A:link { text-decoration: none; color: #0000FF; border:none; } A:visited { text-decoration: none; color: #AA0088; border:none; } A:hover { text-decoration: underline; border:none; } A.banner { color : #FFFFFF; text-decoration : none; } A.bblue { color: #FFFFFF; background-color: #9999FF; text-align: center; } A.binactive { color: #FFFFFF; background-color: #5870a3; font-size: 13pt; /* was 16 */ text-align: center; } .binactive { color: #FFFFFF; background-color: #5870a3; font-size: 13pt; /* was 16 */ text-align: center; } A.bactive { color: #FFFFFF; background-color: #b4cbdb; font-size: 13pt; /* was 16 */ text-align: center; } .bactive { color: #FFFFFF; background-color: #b4cbdb; font-size: 13pt; /* was 16 */ text-align: center; } A.bblue2 { color: #FFFF99; text-align: center; } A.bblue3 { color: #FFFF99; background-color: #5555FF; text-align: center; } A.nakedlinks { color: #3366ff; font-weight:bold; font-size:10pt; } A.nochange:visited { text-decoration: none; color: #0000FF; } body { font-family:sans-serif; background-color: white; } /* The following configs are used only for the site-map (currently) */ div.container { margin:10px 80px 10px 80px; padding-left:10px; } /* a compressed container, typically used in the middle of a page */ div#narrowcontainer { margin: 0px 150px 0px 150px; } div.narrowcontainer block { font-style:italic; padding-bottom:10px; } /* various indented and padded blocks */ div.paddedbox { margin: 0px 10px 0px 10px; padding: 10px 10px 10px 10px; } div.indent { padding-left: 15px; } div.bigindent { padding-left: 50px; } DIV.blue { background-color:#EEFFFF; padding-left:10px; padding-bottom:5px; border:1px solid gray; } DIV.category { font-size:14pt; color: #3366FF; margin: 8px 25px 2px 20px; padding-bottom:2px; padding-top:10px; font-weight:bold; border-bottom:1px solid #3366FF; } DIV.subcategory { font-size:16px; color: #333333; font-weight:bold; /* padding-bottom:4px; */ padding-top:10px; margin-top:10px; margin-bottom:2px; } DIV.pages { margin:0px 10px 0px 40px; font-size:13pt; color:black; } /* EVIDENCE HASH FORMATTING */ /* Tableized */ div.evidence { font-size:12px; margin-left:30px; } div.evidence tr { text-align:top; } div.evidence td { text-align:top; } div.evidence tr.updated { font-weight:bold; text-align:right; } /* The following sections contain selectors specific to different tasks. The four primary markup areas in WormBase are: admin: tasks relating to administration feedback: areas prompting the user for feedback or comments config: tasks relating to user-configurable options /* markup relating to administrative tasks */ div.admin { } /* markup relating to user configuration */ div.config { } /* markup relating to feedback prompts */ div.feedback { background-color: #CCFFFF; border: 1px solid gray; padding-left:10px; padding-right:10px; padding-bottom:15px; padding-top: 0px; line-height: 100%; } /* might reasonably wish to change colors of these sections, too */ .feedback h2 { font-size: 18px; } H1,H2,H3,H4 { color: #3366FF; } IMG { border:0px } INPUT { background-color: white; } INPUT.reset_button { background-color: pink; } UL { padding-left: 15; } LI { list-style: url(/images/reddot_small.gif) outside; } LI.tri { list-style: url(/ico/triangle_right.gif) outside; } PRE.peptide { font-family: monospace; } PRE.dna { font-family: monospace; } SELECT { background-color: white; } /* table styling - Weird, spacing is not in the spec...