 seconds and 4.3 Gi memory
2023-07-05 17:17:24.307381: Running the command: "odgi viz -i /data/tmp/0eb100b409605ef9a067a598d4d89da5/efbb/a71c/tmp6551wvw8/chr4.full.og.sort -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/efbb/a71c/tmp6551wvw8/chr4.full.og.viz.png -M /data/tmp/0eb100b409605ef9a067a598d4d89da5/efbb/a71c/tmp6551wvw8/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:17:28.577883: Successfully ran: "odgi sort -i /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fc1e/e2f9/tmp99fj8c__/chr2.full.og -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fc1e/e2f9/tmp99fj8c__/chr2.full.og.sort -t 64" in 250.2601 seconds and 5.9 Gi memory with job-memory 18.4 Gi. Percent utilization: 31.99
2023-07-05 17:17:28.578208: Running the command: "odgi paths -i /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fc1e/e2f9/tmp99fj8c__/chr2.full.og.sort -L"
2023-07-05 17:17:38.772554: Successfully ran: "odgi sort -i /data/tmp/0a9f88a4b0315a71bc09997943db6609/e3f4/46b2/tmph4_pqise/chr1.full.og -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/e3f4/46b2/tmph4_pqise/chr1.full.og.sort -t 64" in 250.7392 seconds and 6.6 Gi memory with job-memory 19.4 Gi. Percent utilization: 33.88
2023-07-05 17:17:38.772885: Running the command: "odgi paths -i /data/tmp/0a9f88a4b0315a71bc09997943db6609/e3f4/46b2/tmph4_pqise/chr1.full.og.sort -L"
2023-07-05 17:17:42.239781: Successfully ran: "odgi paths -i /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fc1e/e2f9/tmp99fj8c__/chr2.full.og.sort -L" in 13.6604 seconds and 5.6 Gi memory
2023-07-05 17:17:42.244247: Running the command: "odgi viz -i /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fc1e/e2f9/tmp99fj8c__/chr2.full.og.sort -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fc1e/e2f9/tmp99fj8c__/chr2.full.og.viz.png -M /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fc1e/e2f9/tmp99fj8c__/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:17:52.593505: Successfully ran: "odgi paths -i /data/tmp/0a9f88a4b0315a71bc09997943db6609/e3f4/46b2/tmph4_pqise/chr1.full.og.sort -L" in 13.8194 seconds and 6.3 Gi memory
2023-07-05 17:17:52.597863: Running the command: "odgi viz -i /data/tmp/0a9f88a4b0315a71bc09997943db6609/e3f4/46b2/tmph4_pqise/chr1.full.og.sort -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/e3f4/46b2/tmph4_pqise/chr1.full.og.viz.png -M /data/tmp/0a9f88a4b0315a71bc09997943db6609/e3f4/46b2/tmph4_pqise/path_sample_names -t 64 -x 1500 -y 500 -a 10"
2023-07-05 17:18:06.303968: Successfully ran: "odgi viz -i /data/tmp/9fd0f61929a456269b41669e7d9612f5/bf45/ddbe/tmp672b_g7j/chr11.full.og.sort -o /data/tmp/9fd0f61929a456269b41669e7d9612f5/bf45/ddbe/tmp672b_g7j/chr11.full.og.viz.png -M /data/tmp/9fd0f61929a456269b41669e7d9612f5/bf45/ddbe/tmp672b_g7j/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 148.0208 seconds and 3.0 Gi memory with job-memory 10.4 Gi. Percent utilization: 29.14
2023-07-05 17:18:07.335933: Successfully ran: "odgi viz -i /data/tmp/2a95a9ee729755068515bad92da082de/918b/bc00/tmpur4_i41u/chr12.full.og.sort -o /data/tmp/2a95a9ee729755068515bad92da082de/918b/bc00/tmpur4_i41u/chr12.full.og.viz.png -M /data/tmp/2a95a9ee729755068515bad92da082de/918b/bc00/tmpur4_i41u/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 143.706 seconds and 2.9 Gi memory with job-memory 10.1 Gi. Percent utilization: 28.64
2023-07-05 17:18:29.894481: Successfully ran: "odgi viz -i /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9696/7db6/tmpmt94zr8r/chr9.full.og.sort -o /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9696/7db6/tmpmt94zr8r/chr9.full.og.viz.png -M /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9696/7db6/tmpmt94zr8r/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 149.8185 seconds and 4.2 Gi memory with job-memory 12.9 Gi. Percent utilization: 32.83
2023-07-05 17:18:38.738426: Successfully ran: "odgi viz -i /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/b830/962c/tmprz5ays70/chr10.full.og.sort -o /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/b830/962c/tmprz5ays70/chr10.full.og.viz.png -M /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/b830/962c/tmprz5ays70/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 151.9119 seconds and 3.2 Gi memory with job-memory 10.8 Gi. Percent utilization: 29.43
2023-07-05 17:19:04.981522: Successfully ran: "odgi viz -i /data/tmp/0eb100b409605ef9a067a598d4d89da5/01dd/17e3/tmphrjqnoxx/chr8.full.og.sort -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/01dd/17e3/tmphrjqnoxx/chr8.full.og.viz.png -M /data/tmp/0eb100b409605ef9a067a598d4d89da5/01dd/17e3/tmphrjqnoxx/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 148.7943 seconds and 3.4 Gi memory with job-memory 12.0 Gi. Percent utilization: 28.69
2023-07-05 17:19:34.072021: Successfully ran: "odgi viz -i /data/tmp/fb6bb230be1f50648d9c685404953bb7/cb16/0de5/tmpxtqo78e_/chr5.full.og.sort -o /data/tmp/fb6bb230be1f50648d9c685404953bb7/cb16/0de5/tmpxtqo78e_/chr5.full.og.viz.png -M /data/tmp/fb6bb230be1f50648d9c685404953bb7/cb16/0de5/tmpxtqo78e_/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 196.3714 seconds and 4.0 Gi memory with job-memory 13.7 Gi. Percent utilization: 29.45
2023-07-05 17:19:34.648618: Successfully ran: "odgi viz -i /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4843/728d/tmpvt1cxy55/chr3.full.og.sort -o /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4843/728d/tmpvt1cxy55/chr3.full.og.viz.png -M /data/tmp/e41d97042ffa55f1a1fc324d5464836c/4843/728d/tmpvt1cxy55/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 209.9577 seconds and 4.2 Gi memory with job-memory 14.6 Gi. Percent utilization: 28.8
2023-07-05 17:19:45.779057: Successfully ran: "odgi viz -i /data/tmp/2a95a9ee729755068515bad92da082de/5147/0bb7/tmp7ri72mk7/chr7.full.og.sort -o /data/tmp/2a95a9ee729755068515bad92da082de/5147/0bb7/tmp7ri72mk7/chr7.full.og.viz.png -M /data/tmp/2a95a9ee729755068515bad92da082de/5147/0bb7/tmp7ri72mk7/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 182.3778 seconds and 3.8 Gi memory with job-memory 13.1 Gi. Percent utilization: 28.94
2023-07-05 17:19:48.040383: Successfully ran: "odgi viz -i /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/6724/3b1f/tmpniyejza3/chr6.full.og.sort -o /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/6724/3b1f/tmpniyejza3/chr6.full.og.viz.png -M /data/tmp/6a43ffb7ed115f3ea1bb0ff294ea9b41/6724/3b1f/tmpniyejza3/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 190.0942 seconds and 3.7 Gi memory with job-memory 13.0 Gi. Percent utilization: 28.12
2023-07-05 17:20:39.600897: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/f12b/669a/tmp78feyfkw/chr22.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/f12b/669a/tmp78feyfkw/chr22.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 392.349 seconds and 1.7 Gi memory with job-memory 15.7 Gi. Percent utilization: 10.68
2023-07-05 17:20:39.601166: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/f12b/669a/tmp78feyfkw/chr22.vg.clip"
2023-07-05 17:20:56.768143: Successfully ran: "odgi viz -i /data/tmp/0eb100b409605ef9a067a598d4d89da5/efbb/a71c/tmp6551wvw8/chr4.full.og.sort -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/efbb/a71c/tmp6551wvw8/chr4.full.og.viz.png -M /data/tmp/0eb100b409605ef9a067a598d4d89da5/efbb/a71c/tmp6551wvw8/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 212.4595 seconds and 4.3 Gi memory with job-memory 15.3 Gi. Percent utilization: 28.26
2023-07-05 17:21:03.900119: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/f12b/669a/tmp78feyfkw/chr22.vg.clip" in 24.298 seconds and 1.2 Gi memory
2023-07-05 17:21:03.900597: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/9eeeec3d467250f1999ba98b3759d207/f12b/669a/tmp78feyfkw/chr22.vg.clip | awk '{print "chr22	" $0}'"
2023-07-05 17:21:09.172600: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/9eeeec3d467250f1999ba98b3759d207/f12b/669a/tmp78feyfkw/chr22.vg.clip | awk '"'"'{print "chr22	" $0}'"'"''" in 5.271 seconds and 1.2 Gi memory
2023-07-05 17:21:09.173085: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/9eeeec3d467250f1999ba98b3759d207/f12b/669a/tmp78feyfkw/chr22.vg.clip | awk '{print "chr22	" $0}'"
2023-07-05 17:21:10.262684: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/9eeeec3d467250f1999ba98b3759d207/f12b/669a/tmp78feyfkw/chr22.vg.clip | awk '"'"'{print "chr22	" $0}'"'"''" in 1.0887 seconds and 1.2 Gi memory
2023-07-05 17:21:10.263151: Running the command: "awk {print $0 "	chr22"} /data/tmp/9eeeec3d467250f1999ba98b3759d207/f12b/669a/tmp78feyfkw/chr22.vg.clip.bed"
2023-07-05 17:21:10.267661: Successfully ran: "awk '{print $0 "	chr22"}' /data/tmp/9eeeec3d467250f1999ba98b3759d207/f12b/669a/tmp78feyfkw/chr22.vg.clip.bed" in 0.0037 seconds and 3.8 Mi memory
2023-07-05 17:21:15.032980: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/0eb100b409605ef9a067a598d4d89da5/59a1/d0cc/tmp_h1i2i5c/chrX.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/59a1/d0cc/tmp_h1i2i5c/chrX.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 458.9704 seconds and 3.2 Gi memory with job-memory 29.2 Gi. Percent utilization: 10.8
2023-07-05 17:21:15.033275: Running the command: "vg validate /data/tmp/0eb100b409605ef9a067a598d4d89da5/59a1/d0cc/tmp_h1i2i5c/chrX.vg.clip"
2023-07-05 17:21:44.814799: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/0eb100b409605ef9a067a598d4d89da5/6923/0056/tmpujrwp311/chr18.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/6923/0056/tmpujrwp311/chr18.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 498.568 seconds and 2.6 Gi memory with job-memory 24.5 Gi. Percent utilization: 10.54
2023-07-05 17:21:44.815092: Running the command: "vg validate /data/tmp/0eb100b409605ef9a067a598d4d89da5/6923/0056/tmpujrwp311/chr18.vg.clip"
2023-07-05 17:22:04.104859: Successfully ran: "vg validate /data/tmp/0eb100b409605ef9a067a598d4d89da5/59a1/d0cc/tmp_h1i2i5c/chrX.vg.clip" in 49.0709 seconds and 2.1 Gi memory
2023-07-05 17:22:04.105226: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/0eb100b409605ef9a067a598d4d89da5/59a1/d0cc/tmp_h1i2i5c/chrX.vg.clip | awk '{print "chrX	" $0}'"
2023-07-05 17:22:07.833486: Successfully ran: "odgi viz -i /data/tmp/0a9f88a4b0315a71bc09997943db6609/e3f4/46b2/tmph4_pqise/chr1.full.og.sort -o /data/tmp/0a9f88a4b0315a71bc09997943db6609/e3f4/46b2/tmph4_pqise/chr1.full.og.viz.png -M /data/tmp/0a9f88a4b0315a71bc09997943db6609/e3f4/46b2/tmph4_pqise/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 255.2344 seconds and 6.4 Gi memory with job-memory 19.4 Gi. Percent utilization: 32.87
2023-07-05 17:22:08.133455: Successfully ran: "odgi viz -i /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fc1e/e2f9/tmp99fj8c__/chr2.full.og.sort -o /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fc1e/e2f9/tmp99fj8c__/chr2.full.og.viz.png -M /data/tmp/f2e5d94f9eaa5514ac396e74254b92ca/fc1e/e2f9/tmp99fj8c__/path_sample_names -t 64 -x 1500 -y 500 -a 10" in 265.888 seconds and 5.7 Gi memory with job-memory 18.4 Gi. Percent utilization: 30.92
2023-07-05 17:22:08.741972: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/0eb100b409605ef9a067a598d4d89da5/86d5/ac12/tmpoet_87_4/chr15.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/86d5/ac12/tmpoet_87_4/chr15.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 517.314 seconds and 2.8 Gi memory with job-memory 27.2 Gi. Percent utilization: 10.33
2023-07-05 17:22:08.742278: Running the command: "vg validate /data/tmp/0eb100b409605ef9a067a598d4d89da5/86d5/ac12/tmpoet_87_4/chr15.vg.clip"
2023-07-05 17:22:12.598250: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/0eb100b409605ef9a067a598d4d89da5/59a1/d0cc/tmp_h1i2i5c/chrX.vg.clip | awk '"'"'{print "chrX	" $0}'"'"''" in 8.4923 seconds and 2.1 Gi memory
2023-07-05 17:22:12.598600: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/0eb100b409605ef9a067a598d4d89da5/59a1/d0cc/tmp_h1i2i5c/chrX.vg.clip | awk '{print "chrX	" $0}'"
2023-07-05 17:22:14.286504: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/0eb100b409605ef9a067a598d4d89da5/59a1/d0cc/tmp_h1i2i5c/chrX.vg.clip | awk '"'"'{print "chrX	" $0}'"'"''" in 1.6872 seconds and 2.1 Gi memory
2023-07-05 17:22:14.287034: Running the command: "awk {print $0 "	chrX"} /data/tmp/0eb100b409605ef9a067a598d4d89da5/59a1/d0cc/tmp_h1i2i5c/chrX.vg.clip.bed"
2023-07-05 17:22:14.291409: Successfully ran: "awk '{print $0 "	chrX"}' /data/tmp/0eb100b409605ef9a067a598d4d89da5/59a1/d0cc/tmp_h1i2i5c/chrX.vg.clip.bed" in 0.0038 seconds and 3.7 Mi memory
2023-07-05 17:22:20.710571: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/0eb100b409605ef9a067a598d4d89da5/3911/5283/tmpq9ll0nla/chr20.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/3911/5283/tmpq9ll0nla/chr20.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 538.151 seconds and 2.5 Gi memory with job-memory 23.1 Gi. Percent utilization: 10.67
2023-07-05 17:22:20.710844: Running the command: "vg validate /data/tmp/0eb100b409605ef9a067a598d4d89da5/3911/5283/tmpq9ll0nla/chr20.vg.clip"
2023-07-05 17:22:32.200690: Successfully ran: "vg validate /data/tmp/0eb100b409605ef9a067a598d4d89da5/6923/0056/tmpujrwp311/chr18.vg.clip" in 47.3846 seconds and 1.9 Gi memory
2023-07-05 17:22:32.201079: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/0eb100b409605ef9a067a598d4d89da5/6923/0056/tmpujrwp311/chr18.vg.clip | awk '{print "chr18	" $0}'"
2023-07-05 17:22:39.249115: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/0eb100b409605ef9a067a598d4d89da5/6923/0056/tmpujrwp311/chr18.vg.clip | awk '"'"'{print "chr18	" $0}'"'"''" in 7.0472 seconds and 1.9 Gi memory
2023-07-05 17:22:39.249512: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/0eb100b409605ef9a067a598d4d89da5/6923/0056/tmpujrwp311/chr18.vg.clip | awk '{print "chr18	" $0}'"
2023-07-05 17:22:40.716146: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/0eb100b409605ef9a067a598d4d89da5/6923/0056/tmpujrwp311/chr18.vg.clip | awk '"'"'{print "chr18	" $0}'"'"''" in 1.4659 seconds and 1.8 Gi memory
2023-07-05 17:22:40.716488: Running the command: "awk {print $0 "	chr18"} /data/tmp/0eb100b409605ef9a067a598d4d89da5/6923/0056/tmpujrwp311/chr18.vg.clip.bed"
2023-07-05 17:22:40.721366: Successfully ran: "awk '{print $0 "	chr18"}' /data/tmp/0eb100b409605ef9a067a598d4d89da5/6923/0056/tmpujrwp311/chr18.vg.clip.bed" in 0.0043 seconds and 3.8 Mi memory
2023-07-05 17:23:00.181765: Successfully ran: "vg validate /data/tmp/0eb100b409605ef9a067a598d4d89da5/3911/5283/tmpq9ll0nla/chr20.vg.clip" in 39.4701 seconds and 1.5 Gi memory
2023-07-05 17:23:00.182166: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/0eb100b409605ef9a067a598d4d89da5/3911/5283/tmpq9ll0nla/chr20.vg.clip | awk '{print "chr20	" $0}'"
2023-07-05 17:23:00.513887: Successfully ran: "vg validate /data/tmp/0eb100b409605ef9a067a598d4d89da5/86d5/ac12/tmpoet_87_4/chr15.vg.clip" in 51.7708 seconds and 2.0 Gi memory
2023-07-05 17:23:00.514307: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/0eb100b409605ef9a067a598d4d89da5/86d5/ac12/tmpoet_87_4/chr15.vg.clip | awk '{print "chr15	" $0}'"
2023-07-05 17:23:06.063324: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/0eb100b409605ef9a067a598d4d89da5/3911/5283/tmpq9ll0nla/chr20.vg.clip | awk '"'"'{print "chr20	" $0}'"'"''" in 5.8804 seconds and 1.5 Gi memory
2023-07-05 17:23:06.063710: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/0eb100b409605ef9a067a598d4d89da5/3911/5283/tmpq9ll0nla/chr20.vg.clip | awk '{print "chr20	" $0}'"
2023-07-05 17:23:07.175204: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/0eb100b409605ef9a067a598d4d89da5/3911/5283/tmpq9ll0nla/chr20.vg.clip | awk '"'"'{print "chr20	" $0}'"'"''" in 1.1106 seconds and 1.4 Gi memory
2023-07-05 17:23:07.175560: Running the command: "awk {print $0 "	chr20"} /data/tmp/0eb100b409605ef9a067a598d4d89da5/3911/5283/tmpq9ll0nla/chr20.vg.clip.bed"
2023-07-05 17:23:07.180206: Successfully ran: "awk '{print $0 "	chr20"}' /data/tmp/0eb100b409605ef9a067a598d4d89da5/3911/5283/tmpq9ll0nla/chr20.vg.clip.bed" in 0.004 seconds and 3.6 Mi memory
