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InterProScan Sequence Search

This form allows you to query your sequence against InterPro. For more detailed information see the documentation for the perl stand-alone InterProScan package (Readme file or FAQ's), or the InterPro user manual or help pages.


Please Note: PatternScan is a new version of the PROSITE pattern search software which uses new code developed by the PROSITE team. The ScanRegExp program was internally developed by the InterPro team to be equivalent to the PROSITE code and depends on data which is no longer generated (confirm.patterns from Emotif). It was therefore deemed necessary to move over to using the same program as PROSITE, ps_scan.pl which uses evaluator mini-profiles to confirms whether or not a match is true positive. The outcome of this is a more sensitive predictor of True matches and an effective increase in the coverage of True PROSITE matches. ScanRegExp program will be phased out of the External Services InterProScan by the end of 2008 and the data will no longer be provided in the InterPro data updates from our FTP site. Help for more information.

Please Note: Due to resource limitations the InterProScan service will not accept nucleotide sequence submissions until further notice. Please see the Help for more information.

FTP Download Software
        RESULTS YOUR EMAIL
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APPLICATIONS TO RUN Clear all Check all
BlastProDom FPrintScan HMMPIR HMMPfam HMMSmart
HMMTigr ProfileScan ScanRegExp patternScan SuperFamily SignalPHMM
TMHMM HMMPanther Gene3D  

Enter or Paste a PROTEIN Sequence in any format:
Upload a file:

PLEASE NOTE: Interactive job results are stored for 24 hours, email job results are stored for one week.
If you plan to use these services during a course please contact us using the email below.
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