*/ table { padding: 0; spacing: 2; } /* obsolete? table.multi { padding: 0; border-spacing: 0; width: 100%; } */ th { padding: 0; } /* dataheader and datacell are used in page-wide tables such as in the listing of all rearrangements by chrom on the rearrangment page */ th.dataheader { padding:5px; background-color: #FFFFCC; border: 1px solid grey; } tr.pageentry { background-color: #BFD5E8; } td.pagetitle { text-align:center; width:20%; } td.pagedescription { font-style:italic; } td.datacell { border:1px solid grey; } /* this should probably be a contextual selector. it's used for tables inside div.container */ table.incontainer { margin:0px 10px 5px 40px; } .abstract { background-color: #FFEEEE; } .acetree { font-size: small; } .banner { font-size: x-large; align: center; background-color: #5077E9; color: yellow; padding: 100px 3px; } .code { background-color: #CCFFFF; font-family:courier; border:1px solid grey; font-size:12px; width:75%; margin:10px; padding:5px; } .data { } .blue { background-color: #5870a3; } .white { background-color: #FFFFFF; } .news { background-color: #BFD5E8; } .newsheadermain { background-color: #BFD5E8; color: #3366FF; font-size: 16px; font-weight:bold; } .newsheaderside { background-color: #5870a3; color: #FFFFFF; font-size: 16px; font-weight:bold; } div#alert { background-color: #BFD5E8; text-align:center; border-bottom:2px solid gray; padding:10px; margin-bottom:10px; } .databody { background-color: #CDE4F9; } .databodysmall { background-color: #EEFFFF; } .datatitle { background-color: #93CBF4; } .description { font-style: italic; } .error { color: red; } .exon { background-color: #00FFFF; color: #000000; } .exonalt { background-color: #EEEE99; color: #000000; } .exonm { /* font-weight: bold; */ background-color: #00FFFF; color: #000000; } .flankm { background-color: #FFFFFF; color: #888888; } .match { background-color: #FFFF77; color: #FF00; } .gene { font-style: italic; } .highlight { background-color: #f5deb3; } .intron { background-color: #FFFFFF; color: #000000; } .intronm { background-color: #FFFFFF; color: #000000; } .mism { color: #000000; background-color: #FF9999; } .note { color: red; } .phenotype { font-style: italic; margin-left: 2em; } .podheader1 { color: #3366FF; font-size:24px; } .podheader2 { color: #3366FF; font-size:22px; } .podheader3 { color: #3366FF; font-size:18px; } .podheader4 { color: #3366FF; font-size:16px; } .pre { font-family: monospace; } .resultstitle { background-color: #93cbf4; } .resultsbody { background-color: #CCFFFF; } .resultsbodyalt { background-color: #EEFFFF; } .search { } .searchtitle { background-color: #FFFF99; } .searchexamples { background-color: #FFFF99; font-style: italic; } .searchbody { background-color: #FFFFCC; } .searchbodyalt { background-color: #CCFFFF; } .settingstitle { background-color: DarkKhaki; font-size: small; } .settingsbody { background-color: khaki; font-size: small; } .uploadtitle { background-color: #93cbf4; font-size: small; } .uploadbody { background-color: #CCFFFF; font-size: small; } .small { font-size: small; } .smalldescription { font-style: italic; font-size: small; } .superscript { vertical-align:super; font-size:10pt; color:black; } .technicalinfo { background-color: #FFFFFF; } .toggle { color: #3366FF; } .warning { color: red; } .cellwarning { background-color: #FF0033; } /* For pages that use SubSections, this div provides a convenient encapsulation that ensures titles and footnotes are positioned correctly */ div.subsection { padding-bottom:8px; width:100%; } /* Create a nice title for tables instead of relying on th hacks */ div.tabletitle { padding:10px 0 5px 0; font-weight:bold; } span.tablesubtitle { /* font-style:italic; */ font-weight:normal; } /* This div is used on the gene page to provide a small footnote for tables as necessary */ div.tablefootnotes { font-style:italic; margin-left:30px; padding-top:3px; text-align:left; } /* Used for empty data containers */ div.notapplicable { font-style:italic; text-align:left; } td.rowheader { font-weight:bold; text-align:left; } /* GBrowse