2023-07-05 17:23:08.355716: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/0eb100b409605ef9a067a598d4d89da5/86d5/ac12/tmpoet_87_4/chr15.vg.clip | awk '"'"'{print "chr15	" $0}'"'"''" in 7.8406 seconds and 2.0 Gi memory
2023-07-05 17:23:08.356079: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/0eb100b409605ef9a067a598d4d89da5/86d5/ac12/tmpoet_87_4/chr15.vg.clip | awk '{print "chr15	" $0}'"
2023-07-05 17:23:09.948490: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/0eb100b409605ef9a067a598d4d89da5/86d5/ac12/tmpoet_87_4/chr15.vg.clip | awk '"'"'{print "chr15	" $0}'"'"''" in 1.5917 seconds and 2.0 Gi memory
2023-07-05 17:23:09.948829: Running the command: "awk {print $0 "	chr15"} /data/tmp/0eb100b409605ef9a067a598d4d89da5/86d5/ac12/tmpoet_87_4/chr15.vg.clip.bed"
2023-07-05 17:23:09.953101: Successfully ran: "awk '{print $0 "	chr15"}' /data/tmp/0eb100b409605ef9a067a598d4d89da5/86d5/ac12/tmpoet_87_4/chr15.vg.clip.bed" in 0.0037 seconds and 3.8 Mi memory
2023-07-05 17:25:24.244282: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7c5e/2695/tmpho9b8fu2/chr19.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7c5e/2695/tmpho9b8fu2/chr19.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 704.3805 seconds and 2.6 Gi memory with job-memory 24.7 Gi. Percent utilization: 10.42
2023-07-05 17:25:24.244512: Running the command: "vg validate /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7c5e/2695/tmpho9b8fu2/chr19.vg.clip"
2023-07-05 17:25:40.989846: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e50e/ee17/tmpu0wq0vfd/chr21.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e50e/ee17/tmpu0wq0vfd/chr21.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 747.1031 seconds and 1.7 Gi memory with job-memory 16.4 Gi. Percent utilization: 10.6
2023-07-05 17:25:40.990078: Running the command: "vg validate /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e50e/ee17/tmpu0wq0vfd/chr21.vg.clip"
2023-07-05 17:26:13.572413: Successfully ran: "vg validate /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e50e/ee17/tmpu0wq0vfd/chr21.vg.clip" in 32.5816 seconds and 1.2 Gi memory
2023-07-05 17:26:13.572743: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e50e/ee17/tmpu0wq0vfd/chr21.vg.clip | awk '{print "chr21	" $0}'"
2023-07-05 17:26:16.341511: Successfully ran: "vg validate /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7c5e/2695/tmpho9b8fu2/chr19.vg.clip" in 52.0963 seconds and 1.6 Gi memory
2023-07-05 17:26:16.341848: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7c5e/2695/tmpho9b8fu2/chr19.vg.clip | awk '{print "chr19	" $0}'"
2023-07-05 17:26:19.826218: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e50e/ee17/tmpu0wq0vfd/chr21.vg.clip | awk '"'"'{print "chr21	" $0}'"'"''" in 6.2528 seconds and 1.2 Gi memory
2023-07-05 17:26:19.826528: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e50e/ee17/tmpu0wq0vfd/chr21.vg.clip | awk '{print "chr21	" $0}'"
2023-07-05 17:26:20.887001: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e50e/ee17/tmpu0wq0vfd/chr21.vg.clip | awk '"'"'{print "chr21	" $0}'"'"''" in 1.0598 seconds and 1.1 Gi memory
2023-07-05 17:26:20.887282: Running the command: "awk {print $0 "	chr21"} /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e50e/ee17/tmpu0wq0vfd/chr21.vg.clip.bed"
2023-07-05 17:26:20.892199: Successfully ran: "awk '{print $0 "	chr21"}' /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e50e/ee17/tmpu0wq0vfd/chr21.vg.clip.bed" in 0.0036 seconds and 3.7 Mi memory
2023-07-05 17:26:26.651676: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7c5e/2695/tmpho9b8fu2/chr19.vg.clip | awk '"'"'{print "chr19	" $0}'"'"''" in 10.3091 seconds and 1.6 Gi memory
2023-07-05 17:26:26.651994: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7c5e/2695/tmpho9b8fu2/chr19.vg.clip | awk '{print "chr19	" $0}'"
2023-07-05 17:26:28.093047: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7c5e/2695/tmpho9b8fu2/chr19.vg.clip | awk '"'"'{print "chr19	" $0}'"'"''" in 1.4404 seconds and 1.6 Gi memory
2023-07-05 17:26:28.093339: Running the command: "awk {print $0 "	chr19"} /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7c5e/2695/tmpho9b8fu2/chr19.vg.clip.bed"
2023-07-05 17:26:28.098834: Successfully ran: "awk '{print $0 "	chr19"}' /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7c5e/2695/tmpho9b8fu2/chr19.vg.clip.bed" in 0.0049 seconds and 3.8 Mi memory
2023-07-05 17:27:52.304062: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/ce3493d5ef82593a9a47d6e926043a80/56fd/d031/tmpgsjwhz57/chr17.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/56fd/d031/tmpgsjwhz57/chr17.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 837.294 seconds and 2.9 Gi memory with job-memory 27.1 Gi. Percent utilization: 10.5
2023-07-05 17:27:52.304294: Running the command: "vg validate /data/tmp/ce3493d5ef82593a9a47d6e926043a80/56fd/d031/tmpgsjwhz57/chr17.vg.clip"
2023-07-05 17:28:02.070117: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/ce3493d5ef82593a9a47d6e926043a80/2ff5/fd2b/tmp6ai2ylqf/chr13.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/2ff5/fd2b/tmp6ai2ylqf/chr13.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 850.0702 seconds and 3.3 Gi memory with job-memory 30.9 Gi. Percent utilization: 10.76
2023-07-05 17:28:02.070365: Running the command: "vg validate /data/tmp/ce3493d5ef82593a9a47d6e926043a80/2ff5/fd2b/tmp6ai2ylqf/chr13.vg.clip"
2023-07-05 17:28:47.762699: Successfully ran: "vg validate /data/tmp/ce3493d5ef82593a9a47d6e926043a80/56fd/d031/tmpgsjwhz57/chr17.vg.clip" in 55.4577 seconds and 1.9 Gi memory
2023-07-05 17:28:47.763036: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/ce3493d5ef82593a9a47d6e926043a80/56fd/d031/tmpgsjwhz57/chr17.vg.clip | awk '{print "chr17	" $0}'"
2023-07-05 17:28:57.630092: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/ce3493d5ef82593a9a47d6e926043a80/56fd/d031/tmpgsjwhz57/chr17.vg.clip | awk '"'"'{print "chr17	" $0}'"'"''" in 9.8664 seconds and 1.8 Gi memory
2023-07-05 17:28:57.630403: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/ce3493d5ef82593a9a47d6e926043a80/56fd/d031/tmpgsjwhz57/chr17.vg.clip | awk '{print "chr17	" $0}'"
2023-07-05 17:28:59.470564: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/ce3493d5ef82593a9a47d6e926043a80/56fd/d031/tmpgsjwhz57/chr17.vg.clip | awk '"'"'{print "chr17	" $0}'"'"''" in 1.8395 seconds and 1.9 Gi memory
2023-07-05 17:28:59.470869: Running the command: "awk {print $0 "	chr17"} /data/tmp/ce3493d5ef82593a9a47d6e926043a80/56fd/d031/tmpgsjwhz57/chr17.vg.clip.bed"
2023-07-05 17:28:59.475457: Successfully ran: "awk '{print $0 "	chr17"}' /data/tmp/ce3493d5ef82593a9a47d6e926043a80/56fd/d031/tmpgsjwhz57/chr17.vg.clip.bed" in 0.004 seconds and 3.7 Mi memory
2023-07-05 17:29:13.794179: Successfully ran: "vg validate /data/tmp/ce3493d5ef82593a9a47d6e926043a80/2ff5/fd2b/tmp6ai2ylqf/chr13.vg.clip" in 71.7231 seconds and 2.1 Gi memory
2023-07-05 17:29:13.794523: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/ce3493d5ef82593a9a47d6e926043a80/2ff5/fd2b/tmp6ai2ylqf/chr13.vg.clip | awk '{print "chr13	" $0}'"
2023-07-05 17:29:29.976993: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/ce3493d5ef82593a9a47d6e926043a80/2ff5/fd2b/tmp6ai2ylqf/chr13.vg.clip | awk '"'"'{print "chr13	" $0}'"'"''" in 16.1818 seconds and 2.4 Gi memory
2023-07-05 17:29:29.977324: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/ce3493d5ef82593a9a47d6e926043a80/2ff5/fd2b/tmp6ai2ylqf/chr13.vg.clip | awk '{print "chr13	" $0}'"
2023-07-05 17:29:32.194219: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/ce3493d5ef82593a9a47d6e926043a80/2ff5/fd2b/tmp6ai2ylqf/chr13.vg.clip | awk '"'"'{print "chr13	" $0}'"'"''" in 2.2162 seconds and 2.4 Gi memory
2023-07-05 17:29:32.194529: Running the command: "awk {print $0 "	chr13"} /data/tmp/ce3493d5ef82593a9a47d6e926043a80/2ff5/fd2b/tmp6ai2ylqf/chr13.vg.clip.bed"
2023-07-05 17:29:32.198852: Successfully ran: "awk '{print $0 "	chr13"}' /data/tmp/ce3493d5ef82593a9a47d6e926043a80/2ff5/fd2b/tmp6ai2ylqf/chr13.vg.clip.bed" in 0.0037 seconds and 3.7 Mi memory
2023-07-05 17:30:28.633599: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/a808/a917/tmp3rbcjuou/chr14.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/a808/a917/tmp3rbcjuou/chr14.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 945.9074 seconds and 3.1 Gi memory with job-memory 29.5 Gi. Percent utilization: 10.67
2023-07-05 17:30:28.633963: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/a808/a917/tmp3rbcjuou/chr14.vg.clip"
2023-07-05 17:31:30.317592: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7e85/3b2c/tmpkpert6k4/chr16.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7e85/3b2c/tmpkpert6k4/chr16.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 1049.7864 seconds and 3.7 Gi memory with job-memory 35.9 Gi. Percent utilization: 10.24
2023-07-05 17:31:30.317821: Running the command: "vg validate /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7e85/3b2c/tmpkpert6k4/chr16.vg.clip"
2023-07-05 17:31:32.712896: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/a808/a917/tmp3rbcjuou/chr14.vg.clip" in 64.078 seconds and 2.2 Gi memory
2023-07-05 17:31:32.713389: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/9eeeec3d467250f1999ba98b3759d207/a808/a917/tmp3rbcjuou/chr14.vg.clip | awk '{print "chr14	" $0}'"
2023-07-05 17:31:45.304884: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/9eeeec3d467250f1999ba98b3759d207/a808/a917/tmp3rbcjuou/chr14.vg.clip | awk '"'"'{print "chr14	" $0}'"'"''" in 12.5905 seconds and 2.3 Gi memory
2023-07-05 17:31:45.305362: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/9eeeec3d467250f1999ba98b3759d207/a808/a917/tmp3rbcjuou/chr14.vg.clip | awk '{print "chr14	" $0}'"
2023-07-05 17:31:47.509250: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/9eeeec3d467250f1999ba98b3759d207/a808/a917/tmp3rbcjuou/chr14.vg.clip | awk '"'"'{print "chr14	" $0}'"'"''" in 2.203 seconds and 2.3 Gi memory
2023-07-05 17:31:47.509703: Running the command: "awk {print $0 "	chr14"} /data/tmp/9eeeec3d467250f1999ba98b3759d207/a808/a917/tmp3rbcjuou/chr14.vg.clip.bed"
2023-07-05 17:31:47.514359: Successfully ran: "awk '{print $0 "	chr14"}' /data/tmp/9eeeec3d467250f1999ba98b3759d207/a808/a917/tmp3rbcjuou/chr14.vg.clip.bed" in 0.0039 seconds and 3.8 Mi memory
2023-07-05 17:32:21.205025: Successfully ran: "odgi squeeze -f /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0d14/347c/tmp9m3kihe_/full.squeeze.input -o /data/tmp/26ecc716f7a75b4fa4aab14527c65d50/0d14/347c/tmp9m3kihe_/full.og -t 64" in 984.6332 seconds and 112.8 Gi memory with job-memory 235.3 Gi. Percent utilization: 47.94
2023-07-05 17:32:26.553799: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/0eb100b409605ef9a067a598d4d89da5/27ce/cc1d/tmp52_p_x7x/chr5.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/27ce/cc1d/tmp52_p_x7x/chr5.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 1103.1082 seconds and 6.0 Gi memory with job-memory 54.7 Gi. Percent utilization: 11.0
2023-07-05 17:32:26.554156: Running the command: "vg validate /data/tmp/0eb100b409605ef9a067a598d4d89da5/27ce/cc1d/tmp52_p_x7x/chr5.vg.clip"
2023-07-05 17:32:47.562349: Successfully ran: "vg validate /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7e85/3b2c/tmpkpert6k4/chr16.vg.clip" in 77.2438 seconds and 2.5 Gi memory
2023-07-05 17:32:47.562680: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7e85/3b2c/tmpkpert6k4/chr16.vg.clip | awk '{print "chr16	" $0}'"
2023-07-05 17:33:04.264059: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7e85/3b2c/tmpkpert6k4/chr16.vg.clip | awk '"'"'{print "chr16	" $0}'"'"''" in 16.7 seconds and 2.4 Gi memory
2023-07-05 17:33:04.264367: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7e85/3b2c/tmpkpert6k4/chr16.vg.clip | awk '{print "chr16	" $0}'"
2023-07-05 17:33:06.480922: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7e85/3b2c/tmpkpert6k4/chr16.vg.clip | awk '"'"'{print "chr16	" $0}'"'"''" in 2.2159 seconds and 2.4 Gi memory
2023-07-05 17:33:06.481218: Running the command: "awk {print $0 "	chr16"} /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7e85/3b2c/tmpkpert6k4/chr16.vg.clip.bed"
2023-07-05 17:33:06.486108: Successfully ran: "awk '{print $0 "	chr16"}' /data/tmp/ce3493d5ef82593a9a47d6e926043a80/7e85/3b2c/tmpkpert6k4/chr16.vg.clip.bed" in 0.0043 seconds and 3.6 Mi memory
2023-07-05 17:33:11.504211: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/0eb100b409605ef9a067a598d4d89da5/4815/e338/tmp7xqky83b/chr8.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/4815/e338/tmp7xqky83b/chr8.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 1152.5908 seconds and 5.2 Gi memory with job-memory 48.0 Gi. Percent utilization: 10.8
2023-07-05 17:33:11.504507: Running the command: "vg validate /data/tmp/0eb100b409605ef9a067a598d4d89da5/4815/e338/tmp7xqky83b/chr8.vg.clip"
2023-07-05 17:33:12.447910: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/0eb100b409605ef9a067a598d4d89da5/9b9d/8d92/tmphygtsr1l/chr6.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/9b9d/8d92/tmphygtsr1l/chr6.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 1150.5426 seconds and 5.8 Gi memory with job-memory 52.1 Gi. Percent utilization: 11.06
2023-07-05 17:33:12.448190: Running the command: "vg validate /data/tmp/0eb100b409605ef9a067a598d4d89da5/9b9d/8d92/tmphygtsr1l/chr6.vg.clip"
2023-07-05 17:33:15.670593: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/ce3493d5ef82593a9a47d6e926043a80/4865/68ba/tmpjos_6xf5/chr12.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/4865/68ba/tmpjos_6xf5/chr12.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 1149.7826 seconds and 4.5 Gi memory with job-memory 40.3 Gi. Percent utilization: 11.12
2023-07-05 17:33:15.670823: Running the command: "vg validate /data/tmp/ce3493d5ef82593a9a47d6e926043a80/4865/68ba/tmpjos_6xf5/chr12.vg.clip"
Issued job 'make_vg_indexes' kind-make_vg_indexes/instance-ug26v1b3 v1 with job batch system ID: 2944 and disk: 282.4 Gi, memory: 235.3 Gi, cores: 64, accelerators: [], preemptible: False
2023-07-05 17:34:06.938827: Successfully ran: "vg validate /data/tmp/0eb100b409605ef9a067a598d4d89da5/27ce/cc1d/tmp52_p_x7x/chr5.vg.clip" in 100.3837 seconds and 4.1 Gi memory
2023-07-05 17:34:06.939220: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/0eb100b409605ef9a067a598d4d89da5/27ce/cc1d/tmp52_p_x7x/chr5.vg.clip | awk '{print "chr5	" $0}'"
2023-07-05 17:34:11.084191: Running the command: "bash -c set -eo pipefail && grep -v '^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr1.vg.gfa | sed -e 1s/_MINIGRAPH_//"
2023-07-05 17:34:20.798316: Successfully ran: "bash -c 'set -eo pipefail && grep -v '"'"'^W	_MINIGRAPH_'"'"' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr1.vg.gfa | sed -e 1s/_MINIGRAPH_//'" in 9.7125 seconds and 58.5 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.02426
2023-07-05 17:34:23.792078: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/0eb100b409605ef9a067a598d4d89da5/27ce/cc1d/tmp52_p_x7x/chr5.vg.clip | awk '"'"'{print "chr5	" $0}'"'"''" in 16.8521 seconds and 4.1 Gi memory
2023-07-05 17:34:23.792427: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/0eb100b409605ef9a067a598d4d89da5/27ce/cc1d/tmp52_p_x7x/chr5.vg.clip | awk '{print "chr5	" $0}'"
2023-07-05 17:34:26.499686: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr10.vg.gfa"
2023-07-05 17:34:27.330363: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/0eb100b409605ef9a067a598d4d89da5/27ce/cc1d/tmp52_p_x7x/chr5.vg.clip | awk '"'"'{print "chr5	" $0}'"'"''" in 3.5373 seconds and 4.1 Gi memory
2023-07-05 17:34:27.330694: Running the command: "awk {print $0 "	chr5"} /data/tmp/0eb100b409605ef9a067a598d4d89da5/27ce/cc1d/tmp52_p_x7x/chr5.vg.clip.bed"
2023-07-05 17:34:27.335857: Successfully ran: "awk '{print $0 "	chr5"}' /data/tmp/0eb100b409605ef9a067a598d4d89da5/27ce/cc1d/tmp52_p_x7x/chr5.vg.clip.bed" in 0.0046 seconds and 3.7 Mi memory
2023-07-05 17:34:31.031893: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr10.vg.gfa" in 4.53 seconds and 26.1 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01082