configuration */ .tRNAs { background-color: white; color: black; curatedexon: slateblue; fontcolor: slateblue; bump: -1; height: 3; } .transcriptf { glyph: wormbase_transcript; background-color: white; color: black; forwardcolor: slateblue; reversecolor: dodgerblue; bump: -1; height: 10; key: 'Predicted genes (forward)'; } .transcriptr { glyph: wormbase_transcript; color: black; forwardcolor: slateblue; reversecolor: dodgerblue; color: black; bump: +1; height: 10; key: 'Predicted genes (reverse)'; } .Briggsae-Alignments-(WABA) { background-color: blue; glyph: graded_segments; max_score: 100; color: black; bump: +1; height: 6; connectgroups: 1; connector: black; key: 'Briggsae alignments (WABA)'; } .ESTs-Aligned-with-BLAT-(best) { background-color: limegreen; color: black; bump: +1; height: 6; stranded: 1; connectgroups: 1; connector: black; key: 'ESTs aligned by BLAT (best)'; } .ESTs-Aligned-with-BLAT-(other) { background-color: lightgray; color: black; bump: +1; height: 6; stranded: 1; connectgroups: 1; connector: black; key: 'ESTs aligned by BLAT (other)'; } .mRNAs-Aligned-with-BLAT-(best) { background-color: yellow; color: black; bump: +1; height: 6; stranded: 1; connectgroups: 1; connector: black; key: 'mRNAs aligned by BLAT (best)'; } .mRNAs-Aligned-with-BLAT-(other) { background-color: lightgray; color: black; bump: +1; height: 6; stranded: 1; connectgroups: 1; connector: black; key: 'mRNAs aligned by BLAT (other)'; } .RNAi { background-color: goldenrod; color: black; height: 4; bump: +1; label: 1; key: 'RNAi experiments'; } .Expression-Chip-Profiles { background-color: orange; color: black; height: 4; bump: +1; label: 1; key: 'Expression chip profiles'; } .Transposon-Insertions { bgcolor: red; fgcolor: red; glyph: triangle; point: 1; orient: S; height: 10; bump: +1; label: 1; key: 'Transposon Insertions'; } .SNPs { bgcolor: red; fgcolor: red; glyph: diamond; point: 1; orient: S; height: 10; bump: +1; label: 1; key: 'SNP'; } .Worm-Transcriptome-Project-Genes { bgcolor: yellow; glyph: generic; strand_arrow: 1; color: black; height: 6; bump: +1; label: 1; key: 'Worm Transcriptome Project genes'; } .BLASTX-Hits { glyph: segments; bgcolor: orange; fgcolor: black; height: 4; key: 'BLASTX Hits'; } .TBLASTX-Hits { glyph: segments; bgcolor: red; fgcolor: black; height: 4; key: 'BLASTX Hits'; } .Oligos { background-color: violet; glyph: primers; color: black; connect: 1; connect_color: cyan; connector: violet; bump: -1; label: 1; key: 'Oligos'; } .Genbank-entries { glyph: anchored_arrow; bump: +1; tick: +2; relative_coords: 1; key: 'Genbank entry'; } .PolyA-sites { background-color: violet; glyph: ex; color: blue; bump: -1; key: 'polyA sites'; } .Primers { background-color: violet; color: black; connect: 1; connector: violet; connect_color: gray; bump: -1; key: 'oligos'; } .HMMer { background-color: red; color: black; connect: 1; height: 4; connector: black; label: 1; bump: -1; key: 'motifs'; } .Briggsae-Alignments-(BLAST) { background-color: tomato; color: black; height: 4; bump: +1; key: 'C. briggsae similarity'; } .Prosite { background-color: bisque; color: black; height: 4; bump: +1; key: 'prosite'; } .Misc_feature { background-color: bisque; color: black; height: 4; bump: +1; key: 'Miscellaneous'; } .Clones { color: black; glyph: anchored_arrow; height: 7; bump: +1; key: 'YACs & Cosmids'; } /* this is all das stuff */ default.default { glyph: GENERIC; das: 1; label: 1; bump: +1; height: 6; color: wheat; } Sequence.default { glyph: GENERIC; das: 1; label: 1; bump: +1; height: 6; color: black; background-color: gray; } ALLELE.default { glyph: ANCHORED_ARROW; das: 1; label: 1; bump: +1; height: 3; color: black; background-color: tomato; } translation.default { glyph: GENERIC; das: 1; height: 5; bump: +1; point: 2; color: blue; } translated.default { glyph: GENERIC; das: 1; height: 5; label: 1; bump: +1; height: 6; color: blue; } translated.stopsite { glyph: GENERIC; das: 1; label: 1; height: 5; color: black; } translated.ATG { glyph: CROSS; das: 1; label: 1; height: 2; color: green; } translated.CDS { glyph: ARROW; das: 1; label: 1; height: 6; color: cyan; } Predicted_gene.default { glyph: TRANSCRIPT; das: 1; label: 1; bump: +1; height: 10; color: dodgerblue; background-color: dodgerblue; } transcription.default { glyph: TRANSCRIPT; das: 1; label: 1; bump: +1; height: 10; color: black; background-color: wheat; } transcription.transcript { glyph: TRANSCRIPT; das: 1; label: 1; bump: +1; height: 10; background-color: dodgerblue; color: black; linewidth: 1; } transcription.curated { glyph: TRANSCRIPT; das: 1; label: 1; height: 10; color: black; background-color: wheat; } transcription.exon { glyph: GENERIC; das: 1; label: 1; height: 10; background-color: dodgerblue; color: dodgerblue; linewidth: 1; } transcription.intron { glyph: CONNECTOR; das: 1; label: 1; height: 10; color: blue; } transcription.tRNA { glyph: GENERIC; das: 1; label: 1; height: 5; color: red; color: red; linewidth: 1; } transcription.mRNA { glyph: TOOMANY; das: 1; label: 1; height: 5; color: magenta; color: black; linewidth: 1; } transcription.snRNA { glyph: GENERIC; das: 1; label: 1; height: 5; color: green; color: blue; linewidth: 1; } transcription.polyA { glyph: ARROW; das: 1; label: 1; height: 2; color: green; parallel: yes; northeast: no; } transcription.splice5 { glyph: ARROW; das: 1; label: 1; color: green; height: 2; parallel: yes; northeast: yes; southwest: no; } transcription.splice3 { glyph: ARROW; das: 1; label: 1; color: green; height: 2; parallel: yes; northeast: yes; southwest: no; } variation.default { glyph: GENERIC; das: 1; label: 1; bump: +1; height: 2; color: gray; } variation.insertion { glyph: ARROW; das: 1; label: 1; color: yellow; height: 5; parallel: no; northeast: no; } variation.deletion { glyph: ARROW; das: 1; label: 1; color: yellow; height: 5; parallel: no; southwest: no; } variation.substitution { glyph: ARROW; das: 1; label: 1; color: cyan; height: 5; parallel: no; northeast: yes; southwest: no; } structural.default { glyph: ANCHORED_ARROW; das: 1; bump: +1; label: 1; height: 4; linewidth: 1; color: red; } structural.Link { glyph: ANCHORED_ARROW; das: 1; bump: +1; height: 4; linewidth: 2; color: black; } structural.GenePair_STS { glyph: PRIMERS; das: 1; bump: +1; height: 4; linewidth: 1; color: violet; connect: 1; connector: violet; } structural.PCR_product { glyph: PRIMERS; das: 1; label: 1; height: 50; color: #33ff33; } structural.Genomic_canonical { glyph: ANCHORED_ARROW; das: 1; label: 1; bump: +1; height: 3; color: black; } structural.clone { glyph: GENERIC; das: 1; height: 5; color: #33ff33; } structural.assembly_tag { glyph: GENERIC; das: 1; point: 2; color: red; } structural.Clone_left_end { glyph: GENERIC; das: 1; point: 2; color: red; } structural.Clone_right_end { glyph: GENERIC; das: 1; point: 2; color: red; } structural.primer_left { glyph: TEXT; das: 1; label: 1; font: helvetica; fontsize: 8; string: l; color: purple; } structural.primer_right { glyph: TEXT; das: 1; label: 1; font: helvetica; fontsize: 8; string: r; color: purple; } structural.oligo { glyph: GENERIC; das: 1; bump: +1; height: 3; color: #669900; background-color: white; } structural.SNP { glyph: TRIANGLE; point: 1; das: 1; label: 1; height: 2; color: green; } Homol_data.default { glyph: SEGMENTS; das: 1; bump: +1; label: 1; height: 3; color: black; background-color: red; } Homol_data.NN { glyph: TOOMANY; das: 1; label: 1; height: 50; color: #666666; linewidth: 1; } Homol_data.NP { glyph: SEGMENTS; das: 