2023-07-05 17:34:35.401457: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/ce3493d5ef82593a9a47d6e926043a80/c10c/b22b/tmpoqn8f_c_/chr11.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/c10c/b22b/tmpoqn8f_c_/chr11.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 1228.7281 seconds and 4.3 Gi memory with job-memory 41.5 Gi. Percent utilization: 10.36
2023-07-05 17:34:35.401690: Running the command: "vg validate /data/tmp/ce3493d5ef82593a9a47d6e926043a80/c10c/b22b/tmpoqn8f_c_/chr11.vg.clip"
2023-07-05 17:34:36.491345: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr11.vg.gfa"
2023-07-05 17:34:40.087306: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr11.vg.gfa" in 3.5944 seconds and 26.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01079
2023-07-05 17:34:45.258824: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr12.vg.gfa"
2023-07-05 17:34:46.533892: Successfully ran: "vg validate /data/tmp/0eb100b409605ef9a067a598d4d89da5/4815/e338/tmp7xqky83b/chr8.vg.clip" in 95.0284 seconds and 3.2 Gi memory
2023-07-05 17:34:46.534268: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/0eb100b409605ef9a067a598d4d89da5/4815/e338/tmp7xqky83b/chr8.vg.clip | awk '{print "chr8	" $0}'"
2023-07-05 17:34:48.746804: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr12.vg.gfa" in 3.4865 seconds and 26.2 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01087
2023-07-05 17:34:52.796436: Successfully ran: "vg validate /data/tmp/ce3493d5ef82593a9a47d6e926043a80/4865/68ba/tmpjos_6xf5/chr12.vg.clip" in 97.1248 seconds and 2.8 Gi memory
2023-07-05 17:34:52.796758: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/ce3493d5ef82593a9a47d6e926043a80/4865/68ba/tmpjos_6xf5/chr12.vg.clip | awk '{print "chr12	" $0}'"
2023-07-05 17:34:54.039512: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr13.vg.gfa"
2023-07-05 17:34:56.808092: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr13.vg.gfa" in 2.7674 seconds and 26.2 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01087
2023-07-05 17:35:00.196166: Successfully ran: "vg validate /data/tmp/0eb100b409605ef9a067a598d4d89da5/9b9d/8d92/tmphygtsr1l/chr6.vg.clip" in 107.7472 seconds and 3.9 Gi memory
2023-07-05 17:35:00.196540: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/0eb100b409605ef9a067a598d4d89da5/9b9d/8d92/tmphygtsr1l/chr6.vg.clip | awk '{print "chr6	" $0}'"
2023-07-05 17:35:01.523504: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/0eb100b409605ef9a067a598d4d89da5/4815/e338/tmp7xqky83b/chr8.vg.clip | awk '"'"'{print "chr8	" $0}'"'"''" in 14.9885 seconds and 3.2 Gi memory
2023-07-05 17:35:01.523883: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/0eb100b409605ef9a067a598d4d89da5/4815/e338/tmp7xqky83b/chr8.vg.clip | awk '{print "chr8	" $0}'"
2023-07-05 17:35:02.528504: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr14.vg.gfa"
2023-07-05 17:35:03.912071: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/0eb100b409605ef9a067a598d4d89da5/4815/e338/tmp7xqky83b/chr8.vg.clip | awk '"'"'{print "chr8	" $0}'"'"''" in 2.3875 seconds and 3.2 Gi memory
2023-07-05 17:35:03.912405: Running the command: "awk {print $0 "	chr8"} /data/tmp/0eb100b409605ef9a067a598d4d89da5/4815/e338/tmp7xqky83b/chr8.vg.clip.bed"
2023-07-05 17:35:03.917219: Successfully ran: "awk '{print $0 "	chr8"}' /data/tmp/0eb100b409605ef9a067a598d4d89da5/4815/e338/tmp7xqky83b/chr8.vg.clip.bed" in 0.0043 seconds and 3.7 Mi memory
2023-07-05 17:35:05.523543: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr14.vg.gfa" in 2.9929 seconds and 26.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01078
2023-07-05 17:35:10.437515: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr15.vg.gfa"
2023-07-05 17:35:12.844729: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr15.vg.gfa" in 2.4057 seconds and 26.2 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01087
2023-07-05 17:35:16.648673: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/ce3493d5ef82593a9a47d6e926043a80/4865/68ba/tmpjos_6xf5/chr12.vg.clip | awk '"'"'{print "chr12	" $0}'"'"''" in 23.8512 seconds and 2.8 Gi memory
2023-07-05 17:35:16.648984: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/ce3493d5ef82593a9a47d6e926043a80/4865/68ba/tmpjos_6xf5/chr12.vg.clip | awk '{print "chr12	" $0}'"
2023-07-05 17:35:17.221215: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/0eb100b409605ef9a067a598d4d89da5/9b9d/8d92/tmphygtsr1l/chr6.vg.clip | awk '"'"'{print "chr6	" $0}'"'"''" in 17.0239 seconds and 3.8 Gi memory
2023-07-05 17:35:17.221619: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/0eb100b409605ef9a067a598d4d89da5/9b9d/8d92/tmphygtsr1l/chr6.vg.clip | awk '{print "chr6	" $0}'"
2023-07-05 17:35:19.361074: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/ce3493d5ef82593a9a47d6e926043a80/4865/68ba/tmpjos_6xf5/chr12.vg.clip | awk '"'"'{print "chr12	" $0}'"'"''" in 2.7114 seconds and 2.8 Gi memory
2023-07-05 17:35:19.361376: Running the command: "awk {print $0 "	chr12"} /data/tmp/ce3493d5ef82593a9a47d6e926043a80/4865/68ba/tmpjos_6xf5/chr12.vg.clip.bed"
2023-07-05 17:35:19.366152: Successfully ran: "awk '{print $0 "	chr12"}' /data/tmp/ce3493d5ef82593a9a47d6e926043a80/4865/68ba/tmpjos_6xf5/chr12.vg.clip.bed" in 0.0042 seconds and 3.8 Mi memory
2023-07-05 17:35:19.653059: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr16.vg.gfa"
2023-07-05 17:35:20.452932: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/0eb100b409605ef9a067a598d4d89da5/9b9d/8d92/tmphygtsr1l/chr6.vg.clip | awk '"'"'{print "chr6	" $0}'"'"''" in 3.2306 seconds and 3.8 Gi memory
2023-07-05 17:35:20.453299: Running the command: "awk {print $0 "	chr6"} /data/tmp/0eb100b409605ef9a067a598d4d89da5/9b9d/8d92/tmphygtsr1l/chr6.vg.clip.bed"
2023-07-05 17:35:20.457955: Successfully ran: "awk '{print $0 "	chr6"}' /data/tmp/0eb100b409605ef9a067a598d4d89da5/9b9d/8d92/tmphygtsr1l/chr6.vg.clip.bed" in 0.0041 seconds and 3.7 Mi memory
2023-07-05 17:35:22.958493: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr16.vg.gfa" in 3.3038 seconds and 25.9 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01076
2023-07-05 17:35:27.972032: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr17.vg.gfa"
2023-07-05 17:35:30.470724: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr17.vg.gfa" in 2.4971 seconds and 26.1 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01082
2023-07-05 17:35:34.471427: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr18.vg.gfa"
2023-07-05 17:35:36.540207: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr18.vg.gfa" in 2.0675 seconds and 13.9 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.005776
2023-07-05 17:35:40.997071: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr19.vg.gfa"
2023-07-05 17:35:41.692703: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e45b/bc54/tmpbbu7rf_j/chr10.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e45b/bc54/tmpbbu7rf_j/chr10.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 1290.1094 seconds and 4.5 Gi memory with job-memory 43.3 Gi. Percent utilization: 10.41
2023-07-05 17:35:41.692940: Running the command: "vg validate /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e45b/bc54/tmpbbu7rf_j/chr10.vg.clip"
2023-07-05 17:35:43.414395: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr19.vg.gfa" in 2.4152 seconds and 14.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.005805
2023-07-05 17:35:53.991882: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr2.vg.gfa"
2023-07-05 17:36:00.178408: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr2.vg.gfa" in 6.185 seconds and 50.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.02076
2023-07-05 17:36:04.508290: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr20.vg.gfa"
2023-07-05 17:36:06.433740: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr20.vg.gfa" in 1.9239 seconds and 14.2 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.005894
2023-07-05 17:36:09.302014: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr21.vg.gfa"
2023-07-05 17:36:10.665466: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr21.vg.gfa" in 1.3622 seconds and 13.9 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.005781
2023-07-05 17:36:13.489901: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr22.vg.gfa"
2023-07-05 17:36:14.739438: Successfully ran: "vg validate /data/tmp/ce3493d5ef82593a9a47d6e926043a80/c10c/b22b/tmpoqn8f_c_/chr11.vg.clip" in 99.337 seconds and 2.8 Gi memory
2023-07-05 17:36:14.739758: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/ce3493d5ef82593a9a47d6e926043a80/c10c/b22b/tmpoqn8f_c_/chr11.vg.clip | awk '{print "chr11	" $0}'"
2023-07-05 17:36:14.890475: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr22.vg.gfa" in 1.3993 seconds and 26.2 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01087
2023-07-05 17:36:24.741605: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr3.vg.gfa"
2023-07-05 17:36:29.874779: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr3.vg.gfa" in 5.1315 seconds and 50.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.02076
2023-07-05 17:36:39.517753: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/ce3493d5ef82593a9a47d6e926043a80/c10c/b22b/tmpoqn8f_c_/chr11.vg.clip | awk '"'"'{print "chr11	" $0}'"'"''" in 24.7773 seconds and 2.8 Gi memory
2023-07-05 17:36:39.518060: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/ce3493d5ef82593a9a47d6e926043a80/c10c/b22b/tmpoqn8f_c_/chr11.vg.clip | awk '{print "chr11	" $0}'"
2023-07-05 17:36:39.634703: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr4.vg.gfa"
2023-07-05 17:36:42.296074: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/ce3493d5ef82593a9a47d6e926043a80/c10c/b22b/tmpoqn8f_c_/chr11.vg.clip | awk '"'"'{print "chr11	" $0}'"'"''" in 2.7773 seconds and 2.8 Gi memory
2023-07-05 17:36:42.296360: Running the command: "awk {print $0 "	chr11"} /data/tmp/ce3493d5ef82593a9a47d6e926043a80/c10c/b22b/tmpoqn8f_c_/chr11.vg.clip.bed"
2023-07-05 17:36:42.304209: Successfully ran: "awk '{print $0 "	chr11"}' /data/tmp/ce3493d5ef82593a9a47d6e926043a80/c10c/b22b/tmpoqn8f_c_/chr11.vg.clip.bed" in 0.0072 seconds and 3.7 Mi memory
2023-07-05 17:36:44.768680: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr4.vg.gfa" in 5.1324 seconds and 50.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.02076
2023-07-05 17:36:53.579411: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr5.vg.gfa"
2023-07-05 17:36:58.468609: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr5.vg.gfa" in 4.8876 seconds and 50.1 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.02078
2023-07-05 17:37:06.329175: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr6.vg.gfa"
2023-07-05 17:37:10.892282: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr6.vg.gfa" in 4.5613 seconds and 50.2 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.02083
2023-07-05 17:37:19.020877: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr7.vg.gfa"
2023-07-05 17:37:23.433785: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr7.vg.gfa" in 4.4113 seconds and 26.1 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01082
2023-07-05 17:37:25.020892: Successfully ran: "vg validate /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e45b/bc54/tmpbbu7rf_j/chr10.vg.clip" in 103.3272 seconds and 3.0 Gi memory
2023-07-05 17:37:25.021223: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e45b/bc54/tmpbbu7rf_j/chr10.vg.clip | awk '{print "chr10	" $0}'"
2023-07-05 17:37:29.418454: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr8.vg.gfa"
2023-07-05 17:37:33.443231: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr8.vg.gfa" in 4.0233 seconds and 26.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01079
2023-07-05 17:37:43.262354: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr9.vg.gfa"
2023-07-05 17:37:45.133655: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e45b/bc54/tmpbbu7rf_j/chr10.vg.clip | awk '"'"'{print "chr10	" $0}'"'"''" in 20.1117 seconds and 3.0 Gi memory
2023-07-05 17:37:45.133955: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e45b/bc54/tmpbbu7rf_j/chr10.vg.clip | awk '{print "chr10	" $0}'"
2023-07-05 17:37:48.015069: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e45b/bc54/tmpbbu7rf_j/chr10.vg.clip | awk '"'"'{print "chr10	" $0}'"'"''" in 2.8804 seconds and 3.0 Gi memory
2023-07-05 17:37:48.015387: Running the command: "awk {print $0 "	chr10"} /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e45b/bc54/tmpbbu7rf_j/chr10.vg.clip.bed"
2023-07-05 17:37:48.020934: Successfully ran: "awk '{print $0 "	chr10"}' /data/tmp/ce3493d5ef82593a9a47d6e926043a80/e45b/bc54/tmpbbu7rf_j/chr10.vg.clip.bed" in 0.005 seconds and 3.8 Mi memory
2023-07-05 17:37:48.366195: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chr9.vg.gfa" in 5.1018 seconds and 50.1 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.02078
2023-07-05 17:37:49.064422: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chrEBV.vg.gfa"
2023-07-05 17:37:49.081154: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chrEBV.vg.gfa" in 0.0157 seconds and 2.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.0008446
2023-07-05 17:37:49.085909: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chrM.vg.gfa"
2023-07-05 17:37:49.091296: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chrM.vg.gfa" in 0.0046 seconds and 2.2 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.000924
2023-07-05 17:37:49.169672: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chrOther.vg.gfa"
2023-07-05 17:37:49.222434: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chrOther.vg.gfa" in 0.0515 seconds and 3.6 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.001487
2023-07-05 17:37:54.377711: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chrX.vg.gfa"
2023-07-05 17:37:56.931446: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chrX.vg.gfa" in 2.5522 seconds and 26.1 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01082
2023-07-05 17:37:57.647873: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chrY.vg.gfa"
2023-07-05 17:37:57.881026: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/chrY.vg.gfa" in 0.2319 seconds and 49.9 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.02072
2023-07-05 17:37:57.935844: Running the command: "vg gbwt -G /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/full.merged.gfa --gbz-format -g /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/full.merged.gbz"
2023-07-05 17:38:10.439000: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/9eeeec3d467250f1999ba98b3759d207/1adc/5535/tmpz0p31nt1/chr9.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/1adc/5535/tmpz0p31nt1/chr9.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 1392.966 seconds and 5.0 Gi memory with job-memory 51.5 Gi. Percent utilization: 9.76
2023-07-05 17:38:10.439373: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/1adc/5535/tmpz0p31nt1/chr9.vg.clip"
2023-07-05 17:39:02.630309: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/0eb100b409605ef9a067a598d4d89da5/4236/e108/tmpe8d6a749/chr2.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/0eb100b409605ef9a067a598d4d89da5/4236/e108/tmpe8d6a749/chr2.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 1494.1467 seconds and 7.8 Gi memory with job-memory 73.6 Gi. Percent utilization: 10.65
2023-07-05 17:39:02.630592: Running the command: "vg validate /data/tmp/0eb100b409605ef9a067a598d4d89da5/4236/e108/tmpe8d6a749/chr2.vg.clip"
2023-07-05 17:39:43.744164: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/1adc/5535/tmpz0p31nt1/chr9.vg.clip" in 93.3038 seconds and 3.2 Gi memory
2023-07-05 17:39:43.744664: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/9eeeec3d467250f1999ba98b3759d207/1adc/5535/tmpz0p31nt1/chr9.vg.clip | awk '{print "chr9	" $0}'"
2023-07-05 17:40:02.099043: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/9eeeec3d467250f1999ba98b3759d207/1adc/5535/tmpz0p31nt1/chr9.vg.clip | awk '"'"'{print "chr9	" $0}'"'"''" in 18.3534 seconds and 3.2 Gi memory