1; label: 1; height: 50; color: #666666; linewidth: 1; } Homol_data.PN { glyph: SEGMENTS; das: 1; label: 1; height: 2; color: #666666; linewidth: 1; } Homol_data.PP { glyph: SEGMENTS; das: 1; label: 1; height: 50; color: #666666; linewidth: 1; } similarity.default { glyph: SEGMENTS; das: 1; label: 1; bump: +1; height: 5; background-color: limegreen; color: black; } similarity.BLAT_EST_BEST { glyph: SEGMENTS; das: 1; bump: +1; height: 5; background-color: darkgray; color: greenyellow; fillcolor: red; } similarity.BLASTN { glyph: SEGMENTS; das: 1; bump: +1; height: 5; background-color: darkgray; color: lawngreen; } similarity.BLASTN_EST_briggsae { glyph: SEGMENTS; das: 1; bump: +1; height: 5; background-color: darkgray; color: thistle; } similarity.BLASTN_EST_elegans { glyph: SEGMENTS; das: 1; bump: +1; height: 5; background-color: darkgray; color: springgreen; } similarity.BLASTN_TC1 { glyph: SEGMENTS; das: 1; bump: +1; height: 5; background-color: darkgray; color: lime; } similarity.BLASTN_briggsae_cosmid { glyph: SEGMENTS; das: 1; bump: +1; height: 5; background-color: darkgray; color: orchid; } similarity.BLASTN_eleg_brig { glyph: SEGMENTS; das: 1; bump: +1; height: 5; background-color: darkgray; color: limegreen; } similarity.BLASTN_elegans_cosmid { glyph: SEGMENTS; das: 1; bump: +1; height: 5; background-color: darkgray; color: darkgreen; } similarity.BLASTX { glyph: SEGMENTS; das: 1; bump: +1; height: 5; background-color: darkgray; color: red; } similarity.BLASTX_wormpep { glyph: SEGMENTS; das: 1; bump: +1; height: 5; background-color: darkgray; color: darkred; } similarity.BLASTP { glyph: SEGMENTS; das: 1; bump: +1; height: 5; background-color: darkgray; color: yellow; } similarity.TBLASTN { glyph: SEGMENTS; das: 1; bump: +1; height: 5; background-color: darkgray; color: cyan; } similarity.TBLASTX { glyph: SEGMENTS; das: 1; bump: +1; height: 5; background-color: darkgray; color: royalblue; } similarity.TBLASTX_briggsae { glyph: SEGMENTS; das: 1; bump: +1; height: 5; background-color: darkgray; color: violet; } similarity.TBLASTX_EST_elegans { glyph: SEGMENTS; das: 1; bump: +1; height: 5; background-color: darkgray; color: dodgerblue; } similarity.TBLASTX_EST { glyph: SEGMENTS; das: 1; bump: +1; height: 5; background-color: darkgray; color: dodgerblue; } repeat.default { glyph: GENERIC; das: 1; bump: +1; height: 3; background-color: #ffe4c4; color: #8b7d6b; } repeat.microsatellite { glyph: GENERIC; das: 1; label: 1; height: 50; color: #6699cc; } repeat.inverted_repeat { glyph: GENERIC; das: 1; label: 1; height: 50; color: #6699cc; } repeat.tandem_repeat { glyph: GENERIC; das: 1; label: 1; height: 5; color: #6699cc; } repeat.transposable_element { glyph: GENERIC; das: 1; label: 1; height: 5; color: #6699cc; } repeat.LINE { glyph: GENERIC; das: 1; label: 1; height: 5; color: #6699cc; } experimental.default { glyph: GENERIC; das: 1; label: 1; bump: +1; height: 5; color: black; background-color: #b8860b; } experimental.cDNA_for_RNAi { glyph: SPAN; das: 1; label: 1; bump: +1; height: 4; color: black; background-color: limegreen; } experimental.knockout { glyph: TRIANGLE; point: 1; das: 1; label: 1; color: red; } experimental.expression_tag { glyph: GENERIC; das: 1; label: 1; color: cyan; } experimental.microarrayed { glyph: TRIANGLE; das: 1; color: yellow; } experimental.RNAi { glyph: GENERIC; das: 1; label: 1; bump: +1; height: 4; background-color: goldenrod; color: black; } experimental.transgenic { glyph: GENERIC; das: 1; label: 1; color: blue; } experimental.mutant { glyph: GENERIC; das: 1; label: 1; color: violet; } partial_gene.default { glyph: GENERIC; das: 1; label: 1; background-color: yellow; color: orange; height: 5; bump: +1; } .test { color:black; text-transform:none; }