2023-07-05 17:40:02.099523: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/9eeeec3d467250f1999ba98b3759d207/1adc/5535/tmpz0p31nt1/chr9.vg.clip | awk '{print "chr9	" $0}'"
2023-07-05 17:40:05.111112: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/9eeeec3d467250f1999ba98b3759d207/1adc/5535/tmpz0p31nt1/chr9.vg.clip | awk '"'"'{print "chr9	" $0}'"'"''" in 3.0106 seconds and 3.2 Gi memory
2023-07-05 17:40:05.111568: Running the command: "awk {print $0 "	chr9"} /data/tmp/9eeeec3d467250f1999ba98b3759d207/1adc/5535/tmpz0p31nt1/chr9.vg.clip.bed"
2023-07-05 17:40:05.116884: Successfully ran: "awk '{print $0 "	chr9"}' /data/tmp/9eeeec3d467250f1999ba98b3759d207/1adc/5535/tmpz0p31nt1/chr9.vg.clip.bed" in 0.0045 seconds and 3.8 Mi memory
2023-07-05 17:40:05.574556: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/ce3493d5ef82593a9a47d6e926043a80/1c94/eac3/tmpweivl4j0/chr7.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/1c94/eac3/tmpweivl4j0/chr7.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 1550.5221 seconds and 6.1 Gi memory with job-memory 52.5 Gi. Percent utilization: 11.71
2023-07-05 17:40:05.574792: Running the command: "vg validate /data/tmp/ce3493d5ef82593a9a47d6e926043a80/1c94/eac3/tmpweivl4j0/chr7.vg.clip"
2023-07-05 17:41:29.052151: Successfully ran: "vg validate /data/tmp/0eb100b409605ef9a067a598d4d89da5/4236/e108/tmpe8d6a749/chr2.vg.clip" in 146.4208 seconds and 5.3 Gi memory
2023-07-05 17:41:29.052544: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/0eb100b409605ef9a067a598d4d89da5/4236/e108/tmpe8d6a749/chr2.vg.clip | awk '{print "chr2	" $0}'"
2023-07-05 17:41:52.188112: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/0eb100b409605ef9a067a598d4d89da5/4236/e108/tmpe8d6a749/chr2.vg.clip | awk '"'"'{print "chr2	" $0}'"'"''" in 23.1348 seconds and 5.3 Gi memory
2023-07-05 17:41:52.188485: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/0eb100b409605ef9a067a598d4d89da5/4236/e108/tmpe8d6a749/chr2.vg.clip | awk '{print "chr2	" $0}'"
2023-07-05 17:41:56.117537: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/0eb100b409605ef9a067a598d4d89da5/4236/e108/tmpe8d6a749/chr2.vg.clip | awk '"'"'{print "chr2	" $0}'"'"''" in 3.9283 seconds and 5.1 Gi memory
2023-07-05 17:41:56.117884: Running the command: "awk {print $0 "	chr2"} /data/tmp/0eb100b409605ef9a067a598d4d89da5/4236/e108/tmpe8d6a749/chr2.vg.clip.bed"
2023-07-05 17:41:56.123241: Successfully ran: "awk '{print $0 "	chr2"}' /data/tmp/0eb100b409605ef9a067a598d4d89da5/4236/e108/tmpe8d6a749/chr2.vg.clip.bed" in 0.0048 seconds and 3.6 Mi memory
2023-07-05 17:42:09.452892: Successfully ran: "vg validate /data/tmp/ce3493d5ef82593a9a47d6e926043a80/1c94/eac3/tmpweivl4j0/chr7.vg.clip" in 123.8774 seconds and 3.9 Gi memory
2023-07-05 17:42:09.453228: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/ce3493d5ef82593a9a47d6e926043a80/1c94/eac3/tmpweivl4j0/chr7.vg.clip | awk '{print "chr7	" $0}'"
2023-07-05 17:42:37.776610: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/ce3493d5ef82593a9a47d6e926043a80/1c94/eac3/tmpweivl4j0/chr7.vg.clip | awk '"'"'{print "chr7	" $0}'"'"''" in 28.3227 seconds and 3.9 Gi memory
2023-07-05 17:42:37.776920: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/ce3493d5ef82593a9a47d6e926043a80/1c94/eac3/tmpweivl4j0/chr7.vg.clip | awk '{print "chr7	" $0}'"
2023-07-05 17:42:41.991247: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/ce3493d5ef82593a9a47d6e926043a80/1c94/eac3/tmpweivl4j0/chr7.vg.clip | awk '"'"'{print "chr7	" $0}'"'"''" in 4.2137 seconds and 3.9 Gi memory
2023-07-05 17:42:41.991564: Running the command: "awk {print $0 "	chr7"} /data/tmp/ce3493d5ef82593a9a47d6e926043a80/1c94/eac3/tmpweivl4j0/chr7.vg.clip.bed"
2023-07-05 17:42:41.999057: Successfully ran: "awk '{print $0 "	chr7"}' /data/tmp/ce3493d5ef82593a9a47d6e926043a80/1c94/eac3/tmpweivl4j0/chr7.vg.clip.bed" in 0.0069 seconds and 3.8 Mi memory
2023-07-05 17:44:38.202139: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/ce3493d5ef82593a9a47d6e926043a80/dd2e/437a/tmp6idy6wj1/chr4.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/dd2e/437a/tmp6idy6wj1/chr4.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 1820.382 seconds and 6.7 Gi memory with job-memory 61.1 Gi. Percent utilization: 10.96
2023-07-05 17:44:38.202378: Running the command: "vg validate /data/tmp/ce3493d5ef82593a9a47d6e926043a80/dd2e/437a/tmp6idy6wj1/chr4.vg.clip"
2023-07-05 17:46:14.288327: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/ce3493d5ef82593a9a47d6e926043a80/8309/d0d0/tmpdv2r4wmh/chr3.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/8309/d0d0/tmpdv2r4wmh/chr3.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 1917.2008 seconds and 6.5 Gi memory with job-memory 58.4 Gi. Percent utilization: 11.16
2023-07-05 17:46:14.288561: Running the command: "vg validate /data/tmp/ce3493d5ef82593a9a47d6e926043a80/8309/d0d0/tmpdv2r4wmh/chr3.vg.clip"
2023-07-05 17:46:26.438351: Successfully ran: "bash -c 'set -eo pipefail && clip-vg /data/tmp/ce3493d5ef82593a9a47d6e926043a80/ed66/e78e/tmpep8m1cda/chr1.vg -f -e GRCh38 -d _MINIGRAPH_ -u 10000 -a _MINIGRAPH_ -o /data/tmp/ce3493d5ef82593a9a47d6e926043a80/ed66/e78e/tmpep8m1cda/chr1.vg.clip.bed | vg clip -d 1 - -P GRCh38 | vg clip -s - -P GRCh38'" in 1926.3145 seconds and 7.8 Gi memory with job-memory 77.7 Gi. Percent utilization: 10.05
2023-07-05 17:46:26.438594: Running the command: "vg validate /data/tmp/ce3493d5ef82593a9a47d6e926043a80/ed66/e78e/tmpep8m1cda/chr1.vg.clip"
2023-07-05 17:47:03.022052: Successfully ran: "vg validate /data/tmp/ce3493d5ef82593a9a47d6e926043a80/dd2e/437a/tmp6idy6wj1/chr4.vg.clip" in 144.819 seconds and 4.6 Gi memory
2023-07-05 17:47:03.022386: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/ce3493d5ef82593a9a47d6e926043a80/dd2e/437a/tmp6idy6wj1/chr4.vg.clip | awk '{print "chr4	" $0}'"
2023-07-05 17:47:33.622457: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/ce3493d5ef82593a9a47d6e926043a80/dd2e/437a/tmp6idy6wj1/chr4.vg.clip | awk '"'"'{print "chr4	" $0}'"'"''" in 30.5994 seconds and 4.6 Gi memory
2023-07-05 17:47:33.622778: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/ce3493d5ef82593a9a47d6e926043a80/dd2e/437a/tmp6idy6wj1/chr4.vg.clip | awk '{print "chr4	" $0}'"
2023-07-05 17:47:38.593663: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/ce3493d5ef82593a9a47d6e926043a80/dd2e/437a/tmp6idy6wj1/chr4.vg.clip | awk '"'"'{print "chr4	" $0}'"'"''" in 4.9702 seconds and 4.6 Gi memory
2023-07-05 17:47:38.593951: Running the command: "awk {print $0 "	chr4"} /data/tmp/ce3493d5ef82593a9a47d6e926043a80/dd2e/437a/tmp6idy6wj1/chr4.vg.clip.bed"
2023-07-05 17:47:38.600034: Successfully ran: "awk '{print $0 "	chr4"}' /data/tmp/ce3493d5ef82593a9a47d6e926043a80/dd2e/437a/tmp6idy6wj1/chr4.vg.clip.bed" in 0.0055 seconds and 3.6 Mi memory
2023-07-05 17:48:30.291247: Successfully ran: "vg validate /data/tmp/ce3493d5ef82593a9a47d6e926043a80/8309/d0d0/tmpdv2r4wmh/chr3.vg.clip" in 136.002 seconds and 4.2 Gi memory
2023-07-05 17:48:30.292271: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/ce3493d5ef82593a9a47d6e926043a80/8309/d0d0/tmpdv2r4wmh/chr3.vg.clip | awk '{print "chr3	" $0}'"
2023-07-05 17:48:58.929590: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/ce3493d5ef82593a9a47d6e926043a80/8309/d0d0/tmpdv2r4wmh/chr3.vg.clip | awk '"'"'{print "chr3	" $0}'"'"''" in 28.6367 seconds and 4.2 Gi memory
2023-07-05 17:48:58.929898: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/ce3493d5ef82593a9a47d6e926043a80/8309/d0d0/tmpdv2r4wmh/chr3.vg.clip | awk '{print "chr3	" $0}'"
2023-07-05 17:49:03.372947: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/ce3493d5ef82593a9a47d6e926043a80/8309/d0d0/tmpdv2r4wmh/chr3.vg.clip | awk '"'"'{print "chr3	" $0}'"'"''" in 4.4424 seconds and 4.1 Gi memory
2023-07-05 17:49:03.373230: Running the command: "awk {print $0 "	chr3"} /data/tmp/ce3493d5ef82593a9a47d6e926043a80/8309/d0d0/tmpdv2r4wmh/chr3.vg.clip.bed"
2023-07-05 17:49:03.378542: Successfully ran: "awk '{print $0 "	chr3"}' /data/tmp/ce3493d5ef82593a9a47d6e926043a80/8309/d0d0/tmpdv2r4wmh/chr3.vg.clip.bed" in 0.0048 seconds and 3.6 Mi memory
2023-07-05 17:49:14.756652: Successfully ran: "vg validate /data/tmp/ce3493d5ef82593a9a47d6e926043a80/ed66/e78e/tmpep8m1cda/chr1.vg.clip" in 168.3173 seconds and 5.3 Gi memory
2023-07-05 17:49:14.756975: Running the command: "bash -c set -eo pipefail && vg paths -E -v /data/tmp/ce3493d5ef82593a9a47d6e926043a80/ed66/e78e/tmpep8m1cda/chr1.vg.clip | awk '{print "chr1	" $0}'"
2023-07-05 17:49:54.193642: Successfully ran: "bash -c 'set -eo pipefail && vg paths -E -v /data/tmp/ce3493d5ef82593a9a47d6e926043a80/ed66/e78e/tmpep8m1cda/chr1.vg.clip | awk '"'"'{print "chr1	" $0}'"'"''" in 39.436 seconds and 5.0 Gi memory
2023-07-05 17:49:54.193970: Running the command: "bash -c set -eo pipefail && vg stats -l -z /data/tmp/ce3493d5ef82593a9a47d6e926043a80/ed66/e78e/tmpep8m1cda/chr1.vg.clip | awk '{print "chr1	" $0}'"
2023-07-05 17:49:59.147853: Successfully ran: "bash -c 'set -eo pipefail && vg stats -l -z /data/tmp/ce3493d5ef82593a9a47d6e926043a80/ed66/e78e/tmpep8m1cda/chr1.vg.clip | awk '"'"'{print "chr1	" $0}'"'"''" in 4.9532 seconds and 5.3 Gi memory
2023-07-05 17:49:59.148142: Running the command: "awk {print $0 "	chr1"} /data/tmp/ce3493d5ef82593a9a47d6e926043a80/ed66/e78e/tmpep8m1cda/chr1.vg.clip.bed"
2023-07-05 17:49:59.158780: Successfully ran: "awk '{print $0 "	chr1"}' /data/tmp/ce3493d5ef82593a9a47d6e926043a80/ed66/e78e/tmpep8m1cda/chr1.vg.clip.bed" in 0.0101 seconds and 3.7 Mi memory
Issued job 'Job' kind-Job/instance-lv4qf2x0 v1 with job batch system ID: 2945 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'cat_stats' kind-cat_stats/instance-excf6huj v1 with job batch system ID: 2946 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'Job' kind-Job/instance-lzebn8ke v1 with job batch system ID: 2947 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 17:50:29.356356: Running the command: "tar czf /data/tmp/9eeeec3d467250f1999ba98b3759d207/51f1/4a77/tmp41m0514o/stats.tgz /data/tmp/9eeeec3d467250f1999ba98b3759d207/51f1/4a77/tmp41m0514o/clip-stats.bed /data/tmp/9eeeec3d467250f1999ba98b3759d207/51f1/4a77/tmp41m0514o/path-stats.tsv /data/tmp/9eeeec3d467250f1999ba98b3759d207/51f1/4a77/tmp41m0514o/graph-stats.tsv /data/tmp/9eeeec3d467250f1999ba98b3759d207/51f1/4a77/tmp41m0514o/sample-stats.tsv"
2023-07-05 17:50:29.609142: Successfully ran: "tar czf /data/tmp/9eeeec3d467250f1999ba98b3759d207/51f1/4a77/tmp41m0514o/stats.tgz /data/tmp/9eeeec3d467250f1999ba98b3759d207/51f1/4a77/tmp41m0514o/clip-stats.bed /data/tmp/9eeeec3d467250f1999ba98b3759d207/51f1/4a77/tmp41m0514o/path-stats.tsv /data/tmp/9eeeec3d467250f1999ba98b3759d207/51f1/4a77/tmp41m0514o/graph-stats.tsv /data/tmp/9eeeec3d467250f1999ba98b3759d207/51f1/4a77/tmp41m0514o/sample-stats.tsv" in 0.2521 seconds and 2.8 Mi memory
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-4vumqqtd v1 with job batch system ID: 2948 and disk: 29.2 Gi, memory: 46.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-myzrbfmv v1 with job batch system ID: 2949 and disk: 14.8 Gi, memory: 23.6 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-41krq5w9 v1 with job batch system ID: 2950 and disk: 26.2 Gi, memory: 42.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-4jmxhd0d v1 with job batch system ID: 2951 and disk: 25.7 Gi, memory: 41.2 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-ax8hithv v1 with job batch system ID: 2952 and disk: 12.2 Gi, memory: 19.6 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-e8_2vlu7 v1 with job batch system ID: 2953 and disk: 20.2 Gi, memory: 32.2 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-0_afdawi v1 with job batch system ID: 2954 and disk: 30.5 Gi, memory: 48.9 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-xza7la37 v1 with job batch system ID: 2955 and disk: 27.4 Gi, memory: 43.8 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-_kz053oi v1 with job batch system ID: 2956 and disk: 13.6 Gi, memory: 21.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-qslh2wh6 v1 with job batch system ID: 2957 and disk: 1.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-lh7mvo1q v1 with job batch system ID: 2958 and disk: 177.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-tfm7m7y_ v1 with job batch system ID: 2959 and disk: 24.0 Gi, memory: 38.4 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-kdiet3p9 v1 with job batch system ID: 2960 and disk: 12.3 Gi, memory: 19.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-qw9305c5 v1 with job batch system ID: 2961 and disk: 20.8 Gi, memory: 33.2 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-cfy5eagk v1 with job batch system ID: 2962 and disk: 7.8 Gi, memory: 12.5 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-_6q_ni78 v1 with job batch system ID: 2963 and disk: 15.5 Gi, memory: 24.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-tpkz5x2_ v1 with job batch system ID: 2964 and disk: 14.6 Gi, memory: 23.4 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-8xsc4kzu v1 with job batch system ID: 2965 and disk: 26.0 Gi, memory: 41.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-almt89uq v1 with job batch system ID: 2966 and disk: 11.6 Gi, memory: 18.5 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-z_hzpszc v1 with job batch system ID: 2967 and disk: 24.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-z_gjc91h v1 with job batch system ID: 2968 and disk: 13.6 Gi, memory: 21.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-xtcwahk9 v1 with job batch system ID: 2969 and disk: 3.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-br3_g0lp v1 with job batch system ID: 2970 and disk: 36.8 Gi, memory: 58.9 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-2amdkgby v1 with job batch system ID: 2971 and disk: 8.2 Gi, memory: 13.1 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-ojft9zrc v1 with job batch system ID: 2972 and disk: 18.0 Gi, memory: 28.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-el1n0gxy v1 with job batch system ID: 2973 and disk: 21.6 Gi, memory: 34.6 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-7c2lhdxt v1 with job batch system ID: 2974 and disk: 38.8 Gi, memory: 62.1 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-hwpfsupx v1 with job batch system ID: 2975 and disk: 27.1 Gi, memory: 29.9 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-vwdguk77 v1 with job batch system ID: 2976 and disk: 24.5 Gi, memory: 26.9 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-7bnk6nkx v1 with job batch system ID: 2977 and disk: 73.6 Gi, memory: 80.9 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-5gpnl7ag v1 with job batch system ID: 2978 and disk: 30.9 Gi, memory: 34.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-5jmp_1ve v1 with job batch system ID: 2979 and disk: 77.7 Gi, memory: 85.4 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-plkhi80q v1 with job batch system ID: 2980 and disk: 29.2 Gi, memory: 32.1 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-4ajcihjl v1 with job batch system ID: 2981 and disk: 43.3 Gi, memory: 47.6 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-1ejd9yyj v1 with job batch system ID: 2982 and disk: 41.5 Gi, memory: 45.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-36pt16eo v1 with job batch system ID: 2983 and disk: 58.4 Gi, memory: 64.3 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-aej4dhna v1 with job batch system ID: 2984 and disk: 49.6 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-tfumv48g v1 with job batch system ID: 2985 and disk: 6.7 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-58tzr9o4 v1 with job batch system ID: 2986 and disk: 16.4 Gi, memory: 18.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-13zk68fz v1 with job batch system ID: 2987 and disk: 24.7 Gi, memory: 27.1 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-g694t2g4 v1 with job batch system ID: 2988 and disk: 2.1 Gi, memory: 2.3 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-qmbpw_i2 v1 with job batch system ID: 2989 and disk: 15.7 Gi, memory: 17.2 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-gzbgxn5q v1 with job batch system ID: 2990 and disk: 23.1 Gi, memory: 25.5 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-h4gie9yk v1 with job batch system ID: 2991 and disk: 27.2 Gi, memory: 29.9 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-7eb2tfh_ v1 with job batch system ID: 2992 and disk: 48.0 Gi, memory: 52.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-871f85rh v1 with job batch system ID: 2993 and disk: 29.5 Gi, memory: 32.5 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-3j3vhduy v1 with job batch system ID: 2994 and disk: 54.7 Gi, memory: 60.2 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-41mz9m8r v1 with job batch system ID: 2995 and disk: 61.1 Gi, memory: 67.2 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-334n3_vr v1 with job batch system ID: 2996 and disk: 52.5 Gi, memory: 57.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-ksgcu4rx v1 with job batch system ID: 2997 and disk: 354.1 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-hiy_dstr v1 with job batch system ID: 2998 and disk: 51.5 Gi, memory: 56.6 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-1uc6p94i v1 with job batch system ID: 2999 and disk: 40.3 Gi, memory: 44.3 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-zz9awweo v1 with job batch system ID: 3000 and disk: 35.9 Gi, memory: 39.5 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_clip_vg' kind-vg_clip_vg/instance-c_wfuhma v1 with job batch system ID: 3001 and disk: 52.1 Gi, memory: 57.3 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 17:50:59.025149: Running the command: "vg convert -f -Q GRCh38 chrOther.vg -B"
2023-07-05 17:50:59.262453: Running the command: "vg convert -f -Q GRCh38 chrEBV.vg -B"
2023-07-05 17:50:59.330112: Successfully ran: "vg convert -f -Q GRCh38 chrOther.vg -B" in 0.3038 seconds and 37.1 Mi memory with job-memory 2.0 Gi. Percent utilization: 1.813
2023-07-05 17:50:59.344498: Successfully ran: "vg convert -f -Q GRCh38 chrEBV.vg -B" in 0.0811 seconds and 19.1 Mi memory with job-memory 2.0 Gi. Percent utilization: 0.9331
2023-07-05 17:51:00.453806: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2fe9/6ea1/tmpbci3_6b5/chrM.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:51:00.533862: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9b14/60cb/tmphxnkl4x3/chrEBV.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:51:00.785471: Running the command: "vg convert -f -Q GRCh38 chrY.vg -B"
2023-07-05 17:51:00.974732: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f777/c712/tmpn5mxsyys/chrOther.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:51:01.883743: Successfully ran: "vg convert -f -Q GRCh38 chrY.vg -B" in 1.0968 seconds and 192.9 Mi memory with job-memory 2.0 Gi. Percent utilization: 9.417
2023-07-05 17:51:02.236361: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2fe9/6ea1/tmpbci3_6b5/chrM.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 1.7815 seconds and 16.9 Mi memory with job-memory 2.0 Gi. Percent utilization: 0.8261
2023-07-05 17:51:02.236701: Running the command: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2fe9/6ea1/tmpbci3_6b5/chrM.vg.clip"
2023-07-05 17:51:02.264883: Successfully ran: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2fe9/6ea1/tmpbci3_6b5/chrM.vg.clip" in 0.0273 seconds and 15.5 Mi memory
2023-07-05 17:51:03.305302: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9b14/60cb/tmphxnkl4x3/chrEBV.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 2.7703 seconds and 25.4 Mi memory with job-memory 2.0 Gi. Percent utilization: 1.24
2023-07-05 17:51:03.305524: Running the command: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9b14/60cb/tmphxnkl4x3/chrEBV.vg.clip"
2023-07-05 17:51:03.367194: Successfully ran: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/9b14/60cb/tmphxnkl4x3/chrEBV.vg.clip" in 0.0611 seconds and 19.4 Mi memory
2023-07-05 17:51:03.991130: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ae0e/de29/tmp5vt2vs0c/chrY.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:51:05.129350: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f777/c712/tmpn5mxsyys/chrOther.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 4.1532 seconds and 78.9 Mi memory with job-memory 2.0 Gi. Percent utilization: 3.854
2023-07-05 17:51:05.129679: Running the command: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f777/c712/tmpn5mxsyys/chrOther.vg.clip"
2023-07-05 17:51:05.322616: Successfully ran: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f777/c712/tmpn5mxsyys/chrOther.vg.clip" in 0.192 seconds and 45.7 Mi memory
2023-07-05 17:51:15.216980: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ae0e/de29/tmp5vt2vs0c/chrY.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 11.2246 seconds and 234.2 Mi memory with job-memory 2.3 Gi. Percent utilization: 9.962
2023-07-05 17:51:15.217205: Running the command: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ae0e/de29/tmp5vt2vs0c/chrY.vg.clip"
2023-07-05 17:51:15.287716: Running the command: "vg convert -f -Q GRCh38 chrM.vg -B"
2023-07-05 17:51:15.324042: Successfully ran: "vg convert -f -Q GRCh38 chrM.vg -B" in 0.0351 seconds and 15.7 Mi memory with job-memory 2.0 Gi. Percent utilization: 0.7652
2023-07-05 17:51:15.847108: Successfully ran: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/ae0e/de29/tmp5vt2vs0c/chrY.vg.clip" in 0.629 seconds and 166.9 Mi memory
2023-07-05 17:51:27.459347: Running the command: "vg convert -f -Q GRCh38 chr22.vg -B"
2023-07-05 17:51:31.391165: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/aaf6/d6a1/tmpzkitwzbr/chr22.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:51:33.533522: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c6ee/a0ba/tmph_t3h54_/chr21.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:51:33.661838: Running the command: "vg convert -f -Q GRCh38 chr21.vg -B"
2023-07-05 17:51:39.808626: Running the command: "vg convert -f -Q GRCh38 chr20.vg -B"
2023-07-05 17:51:42.495635: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4be6/cabb/tmp_36jdduc/chr20.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:51:42.873308: Successfully ran: "vg convert -f -Q GRCh38 chr22.vg -B" in 15.4126 seconds and 1.2 Gi memory with job-memory 12.5 Gi. Percent utilization: 9.682
2023-07-05 17:51:47.278282: Running the command: "vg convert -f -Q GRCh38 chr15.vg -B"
2023-07-05 17:51:49.443738: Running the command: "vg convert -f -Q GRCh38 chr14.vg -B"
2023-07-05 17:51:49.798335: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0886/7986/tmpgnn47i3v/chr19.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:51:50.421004: Successfully ran: "vg convert -f -Q GRCh38 chr21.vg -B" in 16.7578 seconds and 1.2 Gi memory with job-memory 13.1 Gi. Percent utilization: 9.045
2023-07-05 17:51:53.240276: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/606c/6f39/tmpiktqutqt/chr15.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:51:56.293900: Running the command: "vg convert -f -Q GRCh38 chrX.vg -B"
2023-07-05 17:51:57.266789: Running the command: "vg convert -f -Q GRCh38 chr19.vg -B"
2023-07-05 17:51:58.718397: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6419/dde5/tmpsul515z1/chrX.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:51:59.249094: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c773/db0c/tmpz9rylqad/chr14.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:52:02.430897: Running the command: "vg convert -f -Q GRCh38 chr16.vg -B"
2023-07-05 17:52:02.445627: Successfully ran: "vg convert -f -Q GRCh38 chr20.vg -B" in 22.6355 seconds and 1.5 Gi memory with job-memory 18.5 Gi. Percent utilization: 7.943
2023-07-05 17:52:03.215865: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45a7/b2f0/tmpk09_huc2/chr16.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:52:08.273849: Running the command: "vg convert -f -Q GRCh38 chr12.vg -B"
2023-07-05 17:52:09.514029: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/9eeeec3d467250f1999ba98b3759d207/e124/692c/tmpco7rbd7q/chr17.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:52:09.514844: Running the command: "vg convert -f -Q GRCh38 chr17.vg -B"
2023-07-05 17:52:10.385571: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/359a/5d42/tmp9jzf36r_/chr12.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:52:10.541227: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/9eeeec3d467250f1999ba98b3759d207/ac16/b110/tmpvf0eozk6/chr18.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:52:10.542237: Running the command: "vg convert -f -Q GRCh38 chr18.vg -B"
2023-07-05 17:52:10.656824: Running the command: "vg convert -f -Q GRCh38 chr11.vg -B"
2023-07-05 17:52:11.467910: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b147/9224/tmpv00ky_sr/chr11.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:52:14.153330: Running the command: "vg convert -f -Q GRCh38 chr8.vg -B"
2023-07-05 17:52:14.525242: Running the command: "vg convert -f -Q GRCh38 chr10.vg -B"
2023-07-05 17:52:15.604859: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c80b/b4b9/tmphu6w9wq3/chr10.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:52:15.672509: Running the command: "vg convert -f -Q GRCh38 chr9.vg -B"
2023-07-05 17:52:17.240218: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1979/1814/tmpvq9ohw2b/chr8.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:52:17.544154: Successfully ran: "vg convert -f -Q GRCh38 chr15.vg -B" in 30.2645 seconds and 2.0 Gi memory with job-memory 21.7 Gi. Percent utilization: 9.303
2023-07-05 17:52:18.047886: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/08e7/1a54/tmpz90o_3y7/chr9.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:52:20.626037: Running the command: "vg convert -f -Q GRCh38 chr6.vg -B"
2023-07-05 17:52:21.143288: Running the command: "vg convert -f -Q GRCh38 chr3.vg -B"
2023-07-05 17:52:21.403773: Running the command: "vg convert -f -Q GRCh38 chr7.vg -B"
2023-07-05 17:52:22.388021: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/9eeeec3d467250f1999ba98b3759d207/aa80/58c3/tmpo0bvs1zw/chr13.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:52:22.388307: Running the command: "vg convert -f -Q GRCh38 chr13.vg -B"
2023-07-05 17:52:23.343575: Successfully ran: "vg convert -f -Q GRCh38 chr19.vg -B" in 26.0753 seconds and 1.6 Gi memory with job-memory 19.7 Gi. Percent utilization: 8.102
2023-07-05 17:52:23.502461: Successfully ran: "vg convert -f -Q GRCh38 chr14.vg -B" in 34.0574 seconds and 2.3 Gi memory with job-memory 23.6 Gi. Percent utilization: 9.569
2023-07-05 17:52:23.829760: Successfully ran: "vg gbwt -G /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/full.merged.gfa --gbz-format -g /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/full.merged.gbz" in 865.8927 seconds and 121.9 Gi memory with job-memory 235.3 Gi. Percent utilization: 51.79
2023-07-05 17:52:23.830389: Running the command: "bgzip /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/full.merged.gfa --threads 64"
2023-07-05 17:52:23.912574: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4435/2c8a/tmpb947bpkr/chr6.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:52:25.124473: Running the command: "vg convert -f -Q GRCh38 chr4.vg -B"
2023-07-05 17:52:25.862907: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/85b3/109d/tmp89dhxc97/chr7.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:52:26.227156: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f0ec/91c0/tmprg_ctlvg/chr3.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:52:27.124612: Running the command: "vg convert -f -Q GRCh38 chr5.vg -B"
2023-07-05 17:52:27.143381: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b294/2d80/tmpydm7x137/chr5.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:52:27.855582: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e361/61f4/tmpehz6p8y7/chr4.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:52:29.409232: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a9df/5174/tmpq_7eibzy/chr1.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:52:29.408791: Running the command: "vg convert -f -Q GRCh38 chr1.vg -B"
2023-07-05 17:52:32.067714: Successfully ran: "vg convert -f -Q GRCh38 chrX.vg -B" in 35.7725 seconds and 2.2 Gi memory with job-memory 23.4 Gi. Percent utilization: 9.229
2023-07-05 17:52:36.148186: Running the command: "vg convert -f -Q GRCh38 chr2.vg -B"
2023-07-05 17:52:36.148229: Running the command: "bash -c set -eo pipefail && vg clip /data/tmp/9eeeec3d467250f1999ba98b3759d207/13ee/295a/tmpps9e6rwo/chr2.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38"
2023-07-05 17:52:38.997751: Successfully ran: "vg convert -f -Q GRCh38 chr17.vg -B" in 29.4814 seconds and 1.9 Gi memory with job-memory 21.7 Gi. Percent utilization: 8.713
2023-07-05 17:52:39.498419: Successfully ran: "vg convert -f -Q GRCh38 chr18.vg -B" in 28.9547 seconds and 1.8 Gi memory with job-memory 19.6 Gi. Percent utilization: 9.417
2023-07-05 17:52:40.026435: Successfully ran: "vg convert -f -Q GRCh38 chr16.vg -B" in 37.594 seconds and 2.5 Gi memory with job-memory 28.7 Gi. Percent utilization: 8.845
2023-07-05 17:52:57.784233: Successfully ran: "vg convert -f -Q GRCh38 chr13.vg -B" in 35.3936 seconds and 2.4 Gi memory with job-memory 24.7 Gi. Percent utilization: 9.556
2023-07-05 17:52:58.031809: Successfully ran: "vg convert -f -Q GRCh38 chr11.vg -B" in 47.3736 seconds and 2.9 Gi memory with job-memory 33.2 Gi. Percent utilization: 8.675
2023-07-05 17:52:58.392387: Successfully ran: "vg convert -f -Q GRCh38 chr12.vg -B" in 50.1171 seconds and 2.8 Gi memory with job-memory 32.2 Gi. Percent utilization: 8.784
2023-07-05 17:53:07.549407: Successfully ran: "vg convert -f -Q GRCh38 chr9.vg -B" in 51.8754 seconds and 3.3 Gi memory with job-memory 41.2 Gi. Percent utilization: 7.909
2023-07-05 17:53:10.128168: Successfully ran: "vg convert -f -Q GRCh38 chr10.vg -B" in 55.601 seconds and 3.0 Gi memory with job-memory 34.6 Gi. Percent utilization: 8.792
2023-07-05 17:53:11.726899: Successfully ran: "vg convert -f -Q GRCh38 chr8.vg -B" in 57.5722 seconds and 3.3 Gi memory with job-memory 38.4 Gi. Percent utilization: 8.494
2023-07-05 17:53:24.273059: Successfully ran: "vg convert -f -Q GRCh38 chr6.vg -B" in 63.6459 seconds and 3.7 Gi memory with job-memory 41.7 Gi. Percent utilization: 8.891
2023-07-05 17:53:25.123109: Successfully ran: "vg convert -f -Q GRCh38 chr7.vg -B" in 63.7181 seconds and 4.0 Gi memory with job-memory 42.0 Gi. Percent utilization: 9.56
2023-07-05 17:53:34.892388: Successfully ran: "vg convert -f -Q GRCh38 chr3.vg -B" in 73.7477 seconds and 4.3 Gi memory with job-memory 46.7 Gi. Percent utilization: 9.3
2023-07-05 17:53:36.361668: Successfully ran: "vg convert -f -Q GRCh38 chr5.vg -B" in 69.2357 seconds and 4.2 Gi memory with job-memory 43.8 Gi. Percent utilization: 9.648
2023-07-05 17:53:46.336848: Successfully ran: "vg convert -f -Q GRCh38 chr4.vg -B" in 81.211 seconds and 4.6 Gi memory with job-memory 48.9 Gi. Percent utilization: 9.494
2023-07-05 17:53:57.993614: Successfully ran: "bgzip /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/full.merged.gfa --threads 64" in 94.1616 seconds and 46.6 Mi memory
2023-07-05 17:53:57.994291: Running the command: "vg snarls /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/full.merged.gbz -T -t 64"
2023-07-05 17:54:05.811826: Successfully ran: "vg convert -f -Q GRCh38 chr1.vg -B" in 96.4018 seconds and 5.2 Gi memory with job-memory 62.1 Gi. Percent utilization: 8.298
2023-07-05 17:54:13.093216: Successfully ran: "vg convert -f -Q GRCh38 chr2.vg -B" in 96.9438 seconds and 5.2 Gi memory with job-memory 58.9 Gi. Percent utilization: 8.837
Issued job 'make_vg_indexes' kind-make_vg_indexes/instance-rowu1jb3 v1 with job batch system ID: 3002 and disk: 282.4 Gi, memory: 235.3 Gi, cores: 64, accelerators: [], preemptible: False
2023-07-05 17:54:35.245772: Running the command: "bash -c set -eo pipefail && grep -v '^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr1.vg.gfa | sed -e 1s/_MINIGRAPH_//"
2023-07-05 17:54:42.569648: Successfully ran: "bash -c 'set -eo pipefail && grep -v '"'"'^W	_MINIGRAPH_'"'"' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr1.vg.gfa | sed -e 1s/_MINIGRAPH_//'" in 7.3222 seconds and 56.8 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.02355
2023-07-05 17:54:46.582310: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr10.vg.gfa"
2023-07-05 17:54:49.675422: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr10.vg.gfa" in 3.0911 seconds and 26.2 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01088
2023-07-05 17:54:54.679722: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr11.vg.gfa"
2023-07-05 17:54:58.141087: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr11.vg.gfa" in 3.4591 seconds and 26.2 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01087
2023-07-05 17:55:03.117533: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr12.vg.gfa"
2023-07-05 17:55:06.816981: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr12.vg.gfa" in 3.6976 seconds and 26.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.0108
2023-07-05 17:55:13.373746: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr13.vg.gfa"
2023-07-05 17:55:16.972151: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr13.vg.gfa" in 3.5962 seconds and 26.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01079
2023-07-05 17:55:20.927615: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr14.vg.gfa"
2023-07-05 17:55:23.286410: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr14.vg.gfa" in 2.3568 seconds and 26.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01079
2023-07-05 17:55:26.866106: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr15.vg.gfa"
2023-07-05 17:55:28.984153: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr15.vg.gfa" in 2.1167 seconds and 26.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01078
2023-07-05 17:55:33.174845: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr16.vg.gfa"
2023-07-05 17:55:35.706540: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr16.vg.gfa" in 2.53 seconds and 26.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01078
2023-07-05 17:55:39.225142: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr17.vg.gfa"
2023-07-05 17:55:41.162007: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr17.vg.gfa" in 1.9352 seconds and 13.9 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.005782
2023-07-05 17:55:44.278100: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr18.vg.gfa"
2023-07-05 17:55:47.461068: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr18.vg.gfa" in 3.1817 seconds and 14.2 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.005894
2023-07-05 17:55:54.953515: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr19.vg.gfa"
2023-07-05 17:55:56.876414: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr19.vg.gfa" in 1.9206 seconds and 14.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.005817
2023-07-05 17:56:03.581153: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr2.vg.gfa"
2023-07-05 17:56:09.420614: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr2.vg.gfa" in 5.8377 seconds and 49.9 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.02072
2023-07-05 17:56:12.388258: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr20.vg.gfa"
2023-07-05 17:56:14.037715: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr20.vg.gfa" in 1.6478 seconds and 14.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.005812
2023-07-05 17:56:15.943517: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr21.vg.gfa"
2023-07-05 17:56:17.138639: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr21.vg.gfa" in 1.1938 seconds and 14.2 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.005893
2023-07-05 17:56:19.015911: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr22.vg.gfa"
2023-07-05 17:56:20.063638: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr22.vg.gfa" in 1.0464 seconds and 14.1 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.005838
2023-07-05 17:56:26.960616: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr3.vg.gfa"
2023-07-05 17:56:33.095257: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr3.vg.gfa" in 6.1331 seconds and 50.2 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.02083
2023-07-05 17:56:38.921459: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr4.vg.gfa"
2023-07-05 17:56:43.737444: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr4.vg.gfa" in 4.8146 seconds and 50.1 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.02078
2023-07-05 17:56:50.594891: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr5.vg.gfa"
2023-07-05 17:56:54.945280: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr5.vg.gfa" in 4.3486 seconds and 50.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.02076
2023-07-05 17:57:02.407211: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr6.vg.gfa"
2023-07-05 17:57:09.957046: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr6.vg.gfa" in 7.5481 seconds and 50.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.02075
2023-07-05 17:57:16.657944: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr7.vg.gfa"
2023-07-05 17:57:20.974035: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr7.vg.gfa" in 4.3144 seconds and 26.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01079
2023-07-05 17:57:27.331884: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr8.vg.gfa"
2023-07-05 17:57:31.066098: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr8.vg.gfa" in 3.7328 seconds and 26.1 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01082
2023-07-05 17:57:36.463767: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr9.vg.gfa"
2023-07-05 17:57:43.195632: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chr9.vg.gfa" in 6.7305 seconds and 26.1 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01082
2023-07-05 17:57:43.510478: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chrEBV.vg.gfa"
2023-07-05 17:57:43.528715: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chrEBV.vg.gfa" in 0.017 seconds and 1.9 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.0007992
2023-07-05 17:57:43.533939: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chrM.vg.gfa"
2023-07-05 17:57:43.541228: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chrM.vg.gfa" in 0.0064 seconds and 2.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.0008365
2023-07-05 17:57:43.596610: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chrOther.vg.gfa"
2023-07-05 17:57:45.425556: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chrOther.vg.gfa" in 1.8278 seconds and 2.8 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.001172
2023-07-05 17:57:49.016127: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chrX.vg.gfa"
2023-07-05 17:57:51.387123: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chrX.vg.gfa" in 2.3698 seconds and 25.9 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01076
2023-07-05 17:57:51.810672: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chrY.vg.gfa"
2023-07-05 17:57:51.970187: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/chrY.vg.gfa" in 0.1582 seconds and 49.9 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.02072
2023-07-05 17:57:51.994793: Running the command: "vg gbwt -G /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/clip.merged.gfa --gbz-format -g /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/clip.merged.gbz"
2023-07-05 17:58:08.276916: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/aaf6/d6a1/tmpzkitwzbr/chr22.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 396.8844 seconds and 2.0 Gi memory with job-memory 17.2 Gi. Percent utilization: 11.61
2023-07-05 17:58:08.277160: Running the command: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/aaf6/d6a1/tmpzkitwzbr/chr22.vg.clip"
2023-07-05 17:58:23.357672: Successfully ran: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/aaf6/d6a1/tmpzkitwzbr/chr22.vg.clip" in 15.0796 seconds and 1.4 Gi memory
2023-07-05 17:59:44.895380: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c6ee/a0ba/tmph_t3h54_/chr21.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 491.3605 seconds and 2.1 Gi memory with job-memory 18.0 Gi. Percent utilization: 11.52
2023-07-05 17:59:44.895636: Running the command: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c6ee/a0ba/tmph_t3h54_/chr21.vg.clip"
2023-07-05 17:59:59.824441: Successfully ran: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c6ee/a0ba/tmph_t3h54_/chr21.vg.clip" in 14.9279 seconds and 1.4 Gi memory
2023-07-05 18:01:34.546865: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4be6/cabb/tmp_36jdduc/chr20.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 592.0496 seconds and 2.9 Gi memory with job-memory 25.5 Gi. Percent utilization: 11.32
2023-07-05 18:01:34.547109: Running the command: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4be6/cabb/tmp_36jdduc/chr20.vg.clip"
2023-07-05 18:01:56.752372: Successfully ran: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4be6/cabb/tmp_36jdduc/chr20.vg.clip" in 22.2044 seconds and 2.0 Gi memory
2023-07-05 18:02:20.290477: Successfully ran: "vg snarls /data/tmp/9eeeec3d467250f1999ba98b3759d207/40d5/0883/tmp9jlqh8kk/full.merged.gbz -T -t 64" in 502.2945 seconds and 89.8 Gi memory with job-memory 235.3 Gi. Percent utilization: 38.18
2023-07-05 18:02:45.013785: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0886/7986/tmpgnn47i3v/chr19.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 655.2139 seconds and 3.1 Gi memory with job-memory 27.1 Gi. Percent utilization: 11.57
2023-07-05 18:02:45.014150: Running the command: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0886/7986/tmpgnn47i3v/chr19.vg.clip"
2023-07-05 18:03:10.592981: Successfully ran: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/0886/7986/tmpgnn47i3v/chr19.vg.clip" in 25.5779 seconds and 2.2 Gi memory
22 jobs are running, 0 jobs are issued and waiting to run
2023-07-05 18:04:12.465452: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/9eeeec3d467250f1999ba98b3759d207/ac16/b110/tmpvf0eozk6/chr18.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 721.9226 seconds and 3.2 Gi memory with job-memory 26.9 Gi. Percent utilization: 12.05
2023-07-05 18:04:12.465830: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/ac16/b110/tmpvf0eozk6/chr18.vg.clip"
2023-07-05 18:04:37.481019: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/9eeeec3d467250f1999ba98b3759d207/e124/692c/tmpco7rbd7q/chr17.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 747.9652 seconds and 3.6 Gi memory with job-memory 29.9 Gi. Percent utilization: 12.15
2023-07-05 18:04:37.481385: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/e124/692c/tmpco7rbd7q/chr17.vg.clip"
2023-07-05 18:04:38.257081: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/ac16/b110/tmpvf0eozk6/chr18.vg.clip" in 25.7903 seconds and 2.2 Gi memory
2023-07-05 18:04:44.471355: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/606c/6f39/tmpiktqutqt/chr15.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 771.2295 seconds and 3.6 Gi memory with job-memory 29.9 Gi. Percent utilization: 11.93
2023-07-05 18:04:44.471603: Running the command: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/606c/6f39/tmpiktqutqt/chr15.vg.clip"
2023-07-05 18:05:05.621178: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/e124/692c/tmpco7rbd7q/chr17.vg.clip" in 28.1388 seconds and 2.5 Gi memory
2023-07-05 18:05:13.433213: Successfully ran: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/606c/6f39/tmpiktqutqt/chr15.vg.clip" in 28.9607 seconds and 2.5 Gi memory
2023-07-05 18:06:12.066264: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6419/dde5/tmpsul515z1/chrX.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 853.3464 seconds and 4.4 Gi memory with job-memory 32.1 Gi. Percent utilization: 13.78
2023-07-05 18:06:12.066502: Running the command: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6419/dde5/tmpsul515z1/chrX.vg.clip"
2023-07-05 18:06:35.668849: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c773/db0c/tmpz9rylqad/chr14.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 876.4182 seconds and 4.4 Gi memory with job-memory 32.5 Gi. Percent utilization: 13.4
2023-07-05 18:06:35.669089: Running the command: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c773/db0c/tmpz9rylqad/chr14.vg.clip"
2023-07-05 18:06:44.644437: Successfully ran: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/6419/dde5/tmpsul515z1/chrX.vg.clip" in 32.577 seconds and 2.8 Gi memory
2023-07-05 18:06:48.339246: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/9eeeec3d467250f1999ba98b3759d207/aa80/58c3/tmpo0bvs1zw/chr13.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 865.9499 seconds and 4.1 Gi memory with job-memory 34.0 Gi. Percent utilization: 11.95
2023-07-05 18:06:48.339507: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/aa80/58c3/tmpo0bvs1zw/chr13.vg.clip"
2023-07-05 18:07:07.869061: Successfully ran: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c773/db0c/tmpz9rylqad/chr14.vg.clip" in 32.1991 seconds and 2.7 Gi memory
2023-07-05 18:07:22.346842: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/aa80/58c3/tmpo0bvs1zw/chr13.vg.clip" in 34.0064 seconds and 2.9 Gi memory
2023-07-05 18:08:34.773165: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45a7/b2f0/tmpk09_huc2/chr16.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 991.5557 seconds and 4.5 Gi memory with job-memory 39.5 Gi. Percent utilization: 11.39
2023-07-05 18:08:34.773523: Running the command: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45a7/b2f0/tmpk09_huc2/chr16.vg.clip"
2023-07-05 18:09:10.681099: Successfully ran: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/45a7/b2f0/tmpk09_huc2/chr16.vg.clip" in 35.9066 seconds and 3.1 Gi memory
2023-07-05 18:10:26.537806: Successfully ran: "vg gbwt -G /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/clip.merged.gfa --gbz-format -g /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/clip.merged.gbz" in 754.5414 seconds and 99.4 Gi memory with job-memory 235.3 Gi. Percent utilization: 42.23
2023-07-05 18:10:26.538353: Running the command: "bgzip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/clip.merged.gfa --threads 64"
2023-07-05 18:11:22.154110: Successfully ran: "bgzip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/clip.merged.gfa --threads 64" in 55.6145 seconds and 46.5 Mi memory
2023-07-05 18:11:22.154591: Running the command: "vg snarls /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/clip.merged.gbz -T -t 64"
2023-07-05 18:11:49.946267: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/359a/5d42/tmp9jzf36r_/chr12.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 1179.5592 seconds and 5.3 Gi memory with job-memory 44.3 Gi. Percent utilization: 11.92
2023-07-05 18:11:49.946514: Running the command: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/359a/5d42/tmp9jzf36r_/chr12.vg.clip"
2023-07-05 18:12:33.268910: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b147/9224/tmpv00ky_sr/chr11.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 1221.7996 seconds and 5.5 Gi memory with job-memory 45.7 Gi. Percent utilization: 11.95
2023-07-05 18:12:33.269244: Running the command: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b147/9224/tmpv00ky_sr/chr11.vg.clip"
2023-07-05 18:12:34.367089: Successfully ran: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/359a/5d42/tmp9jzf36r_/chr12.vg.clip" in 44.4197 seconds and 3.8 Gi memory
2023-07-05 18:13:18.379536: Successfully ran: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b147/9224/tmpv00ky_sr/chr11.vg.clip" in 45.1094 seconds and 3.9 Gi memory
2023-07-05 18:13:54.151114: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/08e7/1a54/tmpz90o_3y7/chr9.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 1296.1018 seconds and 6.2 Gi memory with job-memory 56.6 Gi. Percent utilization: 10.88
2023-07-05 18:13:54.151462: Running the command: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/08e7/1a54/tmpz90o_3y7/chr9.vg.clip"
2023-07-05 18:14:40.113394: Successfully ran: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/08e7/1a54/tmpz90o_3y7/chr9.vg.clip" in 45.961 seconds and 4.3 Gi memory
2023-07-05 18:14:42.262723: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c80b/b4b9/tmphu6w9wq3/chr10.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 1346.6566 seconds and 5.7 Gi memory with job-memory 47.6 Gi. Percent utilization: 11.96
2023-07-05 18:14:42.262962: Running the command: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c80b/b4b9/tmphu6w9wq3/chr10.vg.clip"
2023-07-05 18:15:29.732165: Successfully ran: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/c80b/b4b9/tmphu6w9wq3/chr10.vg.clip" in 47.4683 seconds and 3.9 Gi memory
2023-07-05 18:16:26.392470: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1979/1814/tmpvq9ohw2b/chr8.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 1449.151 seconds and 6.5 Gi memory with job-memory 52.7 Gi. Percent utilization: 12.31
2023-07-05 18:16:26.392727: Running the command: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1979/1814/tmpvq9ohw2b/chr8.vg.clip"
2023-07-05 18:17:19.985270: Successfully ran: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/1979/1814/tmpvq9ohw2b/chr8.vg.clip" in 53.5916 seconds and 4.6 Gi memory
2023-07-05 18:18:30.455257: Successfully ran: "vg snarls /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/2a0a/8f1d/tmpqy43wb5a/clip.merged.gbz -T -t 64" in 428.2993 seconds and 57.7 Gi memory with job-memory 235.3 Gi. Percent utilization: 24.53
2023-07-05 18:18:31.279159: Successfully ran: "halMergeChroms chr1.hal,chr10.hal,chr11.hal,chr12.hal,chr13.hal,chr14.hal,chr15.hal,chr16.hal,chr17.hal,chr18.hal,chr19.hal,chr2.hal,chr20.hal,chr21.hal,chr22.hal,chr3.hal,chr4.hal,chr5.hal,chr6.hal,chr7.hal,chr8.hal,chr9.hal,chrEBV.hal,chrM.hal,chrOther.hal,chrX.hal,chrY.hal __merged__.hal --progress" in 8144.8421 seconds and 973.2 Mi memory with job-memory 12.8 Gi. Percent utilization: 7.399
2023-07-05 18:18:32.212568: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/85b3/109d/tmp89dhxc97/chr7.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 1566.3478 seconds and 7.0 Gi memory with job-memory 57.7 Gi. Percent utilization: 12.18
2023-07-05 18:18:32.212927: Running the command: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/85b3/109d/tmp89dhxc97/chr7.vg.clip"
2023-07-05 18:18:45.100149: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4435/2c8a/tmpb947bpkr/chr6.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 1581.1851 seconds and 7.0 Gi memory with job-memory 57.3 Gi. Percent utilization: 12.24
2023-07-05 18:18:45.100400: Running the command: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4435/2c8a/tmpb947bpkr/chr6.vg.clip"
Issued job 'make_giraffe_indexes' kind-make_giraffe_indexes/instance-ckwiamcb v1 with job batch system ID: 3003 and disk: 753.0 Gi, memory: 235.3 Gi, cores: 64, accelerators: [], preemptible: False
Issued job 'make_vcf' kind-make_vcf/instance-zkibwsgc v1 with job batch system ID: 3004 and disk: 282.4 Gi, memory: 235.3 Gi, cores: 64, accelerators: [], preemptible: False
2023-07-05 18:19:08.077670: Running the command: "bash -c set -eo pipefail && vg deconstruct /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/89d1/add0/tmpwa9912fj/clip.hprc-v1.1-mc-grch38.gbz -P GRCh38 -a -r /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/89d1/add0/tmpwa9912fj/clip.hprc-v1.1-mc-grch38.snarls -t 64 -O | bgzip --threads 64"
2023-07-05 18:19:14.992846: Running the command: "vg index -t 64 -j /data/tmp/9eeeec3d467250f1999ba98b3759d207/bd96/4b3c/tmpcg7782k4/clip.hprc-v1.1-mc-grch38.dist /data/tmp/9eeeec3d467250f1999ba98b3759d207/bd96/4b3c/tmpcg7782k4/clip.hprc-v1.1-mc-grch38.gbz"
2023-07-05 18:19:29.740823: Successfully ran: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/85b3/109d/tmp89dhxc97/chr7.vg.clip" in 57.5269 seconds and 5.0 Gi memory
2023-07-05 18:19:44.764463: Successfully ran: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/4435/2c8a/tmpb947bpkr/chr6.vg.clip" in 59.6631 seconds and 5.0 Gi memory
2023-07-05 18:21:11.394029: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b294/2d80/tmpydm7x137/chr5.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 1724.2492 seconds and 7.5 Gi memory with job-memory 60.2 Gi. Percent utilization: 12.45
2023-07-05 18:21:11.394280: Running the command: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b294/2d80/tmpydm7x137/chr5.vg.clip"
2023-07-05 18:21:19.492138: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f0ec/91c0/tmprg_ctlvg/chr3.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 1733.2637 seconds and 7.8 Gi memory with job-memory 64.3 Gi. Percent utilization: 12.16
2023-07-05 18:21:19.492409: Running the command: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f0ec/91c0/tmprg_ctlvg/chr3.vg.clip"
2023-07-05 18:22:14.358308: Successfully ran: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/b294/2d80/tmpydm7x137/chr5.vg.clip" in 62.9631 seconds and 5.0 Gi memory
2023-07-05 18:22:29.585712: Successfully ran: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/f0ec/91c0/tmprg_ctlvg/chr3.vg.clip" in 70.0924 seconds and 5.4 Gi memory
2023-07-05 18:22:54.470109: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e361/61f4/tmpehz6p8y7/chr4.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 1826.6132 seconds and 8.1 Gi memory with job-memory 67.2 Gi. Percent utilization: 12.01
2023-07-05 18:22:54.470373: Running the command: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e361/61f4/tmpehz6p8y7/chr4.vg.clip"
2023-07-05 18:24:06.140742: Successfully ran: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/e361/61f4/tmpehz6p8y7/chr4.vg.clip" in 71.6694 seconds and 5.8 Gi memory
2023-07-05 18:26:36.886668: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a9df/5174/tmpq_7eibzy/chr1.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 2047.476 seconds and 9.8 Gi memory with job-memory 85.4 Gi. Percent utilization: 11.52
2023-07-05 18:26:36.887027: Running the command: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a9df/5174/tmpq_7eibzy/chr1.vg.clip"
2023-07-05 18:27:56.650525: Successfully ran: "vg validate /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/a9df/5174/tmpq_7eibzy/chr1.vg.clip" in 79.7625 seconds and 6.8 Gi memory
2023-07-05 18:28:35.806056: Successfully ran: "bash -c 'set -eo pipefail && vg clip /data/tmp/9eeeec3d467250f1999ba98b3759d207/13ee/295a/tmpps9e6rwo/chr2.vg -d 9 -P GRCh38 -P CHM13 -m 1000 | vg clip -d 1 - -P GRCh38 -P CHM13 | vg clip -s - -P GRCh38'" in 2159.6564 seconds and 9.9 Gi memory with job-memory 80.9 Gi. Percent utilization: 12.26
2023-07-05 18:28:35.806433: Running the command: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/13ee/295a/tmpps9e6rwo/chr2.vg.clip"
2023-07-05 18:29:56.319912: Successfully ran: "vg validate /data/tmp/9eeeec3d467250f1999ba98b3759d207/13ee/295a/tmpps9e6rwo/chr2.vg.clip" in 80.5125 seconds and 6.9 Gi memory
Issued job 'Job' kind-Job/instance-rx4hl9er v1 with job batch system ID: 3005 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-0wtw9r8a v1 with job batch system ID: 3006 and disk: 11.6 Gi, memory: 18.5 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-a9054xp2 v1 with job batch system ID: 3007 and disk: 18.0 Gi, memory: 28.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-ggi_smis v1 with job batch system ID: 3008 and disk: 20.8 Gi, memory: 33.2 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-w5vva5ub v1 with job batch system ID: 3009 and disk: 3.3 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-ascjs_mc v1 with job batch system ID: 3010 and disk: 20.2 Gi, memory: 32.2 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-fdco4fsc v1 with job batch system ID: 3011 and disk: 30.5 Gi, memory: 48.9 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-l660ij0y v1 with job batch system ID: 3012 and disk: 14.6 Gi, memory: 23.4 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-9kbmz42c v1 with job batch system ID: 3013 and disk: 26.0 Gi, memory: 41.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-cvac_31w v1 with job batch system ID: 3014 and disk: 13.6 Gi, memory: 21.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-n4t7zrj8 v1 with job batch system ID: 3015 and disk: 38.8 Gi, memory: 62.1 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-abo4wpwk v1 with job batch system ID: 3016 and disk: 177.0 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-wt7h5xqk v1 with job batch system ID: 3017 and disk: 21.6 Gi, memory: 34.6 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-hupzqhxa v1 with job batch system ID: 3018 and disk: 7.8 Gi, memory: 12.5 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-utemfrew v1 with job batch system ID: 3019 and disk: 24.0 Gi, memory: 38.4 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-_3o8wmu8 v1 with job batch system ID: 3020 and disk: 1.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-5uf29pic v1 with job batch system ID: 3021 and disk: 25.7 Gi, memory: 41.2 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-zqnn9wlm v1 with job batch system ID: 3022 and disk: 12.2 Gi, memory: 19.6 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-g1bbq03z v1 with job batch system ID: 3023 and disk: 8.2 Gi, memory: 13.1 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-4op4ja7a v1 with job batch system ID: 3024 and disk: 24.8 Mi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-qq3nnupm v1 with job batch system ID: 3025 and disk: 26.2 Gi, memory: 42.0 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-jtmzyr6z v1 with job batch system ID: 3026 and disk: 14.8 Gi, memory: 23.6 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-zljirq25 v1 with job batch system ID: 3027 and disk: 29.2 Gi, memory: 46.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-qw9wdd9s v1 with job batch system ID: 3028 and disk: 36.8 Gi, memory: 58.9 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-tk0v4yfv v1 with job batch system ID: 3029 and disk: 13.6 Gi, memory: 21.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-jh0v7a4l v1 with job batch system ID: 3030 and disk: 27.4 Gi, memory: 43.8 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-_b45i57n v1 with job batch system ID: 3031 and disk: 15.5 Gi, memory: 24.7 Gi, cores: 1, accelerators: [], preemptible: False
Issued job 'vg_to_gfa' kind-vg_to_gfa/instance-bu44ybxq v1 with job batch system ID: 3032 and disk: 12.3 Gi, memory: 19.7 Gi, cores: 1, accelerators: [], preemptible: False
2023-07-05 18:30:59.631939: Running the command: "vg convert -f -Q GRCh38 chrM.vg -B"
2023-07-05 18:30:59.725087: Successfully ran: "vg convert -f -Q GRCh38 chrM.vg -B" in 0.0921 seconds and 16.1 Mi memory with job-memory 2.0 Gi. Percent utilization: 0.7837
2023-07-05 18:30:59.852869: Running the command: "vg convert -f -Q GRCh38 chrOther.vg -B"
2023-07-05 18:31:01.459952: Running the command: "vg convert -f -Q GRCh38 chrY.vg -B"
2023-07-05 18:31:06.046412: Successfully ran: "vg convert -f -Q GRCh38 chrOther.vg -B" in 6.1923 seconds and 50.1 Mi memory with job-memory 2.0 Gi. Percent utilization: 2.448
2023-07-05 18:31:06.977764: Running the command: "vg convert -f -Q GRCh38 chrEBV.vg -B"
2023-07-05 18:31:07.440755: Successfully ran: "vg convert -f -Q GRCh38 chrEBV.vg -B" in 0.4616 seconds and 20.2 Mi memory with job-memory 2.0 Gi. Percent utilization: 0.9859
2023-07-05 18:31:22.352531: Successfully ran: "vg convert -f -Q GRCh38 chrY.vg -B" in 20.8912 seconds and 234.2 Mi memory with job-memory 2.0 Gi. Percent utilization: 11.44
2023-07-05 18:31:22.358258: Running the command: "vg convert -f -Q GRCh38 chr21.vg -B"
2023-07-05 18:31:23.360533: Running the command: "vg convert -f -Q GRCh38 chr22.vg -B"
2023-07-05 18:31:32.515571: Running the command: "vg convert -f -Q GRCh38 chr20.vg -B"
2023-07-05 18:31:35.968528: Running the command: "vg convert -f -Q GRCh38 chr18.vg -B"
2023-07-05 18:31:44.464110: Running the command: "vg convert -f -Q GRCh38 chr17.vg -B"
2023-07-05 18:31:45.540234: Running the command: "vg convert -f -Q GRCh38 chr15.vg -B"
2023-07-05 18:31:52.711855: Running the command: "vg convert -f -Q GRCh38 chrX.vg -B"
2023-07-05 18:31:54.310068: Running the command: "vg convert -f -Q GRCh38 chr19.vg -B"
2023-07-05 18:31:54.833322: Running the command: "vg convert -f -Q GRCh38 chr13.vg -B"
2023-07-05 18:31:57.097629: Running the command: "vg convert -f -Q GRCh38 chr16.vg -B"
2023-07-05 18:31:59.358207: Running the command: "vg convert -f -Q GRCh38 chr14.vg -B"
2023-07-05 18:32:02.464660: Running the command: "vg convert -f -Q GRCh38 chr12.vg -B"
2023-07-05 18:32:03.609075: Running the command: "vg convert -f -Q GRCh38 chr11.vg -B"
2023-07-05 18:32:04.090691: Running the command: "vg convert -f -Q GRCh38 chr10.vg -B"
2023-07-05 18:32:08.180045: Running the command: "vg convert -f -Q GRCh38 chr9.vg -B"
2023-07-05 18:32:08.665355: Running the command: "vg convert -f -Q GRCh38 chr8.vg -B"
2023-07-05 18:32:11.740668: Running the command: "vg convert -f -Q GRCh38 chr6.vg -B"
2023-07-05 18:32:19.476841: Running the command: "vg convert -f -Q GRCh38 chr5.vg -B"
2023-07-05 18:32:20.080970: Running the command: "vg convert -f -Q GRCh38 chr7.vg -B"
2023-07-05 18:32:21.462011: Running the command: "vg convert -f -Q GRCh38 chr3.vg -B"
2023-07-05 18:32:22.603565: Running the command: "vg convert -f -Q GRCh38 chr4.vg -B"
2023-07-05 18:32:24.004440: Running the command: "vg convert -f -Q GRCh38 chr2.vg -B"
2023-07-05 18:32:24.447201: Running the command: "vg convert -f -Q GRCh38 chr1.vg -B"
2023-07-05 18:34:42.364474: Successfully ran: "vg convert -f -Q GRCh38 chr21.vg -B" in 200.0047 seconds and 1.4 Gi memory with job-memory 13.1 Gi. Percent utilization: 10.75
2023-07-05 18:34:48.814659: Successfully ran: "vg convert -f -Q GRCh38 chr22.vg -B" in 205.4527 seconds and 1.5 Gi memory with job-memory 12.5 Gi. Percent utilization: 11.91
2023-07-05 18:36:03.936910: Successfully ran: "vg convert -f -Q GRCh38 chr20.vg -B" in 271.42 seconds and 2.1 Gi memory with job-memory 18.5 Gi. Percent utilization: 11.12
2023-07-05 18:37:16.392469: Successfully ran: "vg convert -f -Q GRCh38 chr18.vg -B" in 340.4224 seconds and 2.3 Gi memory with job-memory 19.6 Gi. Percent utilization: 11.54
2023-07-05 18:37:25.701851: Successfully ran: "vg convert -f -Q GRCh38 chr19.vg -B" in 331.3905 seconds and 2.3 Gi memory with job-memory 19.7 Gi. Percent utilization: 11.53
2023-07-05 18:38:05.042102: Successfully ran: "vg convert -f -Q GRCh38 chr15.vg -B" in 379.4901 seconds and 2.6 Gi memory with job-memory 21.7 Gi. Percent utilization: 12.03
2023-07-05 18:38:05.308604: Successfully ran: "vg convert -f -Q GRCh38 chr17.vg -B" in 380.8284 seconds and 2.6 Gi memory with job-memory 21.7 Gi. Percent utilization: 11.82
2023-07-05 18:38:18.642033: Successfully ran: "vg convert -f -Q GRCh38 chr14.vg -B" in 379.2825 seconds and 2.8 Gi memory with job-memory 23.6 Gi. Percent utilization: 11.76
2023-07-05 18:38:49.771841: Successfully ran: "vg convert -f -Q GRCh38 chr13.vg -B" in 414.9371 seconds and 3.0 Gi memory with job-memory 24.7 Gi. Percent utilization: 12.06
2023-07-05 18:39:09.476602: Successfully ran: "vg convert -f -Q GRCh38 chr16.vg -B" in 432.3777 seconds and 3.2 Gi memory with job-memory 28.7 Gi. Percent utilization: 11.21
2023-07-05 18:39:50.690980: Successfully ran: "vg convert -f -Q GRCh38 chrX.vg -B" in 477.9777 seconds and 2.9 Gi memory with job-memory 23.4 Gi. Percent utilization: 12.33
2023-07-05 18:41:25.498619: Successfully ran: "vg convert -f -Q GRCh38 chr11.vg -B" in 561.8883 seconds and 4.0 Gi memory with job-memory 33.2 Gi. Percent utilization: 12.18
2023-07-05 18:41:28.284406: Successfully ran: "vg convert -f -Q GRCh38 chr12.vg -B" in 565.8185 seconds and 3.9 Gi memory with job-memory 32.2 Gi. Percent utilization: 12.14
2023-07-05 18:41:40.592028: Successfully ran: "vg convert -f -Q GRCh38 chr9.vg -B" in 572.4107 seconds and 4.4 Gi memory with job-memory 41.2 Gi. Percent utilization: 10.75
2023-07-05 18:42:05.363563: Successfully ran: "vg convert -f -Q GRCh38 chr10.vg -B" in 601.2716 seconds and 4.0 Gi memory with job-memory 34.6 Gi. Percent utilization: 11.5
2023-07-05 18:43:25.656710: Successfully ran: "vg convert -f -Q GRCh38 chr8.vg -B" in 676.9901 seconds and 4.7 Gi memory with job-memory 38.4 Gi. Percent utilization: 12.27
2023-07-05 18:44:21.042251: Successfully ran: "vg convert -f -Q GRCh38 chr7.vg -B" in 720.958 seconds and 5.1 Gi memory with job-memory 42.0 Gi. Percent utilization: 12.18
2023-07-05 18:44:45.678181: Successfully ran: "vg convert -f -Q GRCh38 chr6.vg -B" in 753.9363 seconds and 5.2 Gi memory with job-memory 41.7 Gi. Percent utilization: 12.44
2023-07-05 18:45:30.280554: Successfully ran: "vg convert -f -Q GRCh38 chr5.vg -B" in 790.7876 seconds and 5.2 Gi memory with job-memory 43.8 Gi. Percent utilization: 11.79
2023-07-05 18:46:03.975570: Successfully ran: "vg convert -f -Q GRCh38 chr3.vg -B" in 822.5123 seconds and 5.5 Gi memory with job-memory 46.7 Gi. Percent utilization: 11.85
2023-07-05 18:46:29.968308: Successfully ran: "vg convert -f -Q GRCh38 chr4.vg -B" in 847.3634 seconds and 6.0 Gi memory with job-memory 48.9 Gi. Percent utilization: 12.19
2023-07-05 18:49:16.077072: Successfully ran: "vg convert -f -Q GRCh38 chr1.vg -B" in 1011.6286 seconds and 7.0 Gi memory with job-memory 62.1 Gi. Percent utilization: 11.24
2023-07-05 18:49:49.440300: Successfully ran: "vg convert -f -Q GRCh38 chr2.vg -B" in 1045.4345 seconds and 7.1 Gi memory with job-memory 58.9 Gi. Percent utilization: 12.04
Issued job 'make_vg_indexes' kind-make_vg_indexes/instance-u_96j24t v1 with job batch system ID: 3033 and disk: 282.4 Gi, memory: 235.3 Gi, cores: 64, accelerators: [], preemptible: False
2023-07-05 18:50:05.236724: Running the command: "bash -c set -eo pipefail && grep -v '^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr1.vg.gfa | sed -e 1s/_MINIGRAPH_//"
2023-07-05 18:50:10.361713: Successfully ran: "bash -c 'set -eo pipefail && grep -v '"'"'^W	_MINIGRAPH_'"'"' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr1.vg.gfa | sed -e 1s/_MINIGRAPH_//'" in 5.1237 seconds and 57.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.02365
2023-07-05 18:50:14.361008: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr10.vg.gfa"
2023-07-05 18:50:18.176047: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr10.vg.gfa" in 3.8135 seconds and 26.2 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01087
2023-07-05 18:50:23.535278: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr11.vg.gfa"
2023-07-05 18:50:27.539157: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr11.vg.gfa" in 4.0021 seconds and 26.1 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01082
2023-07-05 18:50:31.540852: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr12.vg.gfa"
2023-07-05 18:50:35.363753: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr12.vg.gfa" in 3.8212 seconds and 26.1 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01082
2023-07-05 18:50:39.253723: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr13.vg.gfa"
2023-07-05 18:50:42.162872: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr13.vg.gfa" in 2.907 seconds and 26.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.0108
2023-07-05 18:50:45.389951: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr14.vg.gfa"
2023-07-05 18:50:48.096681: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr14.vg.gfa" in 2.705 seconds and 25.9 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01076
2023-07-05 18:50:51.686838: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr15.vg.gfa"
2023-07-05 18:50:54.206576: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr15.vg.gfa" in 2.5181 seconds and 25.9 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01076
2023-07-05 18:50:58.372281: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr16.vg.gfa"
2023-07-05 18:51:03.205314: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr16.vg.gfa" in 4.8315 seconds and 26.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01079
2023-07-05 18:51:06.579591: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr17.vg.gfa"
2023-07-05 18:51:09.034848: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr17.vg.gfa" in 2.4536 seconds and 14.2 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.005894
2023-07-05 18:51:12.230333: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr18.vg.gfa"
2023-07-05 18:51:14.439851: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr18.vg.gfa" in 2.2081 seconds and 14.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.005818
2023-07-05 18:51:17.378501: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr19.vg.gfa"
2023-07-05 18:51:19.403875: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr19.vg.gfa" in 2.024 seconds and 14.1 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.005844
2023-07-05 18:51:26.933080: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr2.vg.gfa"
2023-07-05 18:51:35.095971: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr2.vg.gfa" in 8.1613 seconds and 50.1 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.02078
2023-07-05 18:51:38.340309: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr20.vg.gfa"
2023-07-05 18:51:40.247042: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr20.vg.gfa" in 1.9051 seconds and 14.2 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.005896
2023-07-05 18:51:42.102206: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr21.vg.gfa"
2023-07-05 18:51:43.396702: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr21.vg.gfa" in 1.2928 seconds and 13.9 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.005781
2023-07-05 18:51:45.240909: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr22.vg.gfa"
2023-07-05 18:51:46.523212: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr22.vg.gfa" in 1.2806 seconds and 14.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.005828
2023-07-05 18:51:51.934038: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr3.vg.gfa"
2023-07-05 18:51:57.424900: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr3.vg.gfa" in 5.4891 seconds and 50.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.02074
2023-07-05 18:52:03.449110: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr4.vg.gfa"
2023-07-05 18:52:09.177273: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr4.vg.gfa" in 5.7265 seconds and 50.1 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.02078
2023-07-05 18:52:17.079560: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr5.vg.gfa"
2023-07-05 18:52:22.302136: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr5.vg.gfa" in 5.2208 seconds and 50.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.02075
2023-07-05 18:52:27.738637: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr6.vg.gfa"
2023-07-05 18:52:32.749840: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr6.vg.gfa" in 5.0094 seconds and 50.1 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.02078
2023-07-05 18:52:37.945658: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr7.vg.gfa"
2023-07-05 18:52:42.755927: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr7.vg.gfa" in 4.8085 seconds and 26.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01079
2023-07-05 18:52:47.688127: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr8.vg.gfa"
2023-07-05 18:52:53.859382: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr8.vg.gfa" in 6.1696 seconds and 25.9 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01076
2023-07-05 18:52:58.188025: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr9.vg.gfa"
2023-07-05 18:53:02.164662: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chr9.vg.gfa" in 3.975 seconds and 26.1 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01082
2023-07-05 18:53:02.508233: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chrEBV.vg.gfa"
2023-07-05 18:53:02.521071: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chrEBV.vg.gfa" in 0.0117 seconds and 2.1 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.0008511
2023-07-05 18:53:02.526505: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chrM.vg.gfa"
2023-07-05 18:53:02.533339: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chrM.vg.gfa" in 0.006 seconds and 2.0 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.0008381
2023-07-05 18:53:02.579234: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chrOther.vg.gfa"
2023-07-05 18:53:02.623991: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chrOther.vg.gfa" in 0.0435 seconds and 2.7 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.001114
2023-07-05 18:53:06.388458: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chrX.vg.gfa"
2023-07-05 18:53:09.226890: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chrX.vg.gfa" in 2.8372 seconds and 26.2 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.01087
2023-07-05 18:53:09.623084: Running the command: "grep -v ^H\|^W	_MINIGRAPH_ /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chrY.vg.gfa"
2023-07-05 18:53:09.778531: Successfully ran: "grep -v '^H\|^W	_MINIGRAPH_' /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/chrY.vg.gfa" in 0.1542 seconds and 49.8 Mi memory with job-memory 235.3 Gi. Percent utilization: 0.02067
2023-07-05 18:53:09.800516: Running the command: "vg gbwt -G /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/filter.merged.gfa --gbz-format -g /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/filter.merged.gbz"
2023-07-05 18:56:51.096572: Successfully ran: "bash -c 'set -eo pipefail && vg deconstruct /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/89d1/add0/tmpwa9912fj/clip.hprc-v1.1-mc-grch38.gbz -P GRCh38 -a -r /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/89d1/add0/tmpwa9912fj/clip.hprc-v1.1-mc-grch38.snarls -t 64 -O | bgzip --threads 64'" in 2263.017 seconds and 62.2 Gi memory with job-memory 235.3 Gi. Percent utilization: 26.44
2023-07-05 18:56:51.097078: Running the command: "tabix -p vcf /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/89d1/add0/tmpwa9912fj/clip.merged.vcf.gz"
2023-07-05 18:58:30.993148: Successfully ran: "tabix -p vcf /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/89d1/add0/tmpwa9912fj/clip.merged.vcf.gz" in 99.8948 seconds and 775.2 Mi memory
2023-07-05 18:58:34.790511: Running the command: "bash -c set -eo pipefail && vcfbub --input /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/89d1/add0/tmpwa9912fj/clip.merged.vcf.gz --max-ref-length 100000 --max-level 0 | bgzip --threads 64"
3 jobs are running, 0 jobs are issued and waiting to run
2023-07-05 19:05:12.496480: Successfully ran: "vg index -t 64 -j /data/tmp/9eeeec3d467250f1999ba98b3759d207/bd96/4b3c/tmpcg7782k4/clip.hprc-v1.1-mc-grch38.dist /data/tmp/9eeeec3d467250f1999ba98b3759d207/bd96/4b3c/tmpcg7782k4/clip.hprc-v1.1-mc-grch38.gbz" in 2757.502 seconds and 98.2 Gi memory with job-memory 235.3 Gi. Percent utilization: 41.75
2023-07-05 19:05:12.496892: Running the command: "vg minimizer -k 29 -w 11 -t 64 -d /data/tmp/9eeeec3d467250f1999ba98b3759d207/bd96/4b3c/tmpcg7782k4/clip.hprc-v1.1-mc-grch38.dist -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/bd96/4b3c/tmpcg7782k4/hprc-v1.1-mc-grch38.min /data/tmp/9eeeec3d467250f1999ba98b3759d207/bd96/4b3c/tmpcg7782k4/clip.hprc-v1.1-mc-grch38.gbz"
2023-07-05 19:05:17.462548: Successfully ran: "bash -c 'set -eo pipefail && vcfbub --input /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/89d1/add0/tmpwa9912fj/clip.merged.vcf.gz --max-ref-length 100000 --max-level 0 | bgzip --threads 64'" in 402.6699 seconds and 1.5 Gi memory
2023-07-05 19:05:17.463040: Running the command: "tabix -p vcf /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/89d1/add0/tmpwa9912fj/merged.filtered.vcf.gz"
2023-07-05 19:06:22.341421: Successfully ran: "tabix -p vcf /data/tmp/2381843612fe5e69a78eee6ad1fdd0e6/89d1/add0/tmpwa9912fj/merged.filtered.vcf.gz" in 64.8772 seconds and 48.7 Mi memory
2023-07-05 19:08:53.625946: Successfully ran: "vg gbwt -G /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/filter.merged.gfa --gbz-format -g /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/filter.merged.gbz" in 943.8242 seconds and 94.2 Gi memory with job-memory 235.3 Gi. Percent utilization: 40.05
2023-07-05 19:08:53.626517: Running the command: "bgzip /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/filter.merged.gfa --threads 64"
2023-07-05 19:09:50.071413: Successfully ran: "bgzip /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/filter.merged.gfa --threads 64" in 56.4436 seconds and 45.3 Mi memory
2023-07-05 19:09:50.071708: Running the command: "vg snarls /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/filter.merged.gbz -T -t 64"
2023-07-05 19:13:33.704338: Successfully ran: "vg minimizer -k 29 -w 11 -t 64 -d /data/tmp/9eeeec3d467250f1999ba98b3759d207/bd96/4b3c/tmpcg7782k4/clip.hprc-v1.1-mc-grch38.dist -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/bd96/4b3c/tmpcg7782k4/hprc-v1.1-mc-grch38.min /data/tmp/9eeeec3d467250f1999ba98b3759d207/bd96/4b3c/tmpcg7782k4/clip.hprc-v1.1-mc-grch38.gbz" in 501.2062 seconds and 69.1 Gi memory with job-memory 235.3 Gi. Percent utilization: 29.35
2023-07-05 19:17:54.343807: Successfully ran: "vg snarls /data/tmp/9eeeec3d467250f1999ba98b3759d207/3580/8453/tmpde57zzjw/filter.merged.gbz -T -t 64" in 484.271 seconds and 71.8 Gi memory with job-memory 235.3 Gi. Percent utilization: 30.5
Issued job 'make_giraffe_indexes' kind-make_giraffe_indexes/instance-nh011myx v1 with job batch system ID: 3034 and disk: 753.0 Gi, memory: 235.3 Gi, cores: 64, accelerators: [], preemptible: False
2023-07-05 19:18:37.649866: Running the command: "vg index -t 64 -j /data/tmp/9eeeec3d467250f1999ba98b3759d207/0c96/cce6/tmpy__lr7ew/filter.hprc-v1.1-mc-grch38.dist /data/tmp/9eeeec3d467250f1999ba98b3759d207/0c96/cce6/tmpy__lr7ew/filter.hprc-v1.1-mc-grch38.gbz"
2023-07-05 19:36:17.386041: Successfully ran: "vg index -t 64 -j /data/tmp/9eeeec3d467250f1999ba98b3759d207/0c96/cce6/tmpy__lr7ew/filter.hprc-v1.1-mc-grch38.dist /data/tmp/9eeeec3d467250f1999ba98b3759d207/0c96/cce6/tmpy__lr7ew/filter.hprc-v1.1-mc-grch38.gbz" in 1059.7345 seconds and 58.9 Gi memory with job-memory 235.3 Gi. Percent utilization: 25.05
2023-07-05 19:36:17.386421: Running the command: "vg minimizer -k 29 -w 11 -t 64 -d /data/tmp/9eeeec3d467250f1999ba98b3759d207/0c96/cce6/tmpy__lr7ew/filter.hprc-v1.1-mc-grch38.dist -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/0c96/cce6/tmpy__lr7ew/hprc-v1.1-mc-grch38.min /data/tmp/9eeeec3d467250f1999ba98b3759d207/0c96/cce6/tmpy__lr7ew/filter.hprc-v1.1-mc-grch38.gbz"
2023-07-05 19:43:27.478640: Successfully ran: "vg minimizer -k 29 -w 11 -t 64 -d /data/tmp/9eeeec3d467250f1999ba98b3759d207/0c96/cce6/tmpy__lr7ew/filter.hprc-v1.1-mc-grch38.dist -o /data/tmp/9eeeec3d467250f1999ba98b3759d207/0c96/cce6/tmpy__lr7ew/hprc-v1.1-mc-grch38.min /data/tmp/9eeeec3d467250f1999ba98b3759d207/0c96/cce6/tmpy__lr7ew/filter.hprc-v1.1-mc-grch38.gbz" in 430.091 seconds and 63.5 Gi memory with job-memory 235.3 Gi. Percent utilization: 26.98
Issued job 'export_join_wrapper' kind-export_join_wrapper/instance-0cnt_bpi v1 with job batch system ID: 3035 and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
1 jobs are running, 0 jobs are issued and waiting to run
Finished toil run successfully.
Stopping real-time logging server.
Joining real-time logging server thread.
Successfully deleted the job store: FileJobStore(/private/groups/cgl/hickey/work/hprc-v1.1-jul4/js-grch38)
cactus-pangenome has finished after 110998.24565718323 seconds